Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 85 of 144
Found at i:25843678 original size:24 final size:24
Alignment explanation
Indices: 25843615--25843685 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
25843605 AAAATAAATA
* *
25843615 AATTGTTATGTGAGTTACCATGTG
1 AATTGTTACGTGAGTTGCCATGTG
25843639 AATTGTTACG-GTAGTTGCCATGTG
1 AATTGTTACGTG-AGTTGCCATGTG
*
25843663 AATTGTTACGTGAGTTGCTATGT
1 AATTGTTACGTGAGTTGCCATGT
25843686 TTAAAAGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
23 1 0.02
24 40 0.95
25 1 0.02
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.41
Consensus pattern (24 bp):
AATTGTTACGTGAGTTGCCATGTG
Found at i:25851830 original size:5 final size:5
Alignment explanation
Indices: 25851820--25851859 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
25851810 TTTAAGAAAA
*
25851820 TAATT TAATT TAATT TAATT TAATC TAATT ATAA-T TAATT
1 TAATT TAATT TAATT TAATT TAATT TAATT -TAATT TAATT
25851860 ACTATTTCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 3 0.10
5 25 0.81
6 3 0.10
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (5 bp):
TAATT
Found at i:25852485 original size:17 final size:18
Alignment explanation
Indices: 25852463--25852506 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
25852453 ATGGAAATAT
25852463 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
25852480 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
25852498 AATCTTAGA
1 AATCTTAGA
25852507 AGATATGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:25853007 original size:17 final size:16
Alignment explanation
Indices: 25852983--25853037 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
25852973 TAAACCAATA
25852983 TATTTTATATAATTAT
1 TATTTTATATAATTAT
25852999 TATTCTTATA-AATATAT
1 TATT-TTATATAAT-TAT
*
25853016 TTTTATTATAT-ATTA-
1 TATT-TTATATAATTAT
25853031 TATTTTA
1 TATTTTA
25853038 AATTTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 3 0.09
15 3 0.09
16 9 0.27
17 18 0.55
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTTATATAATTAT
Found at i:25853061 original size:26 final size:25
Alignment explanation
Indices: 25853014--25853062 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
25853004 TTATAAATAT
* * *
25853014 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
25853039 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
25853063 TTTATATGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:25858216 original size:127 final size:128
Alignment explanation
Indices: 25858029--25858352 Score: 418
Period size: 128 Copynumber: 2.5 Consensus size: 128
25858019 GTCCAACGGA
* * ** * **
25858029 AAATCGAAACCCAACATGGTAGGAAACGATTCCTCGAACTTCCAAACATTGAACATTGCCTTGTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGCCTTGTT
* * * * * * *
25858094 TTAGAATTTA-AAGAATATGAA-TGAAATTCTAAAGGAATATTTAATTATTTTGAACAAATGAG
66 TTAGAATTTAGAAAAACA-CAAGTGAAATTCTAAAGGAAAATTCAATTATTTCGAACAAACGAG
* * * *
25858156 AAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAGCAGCAAACATTGCCTTGTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGCCTTGTT
* *
25858221 TTAGAATTTAGAAAAACACAAGTGAAATTCTAAAGGAAAATTCGATTATTTCGAACAAACGGG
66 TTAGAATTTAGAAAAACACAAGTGAAATTCTAAAGGAAAATTCAATTATTTCGAACAAACGAG
* *
25858284 AAATCGAAACCTAGCACGGTAGGGCACGATTTCTCGAATTTCCAAACATCAAACATTGCCTTCGT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGCCTT-GT
25858349 TTTA
65 TTTA
25858353 AGGAATTTTT
Statistics
Matches: 168, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
127 66 0.39
128 96 0.57
129 6 0.04
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (128 bp):
AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCAAACATTGCCTTGTT
TTAGAATTTAGAAAAACACAAGTGAAATTCTAAAGGAAAATTCAATTATTTCGAACAAACGAG
Found at i:25862558 original size:122 final size:122
Alignment explanation
Indices: 25862360--25862729 Score: 722
Period size: 122 Copynumber: 3.0 Consensus size: 122
25862350 AGTTACCCGG
*
25862360 AATTTACGATGTAAATCCAAAGTTGTATTTATGATTAAACAAAAATTCACATAAATACTTGAAAA
1 AATTTACCATGTAAATCCAAAGTTGTATTTATGATTAAACAAAAATTCACATAAATACTTGAAAA
25862425 ATATTTTCAAGCTAATAAATCTCAAAAAACAAAATCATAATAGTTGGCATATCCCAC
66 ATATTTTCAAGCTAATAAATCTCAAAAAACAAAATCATAATAGTTGGCATATCCCAC
25862482 AATTTACCATGTAAATCCAAAGTTGTATTTATGATTAAACAAAAATTCACATAAATACTTGAAAA
1 AATTTACCATGTAAATCCAAAGTTGTATTTATGATTAAACAAAAATTCACATAAATACTTGAAAA
25862547 ATATTTTCAAGCTAATAAATCTCAAAAAACAAAATCATAATAGTTGGCATATCCCAC
66 ATATTTTCAAGCTAATAAATCTCAAAAAACAAAATCATAATAGTTGGCATATCCCAC
25862604 AATTTACCATGTAAATCCAAAGTTGTATTTATGATTAAACAAAAATTCACATAAATACTTGAAAA
1 AATTTACCATGTAAATCCAAAGTTGTATTTATGATTAAACAAAAATTCACATAAATACTTGAAAA
*
25862669 ATATTTTCAAGCTAATAAATCTCAAAAAACAAAATCATAATAGTTTGCATATCCCAC
66 ATATTTTCAAGCTAATAAATCTCAAAAAACAAAATCATAATAGTTGGCATATCCCAC
25862726 AATT
1 AATT
25862730 CATACAATAA
Statistics
Matches: 246, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 246 1.00
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (122 bp):
AATTTACCATGTAAATCCAAAGTTGTATTTATGATTAAACAAAAATTCACATAAATACTTGAAAA
ATATTTTCAAGCTAATAAATCTCAAAAAACAAAATCATAATAGTTGGCATATCCCAC
Found at i:25866323 original size:45 final size:46
Alignment explanation
Indices: 25866256--25866379 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
25866246 CATATGACCT
*
25866256 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
25866299 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
25866345 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
25866380 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:25866362 original size:46 final size:45
Alignment explanation
Indices: 25866256--25866490 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
25866246 CATATGACCT
*
25866256 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
25866299 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
25866345 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
25866382 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
25866419 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
25866456 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
25866491 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:25866383 original size:37 final size:37
Alignment explanation
Indices: 25866341--25866517 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
25866331 AGCTGAAGCT
* **
25866341 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
25866378 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
25866415 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
25866452 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
25866489 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
25866518 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:25874021 original size:45 final size:46
Alignment explanation
Indices: 25873954--25874077 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
25873944 CATATGACCT
*
25873954 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
25873997 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
25874043 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
25874078 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:25874060 original size:46 final size:45
Alignment explanation
Indices: 25873954--25874188 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
25873944 CATATGACCT
*
25873954 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
25873997 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
25874043 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
25874080 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
25874117 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
25874154 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
25874189 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:25874081 original size:37 final size:37
Alignment explanation
Indices: 25874039--25874215 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
25874029 AGCTGAAGCT
* **
25874039 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
25874076 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
25874113 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
25874150 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
25874187 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
25874216 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:25880525 original size:9 final size:9
Alignment explanation
Indices: 25880511--25880580 Score: 113
Period size: 9 Copynumber: 7.8 Consensus size: 9
25880501 TTTAGTTAAA
25880511 AATTACCCG
1 AATTACCCG
25880520 AATTACCCG
1 AATTACCCG
*
25880529 AATTACCTG
1 AATTACCCG
25880538 AATTACCCG
1 AATTACCCG
25880547 AATTACCCG
1 AATTACCCG
*
25880556 AATTAACCG
1 AATTACCCG
*
25880565 AATTAACCG
1 AATTACCCG
25880574 AATTACC
1 AATTACC
25880581 GAAAAATACC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.37, C:0.29, G:0.10, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:25881927 original size:13 final size:13
Alignment explanation
Indices: 25881911--25881961 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
25881901 TTTAAACCAA
25881911 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
25881924 ACTTCTCAAAAAC
1 ACTTTTCAAAAGC
* *
25881937 AATTTTCTACAA-C
1 ACTTTTC-AAAAGC
25881950 ACTTTTCAAAAG
1 ACTTTTCAAAAG
25881962 TATTGCCAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
12 3 0.10
13 23 0.79
14 3 0.10
ACGTcount: A:0.41, C:0.24, G:0.04, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:25895031 original size:18 final size:18
Alignment explanation
Indices: 25895004--25895048 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
25894994 AAGGATTAAA
25895004 TTAAGATTTAAGGTTGGG
1 TTAAGATTTAAGGTTGGG
*
25895022 TTAAGGTTTAAGGTT-GG
1 TTAAGATTTAAGGTTGGG
*
25895039 ATAAGATTTA
1 TTAAGATTTA
25895049 GAAGTTGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (18 bp):
TTAAGATTTAAGGTTGGG
Found at i:25908297 original size:18 final size:17
Alignment explanation
Indices: 25908261--25908299 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
25908251 CTGTTCTTTC
25908261 TTTCTTTTTCTATTTTA
1 TTTCTTTTTCTATTTTA
25908278 TTTCTTTATTCT-TTTCTA
1 TTTCTTT-TTCTATTT-TA
25908296 TTTC
1 TTTC
25908300 GTTCCACCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTCTTTTTCTATTTTA
Found at i:25908298 original size:58 final size:59
Alignment explanation
Indices: 25908223--25908353 Score: 219
Period size: 61 Copynumber: 2.2 Consensus size: 59
25908213 CCCTTTTCTT
*
25908223 TTTATTTCCTTTCTATTTCGTTCCA-CCTCTGTTCTTTCTTTCTTTTTCTATTTTATTTC
1 TTTA-TTCTTTTCTATTTCGTTCCACCCTCTGTTCTTTCTTTCTTTTTCTATTTTATTTC
25908282 TTTATTCTTTTCTATTTCGTTCCACCTCCTCTGTTCTTTCTTTCTTTTTCTATTTTATTTC
1 TTTATTCTTTTCTATTTCGTTCCA-C-CCTCTGTTCTTTCTTTCTTTTTCTATTTTATTTC
25908343 TTTATTCTTTT
1 TTTATTCTTTT
25908354 ATTATATTAA
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
58 19 0.28
59 4 0.06
61 45 0.66
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.66
Consensus pattern (59 bp):
TTTATTCTTTTCTATTTCGTTCCACCCTCTGTTCTTTCTTTCTTTTTCTATTTTATTTC
Found at i:25908356 original size:21 final size:21
Alignment explanation
Indices: 25908318--25908361 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
25908308 TCCTCTGTTC
* *
25908318 TTTCTTTCTTTTTCTATTTTA
1 TTTCTTTATTTTTCTATTATA
25908339 TTTCTTTATTCTTT-TATTATA
1 TTTCTTTATT-TTTCTATTATA
25908360 TT
1 TT
25908362 AATAACTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTCTTTATTTTTCTATTATA
Found at i:25908822 original size:39 final size:39
Alignment explanation
Indices: 25908739--25908985 Score: 201
Period size: 39 Copynumber: 6.3 Consensus size: 39
25908729 GTCATTACAT
** * * * *
25908739 ATTCAGTATATTTGGTAAGTTTTGCTTGCTTGAGCAACA
1 ATTCAGTATATTCAGTAAGTTTTGCTCGATTGAACAAAA
* * * * *
25908778 TTTTAGTATATTCAGTGAGCTTTGCTCAATTGAACAAAA
1 ATTCAGTATATTCAGTAAGTTTTGCTCGATTGAACAAAA
* * * * * *
25908817 ATTTAGTATGTTCAATAAGTTTTTCTCGATTAAACAACA
1 ATTCAGTATATTCAGTAAGTTTTGCTCGATTGAACAAAA
* * *
25908856 ATTCAATATATTC-GATAAGTTTTGCTCAATT-AAGCAACA
1 ATTCAGTATATTCAG-TAAGTTTTGCTCGATTGAA-CAAAA
* * * * *
25908895 ATTCAGTATATCCAGTAAGTTTTGCTTGTTTGAGCAACA
1 ATTCAGTATATTCAGTAAGTTTTGCTCGATTGAACAAAA
* * * *
25908934 TTTCAGTATATTCAGAAAGTTTTGCTCGATTGAGCAATA
1 ATTCAGTATATTCAGTAAGTTTTGCTCGATTGAACAAAA
25908973 ATTCAGTATATTC
1 ATTCAGTATATTC
25908986 GATATTCCAT
Statistics
Matches: 165, Mismatches: 39, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
38 2 0.01
39 161 0.98
40 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (39 bp):
ATTCAGTATATTCAGTAAGTTTTGCTCGATTGAACAAAA
Found at i:25916990 original size:26 final size:26
Alignment explanation
Indices: 25916960--25917016 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
25916950 TTTTTCCTTT
25916960 AAATAGCAAT-TTTGAAATAAATATTA
1 AAATAGCAATATTTGAAA-AAATATTA
** * *
25916986 AAATATTAATATTTGAAACAATTTTA
1 AAATAGCAATATTTGAAAAAATATTA
25917012 AAATA
1 AAATA
25917017 TTAGCTAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.37
Consensus pattern (26 bp):
AAATAGCAATATTTGAAAAAATATTA
Found at i:25917157 original size:14 final size:14
Alignment explanation
Indices: 25917128--25917160 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
25917118 TTTTTAAAAT
25917128 ATTAATAATATTAA
1 ATTAATAATATTAA
25917142 ATTAA-AATATTAA
1 ATTAATAATATTAA
*
25917155 AATAAT
1 ATTAAT
25917161 TACAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATTAATAATATTAA
Found at i:25917626 original size:49 final size:49
Alignment explanation
Indices: 25917572--25917671 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
25917562 TAATTCTCCT
25917572 TAGTAATATTTTAACCCTAATTAATTTTAATTAATGAAATAAATTAATG
1 TAGTAATATTTTAACCCTAATTAATTTTAATTAATGAAATAAATTAATG
25917621 TAGTAATATTTTAACCCTAATTAATTTTAATTAATGAAATAAATTAATG
1 TAGTAATATTTTAACCCTAATTAATTTTAATTAATGAAATAAATTAATG
25917670 TA
1 TA
25917672 AAACACTTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (49 bp):
TAGTAATATTTTAACCCTAATTAATTTTAATTAATGAAATAAATTAATG
Found at i:25921053 original size:30 final size:30
Alignment explanation
Indices: 25921019--25921077 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
25921009 GGGTGGCCAC
*
25921019 ACGGGTGTGTGCCGCACACAGGCAGTCTAT
1 ACGGGTGTATGCCGCACACAGGCAGTCTAT
* * *
25921049 ACGGGTGTATGCTGCACACGGGTAGTCTA
1 ACGGGTGTATGCCGCACACAGGCAGTCTA
25921078 CATAACTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.34, T:0.22
Consensus pattern (30 bp):
ACGGGTGTATGCCGCACACAGGCAGTCTAT
Found at i:25921276 original size:21 final size:21
Alignment explanation
Indices: 25921252--25921291 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
25921242 TCACACGGGT
25921252 GTGTGCCCCCTCCACATAGGC
1 GTGTGCCCCCTCCACATAGGC
***
25921273 GTGTGTGGCCTCCACATAG
1 GTGTGCCCCCTCCACATAG
25921292 AAGTGTAGAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.35, G:0.28, T:0.23
Consensus pattern (21 bp):
GTGTGCCCCCTCCACATAGGC
Found at i:25923714 original size:41 final size:41
Alignment explanation
Indices: 25923653--25923773 Score: 181
Period size: 41 Copynumber: 2.9 Consensus size: 41
25923643 ATTTTGAGTC
*
25923653 CACACGGCATGTCACACGGGCGTGTGATCAGACCGTGTGAGA
1 CACACGGCTTG-CACACGGGCGTGTGATCAGACCGTGTGAGA
*
25923695 CATACGGCTTGCACACGGGCGTGTGATCAGACCGTGTGAGA
1 CACACGGCTTGCACACGGGCGTGTGATCAGACCGTGTGAGA
* *
25923736 CACACGGCTTGCACACGGGCATGTTGAT-AGACTGTGTG
1 CACACGGCTTGCACACGGGCGTG-TGATCAGACCGTGTG
25923774 TCCCCTGCAT
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
41 60 0.82
42 13 0.18
ACGTcount: A:0.22, C:0.25, G:0.33, T:0.20
Consensus pattern (41 bp):
CACACGGCTTGCACACGGGCGTGTGATCAGACCGTGTGAGA
Found at i:25927958 original size:20 final size:21
Alignment explanation
Indices: 25927933--25927979 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
25927923 GGTATTTCAC
*
25927933 ATTTTTTGT-ATTTTAAAAAT
1 ATTTTTAGTGATTTTAAAAAT
25927953 ATTTTTAGTGATTTT-AAAAT
1 ATTTTTAGTGATTTTAAAAAT
*
25927973 TTTTTTA
1 ATTTTTA
25927980 TTTAATTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (21 bp):
ATTTTTAGTGATTTTAAAAAT
Found at i:25928227 original size:26 final size:25
Alignment explanation
Indices: 25928190--25928239 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
25928180 TGATATTACC
*
25928190 CTAAAAACTTGTATAAAGTTTTTCG
1 CTAAAAACTTGTATAAAGTGTTTCG
*
25928215 CTAACAAATTTGTATAAAGTGTTTC
1 CTAA-AAACTTGTATAAAGTGTTTC
25928240 TTTTAGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (25 bp):
CTAAAAACTTGTATAAAGTGTTTCG
Found at i:25928363 original size:19 final size:21
Alignment explanation
Indices: 25928339--25928386 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
25928329 TATTTTTTTC
*
25928339 ATGAAAAAT-AGTT-TAGTCA
1 ATGAAAAATAAGTTATAGTAA
25928358 ATGAAAAATAAGTTATAGTAA
1 ATGAAAAATAAGTTATAGTAA
*
25928379 ACGAAAAA
1 ATGAAAAA
25928387 ATGTAAGTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 9 0.36
20 4 0.16
21 12 0.48
ACGTcount: A:0.56, C:0.04, G:0.15, T:0.25
Consensus pattern (21 bp):
ATGAAAAATAAGTTATAGTAA
Found at i:25928609 original size:26 final size:26
Alignment explanation
Indices: 25928576--25928642 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 26
25928566 ATACATATTT
25928576 AATTATTTATATTTAATCA-TATAATA
1 AATTATTTATATTT-ATCATTATAATA
* *
25928602 AATTATTTATATTTATTATTTTAATA
1 AATTATTTATATTTATCATTATAATA
25928628 AATTATTTAGTATTT
1 AATTATTTA-TATTT
25928643 TAATTTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
25 3 0.08
26 29 0.78
27 5 0.14
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (26 bp):
AATTATTTATATTTATCATTATAATA
Found at i:25928648 original size:26 final size:25
Alignment explanation
Indices: 25928576--25928650 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 25
25928566 ATACATATTT
*
25928576 AATTATTTATA-TTTAATCATATAATA
1 AATTATTTATATTTTAAT--TTTAATA
*
25928602 AATTATTTATATTTATTATTTTAATA
1 AATTATTTATATTT-TAATTTTAATA
25928628 AATTATTTAGTATTTTAATTTTA
1 AATTATTTA-TATTTTAATTTTA
25928651 TTTTAATAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
26 33 0.77
27 7 0.16
28 3 0.07
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (25 bp):
AATTATTTATATTTTAATTTTAATA
Found at i:25928690 original size:16 final size:17
Alignment explanation
Indices: 25928654--25928690 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
25928644 AATTTTATTT
25928654 TAATAATAATTTTTAAA
1 TAATAATAATTTTTAAA
25928671 -AATAATAA-TTTTAAA
1 TAATAATAATTTTTAAA
25928686 TAATA
1 TAATA
25928691 TTCTTCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAATAATTTTTAAA
Found at i:25928728 original size:28 final size:28
Alignment explanation
Indices: 25928692--25928775 Score: 71
Period size: 28 Copynumber: 2.8 Consensus size: 28
25928682 TAAATAATAT
* *
25928692 TCTTCATATATTATTGAA-AAATATTTAA
1 TCTTAATATATTAAT-AATAAATATTTAA
*
25928720 TCTTAATATTTTAATAATAAATATTTATTA
1 TCTTAATATATTAATAATAAATATTTA--A
25928750 TACTTATAAATATATTAATAATAAAT
1 T-C-T-T-AATATATTAATAATAAAT
25928776 GTTTTGTAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
27 2 0.04
28 21 0.47
30 2 0.04
31 1 0.02
32 1 0.02
33 1 0.02
34 17 0.38
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.48
Consensus pattern (28 bp):
TCTTAATATATTAATAATAAATATTTAA
Found at i:25928744 original size:15 final size:15
Alignment explanation
Indices: 25928724--25928780 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
25928714 ATTTAATCTT
25928724 AATATTTTAATAATA
1 AATATTTTAATAATA
*
25928739 AATATTTATTATACTTATA
1 AATA-TT-TTA-A-TAATA
*
25928758 AATATATTAATAATA
1 AATATTTTAATAATA
*
25928773 AATGTTTT
1 AATATTTT
25928781 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 14 0.42
16 3 0.09
17 6 0.18
18 2 0.06
19 8 0.24
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:25933342 original size:8 final size:8
Alignment explanation
Indices: 25933325--25933357 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
25933315 CTTACCTATT
25933325 AAAG-TTC
1 AAAGCTTC
25933332 AAAGCTTC
1 AAAGCTTC
25933340 AAAGCTTC
1 AAAGCTTC
25933348 AAAGCTTC
1 AAAGCTTC
25933356 AA
1 AA
25933358 TTCCTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 4 0.16
8 21 0.84
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.24
Consensus pattern (8 bp):
AAAGCTTC
Found at i:25933403 original size:25 final size:26
Alignment explanation
Indices: 25933358--25933417 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 26
25933348 AAAGCTTCAA
* *
25933358 TTCCTTCTTTTATTTCTTTCTCT-TT
1 TTCCTTCTTTTATTCCCTTCTCTGTT
*
25933383 TTCCTTCTTTCT-TTCCCTTCTGTGTT
1 TTCCTTCTTT-TATTCCCTTCTCTGTT
*
25933409 TTCGTTCTT
1 TTCCTTCTT
25933418 CATTCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 18 0.62
26 11 0.38
ACGTcount: A:0.02, C:0.27, G:0.05, T:0.67
Consensus pattern (26 bp):
TTCCTTCTTTTATTCCCTTCTCTGTT
Found at i:25934534 original size:22 final size:23
Alignment explanation
Indices: 25934492--25934536 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
25934482 AAAAAAATAT
25934492 GTATATATAAATTATATTATAAG
1 GTATATATAAATTATATTATAAG
*
25934515 GTATA-ATAACTTAGTA-TATAAG
1 GTATATATAAATTA-TATTATAAG
25934537 AAAAGTAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (23 bp):
GTATATATAAATTATATTATAAG
Found at i:25935056 original size:15 final size:15
Alignment explanation
Indices: 25935048--25935077 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25935038 ATATCATATA
25935048 AAATAATATAATAAT
1 AAATAATATAATAAT
*
25935063 AAATAATAAAATAAT
1 AAATAATATAATAAT
25935078 TTTATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATAATATAATAAT
Found at i:25936792 original size:40 final size:40
Alignment explanation
Indices: 25936747--25936823 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
25936737 CCAAACTTTG
25936747 ATTTGTTCTCTGACAACACAGAGATGCCAAATCATCTCCA
1 ATTTGTTCTCTGACAACACAGAGATGCCAAATCATCTCCA
*
25936787 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT
1 ATTTGTTCTCTGACAACACAGAGATGCCAAATCATCT
25936824 TAGATTTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (40 bp):
ATTTGTTCTCTGACAACACAGAGATGCCAAATCATCTCCA
Found at i:25936831 original size:40 final size:41
Alignment explanation
Indices: 25936746--25936833 Score: 144
Period size: 40 Copynumber: 2.2 Consensus size: 41
25936736 GCCAAACTTT
25936746 GATTTGTTCTCTGACAACACAGAGATGCCAAATCATCTCCA
1 GATTTGTTCTCTGACAACACAGAGATGCCAAATCATCTCCA
* *
25936787 -ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCT-TA
1 GATTTGTTCTCTGACAACACAGAGATGCCAAATCATCTCCA
25936826 GATTTGTT
1 GATTTGTT
25936834 TGAGAACATC
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.33
Consensus pattern (41 bp):
GATTTGTTCTCTGACAACACAGAGATGCCAAATCATCTCCA
Found at i:25937076 original size:43 final size:42
Alignment explanation
Indices: 25937028--25937162 Score: 108
Period size: 37 Copynumber: 3.2 Consensus size: 42
25937018 AATCATCTTA
25937028 GATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTC
1 GATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATG-CCTC
* *
25937071 GATTTGTTCCTTGTA-AACA-C-AAGAATACCAAATCAT-CT-TG----
1 GATTTG-T--TTG-AGAACATCTGAGAGT--CAAATC-TGCTATGCCTC
25937111 GATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGGCCTC
1 GATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTAT-GCCTC
25937154 GATTTGTTT
1 GATTTGTTT
25937163 CTTGTAACCA
Statistics
Matches: 71, Mismatches: 4, Indels: 34
0.65 0.04 0.31
Matches are distributed among these distances:
36 2 0.03
37 15 0.21
38 2 0.03
39 6 0.08
40 6 0.08
43 15 0.21
44 5 0.07
45 3 0.04
46 15 0.21
47 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (42 bp):
GATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGCCTC
Found at i:25937125 original size:83 final size:83
Alignment explanation
Indices: 25937015--25937196 Score: 328
Period size: 83 Copynumber: 2.2 Consensus size: 83
25937005 TACAGAGATG
* *
25937015 CCAAATCATCTTAGATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTC
1 CCAAATCATCTTGGATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGGCCTCGATTTGTTC
25937080 CTTGTAAACACAAGAATA
66 CTTGTAAACACAAGAATA
*
25937098 CCAAATCATCTTGGATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGGCCTCGATTTGTTT
1 CCAAATCATCTTGGATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGGCCTCGATTTGTTC
*
25937163 CTTGTAACCACAAGAATA
66 CTTGTAAACACAAGAATA
25937181 CCAAATCATCTTGGAT
1 CCAAATCATCTTGGAT
25937197 CTGCTTCAGT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 95 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (83 bp):
CCAAATCATCTTGGATTTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGGCCTCGATTTGTTC
CTTGTAAACACAAGAATA
Found at i:25937440 original size:119 final size:119
Alignment explanation
Indices: 25937119--25937590 Score: 786
Period size: 119 Copynumber: 4.0 Consensus size: 119
25937109 TGGATTTGTT
* * *
25937119 TGAGAACATCTGAGAGTCAAATCTGCTATGGCCTCGATTTGTTTCTTGTAACCACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* * *** *
25937184 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGG-CTAGATCTGCTATATC
66 AATCATCTTGGATCTGCTTCAATCTAATTGTCTGAAGGTC-AAATCTGCTATATC
* *
25937238 TGAGAACATCTAAGAGTCAAATCTACTATGT-CTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
*
25937302 AATCATCTTGGATCTGCTTCAATCTAATTGTCTAAAGGTCAAATCTGCTATATC
66 AATCATCTTGGATCTGCTTCAATCTAATTGTCTGAAGGTCAAATCTGCTATATC
25937356 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* *
25937421 AGTCATCTTGGATCTGCTTCAATCTAATTGTCTGAAGGTCAAATCTACTATATC
66 AATCATCTTGGATCTGCTTCAATCTAATTGTCTGAAGGTCAAATCTGCTATATC
25937475 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
*
25937540 AATTATCTTGGATCTGCTTCAATCTAATTGTCTGAAGGTCAAATCTGCTAT
66 AATCATCTTGGATCTGCTTCAATCTAATTGTCTGAAGGTCAAATCTGCTAT
25937591 GCTACAACCT
Statistics
Matches: 331, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
118 105 0.32
119 226 0.68
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.33
Consensus pattern (119 bp):
TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
AATCATCTTGGATCTGCTTCAATCTAATTGTCTGAAGGTCAAATCTGCTATATC
Found at i:25949431 original size:22 final size:23
Alignment explanation
Indices: 25949389--25949433 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
25949379 AAAAAAATAT
25949389 GTATATATAAATTATATTATAAG
1 GTATATATAAATTATATTATAAG
*
25949412 GTATA-ATAACTTAGTA-TATAAG
1 GTATATATAAATTA-TATTATAAG
25949434 AAAAGTAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (23 bp):
GTATATATAAATTATATTATAAG
Found at i:25950003 original size:98 final size:93
Alignment explanation
Indices: 25949849--25950027 Score: 209
Period size: 100 Copynumber: 1.9 Consensus size: 93
25949839 GAAAACATAT
* * * *
25949849 AATAATATAATAACATAAAAAAATTATTTATTTATATAATTATCATTTTTTTAAAAATATTTAAT
1 AATAATATAATAACATAAAAAAATAATTTATTTATAT-ATTAT-A--ATTTTAAAAAAAATT-AT
*
25949914 TAATAAAATATAAACAATATATATATCATATAA
61 TAAGAAAATATAAACAATATATATATCATATAA
*
25949947 AATAATATAATAATACATAATAAAATAATTT-TATTATAT-TTATAATTTTAAAAAAAATTATTA
1 AATAATATAAT-A-ACATAAAAAAATAATTTAT-TTATATATTATAATTTTAAAAAAAATTATTA
*
25950010 AGAAAATATAAATAATAT
63 AGAAAATATAAACAATAT
25950028 GTATGCCATA
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
94 20 0.28
95 12 0.17
97 1 0.01
98 15 0.21
99 2 0.03
100 21 0.30
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (93 bp):
AATAATATAATAACATAAAAAAATAATTTATTTATATATTATAATTTTAAAAAAAATTATTAAGA
AAATATAAACAATATATATATCATATAA
Found at i:25950104 original size:16 final size:16
Alignment explanation
Indices: 25950077--25950114 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
25950067 ATATAAAATA
25950077 TAAAAT-AATAAAGTT
1 TAAAATAAATAAAGTT
*
25950092 TAAAATAAATAAATTT
1 TAAAATAAATAAAGTT
*
25950108 TTAAATA
1 TAAAATA
25950115 TAATGGGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (16 bp):
TAAAATAAATAAAGTT
Found at i:25951241 original size:17 final size:17
Alignment explanation
Indices: 25951219--25951258 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
25951209 ATATTATATA
* *
25951219 AATATATTTCACTTAAT
1 AATATATATAACTTAAT
*
25951236 AATATATATAATTTAAT
1 AATATATATAACTTAAT
25951253 AATATA
1 AATATA
25951259 CTTATATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATATATAACTTAAT
Found at i:25957346 original size:52 final size:49
Alignment explanation
Indices: 25957163--25957355 Score: 200
Period size: 47 Copynumber: 4.0 Consensus size: 49
25957153 TGCACATAGT
* ** * *
25957163 CACATATCACA-TACCGAGGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACACT-CCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* * *
25957211 CACATATCACACT--GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
25957258 CACATATCACA--CCGATGCCATATCCCGGATATGGTCTTATACGGAAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
25957305 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAA
1 CACATATCACA---CTCCGATGCCATAGCCCAGATATGGTCTTATACGGAA
25957356 ATCACATTTC
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
46 25 0.20
47 54 0.44
48 11 0.09
49 1 0.01
52 31 0.25
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (49 bp):
CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
Found at i:25961619 original size:56 final size:57
Alignment explanation
Indices: 25961553--25961698 Score: 215
Period size: 56 Copynumber: 2.6 Consensus size: 57
25961543 CAACTTGAGG
* *
25961553 TTATGGGATATTATCTTTTTGCAATTTAATTCCTAATGAGATATTATAGGATATTA-
1 TTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAGGATATTAC
* * **
25961609 TTATGGGATATTATCTCTTAGCAATTTGATTCCTAATGGGATATTATATTATATTAC
1 TTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAGGATATTAC
*
25961666 TGA-GGGATATTATCTTTTAGCAATTTGATTCCT
1 TTATGGGATATTATCTTTTAGCAATTTGATTCCT
25961699 GTGTGACTAC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
56 79 0.98
57 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (57 bp):
TTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAGGATATTAC
Found at i:25969156 original size:51 final size:51
Alignment explanation
Indices: 25969082--25969196 Score: 178
Period size: 51 Copynumber: 2.3 Consensus size: 51
25969072 CTCAAGCTTA
*
25969082 CTTCATACTTT-ATCCAAAATTATTACCTTGTTGCTCTAGCTTCAATAAGAG
1 CTTCATA-TTTCATCCAAAATTATTACCTTGTTGCTCTAGCTTCAACAAGAG
** *
25969133 CTTCATATTTCATCCGGAATTATTACTTTGTTGCTCTAGCTTCAACAAGAG
1 CTTCATATTTCATCCAAAATTATTACCTTGTTGCTCTAGCTTCAACAAGAG
25969184 CTTCATATTTCAT
1 CTTCATATTTCAT
25969197 TCAGATAACT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 3 0.05
51 56 0.95
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (51 bp):
CTTCATATTTCATCCAAAATTATTACCTTGTTGCTCTAGCTTCAACAAGAG
Found at i:25970424 original size:11 final size:11
Alignment explanation
Indices: 25970404--25970458 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
25970394 TTTTTATACT
25970404 TAAT-AAATAA
1 TAATAAAATAA
25970414 TAATAAAATAA
1 TAATAAAATAA
*
25970425 TAA-AAAATAT
1 TAATAAAATAA
* *
25970435 TATTAAAATAT
1 TAATAAAATAA
*
25970446 TAATAAATTAA
1 TAATAAAATAA
25970457 TA
1 TA
25970459 TTTATCTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
10 12 0.32
11 26 0.68
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:25970441 original size:21 final size:21
Alignment explanation
Indices: 25970408--25970458 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
25970398 TATACTTAAT
25970408 AAATAATAATAAAATAATAAA
1 AAATAATAATAAAATAATAAA
* * *
25970429 AAATATTATTAAAATATTAATA
1 AAATAATAATAAAATAATAA-A
*
25970451 AATTAATA
1 AAATAATA
25970459 TTTATCTAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AAATAATAATAAAATAATAAA
Found at i:25975017 original size:26 final size:26
Alignment explanation
Indices: 25974984--25975034 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25974974 GTGAAAACAA
25974984 AGTTTATG-ACTGTGTGGTCACAACTG
1 AGTTTATGAAC-GTGTGGTCACAACTG
25975010 AGTTTATGAACGTGTGGTCACAACT
1 AGTTTATGAACGTGTGGTCACAACT
25975035 AAGCCTCTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
AGTTTATGAACGTGTGGTCACAACTG
Found at i:25987203 original size:18 final size:19
Alignment explanation
Indices: 25987166--25987206 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
25987156 CTAGTAACTC
25987166 TATAAAAATTCAAAATATT
1 TATAAAAATTCAAAATATT
* *
25987185 TATAAAAGTTCTAAA-ATT
1 TATAAAAATTCAAAATATT
25987203 TATA
1 TATA
25987207 TTTTTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (19 bp):
TATAAAAATTCAAAATATT
Found at i:25990046 original size:35 final size:35
Alignment explanation
Indices: 25990007--25990075 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
25989997 ACTTGCCTCT
25990007 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
25990042 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
25990076 TCACACACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.51, G:0.12, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:25990102 original size:34 final size:35
Alignment explanation
Indices: 25990024--25990103 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
25990014 CTCCCATGCT
* * * * *
25990024 GTCTGCCACCAGCACCACTCCCACTCTCCCATGCT
1 GTCTGCCACCAGCACCACTCACACACCCCCATACC
25990059 GTCTGCCACCAGCACCA-TCACACACCCCCATACC
1 GTCTGCCACCAGCACCACTCACACACCCCCATACC
*
25990093 GTCTACCACCA
1 GTCTGCCACCA
25990104 CCATGCCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 22 0.56
35 17 0.44
ACGTcount: A:0.23, C:0.51, G:0.10, T:0.16
Consensus pattern (35 bp):
GTCTGCCACCAGCACCACTCACACACCCCCATACC
Found at i:25992782 original size:44 final size:44
Alignment explanation
Indices: 25992720--25993232 Score: 268
Period size: 44 Copynumber: 11.8 Consensus size: 44
25992710 CTGTATTTGG
* * ** *
25992720 CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* * * * * * * **
25992764 TAGTGGAGCAGGTCGAAGACGGCGGATTTTACCTCCCTGA-TTA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* * * * * *
25992807 CAGTGGAGTACATTGAAGCTGGTAGTTC-TATCTCCCTGGGCAA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* ** *
25992850 CAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* * * * * * * * **
25992894 TAGTGGAGCAGGTTGAAGACGGCGGATTTTACCTCCCTGA-TTA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* * * * * *
25992937 CAGTGGAGTACATTGAAGCTGGTAGTTC-TATCTCCCTGGGCAA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* ** *
25992980 CAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* * * * * * * * **
25993024 TAGTGGAGCAGGTTGAAGACGGCGGATTTTACCTCCCTGA-TTA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* * * * * *
25993067 CAGTGGAGTACATTGAAGCTGGTAGTTC-TATCTCCCTGGGCAA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* ** *
25993110 CAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* * * * * * * **
25993154 TAGTGGAGCAGGTCGAAGACGGCGGATTTTACCTCCCTGA-TTA
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
* * * * *
25993197 CAGTGGAGTACATTGAAGCTGGTAGTTC-TATCTCCC
1 CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCC
25993233 GGGGAATGAA
Statistics
Matches: 323, Mismatches: 140, Indels: 14
0.68 0.29 0.03
Matches are distributed among these distances:
42 34 0.11
43 137 0.42
44 152 0.47
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (44 bp):
CAGTGGAGTAGATCGAAGATGGCAGATCTTATCTCCCTGAGCAA
Found at i:25992853 original size:43 final size:43
Alignment explanation
Indices: 25992806--25993232 Score: 191
Period size: 43 Copynumber: 9.9 Consensus size: 43
25992796 CTCCCTGATT
* *
25992806 ACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCA
1 ACAGTGGAGTAGATTGAAGCTGGCAGTTCTATCTCCCTGGGCA
* * * ** * **
25992849 ACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCA
1 ACAGTGGAGTAGATTGAAGCTGGCAGTTC-TATCTCCCTGGGCA
* * * * * * ***
25992893 ATAGTGGAGCAGGTTGAAGAC-GGCGGATTTTACCTCCCT-GATT
1 ACAGTGGAGTAGATTGAAG-CTGGCAG-TTCTATCTCCCTGGGCA
* *
25992936 ACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCA
1 ACAGTGGAGTAGATTGAAGCTGGCAGTTCTATCTCCCTGGGCA
* * * ** * **
25992979 ACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCA
1 ACAGTGGAGTAGATTGAAGCTGGCAGTTC-TATCTCCCTGGGCA
* * * * * * ***
25993023 ATAGTGGAGCAGGTTGAAGAC-GGCGGATTTTACCTCCCT-GATT
1 ACAGTGGAGTAGATTGAAG-CTGGCAG-TTCTATCTCCCTGGGCA
* *
25993066 ACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCA
1 ACAGTGGAGTAGATTGAAGCTGGCAGTTCTATCTCCCTGGGCA
* * * ** * **
25993109 ACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCA
1 ACAGTGGAGTAGATTGAAGCTGGCAGTTC-TATCTCCCTGGGCA
* * * * * * * ***
25993153 ATAGTGGAGCAGGTCGAAGAC-GGCGGATTTTACCTCCCT-GATT
1 ACAGTGGAGTAGATTGAAG-CTGGCAG-TTCTATCTCCCTGGGCA
* *
25993196 ACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCC
1 ACAGTGGAGTAGATTGAAGCTGGCAGTTCTATCTCCC
25993233 GGGGAATGAA
Statistics
Matches: 262, Mismatches: 108, Indels: 29
0.66 0.27 0.07
Matches are distributed among these distances:
42 32 0.12
43 118 0.45
44 109 0.42
45 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
ACAGTGGAGTAGATTGAAGCTGGCAGTTCTATCTCCCTGGGCA
Found at i:25992904 original size:130 final size:130
Alignment explanation
Indices: 25992638--25993232 Score: 1019
Period size: 130 Copynumber: 4.6 Consensus size: 130
25992628 TTGGCAGCGA
* * * * * * * **
25992638 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
***** *
25992703 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGT
66 TATCTCCCTG--GGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGT
25992768 GG
129 GG
25992770 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
25992835 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
66 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
*
25992900 AGCAGGTTGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
25992965 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
66 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
*
25993030 AGCAGGTTGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
25993095 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
66 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
25993160 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
25993225 TATCTCCC
66 TATCTCCC
25993233 GGGGAATGAA
Statistics
Matches: 446, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
130 380 0.85
132 66 0.15
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (130 bp):
AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
Found at i:25993335 original size:41 final size:42
Alignment explanation
Indices: 25993239--25993339 Score: 132
Period size: 43 Copynumber: 2.4 Consensus size: 42
25993229 TCCCGGGGAA
* * * *
25993239 TGAAGTAGATCGAAGATAGCTGATCTTGTCTTCCTATATTGG
1 TGAAGTAGATCGAAGATAGCAGATATTGTCTTCCCATACTGG
*
25993281 TAAGAAGTGGATCGAAGAT-GCAGATATTGTCTTCCCATACTGG
1 T--GAAGTAGATCGAAGATAGCAGATATTGTCTTCCCATACTGG
25993324 TGAAGTAGATCGAAGA
1 TGAAGTAGATCGAAGA
25993340 AAACAGATCA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
41 14 0.27
42 1 0.02
43 21 0.41
44 15 0.29
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
TGAAGTAGATCGAAGATAGCAGATATTGTCTTCCCATACTGG
Found at i:25993550 original size:50 final size:50
Alignment explanation
Indices: 25993397--25993862 Score: 203
Period size: 50 Copynumber: 9.4 Consensus size: 50
25993387 TAAAGCTACG
* * *
25993397 ACGGCGAATCTT-GTTCCCCGACATTGCAA-TTAAAGAGATCGAAGCCACA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA-AGATTGAAGCCACA
* * * * * * * ** ** * * *
25993446 ACGGTGAATCTCACTTCTCTGGCAGTACAGTGGAGCAGATTAAAGCTACG
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTTAAAAGATTGAAGCCACA
* * *
25993496 ACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCGCA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTTAAAAGATTGAAGCCACA
* * * * ** ** *
25993546 ACGGCAAATCTTACTTTCCTGGCGA-TGCAGTGGATCAGATTGAAGCTACA
1 ACGGCGAATCTTACTTCCCTGAC-ATTGCAATTTAAAAGATTGAAGCCACA
* * * * *
25993596 ATGGCGACTCTT-GTTCCCAGACATTGCAA-TTAAAGAGATCGAAGCCACA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA-AGATTGAAGCCACA
* * * * * * ** ** * * *
25993645 ACGGCGAATCTCACTTCTCTGGCAGTACAGTGGAGCAGATTAAAGCTACG
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTTAAAAGATTGAAGCCACA
* * * * *
25993695 ACGGTGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAACCGCA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTTAAAAGATTGAAGCCACA
* * ** * ** * *
25993745 ACGGTGAATCTTACTTTCCTGGTGA-TGCAGTGGATCAA-ATTGAAGCTACA
1 ACGGCGAATCTTACTTCCCT-GACATTGCAATTTA-AAAGATTGAAGCCACA
* * * ** *
25993795 ATGGCGAATCTT-GTCCCCCAACATTGCAA-TTAAAGAGATCGAAGCCACA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA-AGATTGAAGCCACA
*
25993844 ACGGCGAATCTCACTTCCC
1 ACGGCGAATCTTACTTCCC
25993863 CCTAAGCAGT
Statistics
Matches: 278, Mismatches: 126, Indels: 25
0.65 0.29 0.06
Matches are distributed among these distances:
47 1 0.00
48 5 0.02
49 68 0.24
50 197 0.71
51 7 0.03
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (50 bp):
ACGGCGAATCTTACTTCCCTGACATTGCAATTTAAAAGATTGAAGCCACA
Found at i:25993577 original size:100 final size:100
Alignment explanation
Indices: 25993365--25993859 Score: 574
Period size: 99 Copynumber: 5.0 Consensus size: 100
25993355 GTTACCTTCC
** *
25993365 CTGGCAGTGTAGTGGAGCAAATTAAAGCTACGACGGCGAATCTTGTTCCCCGACATTGCAATTAA
1 CTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGTTCCCCGACATTGCAATTAA
*
25993430 AGAGATCGAAGCCACAACGGTGAATCTCAC-TTCT
66 AGAGATCGAAGCCACAACGGCGAATCTCACTTTCT
* *
25993464 CTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTT
1 CTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG-TTCCCCGACATTGCAA-TT
* * * *
25993529 AAA-AGATTGAAGCCGCAACGGCAAATCTTACTTTC-
64 AAAGAGATCGAAGCCACAACGGCGAATCTCACTTTCT
* * * * * * *
25993564 CTGGC-GATGCAGTGGATCAGATTGAAGCTACAATGGCGACTCTTGTTCCCAGACATTGCAATTA
1 CTGGCAG-TACAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGTTCCCCGACATTGCAATTA
25993628 AAGAGATCGAAGCCACAACGGCGAATCTCAC-TTCT
65 AAGAGATCGAAGCCACAACGGCGAATCTCACTTTCT
* * *
25993663 CTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTT
1 CTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG-TTCCCCGACATTGCAA-TT
* * * * *
25993728 AAA-AGATTGAAACCGCAACGGTGAATCTTACTTTC-
64 AAAGAGATCGAAGCCACAACGGCGAATCTCACTTTCT
* * * * * * * * *
25993763 CTGG-TGATGCAGTGGATCAAATTGAAGCTACAATGGCGAATCTTGTCCCCCAACATTGCAATTA
1 CTGGCAG-TACAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGTTCCCCGACATTGCAATTA
25993827 AAGAGATCGAAGCCACAACGGCGAATCTCACTT
65 AAGAGATCGAAGCCACAACGGCGAATCTCACTT
25993860 CCCCCTAAGC
Statistics
Matches: 331, Mismatches: 53, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
98 13 0.04
99 155 0.47
100 147 0.44
101 16 0.05
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (100 bp):
CTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGTTCCCCGACATTGCAATTAA
AGAGATCGAAGCCACAACGGCGAATCTCACTTTCT
Found at i:25993729 original size:199 final size:199
Alignment explanation
Indices: 25993375--25993860 Score: 830
Period size: 199 Copynumber: 2.4 Consensus size: 199
25993365 CTGGCAGTGT
* * * * *
25993375 AGTGGAGCAAATTAAAGCTACGACGGCGAATCTTGTTCCCCGACATTGCAATTAAAGAGATCGAA
1 AGTGGATCAAATTGAAGCTACAATGGCGAATCTTGTTCCCAGACATTGCAATTAAAGAGATCGAA
*
25993440 GCCACAACGGTGAATCTCACTTCTCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAAT
66 GCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAAT
*
25993505 CTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCGCAACGGCAAATCTTACTTTCCTGGCG
131 CTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAACCGCAACGGCAAATCTTACTTTCCTGGCG
25993570 ATGC
196 ATGC
* *
25993574 AGTGGATCAGATTGAAGCTACAATGGCGACTCTTGTTCCCAGACATTGCAATTAAAGAGATCGAA
1 AGTGGATCAAATTGAAGCTACAATGGCGAATCTTGTTCCCAGACATTGCAATTAAAGAGATCGAA
*
25993639 GCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGTGAAT
66 GCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAAT
** *
25993704 CTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAACCGCAACGGTGAATCTTACTTTCCTGGTG
131 CTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAACCGCAACGGCAAATCTTACTTTCCTGGCG
25993769 ATGC
196 ATGC
*
25993773 AGTGGATCAAATTGAAGCTACAATGGCGAATCTTGTCCCCCA-ACATTGCAATTAAAGAGATCGA
1 AGTGGATCAAATTGAAGCTACAATGGCGAATCTTGT-TCCCAGACATTGCAATTAAAGAGATCGA
25993837 AGCCACAACGGCGAATCTCACTTC
65 AGCCACAACGGCGAATCTCACTTC
25993861 CCCCTAAGCA
Statistics
Matches: 270, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
199 266 0.99
200 4 0.01
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (199 bp):
AGTGGATCAAATTGAAGCTACAATGGCGAATCTTGTTCCCAGACATTGCAATTAAAGAGATCGAA
GCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAAT
CTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAACCGCAACGGCAAATCTTACTTTCCTGGCG
ATGC
Found at i:25994362 original size:35 final size:35
Alignment explanation
Indices: 25994323--25994391 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
25994313 ACTTGCCTCT
25994323 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
25994358 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
25994392 TCACACACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.51, G:0.12, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:25994418 original size:34 final size:35
Alignment explanation
Indices: 25994340--25994419 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
25994330 CTCCCATGCT
* * * * *
25994340 GTCTGCCACCAGCACCACTCCCACTCTCCCATGCT
1 GTCTGCCACCAGCACCACTCACACACCCCCATACC
25994375 GTCTGCCACCAGCACCA-TCACACACCCCCATACC
1 GTCTGCCACCAGCACCACTCACACACCCCCATACC
*
25994409 GTCTACCACCA
1 GTCTGCCACCA
25994420 CCATGCCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 22 0.56
35 17 0.44
ACGTcount: A:0.23, C:0.51, G:0.10, T:0.16
Consensus pattern (35 bp):
GTCTGCCACCAGCACCACTCACACACCCCCATACC
Found at i:25995021 original size:13 final size:13
Alignment explanation
Indices: 25995003--25995041 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
25994993 TTCCATTTCC
*
25995003 CCCTCCTTTCTCT
1 CCCTCCCTTCTCT
25995016 CCCTCCCTTCTCT
1 CCCTCCCTTCTCT
*
25995029 -CTTCCCTTCTCT
1 CCCTCCCTTCTCT
25995041 C
1 C
25995042 TTCCCTCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (13 bp):
CCCTCCCTTCTCT
Found at i:25995036 original size:12 final size:12
Alignment explanation
Indices: 25995019--25995055 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
25995009 TTTCTCTCCC
25995019 TCCCTTCTCTCT
1 TCCCTTCTCTCT
25995031 TCCCTTCTCTCT
1 TCCCTTCTCTCT
25995043 TCCC-TCTCTCT
1 TCCCTTCTCTCT
25995054 TC
1 TC
25995056 TTTTTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:25995050 original size:23 final size:25
Alignment explanation
Indices: 25995010--25995055 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
25995000 TCCCCCTCCT
25995010 TTCTCTCCCTCCCTTCTCTCTTCCC
1 TTCTCTCCCTCCCTTCTCTCTTCCC
*
25995035 TTCTCT-CTTCCC-TCTCTCTTC
1 TTCTCTCCCTCCCTTCTCTCTTC
25995056 TTTTTTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 5 0.25
25 6 0.30
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (25 bp):
TTCTCTCCCTCCCTTCTCTCTTCCC
Found at i:25995532 original size:3 final size:3
Alignment explanation
Indices: 25995526--25995570 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
25995516 GTTGTCTTTA
* * *
25995526 TAT TAT TAG TAT TAT TAG TAT TAC TAT TAT TAT TAT TAT GTAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
25995571 GTATATATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:25995540 original size:9 final size:9
Alignment explanation
Indices: 25995526--25995579 Score: 63
Period size: 9 Copynumber: 5.8 Consensus size: 9
25995516 GTTGTCTTTA
25995526 TATTATTAG
1 TATTATTAG
25995535 TATTATTAG
1 TATTATTAG
* *
25995544 TATTACTAT
1 TATTATTAG
*
25995553 TATTATTAT
1 TATTATTAG
25995562 TATGTATTAG
1 TAT-TATTAG
25995572 TATATATT
1 TAT-TATT
25995580 TTTTATGTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
9 27 0.69
10 12 0.31
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (9 bp):
TATTATTAG
Found at i:25995587 original size:21 final size:22
Alignment explanation
Indices: 25995529--25995588 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 22
25995519 GTCTTTATAT
*
25995529 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
25995550 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
25995572 TATATATT-TT-TTATGTA
1 TAT-TATTATTATTATGTA
25995589 CGTGTATACA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 20 0.57
22 11 0.31
23 4 0.11
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:25995648 original size:24 final size:25
Alignment explanation
Indices: 25995606--25995652 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
25995596 ACATATATAT
*
25995606 ATTTTCATATTTAATATTTTATTTC
1 ATTTTCATATCTAATATTTTATTTC
25995631 ATTTTCAT-TCTAATATTTTATT
1 ATTTTCATATCTAATATTTTATT
25995653 AATCTTATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.64
Consensus pattern (25 bp):
ATTTTCATATCTAATATTTTATTTC
Found at i:25995698 original size:3 final size:3
Alignment explanation
Indices: 25995685--25995726 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
25995675 TATTCCAATG
* * *
25995685 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTT TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
25995727 GTTTACGCTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:25996026 original size:18 final size:19
Alignment explanation
Indices: 25995967--25996062 Score: 58
Period size: 18 Copynumber: 5.1 Consensus size: 19
25995957 ATATACGTAC
*
25995967 TTATACATACTTAAATATAT
1 TTAT-CATACTTACATATAT
* * *
25995987 TTTTCATA-TTTCATAATTT
1 TTATCATACTTACAT-ATAT
25996006 TTAT-ATACTTACATATAT
1 TTATCATACTTACATATAT
*
25996024 TTATGCATATTTTACATCATA-
1 TTAT-CATA-CTTACAT-ATAT
*
25996045 -TA-CATACTTATATATAT
1 TTATCATACTTACATATAT
25996062 T
1 T
25996063 CTTTATATTC
Statistics
Matches: 58, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
16 3 0.05
17 5 0.09
18 18 0.31
19 15 0.26
20 8 0.14
21 6 0.10
22 3 0.05
ACGTcount: A:0.36, C:0.11, G:0.01, T:0.51
Consensus pattern (19 bp):
TTATCATACTTACATATAT
Found at i:25996052 original size:38 final size:36
Alignment explanation
Indices: 25995968--25996062 Score: 93
Period size: 38 Copynumber: 2.6 Consensus size: 36
25995958 TATACGTACT
* *
25995968 TATACATACTTAAATATATTTTTCATATTTCATAATT
1 TATACATACTTAAATATATTTTGCATATTT-ATAATA
* * *
25996005 TTTATATACTTACATATATTTATGCATATTT-TACATCA
1 TATACATACTTAAATATATTT-TGCATATTTATA-AT-A
*
25996043 TATACATACTTATATATATT
1 TATACATACTTAAATATATT
25996063 CTTTATATTC
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
36 2 0.04
37 20 0.43
38 25 0.53
ACGTcount: A:0.37, C:0.12, G:0.01, T:0.51
Consensus pattern (36 bp):
TATACATACTTAAATATATTTTGCATATTTATAATA
Found at i:26005410 original size:3 final size:3
Alignment explanation
Indices: 26005402--26005441 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
26005392 TAATGTCTCA
*
26005402 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26005442 TATGATTCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:26005952 original size:28 final size:28
Alignment explanation
Indices: 26005921--26005976 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26005911 TCAAAGGAAA
26005921 ATAATAATAAATTAATTAAATCCCAAAT
1 ATAATAATAAATTAATTAAATCCCAAAT
26005949 ATAATAATAAATTAATTAAATCCCAAAT
1 ATAATAATAAATTAATTAAATCCCAAAT
26005977 TTTGATTGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATAATAAATTAATTAAATCCCAAAT
Found at i:26006805 original size:84 final size:83
Alignment explanation
Indices: 26006665--26006831 Score: 325
Period size: 84 Copynumber: 2.0 Consensus size: 83
26006655 TAATATTGAG
26006665 ATTTCTTTCTTCATTTTTTTTTGTTCTATGTTTGGTTGTCAAGAAACTAAGGAAAAGATAGAACT
1 ATTTCTTTCTTCATTTTTTTTTGTTCTATGTTTGGTTGTCAAGAAACTAAGGAAAAGATAGAACT
26006730 TAGATCTTAAATTAAATT
66 TAGATCTTAAATTAAATT
26006748 ATTTCTTTCTTCATTTTTTTTTTGTTCTATGTTTGGTTGTCAAGAAACTAAGGAAAAGATAGAAC
1 ATTTCTTTCTTCA-TTTTTTTTTGTTCTATGTTTGGTTGTCAAGAAACTAAGGAAAAGATAGAAC
26006813 TTAGATCTTAAATTAAATT
65 TTAGATCTTAAATTAAATT
26006832 TTATTTTAGT
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 13 0.16
84 70 0.84
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (83 bp):
ATTTCTTTCTTCATTTTTTTTTGTTCTATGTTTGGTTGTCAAGAAACTAAGGAAAAGATAGAACT
TAGATCTTAAATTAAATT
Found at i:26007361 original size:75 final size:75
Alignment explanation
Indices: 26007268--26007420 Score: 297
Period size: 75 Copynumber: 2.0 Consensus size: 75
26007258 AACTCTTTTG
26007268 GTTAAATGGATAGATAATTGTGATTTCATCATTGAGTCTTAGATTCAATTCCTCTTATTATAAGC
1 GTTAAATGGATAGATAATTGTGATTTCATCATTGAGTCTTAGATTCAATTCCTCTTATTATAAGC
26007333 ATTAATATGT
66 ATTAATATGT
*
26007343 GTTAGATGGATAGATAATTGTGATTTCATCATTGAGTCTTAGATTCAATTCCTCTTATTATAAGC
1 GTTAAATGGATAGATAATTGTGATTTCATCATTGAGTCTTAGATTCAATTCCTCTTATTATAAGC
26007408 ATTAATATGT
66 ATTAATATGT
26007418 GTT
1 GTT
26007421 TTTTGTTTCA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (75 bp):
GTTAAATGGATAGATAATTGTGATTTCATCATTGAGTCTTAGATTCAATTCCTCTTATTATAAGC
ATTAATATGT
Found at i:26007578 original size:19 final size:18
Alignment explanation
Indices: 26007554--26007590 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
26007544 AATAATTATT
*
26007554 GTAAATATCATTATTTTTA
1 GTAAATATAATT-TTTTTA
26007573 GTAAATATAATTTTTTTA
1 GTAAATATAATTTTTTTA
26007591 TGTGTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (18 bp):
GTAAATATAATTTTTTTA
Found at i:26014820 original size:15 final size:15
Alignment explanation
Indices: 26014797--26014826 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26014787 AATTATTTTG
*
26014797 AATATTATAAAATTT
1 AATAGTATAAAATTT
26014812 AATAGTATAAAATTT
1 AATAGTATAAAATTT
26014827 TAGTTTTTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
AATAGTATAAAATTT
Found at i:26016001 original size:22 final size:22
Alignment explanation
Indices: 26015976--26016042 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
26015966 AAATAAAAAA
*
26015976 TTTGTTATTATTTTATTATTAT
1 TTTGATATTATTTTATTATTAT
* * *
26015998 TTTGATATCATTTCACTATTAT
1 TTTGATATTATTTTATTATTAT
* * *
26016020 ATTGCTATTATTTTATTGTTAT
1 TTTGATATTATTTTATTATTAT
26016042 T
1 T
26016043 ATTTAGATAT
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (22 bp):
TTTGATATTATTTTATTATTAT
Found at i:26020904 original size:16 final size:16
Alignment explanation
Indices: 26020883--26020916 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
26020873 TTTATAATTT
26020883 TTTTAT-ATTTTTATAA
1 TTTTATGATTTTTA-AA
26020899 TTTTATGATTTTTAAA
1 TTTTATGATTTTTAAA
26020915 TT
1 TT
26020917 CTAAATTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTTATGATTTTTAAA
Found at i:26020985 original size:17 final size:16
Alignment explanation
Indices: 26020941--26020996 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
26020931 TAATTTGTTA
* *
26020941 CTAATTTCTAAAATTT
1 CTAATTTCAAAAAATT
* *
26020957 CTAAAATTAAAAAAATT
1 CT-AATTTCAAAAAATT
*
26020974 TTAATTTCAAAAAATT
1 CTAATTTCAAAAAATT
26020990 CTAATTT
1 CTAATTT
26020997 GCTTTCAATT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
16 20 0.65
17 11 0.35
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (16 bp):
CTAATTTCAAAAAATT
Found at i:26023776 original size:15 final size:15
Alignment explanation
Indices: 26023756--26023788 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
26023746 CAAACAACAA
26023756 TCTCTTCTCTGTCTT
1 TCTCTTCTCTGTCTT
26023771 TCTCTTCTCTGTCTT
1 TCTCTTCTCTGTCTT
26023786 TCT
1 TCT
26023789 TAGCTCACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.33, G:0.06, T:0.61
Consensus pattern (15 bp):
TCTCTTCTCTGTCTT
Found at i:26025757 original size:33 final size:33
Alignment explanation
Indices: 26025718--26025786 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
26025708 TTATTTTTTG
26025718 TTTGATTTTCATTAAAACGCCATAAATCTCTGT
1 TTTGATTTTCATTAAAACGCCATAAATCTCTGT
* *
26025751 TTTGATTTTCATTAAAGCGCGATAAATCTCTGT
1 TTTGATTTTCATTAAAACGCCATAAATCTCTGT
26025784 TTT
1 TTT
26025787 ATATTGAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.45
Consensus pattern (33 bp):
TTTGATTTTCATTAAAACGCCATAAATCTCTGT
Found at i:26026501 original size:25 final size:26
Alignment explanation
Indices: 26026451--26026502 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26026441 TTATATTAAT
* *
26026451 TTTTTATATAAAATATTATTATTTTA
1 TTTTTATATAAAATATTATAAATTTA
26026477 TTTTTAT-TAAAAATATT-TAAATTTA
1 TTTTTATAT-AAAATATTATAAATTTA
26026502 T
1 T
26026503 ATACATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTTTATATAAAATATTATAAATTTA
Found at i:26027214 original size:27 final size:27
Alignment explanation
Indices: 26027167--26027224 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
26027157 TCTATCTAAC
* **
26027167 AGGCTCAACTAGTCGTGCCTA-TCAGAT
1 AGGCTCAACCAGTCGCCCCTACT-AGAT
26027194 AGGCTCAACCAGTCGCCCCTACTAGAT
1 AGGCTCAACCAGTCGCCCCTACTAGAT
26027221 AGGC
1 AGGC
26027225 GCCACCTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (27 bp):
AGGCTCAACCAGTCGCCCCTACTAGAT
Found at i:26028726 original size:23 final size:22
Alignment explanation
Indices: 26028674--26028726 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
26028664 TCCACGTCTT
*
26028674 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
26028696 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
26028719 TTTCTTTT
1 TTTCTTTT
26028727 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:26033571 original size:36 final size:36
Alignment explanation
Indices: 26033513--26033584 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
26033503 GAAGTTCAAG
* * * *
26033513 GAAGCTGTCACGTGTATCATTGATCGAGTTTGGGCA
1 GAAGCTGTCACGAGTATAATTGATCAAGCTTGGGCA
26033549 GAAGCTGTCACGAG-ACTAATTGATCAAGCTTGGGCA
1 GAAGCTGTCACGAGTA-TAATTGATCAAGCTTGGGCA
26033585 TACACTCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 1 0.03
36 30 0.97
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (36 bp):
GAAGCTGTCACGAGTATAATTGATCAAGCTTGGGCA
Found at i:26033744 original size:38 final size:40
Alignment explanation
Indices: 26033692--26033769 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
26033682 TATTTTAGTT
26033692 TGTGTATTTAATTA-TGTCTT-AGTTTGAACATCATTAATA
1 TGTGTATTTAATTAGTGTCTTAAGTTTGAA-ATCATTAATA
*
26033731 TGTGT-TTTAATTATGTGTCTTAATTTTGAAATCATTAAT
1 TGTGTATTTAATTA-GTGTCTTAAGTTTGAAATCATTAAT
26033770 GTTTTTCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
38 8 0.23
39 5 0.14
40 15 0.43
41 7 0.20
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.51
Consensus pattern (40 bp):
TGTGTATTTAATTAGTGTCTTAAGTTTGAAATCATTAATA
Found at i:26037170 original size:12 final size:12
Alignment explanation
Indices: 26037149--26037184 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
26037139 AATGAGAAAG
26037149 AACA-AAAAGAA
1 AACAGAAAAGAA
26037160 AACAGAAAAGAA
1 AACAGAAAAGAA
*
26037172 AAAAGAAAAGAA
1 AACAGAAAAGAA
26037184 A
1 A
26037185 GAGGTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.81, C:0.06, G:0.14, T:0.00
Consensus pattern (12 bp):
AACAGAAAAGAA
Found at i:26040358 original size:25 final size:23
Alignment explanation
Indices: 26040314--26040361 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
26040304 GTAAAGTTTT
26040314 ATTTTTTTAAATACTTAGTTTAA
1 ATTTTTTTAAATACTTAGTTTAA
26040337 ATTTTTATGTAAATA-TTCAGTTTAA
1 ATTTTT-T-TAAATACTT-AGTTTAA
26040362 GAGGCCCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.27
24 3 0.14
25 13 0.59
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.54
Consensus pattern (23 bp):
ATTTTTTTAAATACTTAGTTTAA
Found at i:26063267 original size:80 final size:81
Alignment explanation
Indices: 26063153--26063376 Score: 292
Period size: 80 Copynumber: 2.8 Consensus size: 81
26063143 ATCCTAAAAA
* * * *
26063153 GGTAAAATGA-TCGAATTACCCCCGAAGGGTAAAATGACCAAATTACACTCGAATGGTAAAATGA
1 GGTAAAATGACT-GAATTACCCCTGAAGGGTAAAATGACCAAATTACACCCAAAGGGTAAAATGA
26063217 TCGAA-TACCCCCGAAG
65 TCGAATTACCCCCGAAG
* * ** *
26063233 GGTAAAATGACTGAATTACCCCTGAAGTGAAAAATGACTGAATTACCCCCAAAGGGTAAAATGAT
1 GGTAAAATGACTGAATTACCCCTGAAGGGTAAAATGACCAAATTACACCCAAAGGGTAAAATGAT
**
26063298 CGAATTACCCTTGAAG
66 CGAATTACCCCCGAAG
* * *
26063314 GGTAAAATGACTGAATTACCCCTGAAGGGTAAAATGACCAAAATAC-CCCATAGGGAAAAATGA
1 GGTAAAATGACTGAATTACCCCTGAAGGGTAAAATGACCAAATTACACCCAAAGGGTAAAATGA
26063377 CTGTTATACC
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 73 0.59
81 51 0.41
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (81 bp):
GGTAAAATGACTGAATTACCCCTGAAGGGTAAAATGACCAAATTACACCCAAAGGGTAAAATGAT
CGAATTACCCCCGAAG
Found at i:26063318 original size:107 final size:108
Alignment explanation
Indices: 26063156--26063351 Score: 290
Period size: 107 Copynumber: 1.8 Consensus size: 108
26063146 CTAAAAAGGT
* *
26063156 AAAATGATCGAATTACCCCCGAAGGGTAAAATGACCAAATTACACTCGAATGGTAAAATGA-TCG
1 AAAATGATCGAATTACCCCCAAAGGGTAAAATGACCAAATTACACTCGAAGGGTAAAATGACT-G
26063220 AA-TACCCCCGAAGGGTAAAATGACTGAATTACCCCTGAAGTGA
65 AATTACCCCCGAAGGGTAAAATGACTGAATTACCCCTGAAGTGA
* * * *
26063263 AAAATGA-CTGAATTACCCCCAAAGGGTAAAATGATCGAATTACCCTTGAAGGGTAAAATGACTG
1 AAAATGATC-GAATTACCCCCAAAGGGTAAAATGACCAAATTACACTCGAAGGGTAAAATGACTG
*
26063327 AATTACCCCTGAAGGGTAAAATGAC
65 AATTACCCCCGAAGGGTAAAATGAC
26063352 CAAAATACCC
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
106 1 0.01
107 56 0.71
108 22 0.28
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (108 bp):
AAAATGATCGAATTACCCCCAAAGGGTAAAATGACCAAATTACACTCGAAGGGTAAAATGACTGA
ATTACCCCCGAAGGGTAAAATGACTGAATTACCCCTGAAGTGA
Found at i:26063360 original size:27 final size:27
Alignment explanation
Indices: 26063153--26063362 Score: 235
Period size: 27 Copynumber: 7.8 Consensus size: 27
26063143 ATCCTAAAAA
* *
26063153 GGTAAAATGATCGAATTACCCCCGAAG
1 GGTAAAATGACCGAATTACCCCTGAAG
* * *
26063180 GGTAAAATGACCAAATTA-CACTCGAAT
1 GGTAAAATGACCGAATTACCCCT-GAAG
* *
26063207 GGTAAAATGATCGAA-TACCCCCGAAG
1 GGTAAAATGACCGAATTACCCCTGAAG
*
26063233 GGTAAAATGACTGAATTACCCCTGAAG
1 GGTAAAATGACCGAATTACCCCTGAAG
* * * **
26063260 TGAAAAATGACTGAATTACCCCCAAAG
1 GGTAAAATGACCGAATTACCCCTGAAG
* *
26063287 GGTAAAATGATCGAATTACCCTTGAAG
1 GGTAAAATGACCGAATTACCCCTGAAG
*
26063314 GGTAAAATGACTGAATTACCCCTGAAG
1 GGTAAAATGACCGAATTACCCCTGAAG
* *
26063341 GGTAAAATGACCAAAATACCCC
1 GGTAAAATGACCGAATTACCCC
26063363 ATAGGGAAAA
Statistics
Matches: 150, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 20 0.13
27 130 0.87
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAATTACCCCTGAAG
Found at i:26063361 original size:54 final size:54
Alignment explanation
Indices: 26063153--26063361 Score: 262
Period size: 54 Copynumber: 3.9 Consensus size: 54
26063143 ATCCTAAAAA
* * *
26063153 GGTAAAATGATCGAATTACCCCCGAAGGGTAAAATGACCAAATTACACTCGAAT
1 GGTAAAATGATCGAATTACCCCCGAAGGGTAAAATGACCAAATTACCCTTGAAG
** *
26063207 GGTAAAATGATCGAA-TACCCCCGAAGGGTAAAATGACTGAATTACCCCTGAAG
1 GGTAAAATGATCGAATTACCCCCGAAGGGTAAAATGACCAAATTACCCTTGAAG
* * * * *
26063260 TGAAAAATGA-CTGAATTACCCCCAAAGGGTAAAATGATCGAATTACCCTTGAAG
1 GGTAAAATGATC-GAATTACCCCCGAAGGGTAAAATGACCAAATTACCCTTGAAG
* *
26063314 GGTAAAATGA-CTGAATTACCCCTGAAGGGTAAAATGACCAAAATACCC
1 GGTAAAATGATC-GAATTACCCCCGAAGGGTAAAATGACCAAATTACCC
26063362 CATAGGGAAA
Statistics
Matches: 134, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
52 1 0.01
53 43 0.32
54 90 0.67
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (54 bp):
GGTAAAATGATCGAATTACCCCCGAAGGGTAAAATGACCAAATTACCCTTGAAG
Found at i:26063372 original size:107 final size:106
Alignment explanation
Indices: 26063156--26063379 Score: 283
Period size: 107 Copynumber: 2.1 Consensus size: 106
26063146 CTAAAAAGGT
* *
26063156 AAAATGA-TCGAATTACCCCCGAAGGGTAAAATGACCAAATTACACTCGAATGGTAAAATGATCG
1 AAAATGACT-GAATTACCCCCAAAGGGTAAAATGACCAAATTACACTCGAAGGGTAAAATGATCG
** * *
26063220 AATACCCCCGAAGGGTAAAATGACTGAATTACCCCTGAAGTGA
65 AATACCCCCGAAGGGTAAAATGACCAAAATACCCCT-AAGGGA
* * * *
26063263 AAAATGACTGAATTACCCCCAAAGGGTAAAATGATCGAATTACCCTTGAAGGGTAAAATGA-CTG
1 AAAATGACTGAATTACCCCCAAAGGGTAAAATGACCAAATTACACTCGAAGGGTAAAATGATC-G
*
26063327 AATTACCCCTGAAGGGTAAAATGACCAAAATACCCC-ATAGGGA
65 AA-TACCCCCGAAGGGTAAAATGACCAAAATACCCCTA-AGGGA
26063370 AAAATGACTG
1 AAAATGACTG
26063380 TTATACCCCT
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
106 2 0.02
107 70 0.69
108 30 0.29
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (106 bp):
AAAATGACTGAATTACCCCCAAAGGGTAAAATGACCAAATTACACTCGAAGGGTAAAATGATCGA
ATACCCCCGAAGGGTAAAATGACCAAAATACCCCTAAGGGA
Found at i:26063582 original size:26 final size:26
Alignment explanation
Indices: 26063552--26063653 Score: 123
Period size: 26 Copynumber: 3.9 Consensus size: 26
26063542 TTGCCATATA
**
26063552 TACTATTACTGGCAATTTTGCTGCAT
1 TACTATTACTGGCAGCTTTGCTGCAT
* *
26063578 TACTAATACTGACAGCTTTGCTGCAT
1 TACTATTACTGGCAGCTTTGCTGCAT
* * *
26063604 TACTTTTACTGGTAGCTTTACTGCAT
1 TACTATTACTGGCAGCTTTGCTGCAT
* *
26063630 TATTATTACTGGGAGCTTTGCTGC
1 TACTATTACTGGCAGCTTTGCTGC
26063654 GCTATTAGTG
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCTGCAT
Found at i:26063801 original size:28 final size:28
Alignment explanation
Indices: 26063764--26063988 Score: 288
Period size: 28 Copynumber: 8.0 Consensus size: 28
26063754 CATTGTACTA
* *
26063764 TTACTATATTGGGCTAAGGCCCATACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
**
26063792 TTACTGTATTGGGCTAAGGCTTACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
** * * *
26063820 TTACTACAATGGGCTAAGGCCCACATTA
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
26063848 TTACTATATTGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
26063876 TTACTGTATTGGGCTAAGGCTCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
* *
26063904 TTACCGTATCGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
* * * *
26063932 TTATTGTATCGGGCTAAGACCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
26063960 TTACTGTATCGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
26063988 T
1 T
26063989 ACTATTACTG
Statistics
Matches: 170, Mismatches: 27, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 170 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTG
Found at i:26063885 original size:84 final size:86
Alignment explanation
Indices: 26063760--26063992 Score: 323
Period size: 84 Copynumber: 2.8 Consensus size: 86
26063750 ACTGCATTGT
* *
26063760 ACTATTACTATATTGGGCTAAGGCCCATACTGTTACTGTATTGGGCTAAGGCTTACACTGTTACT
1 ACTATTACTATATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGGCTCACACTGTTACT
26063825 AC-AAT-GGGCTAAGGCCCAC
66 ACGAATCGGGCTAAGGCCCAC
*
26063844 ATTATTACTATATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGGCTCACACTGTTAC-
1 ACTATTACTATATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGGCTCACACTGTTACT
*
26063908 -CGTATCGGGCTAAGGCCCAC
66 ACGAATCGGGCTAAGGCCCAC
* * * * * * * *
26063928 ACTGTTATTGTATCGGGCTAAGACCCACACTATTACTGTATCGGGCTAAGGCCCACACTG-TACT
1 ACTATTACTATATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGGCTCACACTGTTACT
26063992 A
66 A
26063993 TTACTGCATA
Statistics
Matches: 132, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
82 1 0.01
83 5 0.04
84 126 0.95
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.29
Consensus pattern (86 bp):
ACTATTACTATATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGGCTCACACTGTTACT
ACGAATCGGGCTAAGGCCCAC
Found at i:26078852 original size:23 final size:23
Alignment explanation
Indices: 26078824--26078882 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
26078814 ATTTTATGCA
26078824 TACAAGTGATAGTGGCACTAT-G
1 TACAAGTGATAGTGGCACTATAG
* *
26078846 ATGCAAGTGTTAGTGGCACTATAG
1 -TACAAGTGATAGTGGCACTATAG
26078870 TACAAGTGATAGT
1 TACAAGTGATAGT
26078883 AGAACTTCGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 30 0.97
24 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (23 bp):
TACAAGTGATAGTGGCACTATAG
Found at i:26079466 original size:22 final size:22
Alignment explanation
Indices: 26079438--26079488 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
26079428 TTTAGTATTA
* *
26079438 AGTGTCATGATATCCGACTCTC
1 AGTGTCATGATATCCGACCCCC
*
26079460 AGTGTCATGATATTCGACCCCC
1 AGTGTCATGATATCCGACCCCC
26079482 AGTGTCA
1 AGTGTCA
26079489 CGACATTGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (22 bp):
AGTGTCATGATATCCGACCCCC
Found at i:26080403 original size:20 final size:21
Alignment explanation
Indices: 26080366--26080412 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
26080356 TTTTTCAACA
*
26080366 AAAAATAC-AAAATAATTT-T
1 AAAAATTCAAAAATAATTTAT
26080385 CAAAAATTCAAAAAT-ATTTAT
1 -AAAAATTCAAAAATAATTTAT
26080406 AAAAATT
1 AAAAATT
26080413 TTCAAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAAATTCAAAAATAATTTAT
Found at i:26081198 original size:16 final size:16
Alignment explanation
Indices: 26081177--26081209 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26081167 TTAAGTCAAC
26081177 TTTACTCTTGAAACGA
1 TTTACTCTTGAAACGA
*
26081193 TTTACTTTTGAAACGA
1 TTTACTCTTGAAACGA
26081209 T
1 T
26081210 AAGGATTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (16 bp):
TTTACTCTTGAAACGA
Found at i:26089423 original size:8 final size:8
Alignment explanation
Indices: 26089397--26089433 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
26089387 ATGTATACAC
26089397 ATTTTAAT
1 ATTTTAAT
*
26089405 A-TTTGAT
1 ATTTTAAT
26089412 -TTTTAAT
1 ATTTTAAT
26089419 ATTTTAAT
1 ATTTTAAT
26089427 ATTTTAA
1 ATTTTAA
26089434 AATTAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
7 10 0.40
8 15 0.60
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (8 bp):
ATTTTAAT
Found at i:26096963 original size:30 final size:30
Alignment explanation
Indices: 26096927--26097031 Score: 165
Period size: 30 Copynumber: 3.5 Consensus size: 30
26096917 TCCTAAAGCA
* * *
26096927 GCACACGGCCATGTGAACCACCTGTGTGCG
1 GCACACGCCCGTGTGAACCACCCGTGTGCG
26096957 GCACACGCCCGTGTGAACCACCCGTGTGCG
1 GCACACGCCCGTGTGAACCACCCGTGTGCG
*
26096987 GCACATGCCCGTGTGAACCACCCGTGTGCG
1 GCACACGCCCGTGTGAACCACCCGTGTGCG
*
26097017 GTACACGCCCGTGTG
1 GCACACGCCCGTGTG
26097032 GTTCATAAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 69 1.00
ACGTcount: A:0.17, C:0.36, G:0.30, T:0.16
Consensus pattern (30 bp):
GCACACGCCCGTGTGAACCACCCGTGTGCG
Found at i:26099786 original size:41 final size:41
Alignment explanation
Indices: 26099722--26099997 Score: 308
Period size: 41 Copynumber: 6.7 Consensus size: 41
26099712 TTTTAAACCT
* *
26099722 TTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTC-GTATCA
1 TTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCTGT-TCA
* * * *
26099763 TTAGTGGCGTTTTTATCTGAGCGCCACTAATTCTCTGTTCT
1 TTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCTGTTCA
* *
26099804 TTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTC-GTATCA
1 TTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCTGT-TCA
* * * *
26099845 TTAGTGGCGTTTTTATCTGAGCGCCACTAATTCTCTGTTCT
1 TTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCTGTTCA
*
26099886 TTAGCGGCGTTTTTGTCTAAGCGCCACTAATGCTC-GTATCA
1 TTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCTGT-TCA
* * * * *
26099927 TTAGTGGCGTTTTTATCTGAGCACCACTAATTCTCTGTTCT
1 TTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCTGTTCA
* *
26099968 TTAGCGGCATTTTT-TGCTAAGCGCCGCTAA
1 TTAGCGGCGTTTTTAT-CTAAGCGCCACTAA
26099998 AGTTCGTGTT
Statistics
Matches: 195, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
40 5 0.03
41 184 0.94
42 6 0.03
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (41 bp):
TTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCTGTTCA
Found at i:26099857 original size:82 final size:82
Alignment explanation
Indices: 26099720--26099997 Score: 513
Period size: 82 Copynumber: 3.4 Consensus size: 82
26099710 TTTTTTAAAC
26099720 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAGC
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAGC
26099785 GCCACTAATTCTCTGTT
66 GCCACTAATTCTCTGTT
26099802 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAGC
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAGC
26099867 GCCACTAATTCTCTGTT
66 GCCACTAATTCTCTGTT
*
26099884 CTTTAGCGGCGTTTTTGTCTAAGCGCCACTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAGC
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAGC
*
26099949 ACCACTAATTCTCTGTT
66 GCCACTAATTCTCTGTT
*
26099966 CTTTAGCGGCATTTTT-TGCTAAGCGCCGCTAA
1 CTTTAGCGGCGTTTTTGT-CTAAGCGCCGCTAA
26099998 AGTTCGTGTT
Statistics
Matches: 191, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
81 1 0.01
82 190 0.99
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (82 bp):
CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAGC
GCCACTAATTCTCTGTT
Found at i:26100254 original size:81 final size:81
Alignment explanation
Indices: 26100137--26100555 Score: 802
Period size: 81 Copynumber: 5.2 Consensus size: 81
26100127 GTGTACTCTA
* *
26100137 TTAGTGGCGTTTTAAGGGAAAACGCCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTC
1 TTAGTGGCGTTTTAA-GGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTC
26100202 TTTCTGTAATTGAAAAT
65 TTTCTGTAATTGAAAAT
26100219 TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
1 TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
26100284 TTCTGTAATTGAAAAT
66 TTCTGTAATTGAAAAT
26100300 TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
1 TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
26100365 TTCTGTAATTGAAAAT
66 TTCTGTAATTGAAAAT
26100381 TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
1 TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
26100446 TTCTGTAATTGAAAAT
66 TTCTGTAATTGAAAAT
26100462 TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
1 TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
*
26100527 TTCTGTAATTGAAAAG
66 TTCTGTAATTGAAAAT
26100543 TTAGTGGCGTTTT
1 TTAGTGGCGTTTT
26100556 TTCCGGTAGC
Statistics
Matches: 334, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
81 319 0.96
82 15 0.04
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (81 bp):
TTAGTGGCGTTTTAAGGTAAACGTCGCAAATATGTCTACAATTTTGTGAAAACGTCACCGTTTCT
TTCTGTAATTGAAAAT
Found at i:26101477 original size:8 final size:10
Alignment explanation
Indices: 26101455--26101491 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
26101445 TATTTTTACT
26101455 TATATATGGA
1 TATATATGGA
*
26101465 TATATATGAA
1 TATATATGGA
26101475 TATATATGGA
1 TATATATGGA
26101485 TATATAT
1 TATATAT
26101492 ATAGTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (10 bp):
TATATATGGA
Found at i:26101600 original size:27 final size:27
Alignment explanation
Indices: 26101559--26101610 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
26101549 AATAAACAAA
* *
26101559 TAAATAAGTTAGTAATTATTTATTTGT
1 TAAATAAATTAGTAATTAATTATTTGT
*
26101586 TAAATAAATTGGTAATTAATTATTT
1 TAAATAAATTAGTAATTAATTATTT
26101611 AAAAGTAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (27 bp):
TAAATAAATTAGTAATTAATTATTTGT
Found at i:26104122 original size:29 final size:29
Alignment explanation
Indices: 26104081--26104151 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
26104071 TACTTCAAAT
*
26104081 TAATGAATAATTATCGATTTTAACTTACA
1 TAATGAATAATTATCGATCTTAACTTACA
*
26104110 TAATGACTAATTATCGATCTTAACTTACA
1 TAATGAATAATTATCGATCTTAACTTACA
26104139 TAATGAATAATTA
1 TAATGAATAATTA
26104152 AAATTATATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.39
Consensus pattern (29 bp):
TAATGAATAATTATCGATCTTAACTTACA
Found at i:26104417 original size:9 final size:9
Alignment explanation
Indices: 26104399--26104533 Score: 91
Period size: 9 Copynumber: 15.2 Consensus size: 9
26104389 CTTATATTTA
*
26104399 AACTTTCAT
1 AACTTACAT
26104408 AACTTACAT
1 AACTTACAT
*
26104417 AA-TAACAT
1 AACTTACAT
26104425 ATGGACTTACAT
1 A---ACTTACAT
*
26104437 TA--TACAT
1 AACTTACAT
* *
26104444 ACCATACAT
1 AACTTACAT
26104453 AACTTACAT
1 AACTTACAT
*
26104462 AA--TACAA
1 AACTTACAT
26104469 AACTTACAT
1 AACTTACAT
*
26104478 AACTTAAAT
1 AACTTACAT
* *
26104487 ATCTTACAC
1 AACTTACAT
*
26104496 AACTTACAC
1 AACTTACAT
*
26104505 AACTTAAAT
1 AACTTACAT
* *
26104514 AATTTAAAT
1 AACTTACAT
26104523 AACTTACAT
1 AACTTACAT
26104532 AA
1 AA
26104534 TACATAATAT
Statistics
Matches: 98, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
7 11 0.11
8 6 0.06
9 75 0.77
11 1 0.01
12 5 0.05
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:26104459 original size:25 final size:25
Alignment explanation
Indices: 26104429--26104483 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
26104419 TAACATATGG
* * *
26104429 ACTTACATTATACATACCATACATA
1 ACTTACATAATACAAAACATACATA
*
26104454 ACTTACATAATACAAAACTTACATA
1 ACTTACATAATACAAAACATACATA
26104479 ACTTA
1 ACTTA
26104484 AATATCTTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (25 bp):
ACTTACATAATACAAAACATACATA
Found at i:26104560 original size:9 final size:9
Alignment explanation
Indices: 26104448--26104901 Score: 72
Period size: 9 Copynumber: 50.4 Consensus size: 9
26104438 ATACATACCA
*
26104448 TACATAACT
1 TACATAAAT
26104457 TACAT-AA-
1 TACATAAAT
26104464 TACA-AAACT
1 TACATAAA-T
*
26104473 TACATAACT
1 TACATAAAT
* **
26104482 TAAATATCT
1 TACATAAAT
* *
26104491 TACACAACT
1 TACATAAAT
* *
26104500 TACACAACT
1 TACATAAAT
* *
26104509 TAAATAATT
1 TACATAAAT
* *
26104518 TAAATAACT
1 TACATAAAT
26104527 TACAT-AA-
1 TACATAAAT
26104534 TACATAATAT
1 TACATAA-AT
26104544 GATACATAAAT
1 --TACATAAAT
26104555 TACATAAATAT
1 TACAT-AA-AT
26104566 GATACATAAAT
1 --TACATAAAT
*
26104577 TACATAACT
1 TACATAAAT
*
26104586 TA-ATTAAT
1 TACATAAAT
26104594 TA-AT--A-
1 TACATAAAT
*
26104599 TACATAAGT
1 TACATAAAT
26104608 TACATAACTTAGT
1 TACATAA---A-T
*
26104621 TA-ATTAAT
1 TACATAAAT
*
26104629 ATACATAAGT
1 -TACATAAAT
*
26104639 TACATAACT
1 TACATAAAT
26104648 T--A-AAAT
1 TACATAAAT
*
26104654 TA-ATTAAT
1 TACATAAAT
*
26104662 ATACATAAGT
1 -TACATAAAT
*
26104672 TACATTAAT
1 TACATAAAT
*
26104681 TA-ATTAAT
1 TACATAAAT
26104689 ATACATAAAT
1 -TACATAAAT
26104699 TACATTAATAT
1 TACA-TAA-AT
*
26104710 GACACATAAAT
1 --TACATAAAT
*
26104721 TACATAACT
1 TACATAAAT
*
26104730 TA-ATTAAT
1 TACATAAAT
26104738 TA-AT--A-
1 TACATAAAT
*
26104743 TACATAAGT
1 TACATAAAT
26104752 TACATAACTTAGT
1 TACATAA---A-T
*
26104765 TA-ATTAAT
1 TACATAAAT
*
26104773 ATACATAAGT
1 -TACATAAAT
*
26104783 TACATAACT
1 TACATAAAT
*
26104792 TA-ATTAAT
1 TACATAAAT
*
26104800 T--A-ACA-
1 TACATAAAT
26104805 TACATAAAT
1 TACATAAAT
26104814 TACATTAATATT
1 TACA-TAA-A-T
26104826 ATACATAAAT
1 -TACATAAAT
*
26104836 TACATAACT
1 TACATAAAT
*
26104845 TA-ATTAAT
1 TACATAAAT
26104853 TA-AT--A-
1 TACATAAAT
*
26104858 TACATAAGT
1 TACATAAAT
*
26104867 TACATAACT
1 TACATAAAT
26104876 TACATTAATAT
1 TACA-TAA-AT
26104887 GATACATAAAT
1 --TACATAAAT
26104898 TACA
1 TACA
26104902 AAAAATTGCA
Statistics
Matches: 335, Mismatches: 51, Indels: 118
0.66 0.10 0.23
Matches are distributed among these distances:
5 7 0.02
6 14 0.04
7 15 0.04
8 45 0.13
9 161 0.48
10 31 0.09
11 15 0.04
12 25 0.07
13 22 0.07
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.36
Consensus pattern (9 bp):
TACATAAAT
Found at i:26104576 original size:13 final size:12
Alignment explanation
Indices: 26104533--26104574 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
26104523 AACTTACATA
26104533 ATACATAATATG
1 ATACATAATATG
26104545 ATACATAA-AT-
1 ATACATAATATG
26104555 -TACATAAATATG
1 ATACAT-AATATG
26104567 ATACATAA
1 ATACATAA
26104575 ATTACATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
9 5 0.19
10 2 0.08
11 4 0.15
12 10 0.38
13 5 0.19
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.31
Consensus pattern (12 bp):
ATACATAATATG
Found at i:26104602 original size:31 final size:31
Alignment explanation
Indices: 26104567--26105088 Score: 436
Period size: 31 Copynumber: 17.0 Consensus size: 31
26104557 CATAAATATG
26104567 ATACATAAATTACATAACTTAATTAATTAAT
1 ATACATAAATTACATAACTTAATTAATTAAT
* *
26104598 ATACATAAGTTACATAACTTAGTTAATTAAT
1 ATACATAAATTACATAACTTAATTAATTAAT
*
26104629 ATACATAAGTTACATAACTTAAAATTAATTAAT
1 ATACATAAATTACATAACTT--AATTAATTAAT
*
26104662 ATACATAAGTTAC---A-TTAATTAATTAAT
1 ATACATAAATTACATAACTTAATTAATTAAT
*
26104689 ATACATAAATTAC---A-TTAA-T-A-T--G
1 ATACATAAATTACATAACTTAATTAATTAAT
*
26104711 ACACATAAATTACATAACTTAATTAATTAAT
1 ATACATAAATTACATAACTTAATTAATTAAT
* *
26104742 ATACATAAGTTACATAACTTAGTTAATTAAT
1 ATACATAAATTACATAACTTAATTAATTAAT
* *
26104773 ATACATAAGTTACATAACTTAATTAATTAAC
1 ATACATAAATTACATAACTTAATTAATTAAT
26104804 ATACATAAATTAC---A-TTAA-T-A-T--T
1 ATACATAAATTACATAACTTAATTAATTAAT
26104826 ATACATAAATTACATAACTTAATTAATTAAT
1 ATACATAAATTACATAACTTAATTAATTAAT
*
26104857 ATACATAAGTTACATAACTTACATTAA-T-AT
1 ATACATAAATTACATAACTTA-ATTAATTAAT
* * *
26104887 GATACATAAATTACAAAAAATTGCAATTAA-TATT
1 -ATACATAAATTAC-ATAACTT--AATTAATTAAT
26104921 ATACATATAACTTAC--AACTTACA-TAACTTACA-
1 ATACATA-AA-TTACATAACTTA-ATTAA-TTA-AT
* * **
26104953 ACTTAAATAACTTACATAACTTACATTTTTTTAATT
1 A--TACATAAATTACATAACTTA-A-TTAATTAA-T
* *
26104989 ATTCATAAATTACATAACTTAATTAGTTAAT
1 ATACATAAATTACATAACTTAATTAATTAAT
26105020 ATACATAAATTACATAACTTAATTAATTACTCAGTATT
1 ATACATAAATTACATAACTTAATTAA-T--T-A--A-T
*
26105058 ATACATAAATTACATAACTTAGTTAATTAAT
1 ATACATAAATTACATAACTTAATTAATTAAT
26105089 GTTATACATA
Statistics
Matches: 411, Mismatches: 33, Indels: 94
0.76 0.06 0.17
Matches are distributed among these distances:
22 25 0.06
24 2 0.00
25 4 0.01
26 10 0.02
27 34 0.08
28 3 0.01
29 4 0.01
30 7 0.02
31 179 0.44
32 29 0.07
33 38 0.09
34 37 0.09
35 9 0.02
36 2 0.00
37 2 0.00
38 26 0.06
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (31 bp):
ATACATAAATTACATAACTTAATTAATTAAT
Found at i:26104700 original size:144 final size:137
Alignment explanation
Indices: 26104517--26104842 Score: 505
Period size: 144 Copynumber: 2.4 Consensus size: 137
26104507 CTTAAATAAT
* * * *
26104517 TTAAATAACTTACAT-AA-TACA-TAATATGATACATAAATTACATAAATATGATACATAAATTA
1 TTAATTAACATACATAAATTACATTAATATTATACATAAATTACATAAATATGACACATAAATTA
26104579 CATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAATATACATAAGTTACAT
66 CATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAATATACATAAGTTACAT
26104644 AACTTAAAA
131 AACTT--AA
* * *
26104653 TTAATTAATATACATAAGTTACATTAATTAATTAATATACATAAATTACATTAATATGACACATA
1 TTAATTAACATACATAAATTACATTAA-T-A-T--TATACATAAATTACATAAATATGACACATA
26104718 AATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAATATACATAAGT
61 AATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAATATACATAAGT
26104783 TACATAACTTAA
126 TACATAACTTAA
26104795 TTAATTAACATACATAAATTACATTAATATTATACATAAATTACATAA
1 TTAATTAACATACATAAATTACATTAATATTATACATAAATTACATAA
26104843 CTTAATTAAT
Statistics
Matches: 172, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
136 12 0.07
137 18 0.10
138 4 0.02
139 4 0.02
140 2 0.01
141 2 0.01
142 28 0.16
144 102 0.59
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.37
Consensus pattern (137 bp):
TTAATTAACATACATAAATTACATTAATATTATACATAAATTACATAAATATGACACATAAATTA
CATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAATATACATAAGTTACAT
AACTTAA
Found at i:26104811 original size:53 final size:53
Alignment explanation
Indices: 26104764--26104871 Score: 171
Period size: 53 Copynumber: 2.0 Consensus size: 53
26104754 CATAACTTAG
*
26104764 TTAATTAATATACATAAGTTACATAACTTAATTAATTAACATACATAAATTACA
1 TTAA-TAATATACATAAATTACATAACTTAATTAATTAACATACATAAATTACA
* * *
26104818 TTAATATTATACATAAATTACATAACTTAATTAATTAATATACATAAGTTACA
1 TTAATAATATACATAAATTACATAACTTAATTAATTAACATACATAAATTACA
26104871 T
1 T
26104872 AACTTACATT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 46 0.92
54 4 0.08
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (53 bp):
TTAATAATATACATAAATTACATAACTTAATTAATTAACATACATAAATTACA
Done.