Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 86 of 144
Found at i:26104829 original size:22 final size:22
Alignment explanation
Indices: 26104804--26104901 Score: 75
Period size: 22 Copynumber: 4.6 Consensus size: 22
26104794 ATTAATTAAC
26104804 ATACATAAATTACATTAATATT
1 ATACATAAATTACATTAATATT
*
26104826 ATACATAAATTACA-T-A-ACT
1 ATACATAAATTACATTAATATT
* *
26104845 -TA-ATTAATTA-ATATACATAAGT
1 ATACATAAATTACAT-TA-AT-ATT
* *
26104867 -TACATAACTTACATTAATATG
1 ATACATAAATTACATTAATATT
26104888 ATACATAAATTACA
1 ATACATAAATTACA
26104902 AAAAATTGCA
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
16 1 0.02
17 7 0.12
18 3 0.05
19 2 0.03
20 2 0.03
21 2 0.03
22 32 0.54
23 8 0.14
24 2 0.03
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (22 bp):
ATACATAAATTACATTAATATT
Found at i:26104893 original size:53 final size:51
Alignment explanation
Indices: 26104782--26104895 Score: 124
Period size: 53 Copynumber: 2.2 Consensus size: 51
26104772 TATACATAAG
* * *
26104782 TTACATAACTTAATTAATTAACATACATAAATTACATTAATATTATACA-TAA-A
1 TTACATAACTTAATTAATTAATATACATAAGTTACA-TAA-CTTA-A-ATTAATA
*
26104835 TTACATAACTTAATTAATTAATATACATAAGTTACATAACTTACATTAATA
1 TTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAAATTAATA
26104886 TGATACATAA
1 T--TACATAA
26104896 ATTACAAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
49 1 0.02
50 3 0.06
51 5 0.09
52 3 0.06
53 41 0.77
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (51 bp):
TTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAAATTAATA
Found at i:26104948 original size:16 final size:16
Alignment explanation
Indices: 26104927--26104978 Score: 77
Period size: 16 Copynumber: 3.1 Consensus size: 16
26104917 TATTATACAT
26104927 ATAACTTACAACTTAC
1 ATAACTTACAACTTAC
*
26104943 ATAACTTACAACTTAA
1 ATAACTTACAACTTAC
26104959 ATAACTTACATAACTTAC
1 ATAACTTAC--AACTTAC
26104977 AT
1 AT
26104979 TTTTTTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 24 0.75
18 8 0.25
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAACTTACAACTTAC
Found at i:26104950 original size:9 final size:9
Alignment explanation
Indices: 26104927--26104978 Score: 67
Period size: 9 Copynumber: 6.2 Consensus size: 9
26104917 TATTATACAT
26104927 ATAACTTAC
1 ATAACTTAC
26104936 --AACTTAC
1 ATAACTTAC
26104943 ATAACTTAC
1 ATAACTTAC
*
26104952 --AACTTAA
1 ATAACTTAC
26104959 ATAACTTAC
1 ATAACTTAC
26104968 ATAACTTAC
1 ATAACTTAC
26104977 AT
1 AT
26104979 TTTTTTAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 13 0.35
9 24 0.65
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:26105002 original size:34 final size:34
Alignment explanation
Indices: 26104959--26105154 Score: 114
Period size: 34 Copynumber: 5.5 Consensus size: 34
26104949 TACAACTTAA
*
26104959 ATAACTTACATAACTTACATTTTTTTAATTATTC
1 ATAAATTACATAACTTACATTTTTTTAATTATTC
** *
26104993 ATAAATTACATAACTTA-A-TTAGTTAA-TATAC
1 ATAAATTACATAACTTACATTTTTTTAATTATTC
* * *
26105024 ATAAATTACATAACTTA-ATTAATTACTCAGTATTATAC
1 ATAAATTACATAACTTACATT--TT-TTTA--ATTATTC
* * *
26105062 ATAAATTACATAACTTAGTTAATTAATGTTATACATAACTT-
1 ATAAATTACATAACTTA---CATT--T-TTTTA-ATTA-TTC
* * *
26105103 ACAACTTACATAACTTACAATTTTTTAATTATTC
1 ATAAATTACATAACTTACATTTTTTTAATTATTC
*
26105137 GTAAATTACATAACTTAC
1 ATAAATTACATAACTTAC
26105155 TTAATTTTCA
Statistics
Matches: 126, Mismatches: 22, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
31 22 0.17
32 7 0.06
33 3 0.02
34 35 0.28
35 6 0.05
36 1 0.01
37 1 0.01
38 24 0.19
41 18 0.14
42 8 0.06
43 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.42
Consensus pattern (34 bp):
ATAAATTACATAACTTACATTTTTTTAATTATTC
Found at i:26105021 original size:163 final size:165
Alignment explanation
Indices: 26104823--26105122 Score: 423
Period size: 163 Copynumber: 1.8 Consensus size: 165
26104813 TTACATTAAT
*
26104823 ATTATACATAAATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTACATTAA-TA-
1 ATTATACATAAATTACATAACTTAATTAATTAATATACATAAATTACATAACTTA-ATTAATTAC
26104886 T-G-ATACATAAATTACAAAAAATT-G-CAATTAATATTATACATATAACTTACAACTTACATAA
65 TAGTATACATAAATTAC-AAAAATTAGTCAATTAATATTATAC--ATAACTTACAACTTACATAA
26104947 CTTACAACTTAAATAACTTACATAACTTACATTTTTTTA
127 CTTACAACTTAAATAACTTACATAACTTACATTTTTTTA
* *
26104986 ATTATTCATAAATTACATAACTTAATTAGTTAATATACATAAATTACATAACTTAATTAATTACT
1 ATTATACATAAATTACATAACTTAATTAATTAATATACATAAATTACATAACTTAATTAATTACT
* * * *
26105051 CAGTATTATACATAAATTACATAACTTAGTTAATTAATGTTATACATAACTTACAACTTACATAA
66 -AG---TATACATAAATTACAAAAATTAGTCAATTAATATTATACATAACTTACAACTTACATAA
26105116 CTTACAA
127 CTTACAA
26105123 TTTTTTAATT
Statistics
Matches: 120, Mismatches: 7, Indels: 14
0.85 0.05 0.10
Matches are distributed among these distances:
162 5 0.04
163 54 0.45
164 1 0.01
166 1 0.01
169 32 0.27
170 14 0.12
171 13 0.11
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.38
Consensus pattern (165 bp):
ATTATACATAAATTACATAACTTAATTAATTAATATACATAAATTACATAACTTAATTAATTACT
AGTATACATAAATTACAAAAATTAGTCAATTAATATTATACATAACTTACAACTTACATAACTTA
CAACTTAAATAACTTACATAACTTACATTTTTTTA
Found at i:26105176 original size:25 final size:25
Alignment explanation
Indices: 26105146--26105262 Score: 92
Period size: 25 Copynumber: 4.4 Consensus size: 25
26105136 CGTAAATTAC
*
26105146 ATAACTTACTTAATTTTCATAATAA
1 ATAACTTACATAATTTTCATAATAA
* * *
26105171 ATAACTTACATAACTTATACGA-CATAC
1 ATAACTTACATAA-TT-TTC-ATAATAA
* *
26105198 ATAACTTACATAGCATAATTTGACTAATAC
1 ATAACTTACATA--AT--TTTCA-TAATAA
*
26105228 ACAACTTACATAATTTTCATAATAA
1 ATAACTTACATAATTTTCATAATAA
26105253 ATAACTTACA
1 ATAACTTACA
26105263 AAATACATAG
Statistics
Matches: 72, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
25 26 0.36
26 6 0.08
27 17 0.24
28 5 0.07
29 2 0.03
30 16 0.22
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (25 bp):
ATAACTTACATAATTTTCATAATAA
Found at i:26105183 original size:9 final size:9
Alignment explanation
Indices: 26105142--26105209 Score: 50
Period size: 9 Copynumber: 7.8 Consensus size: 9
26105132 TATTCGTAAA
26105142 TTACATAAC
1 TTACATAAC
* *
26105151 TTACTTAAT
1 TTACATAAC
*
26105160 TTTCATAA-
1 TTACATAAC
*
26105168 -TAAATAAC
1 TTACATAAC
26105176 TTACATAAC
1 TTACATAAC
* **
26105185 TTATACGAC
1 TTACATAAC
*
26105194 ATACATAAC
1 TTACATAAC
26105203 TTACATA
1 TTACATA
26105210 GCATAATTTG
Statistics
Matches: 42, Mismatches: 15, Indels: 4
0.69 0.25 0.07
Matches are distributed among these distances:
7 5 0.12
9 37 0.88
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:26110807 original size:66 final size:65
Alignment explanation
Indices: 26110699--26110869 Score: 200
Period size: 66 Copynumber: 2.6 Consensus size: 65
26110689 GAGCAAATTA
* * * * *
26110699 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGATGTTCAAAG-AAGATATGAAGAACTCCA
1 CACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAG-TATGAAAAACTCCA
26110763 G
65 G
*
26110764 CTACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAAAACTCCA
1 C-ACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAGTATGAAAAACTCCA
26110829 G
65 G
* * * * * *
26110830 CAGCAGCTTAGAGCAGATGCGGCAGCAAGAGAAGCAGAGG
1 CA-CAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGG
26110870 CGGCAACGAG
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
65 2 0.02
66 86 0.95
67 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.28, T:0.13
Consensus pattern (65 bp):
CACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAGTATGAAAAACTCCAG
Found at i:26110910 original size:42 final size:42
Alignment explanation
Indices: 26110851--26110952 Score: 134
Period size: 42 Copynumber: 2.4 Consensus size: 42
26110841 AGCAGATGCG
* * *
26110851 GCAGCAAGAGAAGCAGAGGCGGCAA-CGAGAGAAGTACAGGCT
1 GCAGCGAGGGAAGCAGAGGC-GAAAGCGAGAGAAGTACAGGCT
* * *
26110893 GCAGCGAGGGAAGCAGAGGCTAAAGCGAGGGAAGTAGAGGCT
1 GCAGCGAGGGAAGCAGAGGCGAAAGCGAGAGAAGTACAGGCT
26110935 GCAGCGAGGGAAGCAGAG
1 GCAGCGAGGGAAGCAGAG
26110953 CAGCGTCAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.04
42 51 0.96
ACGTcount: A:0.35, C:0.17, G:0.43, T:0.05
Consensus pattern (42 bp):
GCAGCGAGGGAAGCAGAGGCGAAAGCGAGAGAAGTACAGGCT
Found at i:26110913 original size:21 final size:21
Alignment explanation
Indices: 26110841--26110952 Score: 116
Period size: 21 Copynumber: 5.3 Consensus size: 21
26110831 AGCAGCTTAG
* * * *
26110841 AGCAGATGCGGCAGCAAGAGA
1 AGCAGAGGCTGCAGCGAGGGA
* * *
26110862 AGCAGAGGCGGCAACGAGAGA
1 AGCAGAGGCTGCAGCGAGGGA
* *
26110883 AGTACAGGCTGCAGCGAGGGA
1 AGCAGAGGCTGCAGCGAGGGA
**
26110904 AGCAGAGGCTAAAGCGAGGGA
1 AGCAGAGGCTGCAGCGAGGGA
*
26110925 AGTAGAGGCTGCAGCGAGGGA
1 AGCAGAGGCTGCAGCGAGGGA
26110946 AGCAGAG
1 AGCAGAG
26110953 CAGCGTCAAA
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 75 1.00
ACGTcount: A:0.35, C:0.17, G:0.43, T:0.05
Consensus pattern (21 bp):
AGCAGAGGCTGCAGCGAGGGA
Found at i:26111133 original size:10 final size:9
Alignment explanation
Indices: 26111114--26111143 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
26111104 TAATACGAAT
26111114 TTTATTATA
1 TTTATTATA
26111123 TTTATTGATA
1 TTTATT-ATA
26111133 TTTATTATA
1 TTTATTATA
26111142 TT
1 TT
26111144 ATTTGTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (9 bp):
TTTATTATA
Found at i:26111483 original size:86 final size:86
Alignment explanation
Indices: 26111407--26111851 Score: 773
Period size: 86 Copynumber: 5.2 Consensus size: 86
26111397 CGTTTTTAGT
* * * * *
26111407 AAAAGCGCCGATAAAGACCCTGATCTATAGCGGCTCTTTGCGCAAAAACGCCACTAAAGACCCTG
1 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
* *
26111472 ATCTATAGCGGCACTTTTACC
66 ATCTATAACGGCGCTTTTACC
* * *
26111493 AAAAATGCCGCGAAAAACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
1 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
26111558 ATCTATAACGGCGCTTTTACC
66 ATCTATAACGGCGCTTTTACC
26111579 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
1 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
26111644 ATCTATAACGGCGCTTTTACC
66 ATCTATAACGGCGCTTTTACC
26111665 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
1 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
26111730 ATCTATAACGGCGCTTTTACC
66 ATCTATAACGGCGCTTTTACC
26111751 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
1 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
* *
26111816 ATCAATAGCGGCGCTTTTACC
66 ATCTATAACGGCGCTTTTACC
*
26111837 CAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
26111852 TGTATTAGTC
Statistics
Matches: 343, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 343 1.00
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTG
ATCTATAACGGCGCTTTTACC
Found at i:26111842 original size:43 final size:43
Alignment explanation
Indices: 26111418--26111851 Score: 544
Period size: 43 Copynumber: 10.1 Consensus size: 43
26111408 AAAGCGCCGA
* *
26111418 TAAAGACCCTGATCTATAGCGGCTCTTTGCGCAAAAACGCCAC
1 TAAAGACCCTGATCTATAGCGGCGCTTTACGCAAAAACGCCAC
* * *
26111461 TAAAGACCCTGATCTATAGCGGCACTTTTAC-CAAAAATGCCGC
1 TAAAGACCCTGATCTATAGCGGCGC-TTTACGCAAAAACGCCAC
* *
26111504 GAAAAACCCTGATCTATAGCGGCGC-TTAGCGCAAAAACGCCAC
1 TAAAGACCCTGATCTATAGCGGCGCTTTA-CGCAAAAACGCCAC
* * *
26111547 TAAAGACCTTGATCTATAACGGCGCTTTTAC-CAAAAACGCCGC
1 TAAAGACCCTGATCTATAGCGGCGC-TTTACGCAAAAACGCCAC
26111590 TAAAGACCCTGATCTATAGCGGCGC-TTAGCGCAAAAACGCCAC
1 TAAAGACCCTGATCTATAGCGGCGCTTTA-CGCAAAAACGCCAC
* * *
26111633 TAAAGACCTTGATCTATAACGGCGCTTTTAC-CAAAAACGCCGC
1 TAAAGACCCTGATCTATAGCGGCGC-TTTACGCAAAAACGCCAC
26111676 TAAAGACCCTGATCTATAGCGGCGC-TTAGCGCAAAAACGCCAC
1 TAAAGACCCTGATCTATAGCGGCGCTTTA-CGCAAAAACGCCAC
* * *
26111719 TAAAGACCTTGATCTATAACGGCGCTTTTAC-CAAAAACGCCGC
1 TAAAGACCCTGATCTATAGCGGCGC-TTTACGCAAAAACGCCAC
26111762 TAAAGACCCTGATCTATAGCGGCGC-TTAGCGCAAAAACGCCAC
1 TAAAGACCCTGATCTATAGCGGCGCTTTA-CGCAAAAACGCCAC
* * * *
26111805 TAAAGACCTTGATCAATAGCGGCGCTTTTAC-CCAAAACGCCGC
1 TAAAGACCCTGATCTATAGCGGCGC-TTTACGCAAAAACGCCAC
26111848 TAAA
1 TAAA
26111852 TGTATTAGTC
Statistics
Matches: 341, Mismatches: 33, Indels: 34
0.84 0.08 0.08
Matches are distributed among these distances:
41 12 0.04
42 4 0.01
43 305 0.89
44 8 0.02
45 12 0.04
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.20
Consensus pattern (43 bp):
TAAAGACCCTGATCTATAGCGGCGCTTTACGCAAAAACGCCAC
Found at i:26111869 original size:43 final size:42
Alignment explanation
Indices: 26111822--26111918 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
26111812 CTTGATCAAT
* *
26111822 AGCGGCGCTTTTACCCAAAACGCCGCTAAATG-TATTAGTCTTC
1 AGCGGCGCTTTTA-CCAAAACGCCGCGAAA-GCTACTAGTCTTC
* * * *
26111865 AGCGGCGCTTCTACTAAAGCGCCGCGAAAGCTCCTAGTCTTC
1 AGCGGCGCTTTTACCAAAACGCCGCGAAAGCTACTAGTCTTC
*
26111907 AGCGGCGTTTTT
1 AGCGGCGCTTTT
26111919 GATATAAGCG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
41 1 0.02
42 32 0.71
43 12 0.27
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (42 bp):
AGCGGCGCTTTTACCAAAACGCCGCGAAAGCTACTAGTCTTC
Found at i:26112954 original size:41 final size:40
Alignment explanation
Indices: 26112897--26113057 Score: 162
Period size: 41 Copynumber: 3.9 Consensus size: 40
26112887 TAAACAGATT
* * *
26112897 CACCGGCATTTTGCCTGCTAGGCTTAAAGCCTGATTCAGTA
1 CACCGGCATTTAGCCTGCTAGACTTAAAGTCTGATT-AGTA
* * * *
26112938 CACCGGCACTTAGCCTGCTAGACATATAGTCTGA-AATGTA
1 CACCGGCATTTAGCCTGCTAGACTTAAAGTCTGATTA-GTA
* *
26112978 TCACCGGCATTTAGCCTGCTAGACTTAAAGTCTGAATTACTT
1 -CACCGGCATTTAGCCTGCTAGACTTAAAGTCTG-ATTAGTA
* * *
26113020 CACCGGCATTAAGCCTGCTAGACGTAACGTCTGTATTA
1 CACCGGCATTTAGCCTGCTAGACTTAAAGTCTG-ATTA
26113058 TATTCAATCA
Statistics
Matches: 99, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 1 0.01
40 3 0.03
41 92 0.93
42 2 0.02
43 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (40 bp):
CACCGGCATTTAGCCTGCTAGACTTAAAGTCTGATTAGTA
Found at i:26115555 original size:227 final size:227
Alignment explanation
Indices: 26115160--26115608 Score: 853
Period size: 227 Copynumber: 2.0 Consensus size: 227
26115150 TCTCAAATCC
* * *
26115160 GCATAAGATTTCTGACGATCTGATGCTGATTTCAGGCTGTCCCGAATCACTTTCACTTTCTGTTC
1 GCATAAGATTTCTGACGATCCGATGCTGATTTCAGACTATCCCGAATCACTTTCACTTTCTGTTC
*
26115225 GGTCTCTTTAATCAAATCAACCCCGTGTATCCTATTTTCACTGAGCTCGGTCCAATACAGTGGTG
66 AGTCTCTTTAATCAAATCAACCCCGTGTATCCTATTTTCACTGAGCTCGGTCCAATACAGTGGTG
26115290 TACGACATTTACGACCGTACAAAGCCTCATAAGGTGCCATTTTAATACTAGATTGAAAGCTGTTA
131 TACGACATTTACGACCGTACAAAGCCTCATAAGGTGCCATTTTAATACTAGATTGAAAGCTGTTA
26115355 TTATAAGCAAATTCAATCAAAGGTAAACATTT
196 TTATAAGCAAATTCAATCAAAGGTAAACATTT
26115387 GCATAAGATTTCTGACGATCCGATGCTGATTTCAGACTATCCCGAATCACTTTCACTTTCTGTTC
1 GCATAAGATTTCTGACGATCCGATGCTGATTTCAGACTATCCCGAATCACTTTCACTTTCTGTTC
*
26115452 AGTCTCTTTAATCAAATCAACCCCGTGTATCTTATTTTCACTGAGCTCGGTCCAATACAGTGGTG
66 AGTCTCTTTAATCAAATCAACCCCGTGTATCCTATTTTCACTGAGCTCGGTCCAATACAGTGGTG
26115517 TACGACATTTACGACCGTACAAAGCCTCATAAGGTGCCATTTTAATACTAGATTGAAAGCTGTTA
131 TACGACATTTACGACCGTACAAAGCCTCATAAGGTGCCATTTTAATACTAGATTGAAAGCTGTTA
26115582 TTATAAGCAAATTCAATCAAAGGTAAA
196 TTATAAGCAAATTCAATCAAAGGTAAA
26115609 TATCGTTCCC
Statistics
Matches: 217, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
227 217 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (227 bp):
GCATAAGATTTCTGACGATCCGATGCTGATTTCAGACTATCCCGAATCACTTTCACTTTCTGTTC
AGTCTCTTTAATCAAATCAACCCCGTGTATCCTATTTTCACTGAGCTCGGTCCAATACAGTGGTG
TACGACATTTACGACCGTACAAAGCCTCATAAGGTGCCATTTTAATACTAGATTGAAAGCTGTTA
TTATAAGCAAATTCAATCAAAGGTAAACATTT
Found at i:26115979 original size:101 final size:101
Alignment explanation
Indices: 26115799--26116000 Score: 323
Period size: 101 Copynumber: 2.0 Consensus size: 101
26115789 TCCGAAATAG
* *
26115799 TATCGTTACTACGTACCTTCAAACTCGAGAATGCAACATCTCAACATATCCTCAAGTATCTGAAT
1 TATCGTTACCACGTACCTTCAAACTCGAGAATACAACATCTCAACATATCCTCAAGTATCTGAAT
* * *
26115864 GATTCGTTCGGATTGACCATCTGTCTGCGGATGGAA
66 AATTCGCTCCGATTGACCATCTGTCTGCGGATGGAA
* * *
26115900 TATCGTTCCCACGTACCTTCAAACTCGAGAATACAACATCTCAACATGTCCTCAAGTATCTGTAT
1 TATCGTTACCACGTACCTTCAAACTCGAGAATACAACATCTCAACATATCCTCAAGTATCTGAAT
*
26115965 AATTCGCTCCGATTGACCATCTGTTTGCGGATGGAA
66 AATTCGCTCCGATTGACCATCTGTCTGCGGATGGAA
26116001 AGCTGTACTA
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 92 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (101 bp):
TATCGTTACCACGTACCTTCAAACTCGAGAATACAACATCTCAACATATCCTCAAGTATCTGAAT
AATTCGCTCCGATTGACCATCTGTCTGCGGATGGAA
Found at i:26118118 original size:37 final size:37
Alignment explanation
Indices: 26118074--26118313 Score: 444
Period size: 37 Copynumber: 6.5 Consensus size: 37
26118064 CACTTGTCCC
26118074 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
*
26118111 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
26118148 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
*
26118185 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
26118222 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
* *
26118259 TGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCT
1 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
26118296 TGATCAGATAAGTGTAGC
1 TGATCAGATAAGTGTAGC
26118314 TAAAGCTATC
Statistics
Matches: 197, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 197 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (37 bp):
TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
Found at i:26118356 original size:52 final size:52
Alignment explanation
Indices: 26118277--26118395 Score: 175
Period size: 52 Copynumber: 2.2 Consensus size: 52
26118267 TAAGTGTAGC
* * * *
26118277 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACTTAT
*
26118330 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACTTAT
26118382 CACTTTGTCACTTG
1 CACTTT-TCACTTG
26118396 ATCAGAAGTA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
52 44 0.73
53 16 0.27
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACTTAT
Found at i:26124986 original size:22 final size:22
Alignment explanation
Indices: 26124958--26125000 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26124948 TTGCGGCGCT
*
26124958 AAAAAGCACCGCTAAAGGCCTA
1 AAAAAGCACCGCTAAAAGCCTA
*
26124980 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCACCGCTAAAAGCCT
26125001 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.28, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAAGCACCGCTAAAAGCCTA
Found at i:26130258 original size:29 final size:29
Alignment explanation
Indices: 26130216--26130377 Score: 159
Period size: 29 Copynumber: 5.6 Consensus size: 29
26130206 TTGATAGTCG
*
26130216 TCACCATCCCTTTTCATATTCGATGGTCA
1 TCACCATCCCTTTTCATATTCGATGGTCC
** *
26130245 AAACCATCCTTTTTCATAGTT-GATGGTCC
1 TCACCATCCCTTTTCATA-TTCGATGGTCC
26130274 TCACCATCCCTTTTCATAGTT-GATGGTCC
1 TCACCATCCCTTTTCATA-TTCGATGGTCC
* * *
26130303 TCACCATCCCTTTTTATAATCGATAGT-C
1 TCACCATCCCTTTTCATATTCGATGGTCC
** * * * *
26130331 GAATCTATCCATTTTCATATTCAATGGTCG
1 TCA-CCATCCCTTTTCATATTCGATGGTCC
26130361 TCACCATCCCTTTTCAT
1 TCACCATCCCTTTTCAT
26130378 TGTTCAATAG
Statistics
Matches: 106, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
28 3 0.03
29 100 0.94
30 3 0.03
ACGTcount: A:0.22, C:0.28, G:0.10, T:0.39
Consensus pattern (29 bp):
TCACCATCCCTTTTCATATTCGATGGTCC
Found at i:26130259 original size:60 final size:58
Alignment explanation
Indices: 26130185--26130301 Score: 155
Period size: 58 Copynumber: 2.0 Consensus size: 58
26130175 ACGATAACCG
* * *
26130185 AAACTATCCATTTTCATAATTTTGATAGTCGTCACCATCCCTTTTCATA-TTCGATGGTCA
1 AAACCATCCATTTTCAT-A-GTTGATAGTCCTCACCATCCCTTTTCATAGTT-GATGGTCA
* *
26130245 AAACCATCCTTTTTCATAGTTGATGGTCCTCACCATCCCTTTTCATAGTTGATGGTC
1 AAACCATCCATTTTCATAGTTGATAGTCCTCACCATCCCTTTTCATAGTTGATGGTC
26130302 CTCACCATCC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
58 33 0.65
59 3 0.06
60 15 0.29
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (58 bp):
AAACCATCCATTTTCATAGTTGATAGTCCTCACCATCCCTTTTCATAGTTGATGGTCA
Found at i:26130313 original size:87 final size:87
Alignment explanation
Indices: 26130206--26130377 Score: 229
Period size: 87 Copynumber: 2.0 Consensus size: 87
26130196 TTTCATAATT
* * * * *
26130206 TTGATAGTCGTCACCATCCCTTTTCATATTCGATGGTCAAAACCATCCTTTTTCATAGTT-GATG
1 TTGATAGTCCTCACCATCCCTTTTCATAATCGATAGTCAAAACCATCCATTTTCATA-TTCAATG
26130270 GTCCTCACCATCCCTTTTCATAG
65 GTCCTCACCATCCCTTTTCATAG
* * * * *
26130293 TTGATGGTCCTCACCATCCCTTTTTATAATCGATAGTCGAATCTATCCATTTTCATATTCAATGG
1 TTGATAGTCCTCACCATCCCTTTTCATAATCGATAGTCAAAACCATCCATTTTCATATTCAATGG
*
26130358 TCGTCACCATCCCTTTTCAT
66 TCCTCACCATCCCTTTTCAT
26130378 TGTTCAATAG
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
86 2 0.03
87 71 0.97
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (87 bp):
TTGATAGTCCTCACCATCCCTTTTCATAATCGATAGTCAAAACCATCCATTTTCATATTCAATGG
TCCTCACCATCCCTTTTCATAG
Found at i:26130400 original size:30 final size:29
Alignment explanation
Indices: 26130308--26130409 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 29
26130298 GGTCCTCACC
* * *
26130308 ATCCCTTTTTA-TAATCGATAGTCGAATCT
1 ATCCCTTTTCATTATTCAATAGTCGAA-CT
* * * *
26130337 ATCCATTTTCA-TATTCAATGGTCGTCACC
1 ATCCCTTTTCATTATTCAATAGTCG-AACT
*
26130366 ATCCCTTTTCATTGTTCAATAGTCGAGACT
1 ATCCCTTTTCATTATTCAATAGTCGA-ACT
26130396 ATCCCTTTTCATTA
1 ATCCCTTTTCATTA
26130410 GTCGATGATC
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
29 30 0.53
30 27 0.47
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.41
Consensus pattern (29 bp):
ATCCCTTTTCATTATTCAATAGTCGAACT
Found at i:26132855 original size:14 final size:16
Alignment explanation
Indices: 26132824--26132856 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
26132814 AAATATTGGT
26132824 TTTTAGCAAAATATGA
1 TTTTAGCAAAATATGA
26132840 TTTTAG-AAAA-ATGA
1 TTTTAGCAAAATATGA
26132854 TTT
1 TTT
26132857 GTTGCGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 4 0.24
16 6 0.35
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (16 bp):
TTTTAGCAAAATATGA
Found at i:26142439 original size:26 final size:26
Alignment explanation
Indices: 26142400--26142465 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
26142390 AAACACTCAA
*
26142400 ATTTTTCAAAAGCATTTCTCAAAAAT
1 ATTTTTCAAAAGCACTTCTCAAAAAT
* * *
26142426 ATTTTTCCACAGCACTTCTCAAAAGT
1 ATTTTTCAAAAGCACTTCTCAAAAAT
26142452 ACTTTTT-AAAAGCA
1 A-TTTTTCAAAAGCA
26142466 TTACCAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 28 0.85
27 5 0.15
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (26 bp):
ATTTTTCAAAAGCACTTCTCAAAAAT
Found at i:26143165 original size:18 final size:18
Alignment explanation
Indices: 26143142--26143176 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26143132 TCAAATCTAA
26143142 CTCTCTCAATTCTCTCAC
1 CTCTCTCAATTCTCTCAC
* *
26143160 CTCTCTTAATTTTCTCA
1 CTCTCTCAATTCTCTCA
26143177 AGTTTTGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (18 bp):
CTCTCTCAATTCTCTCAC
Found at i:26143405 original size:10 final size:10
Alignment explanation
Indices: 26143392--26143416 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26143382 TTTTTTTAAT
26143392 TTTTAAAATA
1 TTTTAAAATA
26143402 TTTTAAAATA
1 TTTTAAAATA
26143412 TTTTA
1 TTTTA
26143417 TTTTGTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAAAATA
Found at i:26145008 original size:3 final size:3
Alignment explanation
Indices: 26145000--26145187 Score: 272
Period size: 3 Copynumber: 62.3 Consensus size: 3
26144990 TAAGAGACAT
*
26145000 TTC TTC TTCC TT- TTC TTC TTC TTC TTC TCC TTC TTC TTC TTC TTC
1 TTC TTC TT-C TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
26145045 TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TT- TTT TTT TTC TTC TTTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC
* *
26145093 TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC TTTC TTT TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC
*
26145139 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
26145187 T
1 T
26145188 ATCTATTTAT
Statistics
Matches: 169, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
2 4 0.02
3 156 0.92
4 9 0.05
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:26147956 original size:21 final size:21
Alignment explanation
Indices: 26147930--26148006 Score: 75
Period size: 21 Copynumber: 3.7 Consensus size: 21
26147920 ACAAGTGCTA
26147930 AACGGAAACCCATAAGGGTTG
1 AACGGAAACCCATAAGGGTTG
* *
26147951 AACGGAAGCTCATAAGCGG-TG
1 AACGGAAACCCATAAG-GGTTG
** * *
26147972 AATTGAAACCCATTAGGGTTA
1 AACGGAAACCCATAAGGGTTG
*
26147993 AACGGAAACTCATA
1 AACGGAAACCCATA
26148007 TGAGTTAACT
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
20 2 0.05
21 38 0.90
22 2 0.05
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (21 bp):
AACGGAAACCCATAAGGGTTG
Found at i:26148013 original size:21 final size:22
Alignment explanation
Indices: 26147989--26148042 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
26147979 ACCCATTAGG
26147989 GTTAAACGGAAA-CTCAT-ATGA
1 GTTAAACGGAAAGCTCATGA-GA
*
26148010 GTT-AAC-TAAAGCTCATGAGA
1 GTTAAACGGAAAGCTCATGAGA
26148030 GTTAAACGGAAAG
1 GTTAAACGGAAAG
26148043 TAAACACGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 3 0.11
20 13 0.48
21 7 0.26
22 4 0.15
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (22 bp):
GTTAAACGGAAAGCTCATGAGA
Found at i:26155123 original size:29 final size:29
Alignment explanation
Indices: 26155091--26155182 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
26155081 TCTTTATAGT
26155091 GATCTCTGTTAAAAGAAATCCTTTGTGGC
1 GATCTCTGTTAAAAGAAATCCTTTGTGGC
* * *
26155120 GATCTCTGTTAAAAAAAAGCATTTGTGGC
1 GATCTCTGTTAAAAGAAATCCTTTGTGGC
* *
26155149 AATCTCTGTTAAAAG-GATCCCTTTGTGGC
1 GATCTCTGTTAAAAGAAAT-CCTTTGTGGC
26155178 GATCT
1 GATCT
26155183 AAGATAAATG
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 1 0.02
29 52 0.98
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (29 bp):
GATCTCTGTTAAAAGAAATCCTTTGTGGC
Found at i:26157399 original size:12 final size:12
Alignment explanation
Indices: 26157384--26157430 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
26157374 ACACTTGTAC
26157384 CAACACCAATGT
1 CAACACCAATGT
26157396 CAACACCAATGT
1 CAACACCAATGT
** *
26157408 CGTCATCAATGT
1 CAACACCAATGT
*
26157420 CAATACCAATG
1 CAACACCAATG
26157431 CCCACATCAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.38, C:0.30, G:0.11, T:0.21
Consensus pattern (12 bp):
CAACACCAATGT
Found at i:26157438 original size:24 final size:24
Alignment explanation
Indices: 26157390--26157442 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
26157380 GTACCAACAC
* **
26157390 CAATGTCAACACCAATGTCGTCAT
1 CAATGTCAACACCAATGCCCACAT
*
26157414 CAATGTCAATACCAATGCCCACAT
1 CAATGTCAACACCAATGCCCACAT
26157438 CAATG
1 CAATG
26157443 CTGACGTATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.30, G:0.11, T:0.23
Consensus pattern (24 bp):
CAATGTCAACACCAATGCCCACAT
Found at i:26159872 original size:92 final size:92
Alignment explanation
Indices: 26159715--26159898 Score: 359
Period size: 92 Copynumber: 2.0 Consensus size: 92
26159705 AATTAGTTAC
26159715 AGAACTTGGTACGTATTGATCCGATACCTTACACCATTGCCACAAAATGTTATACGACCTGTCCC
1 AGAACTTGGTACGTATTGATCCGATACCTTACACCATTGCCACAAAATGTTATACGACCTGTCCC
26159780 AGCCATGATACAACTTATCCATAACCT
66 AGCCATGATACAACTTATCCATAACCT
*
26159807 AGAACTTGGTACGTATTGATCCGATACCTTACCCCATTGCCACAAAATGTTATACGACCTGTCCC
1 AGAACTTGGTACGTATTGATCCGATACCTTACACCATTGCCACAAAATGTTATACGACCTGTCCC
26159872 AGCCATGATACAACTTATCCATAACCT
66 AGCCATGATACAACTTATCCATAACCT
26159899 TTTTTTTGGG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (92 bp):
AGAACTTGGTACGTATTGATCCGATACCTTACACCATTGCCACAAAATGTTATACGACCTGTCCC
AGCCATGATACAACTTATCCATAACCT
Found at i:26164573 original size:24 final size:24
Alignment explanation
Indices: 26164536--26164596 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
26164526 TCCGGGCTGT
*
26164536 ATAATGGGAAGCTCATAAGAGCC-
1 ATAATAGGAAGCTCATAAGAGCCA
*
26164559 ATAATCAGGAAGCTCATACGAGCCA
1 ATAAT-AGGAAGCTCATAAGAGCCA
*
26164584 ATAATGGGAAGCT
1 ATAATAGGAAGCT
26164597 TCGGAATGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 5 0.15
24 23 0.70
25 5 0.15
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (24 bp):
ATAATAGGAAGCTCATAAGAGCCA
Found at i:26164608 original size:48 final size:47
Alignment explanation
Indices: 26164536--26164671 Score: 116
Period size: 48 Copynumber: 2.8 Consensus size: 47
26164526 TCCGGGCTGT
* *
26164536 ATAATGGGAAGCT-CATAAGAGCCATAATCAGGAAGCTCATA-CGAGCC
1 ATAATGGAAAGCTCCA-GAGAGCCATAATCAGGAAGCTCA-AGCGAGCC
* * * * *
26164583 AATAATGGGAAGCTTCGGA-ATGCCATATATCAAGAAGTTCAAGCGAGCC
1 -ATAATGGAAAGCTCCAGAGA-GCCATA-ATCAGGAAGCTCAAGCGAGCC
* *
26164632 ATATTGGAAAGCTCCAGAGAGCCATTAATTAGGAAGCTCA
1 ATAATGGAAAGCTCCAGAGAGCCA-TAATCAGGAAGCTCA
26164672 CAAAGAGCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 12
0.76 0.12 0.13
Matches are distributed among these distances:
47 1 0.01
48 49 0.69
49 21 0.30
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.20
Consensus pattern (47 bp):
ATAATGGAAAGCTCCAGAGAGCCATAATCAGGAAGCTCAAGCGAGCC
Found at i:26164678 original size:26 final size:26
Alignment explanation
Indices: 26164640--26164717 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
26164630 CCATATTGGA
*
26164640 AAGCTC-CAGAGAGCCATTAATTAGG
1 AAGCTCACAAAGAGCCATTAATTAGG
**
26164665 AAGCTCACAAAGAGCC-TTCAATCGGG
1 AAGCTCACAAAGAGCCATT-AATTAGG
*
26164691 AAGCTCACGAAGAGCCATATAA-TAGG
1 AAGCTCACAAAGAGCCAT-TAATTAGG
26164717 A
1 A
26164718 CACTCATAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
25 8 0.19
26 31 0.72
27 3 0.07
28 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (26 bp):
AAGCTCACAAAGAGCCATTAATTAGG
Found at i:26167568 original size:38 final size:38
Alignment explanation
Indices: 26167526--26167598 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
26167516 TAAAAAATCA
* *
26167526 ATAAATCCAAAACAG-TACATTAAAACATGTCAATATCG
1 ATAAATCC-AAACAGATACATCAAAACATATCAATATCG
*
26167564 ATAAATCCAAATAGATACATCAAAACATATCAATA
1 ATAAATCCAAACAGATACATCAAAACATATCAATA
26167599 CGGGTACATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 5 0.16
38 26 0.84
ACGTcount: A:0.53, C:0.18, G:0.05, T:0.23
Consensus pattern (38 bp):
ATAAATCCAAACAGATACATCAAAACATATCAATATCG
Found at i:26172107 original size:108 final size:108
Alignment explanation
Indices: 26171918--26172135 Score: 427
Period size: 108 Copynumber: 2.0 Consensus size: 108
26171908 GCAAGTATAA
26171918 AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
1 AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
26171983 ATATTTTCTGGTAAGTTACACATGTAGAGTAACAAACAGAAGC
66 ATATTTTCTGGTAAGTTACACATGTAGAGTAACAAACAGAAGC
26172026 AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
1 AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
*
26172091 ATATTTTCTGGTAAGTTATACATGTAGAGTAACAAACAGAAGC
66 ATATTTTCTGGTAAGTTACACATGTAGAGTAACAAACAGAAGC
26172134 AA
1 AA
26172136 AAATACCTCG
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33
Consensus pattern (108 bp):
AAGTACAAACACCATGTTAATTAAATTCCTATTTTCTTTGATACAAAAATTCTATCTTAAAGGAT
ATATTTTCTGGTAAGTTACACATGTAGAGTAACAAACAGAAGC
Found at i:26176338 original size:17 final size:18
Alignment explanation
Indices: 26176305--26176338 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26176295 ATAGAGTCAA
*
26176305 CCATTCCTCCCACAACCT
1 CCATTCCTCCAACAACCT
26176323 CCATTCC-CCAACAACC
1 CCATTCCTCCAACAACC
26176339 ATCCTCAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.26, C:0.56, G:0.00, T:0.18
Consensus pattern (18 bp):
CCATTCCTCCAACAACCT
Found at i:26179077 original size:59 final size:59
Alignment explanation
Indices: 26178985--26179116 Score: 203
Period size: 59 Copynumber: 2.2 Consensus size: 59
26178975 TTTATTAGAT
*
26178985 TTGTAATAATTTGTGTAATTAGCCAATGTTTTGTGTAATTAAACAAAACATTACAAATA-
1 TTGTAATAATTTGTGCAATTAGCCAATGTTTTGTGTAATTAAACAAAACATTAC-AATAG
* ** *
26179044 TTGTAACAATTTGTGCAATTAGGTAATGTTTTGTGTAATTATACAAAACATTACAATAG
1 TTGTAATAATTTGTGCAATTAGCCAATGTTTTGTGTAATTAAACAAAACATTACAATAG
26179103 TTGTAATAATTTGT
1 TTGTAATAATTTGT
26179117 ATAATTGAGT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
58 4 0.06
59 62 0.94
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.41
Consensus pattern (59 bp):
TTGTAATAATTTGTGCAATTAGCCAATGTTTTGTGTAATTAAACAAAACATTACAATAG
Found at i:26179932 original size:74 final size:74
Alignment explanation
Indices: 26179840--26179977 Score: 222
Period size: 74 Copynumber: 1.9 Consensus size: 74
26179830 ATACAACATA
* * * *
26179840 TTTACTTCACATCAAATGATGTTTTTAAAAGGAAACTTGACATTTCAAATTCCACTAACAATGTC
1 TTTACTTAACATAAAATGATGTTTTTAAAAGGAAACTTGACATTTCAAATTCCACAAAAAATGTC
26179905 TATCCGGCC
66 TATCCGGCC
**
26179914 TTTACTTAACATAAAATGATGTTTTTAAGGGGAAACTTGACATTTCAAATTCCACAAAAAATGT
1 TTTACTTAACATAAAATGATGTTTTTAAAAGGAAACTTGACATTTCAAATTCCACAAAAAATGT
26179978 TTATACAGCC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 58 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (74 bp):
TTTACTTAACATAAAATGATGTTTTTAAAAGGAAACTTGACATTTCAAATTCCACAAAAAATGTC
TATCCGGCC
Found at i:26183128 original size:17 final size:17
Alignment explanation
Indices: 26183106--26183150 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
26183096 ATGTTCTTGG
26183106 AGTCACTTTATCATCAT
1 AGTCACTTTATCATCAT
26183123 AGTCACTTTATCATCAT
1 AGTCACTTTATCATCAT
26183140 AGTCACTTTAT
1 AGTCACTTTAT
26183151 GACCAGTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (17 bp):
AGTCACTTTATCATCAT
Found at i:26184580 original size:3 final size:3
Alignment explanation
Indices: 26184572--26184647 Score: 98
Period size: 3 Copynumber: 25.3 Consensus size: 3
26184562 CTTTGATTTG
* *
26184572 AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAC AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
26184620 AAT GAT CAT GAT AAT AAC AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
26184648 TTTTTAAAGA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:26187654 original size:16 final size:16
Alignment explanation
Indices: 26187630--26187699 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
26187620 TGGTTCGCTA
*
26187630 TAATAGAATAGAGCTG
1 TAATAGAATAGAACTG
*
26187646 TAATTGAATAGAACTG
1 TAATAGAATAGAACTG
*
26187662 TAATAGAATAGAGCTG
1 TAATAGAATAGAACTG
*
26187678 TAATGGAATAGAACTG
1 TAATAGAATAGAACTG
26187694 TAATAG
1 TAATAG
26187700 TAATTCAATT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (16 bp):
TAATAGAATAGAACTG
Found at i:26187671 original size:32 final size:32
Alignment explanation
Indices: 26187630--26187699 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
26187620 TGGTTCGCTA
*
26187630 TAATAGAATAGAGCTGTAATTGAATAGAACTG
1 TAATAGAATAGAGCTGTAATGGAATAGAACTG
26187662 TAATAGAATAGAGCTGTAATGGAATAGAACTG
1 TAATAGAATAGAGCTGTAATGGAATAGAACTG
26187694 TAATAG
1 TAATAG
26187700 TAATTCAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (32 bp):
TAATAGAATAGAGCTGTAATGGAATAGAACTG
Found at i:26187737 original size:45 final size:44
Alignment explanation
Indices: 26187679--26187771 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
26187669 ATAGAGCTGT
*
26187679 AATGGAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAT-ATTC-ATGTGTTTGGTTGAATGG
*
26187724 AATGGAATAGAACTGTAATAATATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAATATTCATGTGTTTGGTTGAATGG
26187768 AATG
1 AATG
26187772 ATATTGTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 21 0.47
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAATATTCATGTGTTTGGTTGAATGG
Found at i:26188114 original size:24 final size:25
Alignment explanation
Indices: 26188067--26188122 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
26188057 TTATTATTAA
*
26188067 ATATAATATAATAAAAAATCATAAT
1 ATATAATATAATAAAAAATAATAAT
26188092 ATATAATACT-AT-AAAAATAATAAT
1 ATATAATA-TAATAAAAAATAATAAT
26188116 ATATAAT
1 ATATAAT
26188123 CTACTTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 18 0.62
25 10 0.34
26 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (25 bp):
ATATAATATAATAAAAAATAATAAT
Found at i:26191881 original size:2 final size:2
Alignment explanation
Indices: 26191874--26191900 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26191864 ACTAAACATG
26191874 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
26191901 GATTAGCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26199104 original size:39 final size:38
Alignment explanation
Indices: 26199045--26199119 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 38
26199035 TAGGCACATC
26199045 TTTGTCAGCTTCACAATCTAACACAATGAAATCAGCNTA
1 TTTGTCAGCTTCACAATCTAACACAATGAAATCAGC-TA
* * * *
26199084 TTTGTCAGCTTTACAGTCTAACATAATGTAATCAGC
1 TTTGTCAGCTTCACAATCTAACACAATGAAATCAGC
26199120 AGGAAAAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.32
Consensus pattern (38 bp):
TTTGTCAGCTTCACAATCTAACACAATGAAATCAGCTA
Found at i:26218128 original size:44 final size:44
Alignment explanation
Indices: 26218061--26218185 Score: 151
Period size: 44 Copynumber: 2.8 Consensus size: 44
26218051 ATATTGATAT
** * *
26218061 ATTAGCTCTTCTGGAGTTTTCAACTAATTTTGTACTATCAAATA
1 ATTAGCTCTTCTAAAGCTTTCAACTAATTTTGTACTAGCAAATA
* * *
26218105 ATTAGTTGTTCTAAAGCTTTCAACTAATTTTGTACTAGCAAATT
1 ATTAGCTCTTCTAAAGCTTTCAACTAATTTTGTACTAGCAAATA
* * **
26218149 ATTTGCTCTTTTGGAGCTTTCAACTAATTTTGTACTA
1 ATTAGCTCTTCTAAAGCTTTCAACTAATTTTGTACTA
26218186 CCGAATATTG
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (44 bp):
ATTAGCTCTTCTAAAGCTTTCAACTAATTTTGTACTAGCAAATA
Found at i:26219326 original size:41 final size:39
Alignment explanation
Indices: 26219270--26219422 Score: 155
Period size: 41 Copynumber: 3.8 Consensus size: 39
26219260 GATCTTTCGG
* *
26219270 GGCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATACTC
1 GGCTTTAGCAGCGTTTTTTAAAAAGCGCCGCTAATGCTC
26219309 AGGCTTTTAGCAGCG-TTTTTAAAAAGGCGCCGCTAATGCTC
1 -GGC-TTTAGCAGCGTTTTTTAAAAA-GCGCCGCTAATGCTC
* ** *
26219350 GGGGCTTTAGCATCGTTTTCCAAGAAGCGCCGCTAATGCTC
1 --GGCTTTAGCAGCGTTTTTTAAAAAGCGCCGCTAATGCTC
* ** *
26219391 GAGATTTAGTGGCGTTTTTGAAAAAGCGCCGC
1 G-GCTTTAGCAGCGTTTTTTAAAAAGCGCCGC
26219423 AAAAACATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 36 0.38
41 47 0.50
42 10 0.11
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (39 bp):
GGCTTTAGCAGCGTTTTTTAAAAAGCGCCGCTAATGCTC
Found at i:26219415 original size:82 final size:81
Alignment explanation
Indices: 26219266--26219422 Score: 192
Period size: 82 Copynumber: 1.9 Consensus size: 81
26219256 TTGTGATCTT
* ** *
26219266 TCGGGGCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATACTCAGGCTTTTAGCAGCGTTTTTAA
1 TCGGGGCTTTAGCAGCGTTTTCCAAAAAGCGCCGCTAATACTCAGGCATTTAGCAGCGTTTTTAA
26219331 AAAGGCGCCGCTAATGC
66 AAA-GCGCCGCTAATGC
* * * **
26219348 TCGGGGCTTTAGCATCGTTTTCCAAGAAGCGCCGCTAATGCTC-GAG-ATTTAGTGGCGTTTTTG
1 TCGGGGCTTTAGCAGCGTTTTCCAAAAAGCGCCGCTAATACTCAG-GCATTTAGCAGCGTTTTT-
26219411 AAAAAGCGCCGC
64 AAAAAGCGCCGC
26219423 AAAAACATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 21 0.33
82 43 0.67
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (81 bp):
TCGGGGCTTTAGCAGCGTTTTCCAAAAAGCGCCGCTAATACTCAGGCATTTAGCAGCGTTTTTAA
AAAGCGCCGCTAATGC
Found at i:26219903 original size:21 final size:21
Alignment explanation
Indices: 26219865--26219905 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26219855 AAATTCTGGT
** *
26219865 TTAAGGGTTGTGATTTAGGGG
1 TTAAGGGTTAAGAGTTAGGGG
26219886 TTAAGGGTTAAGAGTTAGGG
1 TTAAGGGTTAAGAGTTAGGG
26219906 ATTTATGGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.34
Consensus pattern (21 bp):
TTAAGGGTTAAGAGTTAGGGG
Found at i:26220375 original size:14 final size:14
Alignment explanation
Indices: 26220358--26220395 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
26220348 ATAAAAATCC
26220358 AGTTTATAAAAAAT
1 AGTTTATAAAAAAT
*
26220372 AG-TTATAATAAAT
1 AGTTTATAAAAAAT
*
26220385 ATTTTATAAAA
1 AGTTTATAAAA
26220396 TCACATAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (14 bp):
AGTTTATAAAAAAT
Found at i:26223508 original size:5 final size:5
Alignment explanation
Indices: 26223498--26223523 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26223488 TTTAAATTTG
26223498 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
26223524 CAAACCAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:26225789 original size:19 final size:19
Alignment explanation
Indices: 26225765--26225811 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
26225755 TTTATTACTA
26225765 TATTATTATTAGCATT-TAT
1 TATTATTATTA-CATTATAT
* *
26225784 TATTATTGTTATATTATAT
1 TATTATTATTACATTATAT
26225803 TATTATTAT
1 TATTATTAT
26225812 GCATATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (19 bp):
TATTATTATTACATTATAT
Found at i:26225805 original size:22 final size:22
Alignment explanation
Indices: 26225780--26225824 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
26225770 TTATTAGCAT
*
26225780 TTATTATTATTG-TTATATTATA
1 TTATTATTA-TGCATATATTATA
26225802 TTATTATTATGCATATATTATA
1 TTATTATTATGCATATATTATA
26225824 T
1 T
26225825 GCGCATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATTATTATGCATATATTATA
Found at i:26227563 original size:16 final size:16
Alignment explanation
Indices: 26227542--26227576 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26227532 TTGTGTTTTG
26227542 TTTTGAATGCATGACA
1 TTTTGAATGCATGACA
* *
26227558 TTTTGACTGCATGGCA
1 TTTTGAATGCATGACA
26227574 TTT
1 TTT
26227577 CATTATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (16 bp):
TTTTGAATGCATGACA
Found at i:26230703 original size:43 final size:43
Alignment explanation
Indices: 26230642--26230743 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 43
26230632 TGTGGTAAAA
* * * * *
26230642 ATCTTTAGTGGCGCTTGTGGTTGAAGCG-CTGTTAAAGGTCATG
1 ATCTTTAGCGGCGTTTGTGGTAGAAGCGTC-GCTAAAGATCATG
26230685 ATCTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGATCATG
1 ATCTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGATCATG
* * *
26230728 ATTTTTAACGACGTTT
1 ATCTTTAGCGGCGTTT
26230744 TTTCACATAA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
43 49 0.98
44 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (43 bp):
ATCTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGATCATG
Found at i:26235534 original size:20 final size:20
Alignment explanation
Indices: 26235511--26235557 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
26235501 AGGTTAAGAT
*
26235511 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
26235531 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
26235551 TGAGCTG
1 TGAGCTG
26235558 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:26239573 original size:20 final size:20
Alignment explanation
Indices: 26239544--26239619 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
26239534 ATTTTAAAAT
*
26239544 CAAGTTAAAATGATTTTAAC
1 CAAGTCAAAATGATTTTAAC
*
26239564 CAAGTCAAAATGATTTCAAC
1 CAAGTCAAAATGATTTTAAC
* *
26239584 CAAGTTAAAATCATTTTAA-
1 CAAGTCAAAATGATTTTAAC
26239603 C-AGATCAAAATGATTTT
1 CAAG-TCAAAATGATTTT
26239620 CAAACAAGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
18 2 0.04
19 12 0.25
20 34 0.71
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (20 bp):
CAAGTCAAAATGATTTTAAC
Found at i:26239588 original size:40 final size:40
Alignment explanation
Indices: 26239534--26239630 Score: 126
Period size: 40 Copynumber: 2.4 Consensus size: 40
26239524 TTTTGAAACA
* *
26239534 ATTTTAAAATCAAGTTAAAATGATTTTAACCA-AGTCAAAATG
1 ATTTTCAAA-CAAGTTAAAATCATTTTAA-CAGA-TCAAAATG
*
26239576 A-TTTCAACCAAGTTAAAATCATTTTAACAGATCAAAATG
1 ATTTTCAAACAAGTTAAAATCATTTTAACAGATCAAAATG
26239615 ATTTTCAAACAAGTTA
1 ATTTTCAAACAAGTTA
26239631 GGATTACTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
39 11 0.22
40 32 0.65
41 5 0.10
42 1 0.02
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.33
Consensus pattern (40 bp):
ATTTTCAAACAAGTTAAAATCATTTTAACAGATCAAAATG
Found at i:26241765 original size:25 final size:25
Alignment explanation
Indices: 26241732--26241783 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
26241722 GAGTTGCAAG
*
26241732 ATGCTTATGGTGAATTGGGTTTGGA
1 ATGCCTATGGTGAATTGGGTTTGGA
26241757 ATGCCTATGGTGAATTGGGTTTGGA
1 ATGCCTATGGTGAATTGGGTTTGGA
26241782 AT
1 AT
26241784 TTGAAGTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.06, G:0.35, T:0.38
Consensus pattern (25 bp):
ATGCCTATGGTGAATTGGGTTTGGA
Found at i:26242671 original size:16 final size:16
Alignment explanation
Indices: 26242650--26242681 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26242640 CATTTAGATG
*
26242650 ATTTGCGTAATTCTAA
1 ATTTGCATAATTCTAA
26242666 ATTTGCATAATTCTAA
1 ATTTGCATAATTCTAA
26242682 CATATGTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.44
Consensus pattern (16 bp):
ATTTGCATAATTCTAA
Found at i:26243924 original size:12 final size:12
Alignment explanation
Indices: 26243909--26243950 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
26243899 AATCGGAGGT
26243909 GCATCCGGAGTA
1 GCATCCGGAGTA
*
26243921 GCATCCGAAG-A
1 GCATCCGGAGTA
*
26243932 TGTATCCGGAGTA
1 -GCATCCGGAGTA
26243945 GCATCC
1 GCATCC
26243951 AGAGATGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (12 bp):
GCATCCGGAGTA
Found at i:26243938 original size:24 final size:24
Alignment explanation
Indices: 26243911--26243967 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
26243901 TCGGAGGTGC
26243911 ATCCGGAGTAGCATCC-GAAGATGT
1 ATCCGGAGTAGCATCCAG-AGATGT
26243935 ATCCGGAGTAGCATCCAGAGATGT
1 ATCCGGAGTAGCATCCAGAGATGT
26243959 ATCCGGAGT
1 ATCCGGAGT
26243968 TGCAGGCCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (24 bp):
ATCCGGAGTAGCATCCAGAGATGT
Found at i:26246248 original size:9 final size:9
Alignment explanation
Indices: 26246236--26246296 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
26246226 ATTAAAAACA
26246236 AGAGAGTTG
1 AGAGAGTTG
*
26246245 AGAGACTTG
1 AGAGAGTTG
*
26246254 AGAGGGTTTG
1 AGAGAG-TTG
26246264 AGAGAGTTTG
1 AGAGAG-TTG
*
26246274 AGAGAATTG
1 AGAGAGTTG
26246283 A-AGAAGTTG
1 AGAG-AGTTG
*
26246292 TGAGA
1 AGAGA
26246297 AGGATGTGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
8 2 0.05
9 21 0.50
10 19 0.45
ACGTcount: A:0.34, C:0.02, G:0.39, T:0.25
Consensus pattern (9 bp):
AGAGAGTTG
Found at i:26246266 original size:10 final size:10
Alignment explanation
Indices: 26246236--26246278 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
26246226 ATTAAAAACA
26246236 AGAGAG-TTG
1 AGAGAGTTTG
*
26246245 AGAGA-CTTG
1 AGAGAGTTTG
*
26246254 AGAGGGTTTG
1 AGAGAGTTTG
26246264 AGAGAGTTTG
1 AGAGAGTTTG
26246274 AGAGA
1 AGAGA
26246279 ATTGAAGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 12 0.41
10 17 0.59
ACGTcount: A:0.33, C:0.02, G:0.42, T:0.23
Consensus pattern (10 bp):
AGAGAGTTTG
Found at i:26246679 original size:6 final size:6
Alignment explanation
Indices: 26246668--26246706 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
26246658 ATATTATATA
*
26246668 TGATGG TGATGG TGATGG TGATGG TGATGG CGATGG TGA
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGA
26246707 ATGACGATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.18, C:0.03, G:0.49, T:0.31
Consensus pattern (6 bp):
TGATGG
Found at i:26247459 original size:16 final size:16
Alignment explanation
Indices: 26247440--26247480 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26247430 TGTTTGGGAA
26247440 TTAAAATATTT-AATAT
1 TTAAAAT-TTTGAATAT
26247456 TTAAAATTTTGAATAT
1 TTAAAATTTTGAATAT
*
26247472 TCAAAATTT
1 TTAAAATTT
26247481 ATTGTTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 3 0.13
16 20 0.87
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
TTAAAATTTTGAATAT
Found at i:26247889 original size:22 final size:22
Alignment explanation
Indices: 26247839--26247890 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
26247829 CTAATTATGA
26247839 AAATTATAAATTAAAATTTAGG
1 AAATTATAAATTAAAATTTAGG
***
26247861 GGTTTATAAATTAAAATTGT-GG
1 AAATTATAAATTAAAATT-TAGG
26247883 AAATTATA
1 AAATTATA
26247891 TTAGATTCAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.38
Consensus pattern (22 bp):
AAATTATAAATTAAAATTTAGG
Found at i:26248768 original size:98 final size:98
Alignment explanation
Indices: 26248594--26248790 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
26248584 GTACAATAAA
*
26248594 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
26248659 CCTTTAGAATCCCAAACTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
26248692 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
26248757 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
26248790 A
1 A
26248791 TTATTTTAAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:26249924 original size:19 final size:19
Alignment explanation
Indices: 26249900--26249974 Score: 96
Period size: 19 Copynumber: 3.8 Consensus size: 19
26249890 AATCATATAT
26249900 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
26249919 TCTAAGATTATATATATCATA
1 TCTAAGA-T-TGCATATCATA
**
26249940 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
26249959 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
26249975 CTAAAAAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 30 0.65
20 2 0.04
21 14 0.30
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:26250141 original size:34 final size:31
Alignment explanation
Indices: 26250103--26250173 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 31
26250093 TTCTAATGCT
* *
26250103 TTTTAAATAAATCTTGAATATTAAAAATTGTAAG
1 TTTTAAATAAAT-TTGAA-AATAAAAATT-TAAC
*
26250137 TTTTAAAATAAATTTTAAAATAAAAATTTAAC
1 TTTT-AAATAAATTTGAAAATAAAAATTTAAC
26250169 TTTTA
1 TTTTA
26250174 TGAAATTGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
31 1 0.03
32 7 0.21
33 9 0.27
34 8 0.24
35 8 0.24
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (31 bp):
TTTTAAATAAATTTGAAAATAAAAATTTAAC
Found at i:26256691 original size:22 final size:22
Alignment explanation
Indices: 26256663--26256704 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
26256653 ATAAATGATA
26256663 GTTAATTAGTCATAAATGTGGT
1 GTTAATTAGTCATAAATGTGGT
26256685 GTTAATTAGTCATAAATGTG
1 GTTAATTAGTCATAAATGTG
26256705 CGTTGGGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.40
Consensus pattern (22 bp):
GTTAATTAGTCATAAATGTGGT
Found at i:26259245 original size:3 final size:3
Alignment explanation
Indices: 26259237--26259442 Score: 103
Period size: 3 Copynumber: 70.7 Consensus size: 3
26259227 AAATGCTATC
*
26259237 GAA GAA GAA TAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GGAA -AA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -GAA GAA
* * * *
26259282 TAA GAA -AGA GAA GGAA -AA GAA AAA GGA GGA GAA GAA GAA -AA -AA
1 GAA GAA GA-A GAA -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* *
26259325 GAA -AA TG-A GAA GAA GAA GGAA -AA GGA GAA GAA GAA GGAA -AA GGA
1 GAA GAA -GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA -GAA GAA GAA
* * * * * * * * *
26259369 GAA GGA GAA GAA -AA -AA GAG GAG GAT G-A GGA GGA GAA AAA GTA GTA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* * *
26259414 GTA GTA GTA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
26259443 GAATAGCTCA
Statistics
Matches: 166, Mismatches: 21, Indels: 32
0.76 0.10 0.15
Matches are distributed among these distances:
2 21 0.13
3 132 0.80
4 13 0.08
ACGTcount: A:0.61, C:0.00, G:0.34, T:0.04
Consensus pattern (3 bp):
GAA
Found at i:26260026 original size:26 final size:25
Alignment explanation
Indices: 26259984--26260033 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
26259974 ATGAATGTAG
*
26259984 GTTGTGATCGTACATCAGGGAGTTA
1 GTTGTGATCGTAAATCAGGGAGTTA
*
26260009 GTTGTGACTCGTAAATCAGTGAGTT
1 GTTGTGA-TCGTAAATCAGGGAGTT
26260034 GTTTAGAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.24, C:0.12, G:0.30, T:0.34
Consensus pattern (25 bp):
GTTGTGATCGTAAATCAGGGAGTTA
Found at i:26260201 original size:130 final size:130
Alignment explanation
Indices: 26260048--26260284 Score: 352
Period size: 130 Copynumber: 1.8 Consensus size: 130
26260038 AGAGGAGTAG
**
26260048 TAGTAAATCAACTAACTCAGAGAAGATTATTCATGATTGTAAATCAATAAACTTAGGCTT-TGAT
1 TAGTAAATCAACTAACTCAGAGAAGATTATTCATGATCATAAATCAATAAACTTAGG-TTGTGAT
* *
26260112 CGTAAATCAATGAGCCTTAATAATATCAGCTGTGAC-CATAAATCAGCGAGCTATTTGGAGTAGT
65 CGTAAATCAACGAGCCTTAACAATATCAGCTGTG-CTCATAAATCAGCGAGCTATTTGGAGTAGT
26260176 GA
129 GA
* * * *
26260178 TAGTAAATTAGCTAACTCAGAGAAGATTTTTTATGATCATAAATCAATAAACTTAGGTTGTGATC
1 TAGTAAATCAACTAACTCAGAGAAGATTATTCATGATCATAAATCAATAAACTTAGGTTGTGATC
* *
26260243 GTAAATCAGCGAGCCTTAACAATATCAGTTGTGCTCATAAAT
66 GTAAATCAACGAGCCTTAACAATATCAGCTGTGCTCATAAAT
26260285 TAACTGTCAC
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
129 3 0.03
130 92 0.97
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (130 bp):
TAGTAAATCAACTAACTCAGAGAAGATTATTCATGATCATAAATCAATAAACTTAGGTTGTGATC
GTAAATCAACGAGCCTTAACAATATCAGCTGTGCTCATAAATCAGCGAGCTATTTGGAGTAGTGA
Found at i:26260223 original size:250 final size:249
Alignment explanation
Indices: 26259762--26260251 Score: 619
Period size: 250 Copynumber: 2.0 Consensus size: 249
26259752 GAACTTAGGC
* * * * *
26259762 TGTGATCGTAAATCAGTGACTTGTTAGGAGTAGTGATAATAAATCAAGTAACTTAAAGGAGATTG
1 TGTGATCGTAAATCAGTGACTTGTTAGGAGGAGTGATAATAAATCAACTAACTCAAAGAAGATTA
* * * *
26259827 TTCATGATTGTGAACCAATGAACTTAGGTTGTGATTGTAAATCAACGAGCCTTAATAATATCAGT
66 TTCATGATTGTAAACCAATAAACTTAGGTTGTGATCGTAAATCAACGAGCCTTAATAATATCAGC
**** * * *
26259892 TGTGGTTGTAAATTAGCGAGCTATTTGGGGTAGCGATAATAAATAAACTAACACAGAGAATATTG
131 TGTGACCATAAATCAGCGAGCTATTTGGAGTAGCGATAATAAATAAACTAACACAGAGAAGATTG
** * *
26259957 TTCATGATTGTAAATCAATGAA-TGTAGGTTGTGATCGTACATCAGGGAGTTAGT
196 TTCATGATCATAAATCAATAAACT-TAGGTTGTGATCGTAAATCAGGGAGTTAGT
* * *
26260011 TGTGACTCGTAAATCAGTGAGTTGTTTA-GAGGAGT-AGTAGTAAATCAACTAACTCAGAGAAGA
1 TGTGA-TCGTAAATCAGTGACTTG-TTAGGAGGAGTGA-TAATAAATCAACTAACTCAAAGAAGA
* *
26260074 TTATTCATGATTGTAAATCAATAAACTTAGGCTT-TGATCGTAAATCAATGAGCCTTAATAATAT
63 TTATTCATGATTGTAAACCAATAAACTTAGG-TTGTGATCGTAAATCAACGAGCCTTAATAATAT
* * * * *
26260138 CAGCTGTGACCATAAATCAGCGAGCTATTTGGAGTAGTGATAGTAAATTAGCTAACTCAGAGAAG
127 CAGCTGTGACCATAAATCAGCGAGCTATTTGGAGTAGCGATAATAAATAAACTAACACAGAGAAG
* *
26260203 ATTTTTTATGATCATAAATCAATAAACTTAGGTTGTGATCGTAAATCAG
192 ATTGTTCATGATCATAAATCAATAAACTTAGGTTGTGATCGTAAATCAG
26260252 CGAGCCTTAA
Statistics
Matches: 204, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
249 6 0.03
250 192 0.94
251 6 0.03
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (249 bp):
TGTGATCGTAAATCAGTGACTTGTTAGGAGGAGTGATAATAAATCAACTAACTCAAAGAAGATTA
TTCATGATTGTAAACCAATAAACTTAGGTTGTGATCGTAAATCAACGAGCCTTAATAATATCAGC
TGTGACCATAAATCAGCGAGCTATTTGGAGTAGCGATAATAAATAAACTAACACAGAGAAGATTG
TTCATGATCATAAATCAATAAACTTAGGTTGTGATCGTAAATCAGGGAGTTAGT
Found at i:26262038 original size:15 final size:16
Alignment explanation
Indices: 26262018--26262051 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
26262008 ATTATCATAA
26262018 AATGTGA-ATATGTTT
1 AATGTGATATATGTTT
26262033 AATGTGATATATGTTT
1 AATGTGATATATGTTT
26262049 AAT
1 AAT
26262052 TGAGTGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (16 bp):
AATGTGATATATGTTT
Found at i:26269021 original size:19 final size:19
Alignment explanation
Indices: 26268997--26269033 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
26268987 GTTTACTATT
26268997 CTTTTCTCGACAATAATAA
1 CTTTTCTCGACAATAATAA
26269016 CTTTTCTCGACAATAATA
1 CTTTTCTCGACAATAATA
26269034 TTTATGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (19 bp):
CTTTTCTCGACAATAATAA
Found at i:26276829 original size:19 final size:19
Alignment explanation
Indices: 26276797--26276870 Score: 62
Period size: 19 Copynumber: 3.8 Consensus size: 19
26276787 ATTTTTATAA
26276797 AATTTTATATATTTTTTTTAC-
1 AATTTT-TA-ATTTTTTTT-CT
*
26276818 GATTTTTAATTTTTTTTCT
1 AATTTTTAATTTTTTTTCT
*
26276837 AATTTTTAATATTTTTAT-T
1 AATTTTTAAT-TTTTTTTCT
**
26276856 AAACTTTAATTTTTT
1 AATTTTTAATTTTTT
26276871 ATAAATTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 6 0.13
19 27 0.59
20 8 0.17
21 5 0.11
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (19 bp):
AATTTTTAATTTTTTTTCT
Found at i:26276871 original size:87 final size:87
Alignment explanation
Indices: 26276723--26276881 Score: 189
Period size: 87 Copynumber: 1.8 Consensus size: 87
26276713 ATTTTTATAA
* * *
26276723 TTTTTTACGACTTTTATATTTTTTTATAATTTTCTTATGACTTTATAAAATTTTATATTTTATGA
1 TTTTTTACGACTTTTATATTTTTTTATAATTTTCTAATGACTTTATAAAATTTAATATTTTATAA
*
26276788 TTTTTATAAAATTTTATATATT
66 ATTTTATAAAATTTTATATATT
* * * * *
26276810 TTTTTTACGATTTTTA-ATTTTTTTTCTAATTTT-TAAT-ATTTTTATTAAACTTTAATTTTTTA
1 TTTTTTACGACTTTTATA-TTTTTTTATAATTTTCTAATGA-CTTTA-TAAAATTTAATATTTTA
26276872 TAAATTTTAT
63 TAAATTTTAT
26276882 TGATTTTATT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
85 1 0.02
86 8 0.13
87 51 0.85
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (87 bp):
TTTTTTACGACTTTTATATTTTTTTATAATTTTCTAATGACTTTATAAAATTTAATATTTTATAA
ATTTTATAAAATTTTATATATT
Found at i:26280923 original size:9 final size:9
Alignment explanation
Indices: 26280909--26280937 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
26280899 GCGAAATCAT
26280909 AAAAGAAAA
1 AAAAGAAAA
26280918 AAAAGAAAA
1 AAAAGAAAA
26280927 AAAA-AAAA
1 AAAAGAAAA
26280935 AAA
1 AAA
26280938 CTGTTGAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.35
9 13 0.65
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:26287583 original size:120 final size:120
Alignment explanation
Indices: 26287444--26287691 Score: 460
Period size: 120 Copynumber: 2.1 Consensus size: 120
26287434 ATTATTAATC
26287444 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
26287509 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* *
26287564 TATATTTTATAGTATTATATATTATGATTTTCTTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
26287629 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
26287684 TATGATTA
1 TAT-ATTA
26287692 AATTATTTAT
Statistics
Matches: 123, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
120 120 0.98
121 3 0.02
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
Found at i:26287634 original size:61 final size:61
Alignment explanation
Indices: 26287457--26287647 Score: 230
Period size: 61 Copynumber: 3.2 Consensus size: 61
26287447 ATTATATAGT
26287457 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
* * ** * * * * *
26287518 ATTATATATTTTTATTAAATTATATTTA-ATAATAATTATGTTAA-ATT-A-TATTTTA-TAGT
1 ATTATATATTATGATTTTATTAAATTCATATAAGAA-TAT-TTAATATTAAGAATTTTATTA-A
*
26287577 ATTATATATTATGATTTTCTTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
26287638 ATTATATATT
1 ATTATATATT
26287648 TTTATTAAAT
Statistics
Matches: 103, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
58 6 0.06
59 33 0.32
60 14 0.14
61 44 0.43
62 6 0.06
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (61 bp):
ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:26287893 original size:44 final size:45
Alignment explanation
Indices: 26287829--26287918 Score: 132
Period size: 45 Copynumber: 2.0 Consensus size: 45
26287819 ACATCATTCA
26287829 ATTCAACCAAATACAAGAATT-CTATTACGCCTCTATTCCATTAC
1 ATTCAACCAAATACAAGAATTACTATTACGCCTCTATTCCATTAC
*
26287873 ATTCAACC-AA-ACAATTGAATTACTATTACGTCTCTATTCCATTAC
1 ATTCAACCAAATACAA--GAATTACTATTACGCCTCTATTCCATTAC
26287918 A
1 A
26287919 CCTCTATTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
42 4 0.10
43 2 0.05
44 13 0.31
45 23 0.55
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (45 bp):
ATTCAACCAAATACAAGAATTACTATTACGCCTCTATTCCATTAC
Found at i:26287923 original size:16 final size:16
Alignment explanation
Indices: 26287904--26287934 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26287894 ACTATTACGT
26287904 CTCTATTCCATTACAC
1 CTCTATTCCATTACAC
*
26287920 CTCTATTTCATTACA
1 CTCTATTCCATTACA
26287935 GCGAACCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (16 bp):
CTCTATTCCATTACAC
Found at i:26292726 original size:14 final size:14
Alignment explanation
Indices: 26292707--26292733 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26292697 TTGTCAAGTT
26292707 ACAATTAGGGGATC
1 ACAATTAGGGGATC
26292721 ACAATTAGGGGAT
1 ACAATTAGGGGAT
26292734 TCTTACATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (14 bp):
ACAATTAGGGGATC
Found at i:26293912 original size:25 final size:25
Alignment explanation
Indices: 26293884--26293976 Score: 82
Period size: 25 Copynumber: 3.6 Consensus size: 25
26293874 AAAAATATGT
26293884 ATATAAAGATATATAGATAAATAAG
1 ATATAAAGATATATAGATAAATAAG
* *
26293909 ATATAAAG-TATATAGATATGAAAATTAC
1 ATATAAAGATATATAG--AT--AAATAAG
* *
26293937 AAATAAAGATATATATAT-AATAAG
1 ATATAAAGATATATAGATAAATAAG
*
26293961 ATATGAAATATATATA
1 ATAT-AAAGATATATA
26293977 TGAAAATTAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
24 14 0.26
25 18 0.33
26 2 0.04
27 2 0.04
28 12 0.22
29 6 0.11
ACGTcount: A:0.58, C:0.01, G:0.10, T:0.31
Consensus pattern (25 bp):
ATATAAAGATATATAGATAAATAAG
Found at i:26293984 original size:50 final size:52
Alignment explanation
Indices: 26293886--26293990 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 52
26293876 AAATATGTAT
*
26293886 ATAAAGATATATAGATAAATAAGATATAAAGTATATAGATATGAAAATTACAA
1 ATAAAGATATATAGATAAATAAGATATAAAGTATATA-ATATGAAAATTAAAA
*
26293939 ATAAAGATATATATAT-AATAAGATATGAAA-TATAT-ATATGAAAATTAAAA
1 ATAAAGATATATAGATAAATAAGATAT-AAAGTATATAATATGAAAATTAAAA
26293989 AT
1 AT
26293991 GTATATAAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
50 16 0.33
52 15 0.31
53 18 0.37
ACGTcount: A:0.59, C:0.01, G:0.10, T:0.30
Consensus pattern (52 bp):
ATAAAGATATATAGATAAATAAGATATAAAGTATATAATATGAAAATTAAAA
Found at i:26294189 original size:20 final size:19
Alignment explanation
Indices: 26294145--26294191 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
26294135 TATATATATG
*
26294145 TATACATATAAAGTATAAA
1 TATATATATAAAGTATAAA
**
26294164 TA-ATATATATAAGTATGTA
1 TATATATATA-AAGTATAAA
26294183 TATATATAT
1 TATATATAT
26294192 GGAAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (19 bp):
TATATATATAAAGTATAAA
Found at i:26294251 original size:35 final size:35
Alignment explanation
Indices: 26294181--26294260 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
26294171 TATAAGTATG
* *
26294181 TATATATATA-TGGAAAAAAAATTATAGACGTATA
1 TATATATATATTAGAAAAAAAATTATAGACGGATA
* *
26294215 TATATATATATTATAAAAAAAATGTAT-GATGGATA
1 TATATATATATTAGAAAAAAAAT-TATAGACGGATA
*
26294250 TAGATATATAT
1 TATATATATAT
26294261 ATGAATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
34 10 0.26
35 26 0.67
36 3 0.08
ACGTcount: A:0.51, C:0.01, G:0.11, T:0.36
Consensus pattern (35 bp):
TATATATATATTAGAAAAAAAATTATAGACGGATA
Found at i:26294342 original size:22 final size:22
Alignment explanation
Indices: 26294317--26294378 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
26294307 AACGTTTATA
* *
26294317 AAGAGATATATATATATACAAT
1 AAGATATATAGATATATACAAT
*
26294339 AAGATATATAGATATATATAAT
1 AAGATATATAGATATATACAAT
*
26294361 AAGATATAAAGATATATA
1 AAGATATATAGATATATA
26294379 TAAATAGTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (22 bp):
AAGATATATAGATATATACAAT
Found at i:26294379 original size:22 final size:22
Alignment explanation
Indices: 26294328--26294381 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
26294318 AGAGATATAT
* *
26294328 ATATATACAATAAGATATATAG
1 ATATATATAATAAGATATAAAG
26294350 ATATATATAATAAGATATAAAG
1 ATATATATAATAAGATATAAAG
26294372 ATATATATAA
1 ATATATATAA
26294382 ATAGTTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (22 bp):
ATATATATAATAAGATATAAAG
Found at i:26294475 original size:14 final size:13
Alignment explanation
Indices: 26294435--26294489 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 13
26294425 TAAATAAGTA
*
26294435 AATATAAAATAAA
1 AATATAAAATAAT
26294448 AATATAACAATAAT
1 AATATAA-AATAAT
26294462 AATATAAAACTAAT
1 AATATAAAA-TAAT
** *
26294476 GGTATAATATAAT
1 AATATAAAATAAT
26294489 A
1 A
26294490 GTAGTAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 13 0.37
14 22 0.63
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (13 bp):
AATATAAAATAAT
Found at i:26295581 original size:23 final size:21
Alignment explanation
Indices: 26295554--26295627 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 21
26295544 TGACTTGTTT
*
26295554 GCAGGTGCAAGTGGAGTGGTAGA
1 GCAGGTG-AAGTGG-GTGGCAGA
* *
26295577 GCAGGTGGAGTTGGTGGCAGA
1 GCAGGTGAAGTGGGTGGCAGA
**
26295598 GCAGGTGGCGTGGCGGTGGCAGA
1 GCAGGTGAAGT-G-GGTGGCAGA
26295621 GCAGGTG
1 GCAGGTG
26295628 GCGCAGCGGT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
21 17 0.39
22 4 0.09
23 23 0.52
ACGTcount: A:0.19, C:0.12, G:0.53, T:0.16
Consensus pattern (21 bp):
GCAGGTGAAGTGGGTGGCAGA
Found at i:26295628 original size:23 final size:23
Alignment explanation
Indices: 26295589--26295641 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
26295579 AGGTGGAGTT
**
26295589 GGTGGCAGAGCAGGTGGCGTGGC
1 GGTGGCAGAGCAGGTGGCGCAGC
26295612 GGTGGCAGAGCAGGTGGCGCAGC
1 GGTGGCAGAGCAGGTGGCGCAGC
26295635 GGTGGCA
1 GGTGGCA
26295642 AAGGTTAGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.15, C:0.19, G:0.55, T:0.11
Consensus pattern (23 bp):
GGTGGCAGAGCAGGTGGCGCAGC
Found at i:26296148 original size:3 final size:3
Alignment explanation
Indices: 26296140--26296176 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
26296130 AAAATTGGCT
26296140 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26296177 AGTTGCATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26296634 original size:16 final size:17
Alignment explanation
Indices: 26296604--26296636 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26296594 AACAATTTTT
26296604 TAAAATATTAATTTAATA
1 TAAAATATT-ATTTAATA
26296622 TAAAATATT-TTTAAT
1 TAAAATATTATTTAAT
26296637 TCTATAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAAATATTATTTAATA
Found at i:26297738 original size:17 final size:16
Alignment explanation
Indices: 26297713--26297745 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
26297703 CATAATAATA
26297713 AATAATAATATATTAT
1 AATAATAATATATTAT
26297729 AATAATTAATATATTAT
1 AATAA-TAATATATTAT
26297746 GTATTACTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATAATAATATATTAT
Found at i:26298995 original size:22 final size:22
Alignment explanation
Indices: 26298970--26299012 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26298960 AATTATTTTA
26298970 AAAAACTATAAAAATTATAAAC
1 AAAAACTATAAAAATTATAAAC
** *
26298992 AAAATTTATAAATATTATAAA
1 AAAAACTATAAAAATTATAAA
26299013 ACTATAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAACTATAAAAATTATAAAC
Found at i:26304459 original size:44 final size:44
Alignment explanation
Indices: 26304396--26305298 Score: 291
Period size: 44 Copynumber: 21.0 Consensus size: 44
26304386 ACTGGATGCG
* *
26304396 ATCTGC-CCTACTGTAACTTCAGAGAAATAAGATCAGTGGTTTTA
1 ATCTGCTCC-ACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
** * * ** *
26304440 ATCCACTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCT-
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAG-TGGTTTTA
* * * *
26304484 GTCTGCTCCACTGCAAATTCAGGGAGATAAGA-CTTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATC-AGTGGTTTTA
* * * ***
26304528 ATCCGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
** * *
26304569 ATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
* * **
26304613 ATCTGCTCCACTGTAACTTTC-GAGAGATAAGATTAGCTTCTTCTT-
1 ATCTGCTCCACTGCAAC-TTCAGAGAGATAAGATCAG-TGGTT-TTA
* *
26304658 -TCTGCTCCACTGCAACGTT-AGGGAGATAAGA-CTTGTGG-----
1 ATCTGCTCCACTGCAAC-TTCAGAGAGATAAGATC-AGTGGTTTTA
* * * * ** *
26304696 -T-T-CTCCACTGCAAATTCAGGGAGATAGGATTAGCTTCTTCT-
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAG-TGGTTTTA
* * * * * * ***
26304737 GTCTGTTCCACTGCAACTTCAGGGAGATGAGA-C--TAGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
** * * *
26304778 ATCTGCTCTTCTGTAACTTCAGATAAATAAGATCTA-TGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATC-AGTGGTTTTA
* * * * ** *
26304822 ATCTGCTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCT-
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAG-ATCAG-TGGTTTTA
* * * *
26304866 GTCTGCTCCACTGCAACGTCAGGGAGATAAGA-CTTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATC-AGTGGTTTTA
* * * * * * ** *
26304910 ATCCGCTCCACTACAACTTTAGGGAGATAGGATTAGCTTCTTCT-
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAG-TGGTTTTA
* * * * * * * ***
26304954 GTCCGCTCTACTGCAACTTTAGGGAGATAAGA-C--TAGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
* **
26304995 ATCTGCTCTC-CTACAACTTCAGAGAGATAAGATTTGTGGTTTTA
1 ATCTGCTC-CACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
* * * * * *
26305039 ATCCGCTCCACTGCAACTTCTGGGAGATAAGAT-TGCTTGTTCT-
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAG-TGGTTTTA
* * * * *
26305082 GTCTGCTCCACTGCTACATCAGGGAGATAAGA-CTTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATC-AGTGGTTTTA
** * * * **
26305126 GCCCGCTCCACTGTAACTTCAGGGAGATAAGATTTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
* * * * * ** *
26305170 ATCTGCTCCACTGTAACTTTAGGGAGATAGGATTAGCTTCTTCT-
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAG-TGGTTTTA
* * * ***
26305214 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
* *** *
26305255 ATTTGCTGTTCTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
26305299 CTGATCTGTT
Statistics
Matches: 629, Mismatches: 180, Indels: 100
0.69 0.20 0.11
Matches are distributed among these distances:
35 2 0.00
36 23 0.04
37 2 0.00
38 1 0.00
40 6 0.01
41 106 0.17
42 4 0.01
43 48 0.08
44 409 0.65
45 26 0.04
46 2 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCAGTGGTTTTA
Found at i:26304468 original size:85 final size:85
Alignment explanation
Indices: 26304360--26304644 Score: 317
Period size: 85 Copynumber: 3.3 Consensus size: 85
26304350 CTTCTGTCCT
* * * *
26304360 CTCCACTGTAACTTCATGGAGATAAGACTGGATGCGATCTGCCCTACTGTAACTTCAGAGAAATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAGATA
* *
26304425 AGATCAGTGGTTTTAATCCA
66 AGATCTGTGGTTTTAATCCG
* ** * * *
26304445 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTG-TCTGCTCC-ACTGCAAATTCAGGG
1 CTCCACTGCAACTTCAGGGAGATAAGACT-G--GATGC-GATCTGC-CCTACTGCAACTTCAGAG
26304508 AGATAAGA-CTTGTGGTTTTAATCCG
61 AGATAAGATC-TGTGGTTTTAATCCG
* *
26304533 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAGATA
* *
26304598 AGATCTGTGATTTTAATCTG
66 AGATCTGTGGTTTTAATCCG
* *
26304618 CTCCACTGTAACTTTC-GAGAGATAAGA
1 CTCCACTGCAAC-TTCAGGGAGATAAGA
26304645 TTAGCTTCTT
Statistics
Matches: 166, Mismatches: 24, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
84 2 0.01
85 87 0.52
86 5 0.03
87 2 0.01
88 67 0.40
89 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (85 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAGATA
AGATCTGTGGTTTTAATCCG
Found at i:26304583 original size:129 final size:128
Alignment explanation
Indices: 26304445--26305245 Score: 568
Period size: 129 Copynumber: 6.2 Consensus size: 128
26304435 TTTTAATCCA
*
26304445 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAAATTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAG
*
26304510 ATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTG
66 ATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGTTGCG-TCTG
** * * * ** * *
26304574 CTCTTCTGCAACTTCAGAGAGATAAGATCTGTGATT-TT-AATCTGCTCCACTGTAACTTTC-GA
1 CTCCACTGCAACTTCAGGGAGATAAGAT-T-AGCTTCTTCTGTCTGCTCCACTGCAAC-TTCAGG
** * *
26304636 GAGATAAGA-TTAGCTTCTTCTT--TCTGCTCCACTGCAACGTT-AGGGAGATAAGACTTG-TG-
63 GAGATAAGACTT-G-TGGTT-TTAATCCGCTCCACTGCAAC-TTCAGGGAGATAAGACTGGTTGC
26304695 GT-T-
124 GTCTG
* * *
26304698 CTCCACTGCAAATTCAGGGAGATAGGATTAGCTTCTTCTGTCTGTTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAG
* * * ** * ** * ***
26304763 ATGAGACTAGATGCG-----ATCTGCTCTTCTGTAACTTCAGATAAATAAGATCTATGGTTTTAA
66 ATAAGACTTG-TG-GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGG-TTGCG
26304823 TCTG
125 TCTG
* * *
26304827 CTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAG-ATTAGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGA
* * * * * *
26304891 GATAAGACTTGTGGTTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTAGCTTCTTCTGT
65 GATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACT-G-GT-TGC-GT
*
26304956 CCG
126 CTG
* * * * * * * *
26304959 CTCTACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTG-CT-CT-C-CTACAACTTCAGAGA
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTC-TTCTGTCTGCTCCACTGCAACTTCAGGGA
* * * *
26305020 GATAAGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCTGGGAGATAAGATTGCTTGTTCTGTC
65 GATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGTTG--C-GTC
26305085 TG
127 TG
* * * * * * * *
26305087 CTCCACTGCTACATCAGGGAGATAAGACTTGTGGTT-TT-AGCCCGCTCCACTGTAACTTCAGGG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TT-AGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
* * * * * * * *
26305150 AGATAAGATTTGTGGTTTTAATCTGCTCCACTGTAACTTTAGGGAGATAGGATTAGCTTCTTCTG
64 AGATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACT-G-GT-TGC-G
26305215 TCTG
125 TCTG
26305219 CTCCACTGCAACTTCAGGGAGATAAGA
1 CTCCACTGCAACTTCAGGGAGATAAGA
26305246 CTGGATGCGA
Statistics
Matches: 522, Mismatches: 105, Indels: 87
0.73 0.15 0.12
Matches are distributed among these distances:
120 2 0.00
121 22 0.04
122 4 0.01
123 6 0.01
124 50 0.10
125 2 0.00
126 3 0.01
127 5 0.01
128 40 0.08
129 209 0.40
130 17 0.03
131 69 0.13
132 85 0.16
133 7 0.01
134 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (128 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGTTGCGTCTG
Found at i:26304649 original size:173 final size:173
Alignment explanation
Indices: 26304360--26304697 Score: 518
Period size: 173 Copynumber: 2.0 Consensus size: 173
26304350 CTTCTGTCCT
* * *
26304360 CTCCACTGTAACTTCATGGAGATAAGACTGGATGCGATCTGCCCTACTGTAACTTCAGAGAAATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAAATA
* *
26304425 AGATCAGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATTAGCTTCTTCTGTCTGC
66 AGATCAGTGATTTTAATCCACTCCACTGCAACTTCAGAGAGATAAGATTAGCTTCTTCTGTCTGC
26304490 TCCACTGCAA-ATTCAGGGAGATAAGACTTGTGGTTTTAATCCG
131 TCCACTGCAACATT-AGGGAGATAAGACTTGTGGTTTTAATCCG
* * *
26304533 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAAATA
* ** * *
26304598 AGATCTGTGATTTTAATCTGCTCCACTGTAACTTTC-GAGAGATAAGATTAGCTTCTTCTTTCTG
66 AGATCAGTGATTTTAATCCACTCCACTGCAAC-TTCAGAGAGATAAGATTAGCTTCTTCTGTCTG
*
26304662 CTCCACTGCAACGTTAGGGAGATAAGACTTGTGGTT
130 CTCCACTGCAACATTAGGGAGATAAGACTTGTGGTT
26304698 CTCCACTGCA
Statistics
Matches: 149, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
173 144 0.97
174 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (173 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCCCTACTGCAACTTCAGAGAAATA
AGATCAGTGATTTTAATCCACTCCACTGCAACTTCAGAGAGATAAGATTAGCTTCTTCTGTCTGC
TCCACTGCAACATTAGGGAGATAAGACTTGTGGTTTTAATCCG
Found at i:26304759 original size:209 final size:210
Alignment explanation
Indices: 26304529--26305122 Score: 845
Period size: 209 Copynumber: 2.8 Consensus size: 210
26304519 GTGGTTTTAA
*
26304529 TCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGA
1 TCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGA
* * * *
26304594 GATAAGATCTGTGATTTTAATCTGCTCCACTGTAACTT-TCGAGAGATAAGATTAGCTTCTTCTT
66 GATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCT-GGGAGATAAGATTAGCTTCTTCTG
* *
26304658 TCTGCTCCACTGCAACGTTAGGGAGATAAGACTTGTGGTT-CTCCACTGCAAATTCAGGGAGATA
130 TCTGCTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTCCTCCACTACAAATTCAGGGAGATA
26304722 GGATTAGCTTCTTCTG
195 GGATTAGCTTCTTCTG
* * * * *
26304738 TCTGTTCCACTGCAACTTCAGGGAGATGAGACTAGATGCGATCTGCTCTTCTGTAACTTCAGATA
1 TCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGA
* * *
26304803 AATAAGATCTATGGTTTTAATCTGCTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCTG
66 GATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCTGGGAGATAAG-ATTAGCTTCTTCTG
* *
26304867 TCTGCTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTTTAATCCGCTCCACTACAACTTTAG
130 TCTGCTCCACTGCAACGTCAGGGAGATAAGACTTGTGG---T--T-C-CTCCACTACAAATTCAG
26304932 GGAGATAGGATTAGCTTCTTCTG
188 GGAGATAGGATTAGCTTCTTCTG
* * * *
26304955 TCCGCTCTACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGA
1 TCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGA
* * *
26305020 GATAAGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCTGGGAGATAAGATT-GCTTGTTCTGT
66 GATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCTGGGAGATAAGATTAGCTTCTTCTGT
* *
26305084 CTGCTCCACTGCTACATCAGGGAGATAAGACTTGTGGTT
131 CTGCTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTT
26305123 TTAGCCCGCT
Statistics
Matches: 340, Mismatches: 34, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
208 2 0.01
209 148 0.44
210 1 0.00
211 1 0.00
212 1 0.00
213 1 0.00
214 1 0.00
216 45 0.13
217 138 0.41
218 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (210 bp):
TCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGA
GATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCTGGGAGATAAGATTAGCTTCTTCTGT
CTGCTCCACTGCAACGTCAGGGAGATAAGACTTGTGGTTCCTCCACTACAAATTCAGGGAGATAG
GATTAGCTTCTTCTG
Found at i:26305225 original size:88 final size:88
Alignment explanation
Indices: 26304814--26305247 Score: 406
Period size: 88 Copynumber: 5.0 Consensus size: 88
26304804 ATAAGATCTA
* * *
26304814 TGGTTTTAATCTGCTCCACTGCAACTTCT-GGGGGATAGAATTAGCTTCTTCTGTCTGCTCCACT
1 TGGTTTTAATCTGCTCCACTGCAACTT-TAGGGAGATAGGATTAGCTTCTTCTGTCCGCTCCACT
*
26304878 GCAACGTCAGGGAGATAAGACTTG
65 GCAACTTCAGGGAGATAAGACTTG
* * *
26304902 TGGTTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCCGCTCTACTG
1 TGGTTTTAATCTGCTCCACTGCAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCCGCTCCACTG
* *
26304967 CAACTTTAGGGAGATAAGACTAG
66 CAACTTCAGGGAGATAAGACTTG
* * * * * ** * *
26304990 ATGCG-----ATCTGCTCTC-CTACAACTTCAGAGAGATAAGATTTG-TGGTTTTAATCCGCTCC
1 -TG-GTTTTAATCTGCTC-CACTGCAACTTTAGGGAGATAGGATTAGCTTCTTCT-GTCCGCTCC
*
26305048 ACTGCAACTTCTGGGAGATAAGA-TTG
62 ACTGCAACTTCAGGGAGATAAGACTTG
* * * * * * * * * * *
26305074 CTTGTTCT-GTCTGCTCCACTGCTACATCAGGGAGATAAGACTTGTGGTT-TT-AGCCCGCTCCA
1 -TGGTTTTAATCTGCTCCACTGCAACTTTAGGGAGATAGGA-TT-AGCTTCTTCTGTCCGCTCCA
* *
26305136 CTGTAACTTCAGGGAGATAAGATTTG
63 CTGCAACTTCAGGGAGATAAGACTTG
* *
26305162 TGGTTTTAATCTGCTCCACTGTAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCTGCTCCACTG
1 TGGTTTTAATCTGCTCCACTGCAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCCGCTCCACTG
26305227 CAACTTCAGGGAGATAAGACT
66 CAACTTCAGGGAGATAAGACT
26305248 GGATGCGATT
Statistics
Matches: 279, Mismatches: 50, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
83 1 0.00
84 7 0.03
85 57 0.20
86 5 0.02
87 63 0.23
88 138 0.49
89 6 0.02
90 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.32
Consensus pattern (88 bp):
TGGTTTTAATCTGCTCCACTGCAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCCGCTCCACTG
CAACTTCAGGGAGATAAGACTTG
Found at i:26305274 original size:216 final size:215
Alignment explanation
Indices: 26304488--26305198 Score: 725
Period size: 209 Copynumber: 3.3 Consensus size: 215
26304478 TCTTCTGTCT
* * * * *
26304488 GCTCCACTGCAAATTCAGGGAGATAAGACTT-G-TGGTTTTAATCCGCTCCACTGCAACTTCAGG
1 GCTCCACTACAACTTCAGGGAGATAAGA-TTAGCTGCTTCT-ATCCGCTCCACTGCAACTTTAGG
* * * * *
26304551 GAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCT-GTGATTTTAAT
64 GAGATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGA-CTGGTGGTATT-AT
* * * * *
26304615 CTGCTCCACTGTAACTT-TCGAGAGATAAGATTAGCTTCTTCTTTCTGCTCCACTGCAACGTTAG
127 C-GCTCCACTGCAACTTCT-GGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACATCAG
26304679 GGAGATAAGACTTGTGG--TT-----
190 GGAGATAAGACTTGTGGTTTTAACCC
* * * * * * * *
26304698 -CTCCACTGCAAATTCAGGGAGATAGGATTAGCTTCTTCTGTCTGTTCCACTGCAACTTCAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGCTGCTTCTATCCGCTCCACTGCAACTTTAGGGA
* * ** * * * *
26304762 GATGAGACTAGATGCGATCTGCTCTTCTGTAACTTCAGATAAATAAGATCT-ATGGTTTTAATCT
66 GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGA-CTGGTGGTATT-ATC-
* *
26304826 GCTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGGG
128 GCTCCACTGCAACTTCTGGGAGATAAG-ATTAGCTTCTTCTGTCTGCTCCACTGCAACATCAGGG
*
26304890 AGATAAGACTTGTGGTTTTAATCC
192 AGATAAGACTTGTGGTTTTAACCC
* * * * *
26304914 GCTCCACTACAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCCGCTCTACTGCAACTTTAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGCTGCTTCTATCCGCTCCACTGCAACTTTAGGGA
* * *
26304979 GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGATTTGTGGTTTTAATCCG
66 GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGACTGGTGGTATT-AT-CG
* *
26305044 CTCCACTGCAACTTCTGGGAGATAAGATT-GCTTGTTCTGTCTGCTCCACTGCTACATCAGGGAG
129 CTCCACTGCAACTTCTGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACATCAGGGAG
*
26305108 ATAAGACTTGTGGTTTTAGCCC
194 ATAAGACTTGTGGTTTTAACCC
** * * * * *
26305130 GCTCCACTGTAACTTCAGGGAGATAAGATTTG-TGGTTTTAATCTGCTCCACTGTAACTTTAGGG
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGCTGCTTCT-ATCCGCTCCACTGCAACTTTAGGG
26305194 AGATA
65 AGATA
26305199 GGATTAGCTT
Statistics
Matches: 433, Mismatches: 52, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
208 4 0.01
209 175 0.40
210 5 0.01
211 2 0.00
215 4 0.01
216 105 0.24
217 135 0.31
218 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (215 bp):
GCTCCACTACAACTTCAGGGAGATAAGATTAGCTGCTTCTATCCGCTCCACTGCAACTTTAGGGA
GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGACTGGTGGTATTATCGCT
CCACTGCAACTTCTGGGAGATAAGATTAGCTTCTTCTGTCTGCTCCACTGCAACATCAGGGAGAT
AAGACTTGTGGTTTTAACCC
Found at i:26305284 original size:216 final size:214
Alignment explanation
Indices: 26304488--26305287 Score: 693
Period size: 209 Copynumber: 3.7 Consensus size: 214
26304478 TCTTCTGTCT
* * * * *
26304488 GCTCCACTGCAAATTCAGGGAGATAAGACTT-G-TGGTTTTAATCCGCTCCACTGCAACTTCAGG
1 GCTCCACTACAACTTCAGGGAGATAAGA-TTAGCTGCTTCT-ATCCGCTCCACTGCAACTTTAGG
* * * * *
26304551 GAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCT-GTGATTTTAAT
64 GAGATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGA-CTGGTGGTATT-AT
* * * *
26304615 CTGCTCCACTGTAACTTTC-GAGAGATAAGATTAGCTTCTTCTTTCTGCTCCACTGCAACGTTAG
127 C-GCTCCACTGCAAC-TTCAGAGAGATAAGATT-GCTTCTTCTGTCTGCTCCACTGCAACATCAG
26304679 GGAGATAAGACTTGTGG--TT-----
189 GGAGATAAGACTTGTGGTTTTAACCC
* * * * * * * *
26304698 -CTCCACTGCAAATTCAGGGAGATAGGATTAGCTTCTTCTGTCTGTTCCACTGCAACTTCAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGCTGCTTCTATCCGCTCCACTGCAACTTTAGGGA
* * ** * * * *
26304762 GATGAGACTAGATGCGATCTGCTCTTCTGTAACTTCAGATAAATAAGATCT-ATGGTTTTAATCT
66 GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGA-CTGGTGGTATT-ATC-
* * * *
26304826 GCTCCACTGCAACTTCTGGGGGAT-AGAATTAGCTTCTTCTGTCTGCTCCACTGCAACGTCAGGG
128 GCTCCACTGCAACTTCAGAGAGATAAG-ATT-GCTTCTTCTGTCTGCTCCACTGCAACATCAGGG
*
26304890 AGATAAGACTTGTGGTTTTAATCC
191 AGATAAGACTTGTGGTTTTAACCC
* * * * *
26304914 GCTCCACTACAACTTTAGGGAGATAGGATTAGCTTCTTCTGTCCGCTCTACTGCAACTTTAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGCTGCTTCTATCCGCTCCACTGCAACTTTAGGGA
* * *
26304979 GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGATTTGTGGTTTTAATCCG
66 GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGACTGGTGGTATT-AT-CG
* * * *
26305044 CTCCACTGCAACTTCTGGGAGATAAGATTGCTTGTTCTGTCTGCTCCACTGCTACATCAGGGAGA
129 CTCCACTGCAACTTCAGAGAGATAAGATTGCTTCTTCTGTCTGCTCCACTGCAACATCAGGGAGA
*
26305109 TAAGACTTGTGGTTTTAGCCC
194 TAAGACTTGTGGTTTTAACCC
** * * * * *
26305130 GCTCCACTGTAACTTCAGGGAGATAAGATTTG-TGGTTTTAATCTGCTCCACTGTAACTTTAGGG
1 GCTCCACTACAACTTCAGGGAGATAAGATTAGCTGCTTCT-ATCCGCTCCACTGCAACTTTAGGG
* * * * * * *
26305194 AGATAGGATTAGCTTC-TTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCG-AT
65 AGATAAGACTAGATGCGATCTG-CT-CT-C-CTACAACTTCAGAGAGATAAGACTGG-TG-GTAT
***
26305257 T-T-GCTGTTCTGCAACTTCAGAGAGATAAGAT
124 TATCGCTCCACTGCAACTTCAGAGAGATAAGAT
26305288 CTGTGGTTTT
Statistics
Matches: 501, Mismatches: 67, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
208 7 0.01
209 173 0.35
210 4 0.01
211 2 0.00
215 8 0.02
216 138 0.28
217 137 0.27
218 5 0.01
219 22 0.04
220 4 0.01
221 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (214 bp):
GCTCCACTACAACTTCAGGGAGATAAGATTAGCTGCTTCTATCCGCTCCACTGCAACTTTAGGGA
GATAAGACTAGATGCGATCTGCTCTCCTACAACTTCAGAGAGATAAGACTGGTGGTATTATCGCT
CCACTGCAACTTCAGAGAGATAAGATTGCTTCTTCTGTCTGCTCCACTGCAACATCAGGGAGATA
AGACTTGTGGTTTTAACCC
Found at i:26306168 original size:26 final size:26
Alignment explanation
Indices: 26306139--26306188 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26306129 CAAGTATCTT
26306139 GAAAAGAACAAAGTTTTCCAAGAATA
1 GAAAAGAACAAAGTTTTCCAAGAATA
*
26306165 GAAAAGAATAAAGTTTTCCAAGAA
1 GAAAAGAACAAAGTTTTCCAAGAA
26306189 CAACAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.20
Consensus pattern (26 bp):
GAAAAGAACAAAGTTTTCCAAGAATA
Found at i:26312694 original size:44 final size:44
Alignment explanation
Indices: 26312638--26312722 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
26312628 TTAATAGGTC
* *
26312638 TAAGTCATTTAATTGGTCTAAATTATTACAGCAACTTAAGTGTT
1 TAAGTCATTTAATTGGTCTAAATTACTACAGCAAATTAAGTGTT
* ** *
26312682 TAAGTTATTTAATTTTTCTAGATTACTACAGCAAATTAAGT
1 TAAGTCATTTAATTGGTCTAAATTACTACAGCAAATTAAGT
26312723 TGTCTTAAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (44 bp):
TAAGTCATTTAATTGGTCTAAATTACTACAGCAAATTAAGTGTT
Found at i:26321466 original size:44 final size:47
Alignment explanation
Indices: 26321416--26321519 Score: 133
Period size: 44 Copynumber: 2.3 Consensus size: 47
26321406 GGTCTAAGTC
* * * *
26321416 ATTTAATTGGTCTAAATTATTACAGCAACTTAAG-TGT-TTAAA-TT
1 ATTTAATTTGTCTAAATTACTACAGCAAATTAAGTTGTCTTAAACTA
* *
26321460 ATTTAATTTTTCTAGATTACTACAGCAAATTAAGTTGTCTTAAACTA
1 ATTTAATTTGTCTAAATTACTACAGCAAATTAAGTTGTCTTAAACTA
26321507 ATTTAATTTGTCT
1 ATTTAATTTGTCT
26321520 TGTTTGCAGC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
44 29 0.58
45 3 0.06
46 5 0.10
47 13 0.26
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.45
Consensus pattern (47 bp):
ATTTAATTTGTCTAAATTACTACAGCAAATTAAGTTGTCTTAAACTA
Found at i:26325620 original size:23 final size:22
Alignment explanation
Indices: 26325594--26325650 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
26325584 AGTAAAAATG
26325594 AATGCAAAATAATAAATGATGAC
1 AATGCAAAATAATAAATGAT-AC
*
26325617 AATG-TAAAT-A-AAATGATAC
1 AATGCAAAATAATAAATGATAC
*
26325636 AA-GCAAAACAATAAA
1 AATGCAAAATAATAAA
26325651 CAATAAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 8 0.29
21 4 0.14
22 4 0.14
23 4 0.14
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.19
Consensus pattern (22 bp):
AATGCAAAATAATAAATGATAC
Found at i:26326270 original size:18 final size:18
Alignment explanation
Indices: 26326181--26326270 Score: 69
Period size: 18 Copynumber: 5.1 Consensus size: 18
26326171 ACAACAACAA
*
26326181 TAATAATAATAATAATAG
1 TAATAATAATAATAATAT
*
26326199 TAATAA-AGATAATAATAC
1 TAATAATA-ATAATAATAT
** * * *
26326217 T-ATAGCAATGATGACAT
1 TAATAATAATAATAATAT
*
26326234 TAATAATAATAATACTAT
1 TAATAATAATAATAATAT
26326252 TAATAAT-ATAAATAATAT
1 TAATAATAAT-AATAATAT
26326270 T
1 T
26326271 GCTGCTAATA
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
17 13 0.24
18 42 0.76
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (18 bp):
TAATAATAATAATAATAT
Found at i:26326284 original size:3 final size:3
Alignment explanation
Indices: 26326179--26326268 Score: 51
Period size: 3 Copynumber: 30.3 Consensus size: 3
26326169 CAACAACAAC
* * **
26326179 AAT AAT AAT AAT AAT AAT AGT AAT AA- AGAT AAT AAT ACT -AT AGC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* * * * * *
26326223 AAT GAT GAC ATT AAT AAT AAT AAT ACT ATT AAT AAT -AT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
26326268 A
1 A
26326269 TTGCTGCTAA
Statistics
Matches: 65, Mismatches: 17, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
2 4 0.06
3 58 0.89
4 3 0.05
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26326964 original size:6 final size:6
Alignment explanation
Indices: 26326953--26327002 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
26326943 TGTAATTTCG
* * *
26326953 AAATAA AAAT-A AAATAA AAATAA AACAAAA AAATAT AAAT-G AAATAA
1 AAATAA AAATAA AAATAA AAATAA AA-ATAA AAATAA AAATAA AAATAA
26327000 AAA
1 AAA
26327003 AAGACATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
5 9 0.25
6 22 0.61
7 5 0.14
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Done.