Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 87 of 144
Found at i:26326967 original size:11 final size:11
Alignment explanation
Indices: 26326953--26326983 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
26326943 TGTAATTTCG
26326953 AAATAAAAATA
1 AAATAAAAATA
26326964 AAATAAAAATA
1 AAATAAAAATA
*
26326975 AAACAAAAA
1 AAATAAAAA
26326984 AATATAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:26326987 original size:19 final size:19
Alignment explanation
Indices: 26326963--26327004 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26326953 AAATAAAAAT
26326963 AAAATAAAAATAAAACAAA
1 AAAATAAAAATAAAACAAA
* * *
26326982 AAAATATAAATGAAATAAA
1 AAAATAAAAATAAAACAAA
26327001 AAAA
1 AAAA
26327005 GACATTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (19 bp):
AAAATAAAAATAAAACAAA
Found at i:26328053 original size:313 final size:313
Alignment explanation
Indices: 26327485--26328108 Score: 1248
Period size: 313 Copynumber: 2.0 Consensus size: 313
26327475 TTTTGCCCGG
26327485 TCCCGCCGAGTCTTCACTTATTCTGGTGCTTCTTTTCTTCAAGTAGCTTCGTTTCAGTCCATTGT
1 TCCCGCCGAGTCTTCACTTATTCTGGTGCTTCTTTTCTTCAAGTAGCTTCGTTTCAGTCCATTGT
26327550 GTCTTGTTGCTTCGATCCATTCCACTGCACTTCAAAGAGATGCTTCTTGTAGCTTCAATCCACTC
66 GTCTTGTTGCTTCGATCCATTCCACTGCACTTCAAAGAGATGCTTCTTGTAGCTTCAATCCACTC
26327615 TGCTGCAACTTTAGGGGGACGAGATTTATGGTTTTAGTCTGCTCCACATCTTTGATCTTCTCCTC
131 TGCTGCAACTTTAGGGGGACGAGATTTATGGTTTTAGTCTGCTCCACATCTTTGATCTTCTCCTC
26327680 TACTACTTAGGGGGGACAGAATCTGTAATCTTTGACCTACTCCACTACTGCTTAGGGTGATAGGA
196 TACTACTTAGGGGGGACAGAATCTGTAATCTTTGACCTACTCCACTACTGCTTAGGGTGATAGGA
26327745 CTAATGGCATAAATCCACTTCTCCGCTGTATTGGGAAGATAAGATTCACCAGC
261 CTAATGGCATAAATCCACTTCTCCGCTGTATTGGGAAGATAAGATTCACCAGC
26327798 TCCCGCCGAGTCTTCACTTATTCTGGTGCTTCTTTTCTTCAAGTAGCTTCGTTTCAGTCCATTGT
1 TCCCGCCGAGTCTTCACTTATTCTGGTGCTTCTTTTCTTCAAGTAGCTTCGTTTCAGTCCATTGT
26327863 GTCTTGTTGCTTCGATCCATTCCACTGCACTTCAAAGAGATGCTTCTTGTAGCTTCAATCCACTC
66 GTCTTGTTGCTTCGATCCATTCCACTGCACTTCAAAGAGATGCTTCTTGTAGCTTCAATCCACTC
26327928 TGCTGCAACTTTAGGGGGACGAGATTTATGGTTTTAGTCTGCTCCACATCTTTGATCTTCTCCTC
131 TGCTGCAACTTTAGGGGGACGAGATTTATGGTTTTAGTCTGCTCCACATCTTTGATCTTCTCCTC
26327993 TACTACTTAGGGGGGACAGAATCTGTAATCTTTGACCTACTCCACTACTGCTTAGGGTGATAGGA
196 TACTACTTAGGGGGGACAGAATCTGTAATCTTTGACCTACTCCACTACTGCTTAGGGTGATAGGA
26328058 CTAATGGCATAAATCCACTTCTCCGCTGTATTGGGAAGATAAGATTCACCA
261 CTAATGGCATAAATCCACTTCTCCGCTGTATTGGGAAGATAAGATTCACCA
26328109 TCTTCGATCT
Statistics
Matches: 311, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
313 311 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (313 bp):
TCCCGCCGAGTCTTCACTTATTCTGGTGCTTCTTTTCTTCAAGTAGCTTCGTTTCAGTCCATTGT
GTCTTGTTGCTTCGATCCATTCCACTGCACTTCAAAGAGATGCTTCTTGTAGCTTCAATCCACTC
TGCTGCAACTTTAGGGGGACGAGATTTATGGTTTTAGTCTGCTCCACATCTTTGATCTTCTCCTC
TACTACTTAGGGGGGACAGAATCTGTAATCTTTGACCTACTCCACTACTGCTTAGGGTGATAGGA
CTAATGGCATAAATCCACTTCTCCGCTGTATTGGGAAGATAAGATTCACCAGC
Found at i:26328269 original size:46 final size:46
Alignment explanation
Indices: 26328217--26330645 Score: 3303
Period size: 46 Copynumber: 52.6 Consensus size: 46
26328207 CTTCTCGCCA
* *
26328217 CTGCCAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26328263 CTGCCAAATACAGGAAGGCAAGATCTGATATCTTCGATCCCCTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26328309 CTGCCAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26328355 CTGCCAAATACAGGAAGGCAAGATCTGATATCTTCGATCCCCTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26328401 CTGCCAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26328447 CTGCCAAATACAGGAAGGCAAGATCTGATATCTTCGATCCCCTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26328493 CTGCCAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26328539 CTGCCAAATACAAGAAGACAAGATCTGCTTTCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
*
26328585 CTGCCAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
*
26328631 CTGCCAAATACAGGAAGACAAGATCTGCCATCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26328677 CTGCCAATTACAGGAAGACAAGATCTACTATCCTT-GATCTCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTAT-CTTCGATCCCCTCCG
* * * * * * ***
26328723 CTGCCAAATATAAGAAGATAAAATCTACTCTCTTCGATTTTCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
*
26328769 CTGCCAAATACAGGAAGACAAGATCTGCTATTTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26328815 CTACCAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * * * * *
26328861 CTGCCAATTACAAGAAGACAAGATCTGTTATCCTCGATCTCTTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * **
26328907 CTGCCAAATACATGAAGATAAGATCTGCTATCTTCGATCTTCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26328953 CTGCAAAATATAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * *
26328999 CTGCCAATTATAGGAAGACAAGATCTGCTATCCTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26329045 CTACCAAATACTGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26329091 CTGCCAATTACAGGAAGACAAGATAGACAAGATCTGCTATCTTCAATCCCCTCCG
1 CTGCCAAATAC----AG----GA-AGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26329146 CTGCCAAATACAGGAAGACAAGATCTGCTATCCTCGATCTCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* ** *
26329192 CTGCCAAATACAGAAAGACAAGATCTGCTATCTTCGATCTTCTTCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
26329238 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * *
26329284 CTGCCAAATACAAGAATACAAGATCTGCTATCTTCGATCCCTTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26329330 CTGCCAAATACAGGAAGATAAGATCTGCTATCTTAGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26329376 CTGCCAAATACAGGAAGACAAGATCTGCTATCCTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26329422 CTACCAAATACTGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26329468 CTGCTAAATACAGGAAGACAAGATCTGCTATCCTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * *
26329514 CTACCAAATACTGGAAGACAAGATCTGCTATCTTCGATCTCTTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * * *
26329560 CTGTCAAATACATGAATATAAGATCTGCTATCTTTGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
*
26329606 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTTGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * * * *
26329652 CTGCCAATTATAGGAAGGCAAGATCTGCTATCCTCGATCTCCTTCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * * *** *
26329698 CTGCCAAATACATGAAGATAAGATTTGCTATCTTTGATCTTTTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26329744 CTGCCAAATACAAGAAGATAAGATCTGCTATCTTCGATCGCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26329790 CTGCAAAATATAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * * *
26329836 CTGCCAATTATAGGAAGACAAGATCTGCTATCCTCGATCTCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* ** *
26329882 CTGCCAAATACAGAAAGACAAGATCTGCTATCTTCGATCTTCTTCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
*
26329928 CTGCCAAATACAGGAAGACAAGATCTACTATCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
*
26329974 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTTCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26330020 CTACCAATTACAGGAAGACAAGATCTGCTATCTTCGATCCCCTTCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26330066 CTACCAATTACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26330112 CTGCCAAATACAGGAAGACAAGACCTGCTATCTTCGATCCCCTTCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * *
26330158 CTACCAATTACAGGAAGACAAGATCTGCTATCATCGATCTCCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * * **
26330204 CTGCCAAATACATGAAGATAAGATCTGCTCTCTTTGATCTTCTCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
*
26330250 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26330296 CTGCCAAATACAGGAAGGCAAGATCTGATATCTTCGATCCCCTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26330342 CTGCCAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * *
26330388 CTGCCAAATACAGGAAGGCAAGATCTGATATCTTCGATCCCCTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* **
26330434 CTGCCAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTA
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26330480 CTGCCAAATACAGGAAGACAAGATCTTCTATCTTCGATCCCCGCCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * * *
26330526 CTGCCAATTACAGGAAGACAAGATTTGCTATCCTCGATCTCCTCAG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* * * * *
26330572 CTGCCAAATACAGAAAGATAAGATCTGCTATTTTCGATCTCCTTCG
1 CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
* *
26330618 CTGCCAAATACAGGACGATAAGATCTGC
1 CTGCCAAATACAGGAAGACAAGATCTGC
26330646 AACTTCATTG
Statistics
Matches: 2092, Mismatches: 280, Indels: 22
0.87 0.12 0.01
Matches are distributed among these distances:
45 3 0.00
46 2039 0.97
47 5 0.00
50 1 0.00
51 2 0.00
54 2 0.00
55 40 0.02
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG
Found at i:26329144 original size:55 final size:55
Alignment explanation
Indices: 26329060--26329169 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
26329050 AAATACTGGA
* *
26329060 AGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAATTACAGGAAGACAAGAT
1 AGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATACAGGAAGACAAGAT
26329115 AGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATACAGGAAGACAAGAT
1 AGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATACAGGAAGACAAGAT
26329170 CTGCTATCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (55 bp):
AGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATACAGGAAGACAAGAT
Found at i:26331851 original size:10 final size:10
Alignment explanation
Indices: 26331836--26331870 Score: 54
Period size: 9 Copynumber: 3.5 Consensus size: 10
26331826 TACTTTTTCA
26331836 TTTTTCATTT
1 TTTTTCATTT
26331846 TTTTTCA-TT
1 TTTTTCATTT
26331855 TTTTTCATCTT
1 TTTTTCAT-TT
26331866 TTTTT
1 TTTTT
26331871 TCATCATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.39
10 7 0.30
11 7 0.30
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTCATTT
Found at i:26331868 original size:12 final size:13
Alignment explanation
Indices: 26331853--26331883 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
26331843 TTTTTTTTCA
26331853 TTTTTTTCATC-T
1 TTTTTTTCATCAT
26331865 TTTTTTTCATCAT
1 TTTTTTTCATCAT
26331878 TTTTTT
1 TTTTTT
26331884 GTTTGAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTTCATCAT
Found at i:26331881 original size:10 final size:10
Alignment explanation
Indices: 26331836--26331869 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
26331826 TACTTTTTCA
*
26331836 TTTTTCATTT
1 TTTTTCATCT
26331846 TTTTTCAT-T
1 TTTTTCATCT
26331855 TTTTTCATCT
1 TTTTTCATCT
26331865 TTTTT
1 TTTTT
26331870 TTCATCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTCATCT
Found at i:26332730 original size:10 final size:10
Alignment explanation
Indices: 26332710--26332773 Score: 80
Period size: 10 Copynumber: 6.5 Consensus size: 10
26332700 AATTTTTGAC
26332710 TTTGA-TTTT
1 TTTGATTTTT
26332719 TTTGATTTTT
1 TTTGATTTTT
26332729 TTTGATTTTT
1 TTTGATTTTT
26332739 TTTGATTTTT
1 TTTGATTTTT
*
26332749 TGTT-TTTTTT
1 T-TTGATTTTT
26332759 GTTTG-TTTTT
1 -TTTGATTTTT
26332769 TTTGA
1 TTTGA
26332774 GTCTGAACTC
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
9 9 0.18
10 37 0.76
11 3 0.06
ACGTcount: A:0.08, C:0.00, G:0.12, T:0.80
Consensus pattern (10 bp):
TTTGATTTTT
Found at i:26332747 original size:17 final size:17
Alignment explanation
Indices: 26332710--26332771 Score: 65
Period size: 17 Copynumber: 3.5 Consensus size: 17
26332700 AATTTTTGAC
*
26332710 TTTGATTTTTTTGATTTTT
1 TTTGTTTTTTTTGA--TTT
26332729 TTTGATTTTTTTTGATTT
1 TTTG-TTTTTTTTGATTT
26332747 TTTGTTTTTTTTG-TTT
1 TTTGTTTTTTTTGATTT
26332763 GTTT-TTTTT
1 -TTTGTTTTT
26332772 GAGTCTGAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
16 8 0.20
17 12 0.30
18 7 0.17
19 4 0.10
20 9 0.22
ACGTcount: A:0.06, C:0.00, G:0.11, T:0.82
Consensus pattern (17 bp):
TTTGTTTTTTTTGATTT
Found at i:26332770 original size:29 final size:29
Alignment explanation
Indices: 26332710--26332769 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
26332700 AATTTTTGAC
26332710 TTTGATTTTTTTGATTTTTTTTGATTTTT
1 TTTGATTTTTTTGATTTTTTTTGATTTTT
*
26332739 TTTGA-TTTTTTG-TTTTTTTTGTTTGTTT
1 TTTGATTTTTTTGATTTTTTTTGATT-TTT
26332767 TTT
1 TTT
26332770 TTGAGTCTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 11 0.38
28 13 0.45
29 5 0.17
ACGTcount: A:0.07, C:0.00, G:0.12, T:0.82
Consensus pattern (29 bp):
TTTGATTTTTTTGATTTTTTTTGATTTTT
Found at i:26334835 original size:19 final size:17
Alignment explanation
Indices: 26334813--26334855 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 17
26334803 GTGAAATTTG
26334813 ATGCATGCAATGAAATGCA
1 ATGCATGC-ATGAAATG-A
26334832 ATGCAGATGCATGAAATGA
1 ATGC--ATGCATGAAATGA
26334851 ATGCA
1 ATGCA
26334856 AAAAAGAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.05
19 9 0.41
20 8 0.36
21 4 0.18
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (17 bp):
ATGCATGCATGAAATGA
Found at i:26336611 original size:100 final size:100
Alignment explanation
Indices: 26336438--26336637 Score: 400
Period size: 100 Copynumber: 2.0 Consensus size: 100
26336428 CTCAAAATAT
26336438 TAAACATTGAATATTGCATTTATTTCGAAAAATCCTCATCTCGAGAAAACAACGTGTCACATCCA
1 TAAACATTGAATATTGCATTTATTTCGAAAAATCCTCATCTCGAGAAAACAACGTGTCACATCCA
26336503 ATGCGTTAGGATACAATGTATTGAATTCTCGATAA
66 ATGCGTTAGGATACAATGTATTGAATTCTCGATAA
26336538 TAAACATTGAATATTGCATTTATTTCGAAAAATCCTCATCTCGAGAAAACAACGTGTCACATCCA
1 TAAACATTGAATATTGCATTTATTTCGAAAAATCCTCATCTCGAGAAAACAACGTGTCACATCCA
26336603 ATGCGTTAGGATACAATGTATTGAATTCTCGATAA
66 ATGCGTTAGGATACAATGTATTGAATTCTCGATAA
26336638 CGAGGTTTTT
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (100 bp):
TAAACATTGAATATTGCATTTATTTCGAAAAATCCTCATCTCGAGAAAACAACGTGTCACATCCA
ATGCGTTAGGATACAATGTATTGAATTCTCGATAA
Found at i:26336823 original size:23 final size:22
Alignment explanation
Indices: 26336797--26336853 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
26336787 AGTAAAAATG
26336797 AATGCAAAATAATAAATGATGAC
1 AATGCAAAATAATAAATGAT-AC
*
26336820 AATG-TAAAT-A-AAATGATAC
1 AATGCAAAATAATAAATGATAC
*
26336839 AA-GCAAAACAATAAA
1 AATGCAAAATAATAAA
26336854 CAATAAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 8 0.29
21 4 0.14
22 4 0.14
23 4 0.14
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.19
Consensus pattern (22 bp):
AATGCAAAATAATAAATGATAC
Found at i:26337474 original size:18 final size:18
Alignment explanation
Indices: 26337385--26337474 Score: 69
Period size: 18 Copynumber: 5.1 Consensus size: 18
26337375 ACAACAACAA
*
26337385 TAATAATAATAATAATAG
1 TAATAATAATAATAATAT
*
26337403 TAATAA-AGATAATAATAC
1 TAATAATA-ATAATAATAT
** * * *
26337421 T-ATAGCAATGATGACAT
1 TAATAATAATAATAATAT
*
26337438 TAATAATAATAATACTAT
1 TAATAATAATAATAATAT
26337456 TAATAAT-ATAAATAATAT
1 TAATAATAAT-AATAATAT
26337474 T
1 T
26337475 GCTGCTAATA
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
17 13 0.24
18 42 0.76
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (18 bp):
TAATAATAATAATAATAT
Found at i:26337488 original size:3 final size:3
Alignment explanation
Indices: 26337383--26337472 Score: 51
Period size: 3 Copynumber: 30.3 Consensus size: 3
26337373 CAACAACAAC
* * **
26337383 AAT AAT AAT AAT AAT AAT AGT AAT AA- AGAT AAT AAT ACT -AT AGC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* * * * * *
26337427 AAT GAT GAC ATT AAT AAT AAT AAT ACT ATT AAT AAT -AT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
26337472 A
1 A
26337473 TTGCTGCTAA
Statistics
Matches: 65, Mismatches: 17, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
2 4 0.06
3 58 0.89
4 3 0.05
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26338570 original size:27 final size:28
Alignment explanation
Indices: 26338520--26338576 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
26338510 TAGTTTTGGG
*
26338520 TTTGTTGGGTATTTGGGCTTGGTT-TAA
1 TTTGTTGGGTACTTGGGCTTGGTTGTAA
*
26338547 TTTGTTGGGT-CTTGGGTTTGGGTTGTAA
1 TTTGTTGGGTACTTGGGCTT-GGTTGTAA
26338575 TT
1 TT
26338577 GGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.27
27 14 0.54
28 5 0.19
ACGTcount: A:0.09, C:0.04, G:0.35, T:0.53
Consensus pattern (28 bp):
TTTGTTGGGTACTTGGGCTTGGTTGTAA
Found at i:26344015 original size:142 final size:145
Alignment explanation
Indices: 26343755--26344045 Score: 462
Period size: 142 Copynumber: 2.0 Consensus size: 145
26343745 TTGATTTTTT
26343755 TTTAAAAAAAAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAA
1 TTTAAAAAAAAGAAAGTTTAGATTTTGAAAAATAAAAATA-GTTTTTTAGTCATTTTAAAGGAAA
*** * *
26343820 AGTTTAATTTTTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATTT
65 AGTTTAATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTT
*
26343885 TTAATAAAAATAGTGA
130 TTAAGAAAAATAGTGA
* * *
26343901 TTTAAAAAAAATAATGTTTAGATTTTTAAAAATAAAAATA-TTTTTTAGTCATTTTAAAGGAAAA
1 TTTAAAAAAAAGAAAGTTTAGATTTTGAAAAATAAAAATAGTTTTTTAGTCATTTTAAAGGAAAA
26343965 G-TTAA-AAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTT
66 GTTTAATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTT
*
26344028 TAAGAAAAGTAGTGA
131 TAAGAAAAATAGTGA
26344043 TTT
1 TTT
26344046 TTTTTTAAAG
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
142 69 0.51
143 4 0.03
144 25 0.19
146 37 0.27
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.42
Consensus pattern (145 bp):
TTTAAAAAAAAGAAAGTTTAGATTTTGAAAAATAAAAATAGTTTTTTAGTCATTTTAAAGGAAAA
GTTTAATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTT
TAAGAAAAATAGTGA
Found at i:26344080 original size:142 final size:142
Alignment explanation
Indices: 26343761--26344082 Score: 416
Period size: 142 Copynumber: 2.2 Consensus size: 142
26343751 TTTTTTTAAA
* *
26343761 AAAAAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAAGTTTA
1 AAAAAGAAAATTTTGATTTTGAAAAATAAAAATA-GTTTTTTAGTCATTTTAAAGGAAAAGTTTA
*** * * *
26343826 ATTTTTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATTTTTAATA
65 ATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTTTAAGA
26343891 AAAATAGTGATTT
130 AAAATAGTGATTT
* *
26343904 AAAAAAAATAATGTTTAGATTTTTAAAAATAAAAATA-TTTTTTAGTCATTTTAAAGGAAAAG-T
1 AAAAAGAA-AAT-TTT-GATTTTGAAAAATAAAAATAGTTTTTTAGTCATTTTAAAGGAAAAGTT
26343967 TAA-AAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTTTAA
63 TAATAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTTTAA
*
26344031 GAAAAGTAGTGATTTTTTT
128 GAAAAATAGTGA----TTT
** *
26344050 TTAAAGAAAATTTTGATTTTGCAAAAAAAAAAA
1 AAAAAGAAAATTTTGATTTTG-AAAAATAAAAA
26344083 ACTTCCGGCC
Statistics
Matches: 155, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
142 66 0.43
143 17 0.11
144 40 0.26
145 5 0.03
146 27 0.17
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.41
Consensus pattern (142 bp):
AAAAAGAAAATTTTGATTTTGAAAAATAAAAATAGTTTTTTAGTCATTTTAAAGGAAAAGTTTAA
TAAATTTTAAAACAAAGTTTTAATCTTTTTCAACTATTTCGAAATAAAGCTTTGATTTTTAAGAA
AAATAGTGATTT
Found at i:26348639 original size:15 final size:15
Alignment explanation
Indices: 26348619--26348647 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26348609 GTATTGTTGC
26348619 TTGATAACACGATGA
1 TTGATAACACGATGA
26348634 TTGATAACACGATG
1 TTGATAACACGATG
26348648 TGTAAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (15 bp):
TTGATAACACGATGA
Found at i:26371357 original size:94 final size:95
Alignment explanation
Indices: 26371259--26371462 Score: 257
Period size: 95 Copynumber: 2.2 Consensus size: 95
26371249 ATAGCCGAGC
* * * * * *
26371259 TATGGTCTTACACAATATAAC-CTATGTTTAATGTCCTTGCAGGCTACCCCGTGTTTATTGTCCC
1 TATGGTCTTACACAATATAACTCCATGTTTAATGTCCTGGAAGACTACCCCATGCTTATTGTCCC
* * *
26371323 AACAGACTCCATATGTTGCCGTAATCAAGA
66 AACAGACTCCATATGCTACCATAATCAAGA
*
26371353 TATGGTCTTACACAATATAACTCCATGTTTAATGTCCTGGAAGACTATCCCATGCTTATTGTCCC
1 TATGGTCTTACACAATATAACTCCATGTTTAATGTCCTGGAAGACTACCCCATGCTTATTGTCCC
* ** * * *
26371418 GATGGACTTCATATGCTACCATAATCGAGC
66 AACAGACTCCATATGCTACCATAATCAAGA
26371448 TATGGTCTTACACAA
1 TATGGTCTTACACAA
26371463 ACCCCATGTT
Statistics
Matches: 93, Mismatches: 16, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
94 21 0.23
95 72 0.77
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (95 bp):
TATGGTCTTACACAATATAACTCCATGTTTAATGTCCTGGAAGACTACCCCATGCTTATTGTCCC
AACAGACTCCATATGCTACCATAATCAAGA
Found at i:26371431 original size:95 final size:94
Alignment explanation
Indices: 26371183--26371483 Score: 261
Period size: 94 Copynumber: 3.2 Consensus size: 94
26371173 TTACAACGTA
** * * * * * *
26371183 AACCCATGTTTAACATCCTGGAAAACTTCCCCGT-CTTTATTGTCCCGAA-AAAATTCATATGCT
1 AACCCATGTTTAATGTCCTGGAAGACTACCCCATGC-TTATTGTCCC-AACAGACTCCATATGCT
* ** * *
26371246 GCCATAGCCGAGCTATGGTCTTACACAATAT
64 ACCATAATCAAGATATGGTCTTACACAATAT
* * * * * * * *
26371277 AACCTATGTTTAATGTCCTTGCAGGCTACCCCGTGTTTATTGTCCCAACAGACTCCATATGTTGC
1 AACCCATGTTTAATGTCCTGGAAGACTACCCCATGCTTATTGTCCCAACAGACTCCATATGCTAC
*
26371342 CGTAATCAAGATATGGTCTTACACAATAT
66 CATAATCAAGATATGGTCTTACACAATAT
* * ** *
26371371 AACTCCATGTTTAATGTCCTGGAAGACTATCCCATGCTTATTGTCCCGATGGACTTCATATGCTA
1 AAC-CCATGTTTAATGTCCTGGAAGACTACCCCATGCTTATTGTCCCAACAGACTCCATATGCTA
* *
26371436 CCATAATCGAGCTATGGTCTTACAC-A-A-
65 CCATAATCAAGATATGGTCTTACACAATAT
* *
26371463 ACCCCATGTTTAAAGTCCTGG
1 AACCCATGTTTAATGTCCTGG
26371484 CTAACTTTGT
Statistics
Matches: 168, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
91 17 0.10
92 2 0.01
93 3 0.02
94 76 0.45
95 70 0.42
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (94 bp):
AACCCATGTTTAATGTCCTGGAAGACTACCCCATGCTTATTGTCCCAACAGACTCCATATGCTAC
CATAATCAAGATATGGTCTTACACAATAT
Found at i:26381199 original size:31 final size:29
Alignment explanation
Indices: 26381162--26381229 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 29
26381152 TAAAATTTGC
*
26381162 TATTAAAATAA-AATTTAAATATTAAATAATT
1 TATTAAAATAATAAATT--ATATT-AATAATT
26381193 TATTAAAAATAATAAATTATATTAATAATT
1 TATT-AAAATAATAAATTATATTAATAATT
26381223 TATTAAA
1 TATTAAA
26381230 TACCTATGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
29 3 0.09
30 11 0.32
31 9 0.26
32 7 0.21
33 4 0.12
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
TATTAAAATAATAAATTATATTAATAATT
Found at i:26385080 original size:22 final size:22
Alignment explanation
Indices: 26385049--26385119 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
26385039 TGCAAACACA
* *
26385049 ATAAAAGTATTGTGTGAACCAT
1 ATAAATGTATTGTGCGAACCAT
*
26385071 ATAAATGTATTGTGCGAACCCT
1 ATAAATGTATTGTGCGAACCAT
*
26385093 ATAAATGTATTGTACGAACTC-T
1 ATAAATGTATTGTGCGAAC-CAT
26385115 ATAAA
1 ATAAA
26385120 AGTGAGTGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 43 0.98
23 1 0.02
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (22 bp):
ATAAATGTATTGTGCGAACCAT
Found at i:26385144 original size:16 final size:16
Alignment explanation
Indices: 26385119--26385149 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26385109 AACTCTATAA
26385119 AAGTGAGTGACCTTAT
1 AAGTGAGTGACCTTAT
*
26385135 AAGTGTGTGACCTTA
1 AAGTGAGTGACCTTA
26385150 GATATGTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (16 bp):
AAGTGAGTGACCTTAT
Found at i:26385285 original size:19 final size:19
Alignment explanation
Indices: 26385261--26385297 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26385251 GTTTTATGCG
26385261 AGCTTAAATATTTCATGTA
1 AGCTTAAATATTTCATGTA
* *
26385280 AGCTTAACTATTTTATGT
1 AGCTTAAATATTTCATGT
26385298 GAGCCGAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (19 bp):
AGCTTAAATATTTCATGTA
Found at i:26385328 original size:19 final size:19
Alignment explanation
Indices: 26385304--26385343 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26385294 ATGTGAGCCG
*
26385304 AATGTTTTATACAATCTTA
1 AATGTTTTATACAAGCTTA
*
26385323 AATGTTTTATGCAAGCTTA
1 AATGTTTTATACAAGCTTA
26385342 AA
1 AA
26385344 ACTACTATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (19 bp):
AATGTTTTATACAAGCTTA
Found at i:26387962 original size:17 final size:17
Alignment explanation
Indices: 26387940--26387978 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26387930 ATTGAAAACC
*
26387940 CTTCTTGAAATTTCAAA
1 CTTCTTGAAATTTAAAA
**
26387957 CTTCTTGCCATTTAAAA
1 CTTCTTGAAATTTAAAA
26387974 CTTCT
1 CTTCT
26387979 ATAAAACCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (17 bp):
CTTCTTGAAATTTAAAA
Found at i:26388522 original size:28 final size:28
Alignment explanation
Indices: 26388457--26388522 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
26388447 CTATTTAGTA
* *
26388457 ACAGTAT-AGTGTGGGCTTTAGCCCAAT
1 ACAGTATCAGTGTGGGCCTAAGCCCAAT
** * *
26388484 ACAAAAACAGTGTGGGCCTAAGCCCGAT
1 ACAGTATCAGTGTGGGCCTAAGCCCAAT
26388512 ACAGTATCAGT
1 ACAGTATCAGT
26388523 ATGGTGCAAG
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
27 4 0.14
28 25 0.86
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (28 bp):
ACAGTATCAGTGTGGGCCTAAGCCCAAT
Found at i:26388821 original size:32 final size:31
Alignment explanation
Indices: 26388733--26389091 Score: 369
Period size: 32 Copynumber: 11.4 Consensus size: 31
26388723 CAGAATGGCT
* * *
26388733 ACAAGCCATAAGT-ACAGTAATATGATTGGC
1 ACAAGCCATCAGTAACGGTAATATGATCGGC
* * ** *
26388763 ACAAGCCATCAATAGCAATGATATGATCGGC
1 ACAAGCCATCAGTAACGGTAATATGATCGGC
* * *
26388794 ACACAACCATCAGTAATGGTAACATGATCGGC
1 ACA-AGCCATCAGTAACGGTAATATGATCGGC
*** * *
26388826 ACAAAGCCATCAGTAGTAGTGATATGATCGGT
1 AC-AAGCCATCAGTAACGGTAATATGATCGGC
26388858 ACACAGCCATCAGTAACGGTAATATGATCGGC
1 ACA-AGCCATCAGTAACGGTAATATGATCGGC
* * * * *
26388890 ACAAGCCATTAGTAGCAGTGATATGATCAGC
1 ACAAGCCATCAGTAACGGTAATATGATCGGC
26388921 ACACAGCCATCAGTAACGGTAATATGATCGGC
1 ACA-AGCCATCAGTAACGGTAATATGATCGGC
* * * * *
26388953 ACAAGCCATTAGTAGCAGTGATATGATCAGC
1 ACAAGCCATCAGTAACGGTAATATGATCGGC
26388984 ACACAGCCATCAGTAACGGTAATATGATCGGC
1 ACA-AGCCATCAGTAACGGTAATATGATCGGC
* * * * *
26389016 ACAAGCCATTAGTAGCAGTGATATGATCAGC
1 ACAAGCCATCAGTAACGGTAATATGATCGGC
26389047 ACACAGCCATCAGTAACGGTAATATGATCGGC
1 ACA-AGCCATCAGTAACGGTAATATGATCGGC
26389079 ACAAAGCCATCAG
1 AC-AAGCCATCAG
26389092 CAGCATTGCA
Statistics
Matches: 266, Mismatches: 55, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
30 11 0.04
31 95 0.36
32 158 0.59
33 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (31 bp):
ACAAGCCATCAGTAACGGTAATATGATCGGC
Found at i:26388926 original size:63 final size:63
Alignment explanation
Indices: 26388736--26389088 Score: 555
Period size: 63 Copynumber: 5.6 Consensus size: 63
26388726 AATGGCTACA
* * * * * * *
26388736 AGCCATAAGT-ACAGTAATATGATTGGCACAAGCCATCAATAGCAATGATATGATCGGCACAC
1 AGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGCAGTGATATGATCAGCACAC
* * * * * * *
26388798 AACCATCAGTAATGGTAACATGATCGGCACAAAGCCATCAGTAGTAGTGATATGATCGGTACAC
1 AGCCATCAGTAACGGTAATATGATCGGCAC-AAGCCATTAGTAGCAGTGATATGATCAGCACAC
26388862 AGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGCAGTGATATGATCAGCACAC
1 AGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGCAGTGATATGATCAGCACAC
26388925 AGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGCAGTGATATGATCAGCACAC
1 AGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGCAGTGATATGATCAGCACAC
26388988 AGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGCAGTGATATGATCAGCACAC
1 AGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGCAGTGATATGATCAGCACAC
26389051 AGCCATCAGTAACGGTAATATGATCGGCACAAAGCCAT
1 AGCCATCAGTAACGGTAATATGATCGGCAC-AAGCCAT
26389089 CAGCAGCATT
Statistics
Matches: 271, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
62 8 0.03
63 200 0.74
64 63 0.23
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (63 bp):
AGCCATCAGTAACGGTAATATGATCGGCACAAGCCATTAGTAGCAGTGATATGATCAGCACAC
Found at i:26389306 original size:23 final size:23
Alignment explanation
Indices: 26389280--26389350 Score: 106
Period size: 23 Copynumber: 3.0 Consensus size: 23
26389270 AGTCATACAA
26389280 ATCACAAACAAATCAATCATTTG
1 ATCACAAACAAATCAATCATTTG
* *
26389303 ATCACAGACAAATCAATCATTTAA
1 ATCACAAACAAATCAATCATTT-G
*
26389327 ATCACAAACAAATCAGTCATTTG
1 ATCACAAACAAATCAATCATTTG
26389350 A
1 A
26389351 ATTATATACA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 22 0.52
24 20 0.48
ACGTcount: A:0.48, C:0.21, G:0.06, T:0.25
Consensus pattern (23 bp):
ATCACAAACAAATCAATCATTTG
Found at i:26389337 original size:24 final size:24
Alignment explanation
Indices: 26389278--26389403 Score: 110
Period size: 24 Copynumber: 5.2 Consensus size: 24
26389268 TTAGTCATAC
26389278 AAATCACAAACAAATCAATCATTT
1 AAATCACAAACAAATCAATCATTT
* *
26389302 -GATCACAGACAAATCAATCATTT
1 AAATCACAAACAAATCAATCATTT
*
26389325 AAATCACAAACAAATCAGTCATTT
1 AAATCACAAACAAATCAATCATTT
* * * * * * *
26389349 GAATTATATACAATTTAGTCATTT
1 AAATCACAAACAAATCAATCATTT
** * *
26389373 AAATCACGGATAGATCAATCATTT
1 AAATCACAAACAAATCAATCATTT
26389397 AACATCA
1 AA-ATCA
26389404 AGGGAAAAAA
Statistics
Matches: 79, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
23 21 0.27
24 54 0.68
25 4 0.05
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.29
Consensus pattern (24 bp):
AAATCACAAACAAATCAATCATTT
Found at i:26389481 original size:27 final size:27
Alignment explanation
Indices: 26389445--26389608 Score: 199
Period size: 27 Copynumber: 6.1 Consensus size: 27
26389435 CATTACGGTC
* * *
26389445 ATTTTA-CCTTAC-AGGGTATTTTGGTG
1 ATTTTACCCTT-CGAGGGTATTTCGATA
*
26389471 ATTTTACCCTTCGGGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
26389498 ATTTTACCCTTCGAGGGAATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
26389525 ATTTTACCCTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
26389552 ATTTTACCCTTCAAAGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* *
26389579 ATTTTACCCTTTGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
26389606 ATT
1 ATT
26389609 AGCCCACGAA
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
26 8 0.07
27 111 0.93
28 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:26401736 original size:22 final size:22
Alignment explanation
Indices: 26401711--26401758 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
26401701 TTACATTTTT
26401711 TATATCTTATA-ATTTATATACA
1 TATATC-TATACATTTATATACA
26401733 TATATCTATACATTTATATACA
1 TATATCTATACATTTATATACA
26401755 TATA
1 TATA
26401759 CGTTATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (22 bp):
TATATCTATACATTTATATACA
Found at i:26406730 original size:7 final size:7
Alignment explanation
Indices: 26406715--26406755 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
26406705 TCAAGTAATT
*
26406715 CATTGAA
1 CATTTAA
26406722 CATTTAA
1 CATTTAA
26406729 CATTTAA
1 CATTTAA
26406736 CATTTAA
1 CATTTAA
26406743 CATTTAA
1 CATTTAA
26406750 CATTTA
1 CATTTA
26406756 CTAATATCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.41
Consensus pattern (7 bp):
CATTTAA
Found at i:26406918 original size:20 final size:20
Alignment explanation
Indices: 26406890--26406979 Score: 74
Period size: 20 Copynumber: 4.5 Consensus size: 20
26406880 ATAGATCCAT
26406890 AACAGGGGCATCGAAGTGCA
1 AACAGGGGCATCGAAGTGCA
* * *
26406910 TATAGGGGCA-CAAATGTGCA
1 AACAGGGGCATCGAA-GTGCA
* * *
26406930 AACAGGGGAACCGTAGTGCA
1 AACAGGGGCATCGAAGTGCA
* * *
26406950 AATAGAGACATCGAAGTGCA
1 AACAGGGGCATCGAAGTGCA
*
26406970 CACAGGGGCA
1 AACAGGGGCA
26406980 GAAAAGTGCA
Statistics
Matches: 50, Mismatches: 18, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
19 3 0.06
20 45 0.90
21 2 0.04
ACGTcount: A:0.37, C:0.19, G:0.32, T:0.12
Consensus pattern (20 bp):
AACAGGGGCATCGAAGTGCA
Found at i:26412302 original size:48 final size:48
Alignment explanation
Indices: 26412249--26412342 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
26412239 TCATAGTGAT
*
26412249 AACCATTTTAATCCATTTTGATCCTTGTGGAGACGATCTCACTTACTC
1 AACCATTTTAATCCATTCTGATCCTTGTGGAGACGATCTCACTTACTC
* *
26412297 AACCATTTTAATCCATTCTGATCCTTGTGGAGATGATCTCTCTTAC
1 AACCATTTTAATCCATTCTGATCCTTGTGGAGACGATCTCACTTAC
26412343 AACTTTATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (48 bp):
AACCATTTTAATCCATTCTGATCCTTGTGGAGACGATCTCACTTACTC
Found at i:26418344 original size:17 final size:17
Alignment explanation
Indices: 26418303--26418338 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26418293 AGGAAACTAC
26418303 AGACCAAATAATTCTAT
1 AGACCAAATAATTCTAT
26418320 AGACCAAATAATTCTAT
1 AGACCAAATAATTCTAT
26418337 AG
1 AG
26418339 TTCAAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (17 bp):
AGACCAAATAATTCTAT
Found at i:26422531 original size:12 final size:12
Alignment explanation
Indices: 26422514--26422538 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26422504 TTCTCTTGGC
26422514 TTGTTTTATTAT
1 TTGTTTTATTAT
26422526 TTGTTTTATTAT
1 TTGTTTTATTAT
26422538 T
1 T
26422539 CTTGAAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (12 bp):
TTGTTTTATTAT
Found at i:26434608 original size:40 final size:40
Alignment explanation
Indices: 26434493--26434618 Score: 171
Period size: 40 Copynumber: 3.1 Consensus size: 40
26434483 CAAAGCCTAT
*
26434493 TAGGCATTAAGCCCGATAATTACACCAGCATAAAGCCTGC
1 TAGGCATTAAGCCCGATAATTACACCAGCATGAAGCCTGC
* * * *
26434533 TAGGCATTAAGCCTGATAATTACACCAGCGTGAAGCGTGT
1 TAGGCATTAAGCCCGATAATTACACCAGCATGAAGCCTGC
* ** *
26434573 TAGGCATTAAGCCCAATAATTACACTGGCACGAAGCCTGC
1 TAGGCATTAAGCCCGATAATTACACCAGCATGAAGCCTGC
26434613 TAGGCA
1 TAGGCA
26434619 CAAGGTCCGA
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (40 bp):
TAGGCATTAAGCCCGATAATTACACCAGCATGAAGCCTGC
Found at i:26438968 original size:50 final size:50
Alignment explanation
Indices: 26438844--26439090 Score: 228
Period size: 50 Copynumber: 4.8 Consensus size: 50
26438834 GATAATAACA
* * * ** * *
26438844 TGCCAAGGCCATGTCTCAGACATGGTATTACATGGGATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * **
26438893 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** *
26438943 TGCCTATGCGATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
26438993 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
26439049 TGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26439091 TTATCCAAAT
Statistics
Matches: 160, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
50 80 0.50
53 2 0.01
56 40 0.25
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26444538 original size:252 final size:252
Alignment explanation
Indices: 26444093--26444567 Score: 932
Period size: 252 Copynumber: 1.9 Consensus size: 252
26444083 TGATAATAAC
26444093 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCTACCCAAATGTCATGACATTT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCTACCCAAATGTCATGACATTT
26444158 GTATCCAATACATTCCTAATGTTTCAACGGGGCTTGTATCACTAATTTTCTGTCATCTCATACTT
66 GTATCCAATACATTCCTAATGTTTCAACGGGGCTTGTATCACTAATTTTCTGTCATCTCATACTT
26444223 GAGTCAACATTATATATTTTCATAAAATAAATACATAACTGCTGAAAAATAACAACATTAATAAT
131 GAGTCAACATTATATATTTTCATAAAATAAATACATAACTGCTGAAAAATAACAACATTAATAAT
26444288 AATTATTGAAATATTTCATTTATTTACCCTTACATGGGACCTCTCATAATCTCAATG
196 AATTATTGAAATATTTCATTTATTTACCCTTACATGGGACCTCTCATAATCTCAATG
* *
26444345 ATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCTCTACCCAAATGTCATGACATTT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCTACCCAAATGTCATGACATTT
26444410 GTATCCAATACATTCCTAATGTTTCAACGGGGCTTGTATCACTAATTTTCTGTCATCTCATACTT
66 GTATCCAATACATTCCTAATGTTTCAACGGGGCTTGTATCACTAATTTTCTGTCATCTCATACTT
26444475 GAGTCAACATTATATATTTTCATAAAATAAATACATAACTGCTGAAAAATAACAACATTAATAAT
131 GAGTCAACATTATATATTTTCATAAAATAAATACATAACTGCTGAAAAATAACAACATTAATAAT
26444540 AATTATTGAAATATTTCATTTATTTACC
196 AATTATTGAAATATTTCATTTATTTACC
26444568 GTAAACTTAC
Statistics
Matches: 221, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
252 221 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (252 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCTACCCAAATGTCATGACATTT
GTATCCAATACATTCCTAATGTTTCAACGGGGCTTGTATCACTAATTTTCTGTCATCTCATACTT
GAGTCAACATTATATATTTTCATAAAATAAATACATAACTGCTGAAAAATAACAACATTAATAAT
AATTATTGAAATATTTCATTTATTTACCCTTACATGGGACCTCTCATAATCTCAATG
Found at i:26447444 original size:18 final size:18
Alignment explanation
Indices: 26447421--26447458 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26447411 CAACAACAAT
*
26447421 AAATAAATAAA-TATGTAC
1 AAAT-AATAAAGTATATAC
26447439 AAATAATAAAGTATATAC
1 AAATAATAAAGTATATAC
26447457 AA
1 AA
26447459 TCTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.26
Consensus pattern (18 bp):
AAATAATAAAGTATATAC
Found at i:26447505 original size:19 final size:19
Alignment explanation
Indices: 26447479--26447522 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26447469 GAGTATATAT
26447479 AAAAATAAAGAAATAATAA
1 AAAAATAAAGAAATAATAA
* * *
26447498 ACAAATAAATAGATAATAA
1 AAAAATAAAGAAATAATAA
26447517 AAAAAT
1 AAAAAT
26447523 TTGTAAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (19 bp):
AAAAATAAAGAAATAATAA
Found at i:26449344 original size:143 final size:143
Alignment explanation
Indices: 26449081--26450235 Score: 1432
Period size: 143 Copynumber: 8.1 Consensus size: 143
26449071 TAATGCCAAA
* * * * ** * **
26449081 GAAATAAGACTCACTGTTTTTAGTCTGCTCCGCTGCAACTTCAAAGAGATACGATTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
** * * * * *
26449146 AATCTATTCCGCTGTAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGGTTTAATTTGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
26449211 CTGCAACGCCAGG
131 CTGCAACGCCAGG
* * *
26449224 GAAATAGGATTCGTTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * * * *
26449289 AATCTGATCCACTGCAACTTTAAGAAGATAAGATCTTCCATAATTTTTAGTTTTAATATGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
* ** * *
26449354 TTGTGATGCCAAG
131 CTGCAACGCCAGG
* * * * * *
26449367 GAAATAAGATTCGCTATCTTCAGTCTGCTCCGATGTAACTTCAGGGAGGTAAAGCTAGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* *
26449432 AATCTGCTCCACTGTAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTATTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
*
26449497 CTGCAATGCCAGG
131 CTGCAACGCCAGG
* * * *
26449510 GAAATAAGATTCGTTGTCTTCAGTCTGCTTCGCTGCAACTTCAGAGAGATAAGGCTGGTGGCTTT
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * * *
26449575 AATCTTCTCCACTGCAACTTCAAGAAGATAAGACCTGCCATAACTTGTAGCTTTAACCAGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
**
26449640 CTGCAACGCCACA
131 CTGCAACGCCAGG
* * * *
26449653 GAAATAAGATTTGCTGTCTTCAGTCTACTCTGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * * * *
26449718 AATTTGCTCCACTGAAACTTCAGGAAGGTAAGATCCGCCATAGTTTGTAGCTTTAATCTGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
* *
26449783 CTGTAATGCCAGG
131 CTGCAACGCCAGG
* * * * * * *
26449796 GAAAAAAGATTCGCTATCTTCAGTTTGCTTCGCTACAACTTTAGGGAGATAAGGTTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * **
26449861 AATCTGCTCCACTACAACTTCAGGAAGATAAAATCCACCATAATTTGTAGCTTTAATCTGTTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
* *
26449926 CTACAACACCAGG
131 CTGCAACGCCAGG
*
26449939 GAAATAAGATTCGCTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGA-ATAAGGCTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * * *
26450003 AATATGCTCCACTGCGACTTCAAAAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGCTCCA
66 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
* * *
26450068 CTACAATGTCAGG
131 CTGCAACGCCAGG
* * * * * *
26450081 TAAATAAGATTCGCTGTCTTCTGTCTGTTCTGCTGTAACTTTAGGGAGATAAGGCTGGTGGCTTC
1 GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* *
26450146 AATCTGCTCCACTGCAACTT-TAGCAAGATAAGATCTGCCATAATTTGTAGCTTGAATCTGTTCC
66 AATCTGCTCCACTGCAACTTCAAG-AAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCC
* *
26450210 ACTACAACACCAGG
130 ACTGCAACGCCAGG
26450224 GAAATAAGATTC
1 GAAATAAGATTC
26450236 ACTATAATGA
Statistics
Matches: 864, Mismatches: 146, Indels: 4
0.85 0.14 0.00
Matches are distributed among these distances:
142 124 0.14
143 740 0.86
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (143 bp):
GAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCA
CTGCAACGCCAGG
Found at i:26462922 original size:20 final size:20
Alignment explanation
Indices: 26462897--26462944 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26462887 ATGTTTTAAT
*
26462897 TTAAGACATACTTAATAAAA
1 TTAAGACACACTTAATAAAA
* **
26462917 TTAAGACACATTTAATTTAA
1 TTAAGACACACTTAATAAAA
26462937 TTAAGACA
1 TTAAGACA
26462945 AGACAAGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.33
Consensus pattern (20 bp):
TTAAGACACACTTAATAAAA
Found at i:26464098 original size:29 final size:29
Alignment explanation
Indices: 26464066--26464189 Score: 115
Period size: 29 Copynumber: 4.3 Consensus size: 29
26464056 GGTTGTCACC
* **
26464066 ATCCCTTTTCATAATTGATAGTTGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
*
26464095 ATCCCTTTTCATAATCGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * * * * *
26464124 ATTCCTTTTCATATTCAATGGTCGTCATC-
1 ATCCCTTTTCATAATCGATAGCCG-AAGCT
* *
26464153 ATCCCTTTTCATAGTCGATAGCTGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
26464182 ATCCCTTT
1 ATCCCTTT
26464190 CCATTGGTTG
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
28 2 0.03
29 69 0.95
30 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:26464281 original size:12 final size:12
Alignment explanation
Indices: 26464264--26464293 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
26464254 AAATGATAAC
26464264 ATTTAAAACAGT
1 ATTTAAAACAGT
26464276 ATTTAAAACAGT
1 ATTTAAAACAGT
26464288 ATTTAA
1 ATTTAA
26464294 TGTACGAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (12 bp):
ATTTAAAACAGT
Found at i:26465777 original size:14 final size:14
Alignment explanation
Indices: 26465758--26465784 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26465748 ACATGAATAT
26465758 AAAAACCTCACAAC
1 AAAAACCTCACAAC
26465772 AAAAACCTCACAA
1 AAAAACCTCACAA
26465785 ATCTCTCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.33, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAAACCTCACAAC
Found at i:26466132 original size:19 final size:19
Alignment explanation
Indices: 26466108--26466157 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
26466098 AACAAAACAC
26466108 TTTTTTTTAATTCACAAT-T
1 TTTTTTTTAATTCAC-ATCT
* *
26466127 TTTTTTTCAATTCACTTCT
1 TTTTTTTTAATTCACATCT
26466146 TTTTTTTTAATT
1 TTTTTTTTAATT
26466158 TCGTAAGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 26 0.96
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTTTTAATTCACATCT
Found at i:26467494 original size:20 final size:20
Alignment explanation
Indices: 26467469--26467516 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26467459 ATGTTTTAAT
*
26467469 TTAAGACATACTTAATAAAA
1 TTAAGACACACTTAATAAAA
* **
26467489 TTAAGACACATTTAATTTAA
1 TTAAGACACACTTAATAAAA
26467509 TTAAGACA
1 TTAAGACA
26467517 AGACAAGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.33
Consensus pattern (20 bp):
TTAAGACACACTTAATAAAA
Found at i:26469986 original size:15 final size:15
Alignment explanation
Indices: 26469968--26469998 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26469958 TATAAATGTC
26469968 ACAATAACAAATACA
1 ACAATAACAAATACA
*
26469983 ACAATAATAAATACA
1 ACAATAACAAATACA
26469998 A
1 A
26469999 TAATGGCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (15 bp):
ACAATAACAAATACA
Found at i:26470028 original size:13 final size:14
Alignment explanation
Indices: 26470009--26470046 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
26469999 TAATGGCATA
26470009 GAAATAATATAAAC
1 GAAATAATATAAAC
26470023 -AAATAA-ATAAAC
1 GAAATAATATAAAC
26470035 GAAACTAATATA
1 GAAA-TAATATA
26470047 CATGAGGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:26471243 original size:4 final size:4
Alignment explanation
Indices: 26471234--26471268 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
26471224 TTTTAAGTAA
*
26471234 AAAT AAAT AAAT AAAC AAAT AAAT AAAT AAA- AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
26471269 GGCGAAAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:26471255 original size:16 final size:15
Alignment explanation
Indices: 26471232--26471268 Score: 65
Period size: 16 Copynumber: 2.4 Consensus size: 15
26471222 TATTTTAAGT
26471232 AAAAATAAATAAATA
1 AAAAATAAATAAATA
26471247 AACAAATAAATAAATA
1 AA-AAATAAATAAATA
26471263 AAAAAT
1 AAAAAT
26471269 GGCGAAAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAAATAAATAAATA
Found at i:26473687 original size:14 final size:14
Alignment explanation
Indices: 26473670--26473716 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
26473660 ATTTTATATG
26473670 TTTATATGTTATTT
1 TTTATATGTTATTT
* * *
26473684 TTTATTAT-TAAATG
1 TTTA-TATGTTATTT
26473698 TTTATATGTTATTT
1 TTTATATGTTATTT
26473712 TTTAT
1 TTTAT
26473717 TATTAAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
13 3 0.12
14 19 0.76
15 3 0.12
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (14 bp):
TTTATATGTTATTT
Found at i:26473698 original size:28 final size:28
Alignment explanation
Indices: 26473667--26473723 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
26473657 TTAATTTTAT
26473667 ATGTTTATATGTTATTTTTTATTATTAA
1 ATGTTTATATGTTATTTTTTATTATTAA
26473695 ATGTTTATATGTTATTTTTTATTATTAA
1 ATGTTTATATGTTATTTTTTATTATTAA
26473723 A
1 A
26473724 ATAAAGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (28 bp):
ATGTTTATATGTTATTTTTTATTATTAA
Found at i:26475354 original size:24 final size:24
Alignment explanation
Indices: 26475326--26475377 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
26475316 TTAGTAAGTC
* *
26475326 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
26475350 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
26475374 AAAT
1 AAAT
26475378 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:26489261 original size:10 final size:10
Alignment explanation
Indices: 26489240--26489292 Score: 56
Period size: 10 Copynumber: 5.2 Consensus size: 10
26489230 TAACTGAGTA
26489240 AATAAT-AAT
1 AATAATAAAT
26489249 AATAATAAAT
1 AATAATAAAT
26489259 AAT-ATGAAAT
1 AATAAT-AAAT
26489269 AATAATATAAT
1 AATAATA-AAT
*
26489280 AATGAATAGAT
1 AAT-AATAAAT
26489291 AA
1 AA
26489293 GTATAAAAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
9 8 0.21
10 14 0.37
11 12 0.32
12 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (10 bp):
AATAATAAAT
Found at i:26489261 original size:13 final size:12
Alignment explanation
Indices: 26489238--26489287 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 12
26489228 TATAACTGAG
26489238 TAAATAATAATA
1 TAAATAATAATA
26489250 -ATAATAAATAATA
1 TA-AAT-AATAATA
26489263 TGAAATAATAATA
1 T-AAATAATAATA
26489276 T-AATAATGAATA
1 TAAATAAT-AATA
26489288 GATAAGTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
11 7 0.21
12 7 0.21
13 15 0.45
14 3 0.09
15 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (12 bp):
TAAATAATAATA
Found at i:26493471 original size:40 final size:40
Alignment explanation
Indices: 26493427--26493577 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 40
26493417 TGGCACACCA
* * * *
26493427 GTGGATAAGCCACCAGTATTACATATAAACTGCCAGTAAT
1 GTGGATAAGCCACCAGTATTGCAGACAAGCTGCCAGTAAT
* * * * * *
26493467 GTGGACAAGCCACCAGAATTGTAGACAAGTTACCAATAAT
1 GTGGATAAGCCACCAGTATTGCAGACAAGCTGCCAGTAAT
** * *
26493507 GTTCAAAAGCCACCAGTGTTGCAGACAAGCTGCCAGTAAT
1 GTGGATAAGCCACCAGTATTGCAGACAAGCTGCCAGTAAT
* * * *
26493547 GTGGATAAACCACCAGTGTTGTACACAAGCT
1 GTGGATAAGCCACCAGTATTGCAGACAAGCT
26493578 ACCATTATTA
Statistics
Matches: 86, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (40 bp):
GTGGATAAGCCACCAGTATTGCAGACAAGCTGCCAGTAAT
Found at i:26493482 original size:20 final size:20
Alignment explanation
Indices: 26493459--26493563 Score: 59
Period size: 20 Copynumber: 5.2 Consensus size: 20
26493449 ATATAAACTG
*
26493459 CCAGTAATGTGGACAAGCCA
1 CCAGTAATGTAGACAAGCCA
**
26493479 CCAG-AATTGTAGACAAGTTA
1 CCAGTAA-TGTAGACAAGCCA
* ** *
26493499 CCAATAATGTTCAAAAGCCA
1 CCAGTAATGTAGACAAGCCA
** * **
26493519 CCAGTGTTGCAGACAAGCTG
1 CCAGTAATGTAGACAAGCCA
* * *
26493539 CCAGTAATGTGGATAAACCA
1 CCAGTAATGTAGACAAGCCA
26493559 CCAGT
1 CCAGT
26493564 GTTGTACACA
Statistics
Matches: 57, Mismatches: 26, Indels: 4
0.66 0.30 0.05
Matches are distributed among these distances:
19 2 0.04
20 53 0.93
21 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (20 bp):
CCAGTAATGTAGACAAGCCA
Found at i:26493569 original size:80 final size:80
Alignment explanation
Indices: 26493433--26493581 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
26493423 ACCAGTGGAT
* * * * *
26493433 AAGCCACCAGTATTACATATAAACTGCCAGTAATGTGGACAAGCCACCAGAATTGTAGACAAGTT
1 AAGCCACCAGTATTACAGACAAACTGCCAGTAATGTGGACAAACCACCAGAATTGTACACAAGCT
26493498 ACCAATAATGTTCAA
66 ACCAATAATGTTCAA
* * * * **
26493513 AAGCCACCAGTGTTGCAGACAAGCTGCCAGTAATGTGGATAAACCACCAGTGTTGTACACAAGCT
1 AAGCCACCAGTATTACAGACAAACTGCCAGTAATGTGGACAAACCACCAGAATTGTACACAAGCT
26493578 ACCA
66 ACCA
26493582 TTATTATAGA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 58 1.00
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (80 bp):
AAGCCACCAGTATTACAGACAAACTGCCAGTAATGTGGACAAACCACCAGAATTGTACACAAGCT
ACCAATAATGTTCAA
Found at i:26493594 original size:40 final size:40
Alignment explanation
Indices: 26493516--26493595 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
26493506 TGTTCAAAAG
* * * *
26493516 CCACCAGTGTTGCAGACAAGCTGCCAGTAATGTGGATAAA
1 CCACCAGTGTTGCACACAAGCTACCAGTAATATAGATAAA
* * *
26493556 CCACCAGTGTTGTACACAAGCTACCATTATTATAGATAAA
1 CCACCAGTGTTGCACACAAGCTACCAGTAATATAGATAAA
26493596 TTGCCAGTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (40 bp):
CCACCAGTGTTGCACACAAGCTACCAGTAATATAGATAAA
Found at i:26498401 original size:39 final size:35
Alignment explanation
Indices: 26498325--26498401 Score: 84
Period size: 39 Copynumber: 2.1 Consensus size: 35
26498315 TGAAAATATC
*
26498325 AAAAATAATAAAAGAAATAATAAAATAACGAGTACA
1 AAAAATAATAAAAGAAATAATAAAATAAC-AGCACA
26498361 AAAAATAATAATAACGACAATAATAATAATAA-ATGCACA
1 AAAAATAATAA-AA-GA-AATAATAA-AATAACA-GCACA
26498400 AA
1 AA
26498402 TAAAAGAGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
36 11 0.31
37 2 0.06
38 3 0.09
39 14 0.40
40 5 0.14
ACGTcount: A:0.68, C:0.08, G:0.06, T:0.18
Consensus pattern (35 bp):
AAAAATAATAAAAGAAATAATAAAATAACAGCACA
Found at i:26502119 original size:19 final size:20
Alignment explanation
Indices: 26502091--26502130 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
26502081 TTCTAAATTA
*
26502091 TTATCCACATGA-TTTAAAT
1 TTATCAACATGATTTTAAAT
*
26502110 TTATCAACATTATTTTAAAT
1 TTATCAACATGATTTTAAAT
26502130 T
1 T
26502131 CTTTTTACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (20 bp):
TTATCAACATGATTTTAAAT
Found at i:26506020 original size:19 final size:18
Alignment explanation
Indices: 26505996--26506043 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
26505986 GGATGCTCTT
*
26505996 TTTGCATTCATTTCATGCA
1 TTTGCATTCATGTCAT-CA
26506015 TTTGCATTACATGTCATCA
1 TTTGCATT-CATGTCATCA
26506034 TATT-CATTCA
1 T-TTGCATTCA
26506044 AGATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 2 0.08
19 15 0.58
20 9 0.35
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.46
Consensus pattern (18 bp):
TTTGCATTCATGTCATCA
Found at i:26514534 original size:44 final size:44
Alignment explanation
Indices: 26514486--26515127 Score: 236
Period size: 44 Copynumber: 14.7 Consensus size: 44
26514476 CTAGTACTGG
*
26514486 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAATGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATGGATCT
* * * * * *
26514530 TATCTCTCTGA-AGTTACAGTAGAGTAGA-TCACATCA-GG-TCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAATGGATCT
* ** * * *
26514571 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT-AATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAATGGATCT
* * *
26514615 TATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATGGATCT
* * * * *** *
26514659 TATCTCTCT-AAAGTTACAGTAGAGTAGA-TCGCATCA-GG-TCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAATGGATCT
* * ** ** * *
26514700 TATCTCTCTAAGATTACAGTGGAATAGACCGAAGAAT-TTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AATAAT-GGATCT
* * ** * * *
26514746 TATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGT-AATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAATGGATCT
* *
26514790 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATGGATCT
** * * *** * *
26514834 TATCTCTATGA-AGTTACAGTAGAGTAGA-TCGCATCA-GG-TCC
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAATGGATCT
** ** *
26514875 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAT--ATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--TAATGGATCT
* * ** *
26514921 TATCTCCCTGAGATTACA-TCGGAGCAAATT-GAA-GCTGGTAATCC
1 TATCTCCCTGAGATTACAGT-GGAGCAGATTAAAATAATGG--ATCT
* ** ** * *
26514965 TATCTCCATGAGATTACAGTGGAATAGACCGAAGAAT-TTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AATAAT-GGATCT
* * **
26515011 TATCTCCCTGAGATTACAGCGGAGCAGATT-GAA-GCTGGTAATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATGG--ATCT
*
26515055 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATCAA-GGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AATGGATCT
* * *
26515099 TATCTCTCTGA-AGTTACAGTAGAGTAGAT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGAT
26515128 CGCATCAGGT
Statistics
Matches: 431, Mismatches: 122, Indels: 90
0.67 0.19 0.14
Matches are distributed among these distances:
40 1 0.00
41 74 0.17
42 12 0.03
43 33 0.08
44 214 0.50
45 6 0.01
46 87 0.20
47 3 0.01
48 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATGGATCT
Found at i:26514673 original size:129 final size:129
Alignment explanation
Indices: 26514439--26514718 Score: 452
Period size: 129 Copynumber: 2.2 Consensus size: 129
26514429 ATAGAACAAA
* * * * **
26514439 TCTTATCTCCTTGAGATTATAGCGGAGTAGATTGAAGCTAGTACTGGTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* *
26514504 GTGGAGCGGATTAAAATAATGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACATCAGG
*
26514568 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
*
26514633 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACATCAGG
* *
26514697 TCTTATCTCTCTAAGATTACAG
1 TCTTATCTCCCTGAGATTACAG
26514719 TGGAATAGAC
Statistics
Matches: 139, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 139 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACATCAGG
Found at i:26514766 original size:175 final size:175
Alignment explanation
Indices: 26514563--26514987 Score: 733
Period size: 175 Copynumber: 2.4 Consensus size: 175
26514553 GTAGATCACA
* *
26514563 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGA
*
26514628 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCAT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTAGATCGCAT
* *
26514693 CAGGTCTTATCTCTCTAAGATTACAGTGGAATAGACCGAAGAATT
131 CAGGTCCTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATT
* *
26514738 TCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGA
*
26514803 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTATGAAGTTACAGTAGAGTAGATCGCAT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTAGATCGCAT
*
26514868 CAGGTCCTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATT
131 CAGGTCCTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATT
* * * *
26514913 TCATATCTTATCTCCCTGAGATTACATCGGAGCAAATTGAAGCTGGTAATCCTATCTCCATGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGA
26514978 TTACAGTGGA
66 TTACAGTGGA
26514988 ATAGACCGAA
Statistics
Matches: 236, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 236 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (175 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTAGATCGCAT
CAGGTCCTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATT
Found at i:26514810 original size:90 final size:90
Alignment explanation
Indices: 26514563--26515077 Score: 482
Period size: 90 Copynumber: 5.8 Consensus size: 90
26514553 GTAGATCACA
* * *
26514563 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGA
1 TCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
*** **
26514628 TTACAGTGGAGCGGA-TTAA-AA-T
66 TTACAGTGGAATAGACCGAAGAATT
** * ** * * * * * * * *
26514650 AAAGGATCTTATCTCTCTAA-AGTTACAGTAGAGTAGATCGCATC-AG--GTCTTATCTCTCTAA
1 TCA-GATCTTATCTCCCTAAGA-TTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGA
26514711 GATTACAGTGGAATAGACCGAAGAATT
64 GATTACAGTGGAATAGACCGAAGAATT
26514738 TCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
*** **
26514803 TTACAGTGGAGCGGA-TTAA-AA-T
66 TTACAGTGGAATAGACCGAAGAATT
** ** ** * * * * *
26514825 AAAGGATCTTATCTCTATGAAG-TTACAGTAGAGTAGATCGCATC-AG--GTCCTATCTCCCTGA
1 TCA-GATCTTATCTCCCT-AAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGA
26514886 GATTACAGTGGAATAGACCGAAGAATT
64 GATTACAGTGGAATAGACCGAAGAATT
* * * * * *
26514913 TCATATCTTATCTCCCTGAGATTACATCGGAGCAAATTGAAGCTGGTAATCCTATCTCCATGAGA
1 TCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
26514978 TTACAGTGGAATAGACCGAAGAATT
66 TTACAGTGGAATAGACCGAAGAATT
* * *
26515003 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTGGTAATCTTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
26515068 TTACAGTGGA
66 TTACAGTGGA
26515078 GCGGATTAAA
Statistics
Matches: 333, Mismatches: 77, Indels: 33
0.75 0.17 0.07
Matches are distributed among these distances:
85 52 0.16
86 6 0.02
87 68 0.20
88 67 0.20
89 5 0.02
90 135 0.41
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (90 bp):
TCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAATAGACCGAAGAATT
Found at i:26515015 original size:265 final size:265
Alignment explanation
Indices: 26514710--26515194 Score: 853
Period size: 265 Copynumber: 1.8 Consensus size: 265
26514700 TATCTCTCTA
26514710 AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
1 AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
26514775 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTC
66 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTC
* *
26514840 TATGAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCCTGAGATTACAGTGGAATAGACC
131 TATGAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCCTGAGATTACAATGGAATAAACC
* *
26514905 GAAGAATTTCATATCTTATCTCCCTGAGATTACATCGGAGCAAATTGAAGCTGGTAATCCTATCT
196 GAAGAATTACAGATCTTATCTCCCTGAGATTACATCGGAGCAAATTGAAGCTGGTAATCCTATCT
26514970 CCATG
261 CCATG
*
26514975 AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGAT
1 AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
* * *
26515040 TGAAGCTGGTAATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATCAAGGATCTTATCTC
66 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTC
* * * *
26515105 TCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTGTCTCCTTGAGATTACAATGGAATAAACC
131 TATGAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCCTGAGATTACAATGGAATAAACC
*
26515170 GAAGAATTACAGATCTTGTCTCCCT
196 GAAGAATTACAGATCTTATCTCCCT
26515195 AAATAGTAGC
Statistics
Matches: 207, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
265 207 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (265 bp):
AGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGAT
TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTC
TATGAAGTTACAGTAGAGTAGATCGCATCAGGTCCTATCTCCCTGAGATTACAATGGAATAAACC
GAAGAATTACAGATCTTATCTCCCTGAGATTACATCGGAGCAAATTGAAGCTGGTAATCCTATCT
CCATG
Found at i:26517817 original size:74 final size:73
Alignment explanation
Indices: 26517696--26517858 Score: 263
Period size: 74 Copynumber: 2.2 Consensus size: 73
26517686 TTAGACCATG
* *
26517696 CAATTTTAAAATGAAGCATTTAAGATTTCAAGATATTGGATCCTAACTTACTGGATATGCCTTTT
1 CAATTTTAAAATAAAGCATTTAAGATTTCAAGATATTGGATCCTAACTTACTGGATATGCCATTT
26517761 TGTTATCT
66 TGTTATCT
* *
26517769 ACAATTTTAAAATAAAGCATTTAAGATTTCAAGATGTTGGATCCTAACTTACTGGATATGTCATT
1 -CAATTTTAAAATAAAGCATTTAAGATTTCAAGATATTGGATCCTAACTTACTGGATATGCCATT
26517834 TTGTTATCT
65 TTGTTATCT
**
26517843 TGATTTTAAAATAAAG
1 CAATTTTAAAATAAAG
26517859 GCAATATTTG
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
73 14 0.17
74 69 0.83
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (73 bp):
CAATTTTAAAATAAAGCATTTAAGATTTCAAGATATTGGATCCTAACTTACTGGATATGCCATTT
TGTTATCT
Found at i:26518076 original size:71 final size:72
Alignment explanation
Indices: 26517965--26518108 Score: 254
Period size: 71 Copynumber: 2.0 Consensus size: 72
26517955 ACGTGTGATT
26517965 CTTTTTTAAAAAAAAAAGGGACGAATATAACTTCGAAGATTGAATTGTTGCACTCTAACTCACTG
1 CTTTTTTAAAAAAAAAAGGGACGAATATAACTTCGAAGATTGAATTGTTGCACTCTAACTCACTG
26518030 AGTGTGA
66 AGTGTGA
* * *
26518037 CTTTTTT-TAAAAAAAAGGGACGAATCTAATTTCGAAGATTGAATTGTTGCACTCTAACTCACTG
1 CTTTTTTAAAAAAAAAAGGGACGAATATAACTTCGAAGATTGAATTGTTGCACTCTAACTCACTG
26518101 AGTGTGA
66 AGTGTGA
26518108 C
1 C
26518109 GATTTATTTC
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 62 0.90
72 7 0.10
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (72 bp):
CTTTTTTAAAAAAAAAAGGGACGAATATAACTTCGAAGATTGAATTGTTGCACTCTAACTCACTG
AGTGTGA
Found at i:26521233 original size:19 final size:18
Alignment explanation
Indices: 26521209--26521256 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
26521199 GGATGCTCTT
*
26521209 TTTGCATTCATTTCATGCA
1 TTTGCATTCATGTCAT-CA
26521228 TTTGCATTACATGTCATCA
1 TTTGCATT-CATGTCATCA
26521247 TATT-CATTCA
1 T-TTGCATTCA
26521257 AGATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 2 0.08
19 15 0.58
20 9 0.35
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.46
Consensus pattern (18 bp):
TTTGCATTCATGTCATCA
Found at i:26522952 original size:44 final size:44
Alignment explanation
Indices: 26522804--26522969 Score: 163
Period size: 44 Copynumber: 3.7 Consensus size: 44
26522794 TGCAAAAGGG
* *
26522804 CTTATCTCCCTGAGATTACATCGGAGCATATTGAAGCTGGTAAT
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTGGTAAT
* * ** ** * *
26522848 CCTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAT-TTCAGAT
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CTGGT-A-AT
* *
26522894 CTTATCTCCTTGAGATTACAGCGGAGCAGATTGCAGCTGGTAAT
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTGGTAAT
* * *
26522938 CTTTTCTCCCTGAGATTACAGTGGAGCGGATT
1 CTTATCTCCCTGAGATTACAGCGGAGCAGATT
26522970 AAAATCAAGT
Statistics
Matches: 94, Mismatches: 24, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
44 59 0.63
45 4 0.04
46 31 0.33
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTGGTAAT
Found at i:26525057 original size:19 final size:20
Alignment explanation
Indices: 26525029--26525068 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
26525019 TTCTAAATTA
*
26525029 TTATCCACATCA-TTTAAAT
1 TTATCAACATCATTTTAAAT
*
26525048 TTATCAACATTATTTTAAAT
1 TTATCAACATCATTTTAAAT
26525068 T
1 T
26525069 CTTTTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (20 bp):
TTATCAACATCATTTTAAAT
Found at i:26534074 original size:27 final size:26
Alignment explanation
Indices: 26534043--26534096 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
26534033 ATTTTTATTC
*
26534043 TACATACATATCTTTGATTTATATATA
1 TACATACATATATTT-ATTTATATATA
* *
26534070 TACATACTTATATTTTTTTATATATA
1 TACATACATATATTTATTTATATATA
26534096 T
1 T
26534097 TTTATAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (26 bp):
TACATACATATATTTATTTATATATA
Found at i:26534131 original size:22 final size:22
Alignment explanation
Indices: 26534041--26534135 Score: 72
Period size: 20 Copynumber: 4.5 Consensus size: 22
26534031 CTATTTTTAT
* *
26534041 TCTACATACATATCTTTGATTTA
1 TCTATATACATATCTTT-ATATA
* *
26534064 TATATATACATA-C-TTATATT
1 TCTATATACATATCTTTATATA
* * *
26534084 TTTTTATATATAT-TTTATA-A
1 TCTATATACATATCTTTATATA
* *
26534104 TTTATATACATATCTATATATA
1 TCTATATACATATCTTTATATA
26534126 TCTATATACA
1 TCTATATACA
26534136 CTTTTTTATT
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
20 23 0.41
21 12 0.21
22 11 0.20
23 10 0.18
ACGTcount: A:0.37, C:0.11, G:0.01, T:0.52
Consensus pattern (22 bp):
TCTATATACATATCTTTATATA
Found at i:26534213 original size:16 final size:16
Alignment explanation
Indices: 26534192--26534222 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26534182 TACAATTTTT
26534192 ATATACATATATATAC
1 ATATACATATATATAC
26534208 ATATACATATATATA
1 ATATACATATATATA
26534223 TCTTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATACATATATATAC
Found at i:26534361 original size:13 final size:13
Alignment explanation
Indices: 26534345--26534376 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26534335 TGTATAATTG
*
26534345 ATTTGTCCTTTTT
1 ATTTGTCATTTTT
26534358 ATTTGTCATTTTT
1 ATTTGTCATTTTT
26534371 ATTTGT
1 ATTTGT
26534377 TGTTGTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.69
Consensus pattern (13 bp):
ATTTGTCATTTTT
Found at i:26534740 original size:73 final size:73
Alignment explanation
Indices: 26534598--26534740 Score: 225
Period size: 73 Copynumber: 2.0 Consensus size: 73
26534588 CTTTTCAAAC
* * *
26534598 TCAAGTTTTAAACGATCTCGGGAATTAAGAAGAATCGTGTCCTAACTTACTGGGCATGATCCCTG
1 TCAAGTTTTAAACGATCTCGGGAATTAAGAAAAATCGTGTCCTAACATACTGGGCATGATCCCTA
26534663 TTTTTTCT
66 TTTTTTCT
* *
26534671 TCAAGTTTTAAGCGATCTCGGGAATTAAGAAAAGATCGTGTCCTAACATATTGGGCATGAT-CCT
1 TCAAGTTTTAAACGATCTCGGGAATTAAGAAAA-ATCGTGTCCTAACATACTGGGCATGATCCCT
26534735 ATTTTT
65 ATTTTT
26534741 AAATCCGAGA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 39 0.61
74 25 0.39
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (73 bp):
TCAAGTTTTAAACGATCTCGGGAATTAAGAAAAATCGTGTCCTAACATACTGGGCATGATCCCTA
TTTTTTCT
Found at i:26537275 original size:5 final size:5
Alignment explanation
Indices: 26537256--26537315 Score: 81
Period size: 5 Copynumber: 12.4 Consensus size: 5
26537246 TAGTGGAGGC
*
26537256 AACAA AA-AGA AACAA AACAA AA-AA AACAA AACAA AATAA AACAA AACAA
1 AACAA AACA-A AACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA
26537305 AA-AA AACAA AA
1 AACAA AACAA AA
26537316 TACCTTCTAC
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
4 9 0.18
5 39 0.80
6 1 0.02
ACGTcount: A:0.83, C:0.13, G:0.02, T:0.02
Consensus pattern (5 bp):
AACAA
Found at i:26537289 original size:29 final size:29
Alignment explanation
Indices: 26537256--26537315 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
26537246 TAGTGGAGGC
26537256 AACAAAA-AGAAACAAAACAAAAAAAACAA
1 AACAAAATA-AAACAAAACAAAAAAAACAA
26537285 AACAAAATAAAACAAAACAAAAAAAACAA
1 AACAAAATAAAACAAAACAAAAAAAACAA
26537314 AA
1 AA
26537316 TACCTTCTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 29 0.97
30 1 0.03
ACGTcount: A:0.83, C:0.13, G:0.02, T:0.02
Consensus pattern (29 bp):
AACAAAATAAAACAAAACAAAAAAAACAA
Found at i:26537311 original size:24 final size:24
Alignment explanation
Indices: 26537256--26537317 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
26537246 TAGTGGAGGC
*
26537256 AACAAAA-AGAAACAAAACAAAAAA
1 AACAAAACA-AAATAAAACAAAAAA
26537280 AACAAAACAAAATAAAACAAAACAA
1 AACAAAACAAAATAAAACAAAA-AA
26537305 AA-AAAACAAAATA
1 AACAAAACAAAATA
26537318 CCTTCTACCG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
24 30 0.86
25 5 0.14
ACGTcount: A:0.82, C:0.13, G:0.02, T:0.03
Consensus pattern (24 bp):
AACAAAACAAAATAAAACAAAAAA
Found at i:26538735 original size:50 final size:50
Alignment explanation
Indices: 26538668--26540812 Score: 1161
Period size: 50 Copynumber: 42.9 Consensus size: 50
26538658 ACCCCTGAGG
** *
26538668 TTGCAGTTAAAAAGATTGAAGCCATAACGGTGAATCTTACTTCCCTGACGA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAC-A
* ** * *
26538719 -TACAGTGGAATGGATTGAA-CCTACAACGGTGAATCATGCTTCCCCT-ACA
1 TTGCAGTGGAAAAGATTGAAGCC-ACAACGGTGAATCTTACTT-CCCTGACA
* * ** *
26538768 TTGTAATTAAAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGACGA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAC-A
* ** * *
26538819 -TACAGTGGAATGGATTGAA-CCTACAACGGTGAATCATGCTTCCCCT-ACA
1 TTGCAGTGGAAAAGATTGAAGCC-ACAACGGTGAATCTTACTT-CCCTGACA
* * ** * *
26538868 TTGTAATTAAAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * *** * * *
26538918 GTGCAGTGGAATAGATTGAAGTTGCAACGGTGAATCTTGCTTCCCCGGCA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** * *
26538968 TTGAAATTAAAAAGATTGAAGCCACAACGATGAATCTTACTTCCCTGGCA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * *** *
26539018 GTGCAGTGGAACAGATTGAAGCTACAACGAAAAATCTTACTTCCCTAGCCA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACA
* * * * *
26539069 -TGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTGCTTCCCCGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** * * *
26539118 TTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTTCCTGGCG
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* ** * * *
26539168 GTGCAGTGGAACAA-ATTGAAGTTACAATGGTGAATCTTGCTTCCCCGACA
1 TTGCAGTGGAA-AAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* ** * *
26539218 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT-AGCG
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGA-CA
* * ** * * *
26539268 GTGCAGTGGAACAGATTGAAGGTACAACGGCGAATCTTGCTTCCCGGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** * * * * ***
26539318 TTACAATTAAAAAGCTTGAAGCCACAATGGCGAATCTTACTTCCTTGGTG
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** ** ** * *
26539368 GTGCAATGGATCAGATTGAAGGTACAACGGCAAATCTTGCTT-TCTCGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACA
* ** * * *
26539418 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTCCCCTGGCG
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * * * *
26539468 GTGCAGTGGAACAA-ATTGAAGCTAAAATGGCGAATCTTGCTT-CCTCGACA
1 TTGCAGTGGAA-AAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACA
* ** * * ** * * *
26539518 TTGCAATTAAAAATATTTAAGCCACAACGACGAATCTTACTTCTCTGGCG
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * ** * * *
26539568 GTGCAGTGGAATAGATTAAAGGTAGAACGGTGAATCTTACTTCCCCGATA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* ** * ** *
26539618 TTG-ATATTCAAAAGGTTGAAGCCACAACGGCAAATCTTACTTCCCTGGCA
1 TTGCA-GTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * ** * *
26539668 GTGCAGTGGAACAGATTCAAGCTGCAACAGTGAATCTTACTTCCCCGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** ** * *
26539718 TTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCTTTGGCG
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** * *
26539768 GTGCAGTGGAATAGATTGAAGGTACAACGGCGAATCTTGCTTCCCTGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* ** * *
26539818 TTGCAATTAAAAAGATTGATGCCACAACGG-GAAATCTTACTTCCCTGGA-G
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTG-AATCTTACTTCCCT-GACA
* * * * * *
26539868 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGC-TCCCTGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** ***
26539917 TTGCAAT-TAAAATGATTGAAGCCACAACGACGAATCTTACTTCCCTGGTG
1 TTGCAGTGGAAAA-GATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * * * ** *
26539967 GTGCAATGGAACAGATTGAAGCTACAATGGCAAATCTTGCTTTCCC-GACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTAC-TTCCCTGACA
* ** ** * *
26540017 TTGCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCCCTGGA-G
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACA
* * * * ** * *
26540067 GTGCAGTGGAACAGATTGAAGCTACAATGGCAAATCTTGCTTTCCC-GAGA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTAC-TTCCCTGACA
* ** ** * *
26540117 TTGCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCCCTGGA-G
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACA
* * * * * * *
26540167 GTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGGCA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * * ** * *
26540217 TTGCAAT-TAAAACGATTGAAGCCACAATGGCGAATCTTACTTTACTGGCG
1 TTGCAGTGGAAAA-GATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * * * * ** * *
26540267 GTGCAGTGCAACAGATGGAAGCTACAGCGGCAAATCTTGCTTCCCCGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* ** * * * ***
26540317 TTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCTTGGTG
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * * * * * * * *
26540367 GTGTAGTGGAATAGATTGAAGCTATAACAGCGAATCTTGCTTCCCCGGCA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* ** * * *
26540417 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCG
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** * **
26540467 GTGCAGTTGAACAA-ATTGAAGTTACAACGGCGAATCTTGTTTCCCTGACA
1 TTGCAGTGGAA-AAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* ** * * * **
26540517 TTGCATTTAAAAAGATTAAAGCCATAACGGTGAATTTTACTTCCCTGGTA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * ** * * *
26540567 GTGCAGTGGAATAGATTAAAGTTATAACGGCGAATCTTGCTTCGCC-GACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTC-CCTGACA
* * ** * **
26540617 TTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTGTTTCCCTGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
** ** * * * **
26540667 TTGCCTTTAAAAAGATTAAAGCCATAACGGTGAATTTTACTTCCCTGGTA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * * ** * * * *
26540717 GTGCAGTGGAATAGATTAAAGTTATAACGGCGAATCTTGCTTCCCCGACA
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
* * ** * *
26540767 TTACAATTAAAAAGATTGAAGTCACAACGGTGAATTTTACTTCCCT
1 TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT
26540813 AGCGGTGTAG
Statistics
Matches: 1542, Mismatches: 506, Indels: 93
0.72 0.24 0.04
Matches are distributed among these distances:
48 5 0.00
49 81 0.05
50 1403 0.91
51 53 0.03
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
TTGCAGTGGAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACA
Found at i:26538985 original size:150 final size:150
Alignment explanation
Indices: 26538668--26540812 Score: 1378
Period size: 150 Copynumber: 14.3 Consensus size: 150
26538658 ACCCCTGAGG
* * * * ** **
26538668 TTGCAGTTAAAAAGATTGAAGCCATAACGGTGAATCTTACTTCCCTGACGA-TACAGTGGAATGG
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGAC-ATTGCAGTTAAAAAG
* * * * * * ** * *
26538732 ATTGAA-CCTACAACGGTGAATCATGCTTCCCCT-ACATTGTAATTAAAAAGATTAAAGCCACAA
65 ATTGAAGCC-ACAACGGCGAATCTTACTT-CCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAA
* * *
26538795 CGGTGAATCTTACTTCCCTGACGA
128 CGGCGAATCTTGCTTCCCCGAC-A
* * ** ** * * * * *
26538819 -TACAGTGGAATGGATTGAA-CCTACAACGGTGAATCATGCTTCCCCT-ACATTGTAATTAAAAA
1 TTGCAATTAAAAAGATTGAAGCC-ACAACGGCGAATCTTACTT-CCCTGACATTGCAGTTAAAAA
* * * * * *
26538881 GATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAATAGATTGAAGTTGCAAC
64 GATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAAC
* *
26538946 GGTGAATCTTGCTTCCCCGGCA
129 GGCGAATCTTGCTTCCCCGACA
* ** * * ** *
26538968 TTGAAATTAAAAAGATTGAAGCCACAACGATGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAGA
* *** * * * *
26539033 TTGAAGCTACAACGAAAAATCTTACTTCCCTAGCCA-TGCAGTGGAACAGATTGAAACTACAACG
66 TTGAAGCCACAACGGCGAATCTTACTTCCCT-GGCAGTGCAATGGAAAAGATTGAAGCTACAACG
*
26539097 GTGAATCTTGCTTCCCCGACA
130 GCGAATCTTGCTTCCCCGACA
* * * * ** * *
26539118 TTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGAACAA-
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGT-TAAAAAG
** * * * * * * ** *
26539182 ATTGAAGTTACAATGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
65 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACG
* * *
26539247 GCGAATCTTACTT-CCCTAGCG
130 GCGAATCTTGCTTCCCCGA-CA
* * ** * ** * * * * *
26539268 GTGCAGTGGAACAGATTGAAGGTACAACGGCGAATCTTGCTTCCCGGACATTACAATTAAAAAGC
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAGA
* * ** ** *
26539333 TTGAAGCCACAATGGCGAATCTTACTTCCTTGGTGGTGCAATGGATCAGATTGAAGGTACAACGG
66 TTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACGG
* * *
26539398 CAAATCTTGCTTTCTCGACA
131 CGAATCTTGCTTCCCCGACA
* * * ** * *
26539418 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTCCCCTGGCGGTGCAGTGGAACAA-
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGT-TAAAAAG
* * * * * * ** * * *
26539482 ATTGAAGCTAAAATGGCGAATCTTGCTT-CCTCGACATTGCAATTAAAAATATTTAAGCCACAAC
65 ATTGAAGCCACAACGGCGAATCTTACTTCCCT-GGCAGTGCAATGGAAAAGATTGAAGCTACAAC
* * * * * *
26539546 GACGAATCTTACTTCTCTGGCG
129 GGCGAATCTTGCTTCCCCGACA
* * ** * * ** * * * * * *
26539568 GTGCAGTGGAATAGATTAAAGGTAGAACGGTGAATCTTACTTCCCCGATATTG-ATATTCAAAAG
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCA-GTTAAAAAG
* * * * * * *
26539632 GTTGAAGCCACAACGGCAAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTCAAGCTGCAACA
65 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACG
* *
26539697 GTGAATCTTACTTCCCCGACA
130 GCGAATCTTGCTTCCCCGACA
* * ** * ** ** *
26539718 TTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCTTTGGCGGTGCAGTGGAATAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAGA
** * * * ** * *
26539783 TTGAAGGTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGATGCCACAACGG
66 TTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACGG
* * *
26539848 -GAAATCTTACTTCCCTGGA-G
131 CG-AATCTTGCTTCCC-CGACA
* * ** * * * * * *
26539868 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGC-TCCCTGACATTGCAATTAAAATGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAGA
* ** * *
26539932 TTGAAGCCACAACGACGAATCTTACTTCCCTGGTGGTGCAATGGAACAGATTGAAGCTACAATGG
66 TTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACGG
* *
26539997 CAAATCTTGCTTTCCCGACA
131 CGAATCTTGCTTCCCCGACA
** ** ** *
26540017 TTGCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCCCTGGA-GGTGCAGTGGAACAG
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT-GACATTGCAGTTAAAAAG
* * * * * ** *
26540081 ATTGAAGCTACAATGGCAAATCTTGCTTTCCC-GAG-ATTGCAATTAAAAAGATTGAAGCCACAA
65 ATTGAAGCCACAACGGCGAATCTTAC-TTCCCTG-GCAGTGCAATGGAAAAGATTGAAGCTACAA
** * * *
26540144 TAGCGAATCTTACTTCCCTGGA-G
128 CGGCGAATCTTGCTTCCC-CGACA
* * ** * * * * * * *
26540167 GTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGGCATTGCAATTAAAACGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAGA
* ** * * * * * *
26540232 TTGAAGCCACAATGGCGAATCTTACTTTACTGGCGGTGCAGTGCAACAGATGGAAGCTACAGCGG
66 TTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACGG
*
26540297 CAAATCTTGCTTCCCCGACA
131 CGAATCTTGCTTCCCCGACA
* * **** * ** *
26540317 TTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCTTGGTGGTGTAGTGGAATAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAGA
* * * * * * ** *
26540382 TTGAAGCTATAACAGCGAATCTTGCTTCCCCGGCATTGCAATTAAAAAGATTGAAGCCACAACGG
66 TTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACGG
* * * *
26540447 CGAATCTTACTTCCCTGGCG
131 CGAATCTTGCTTCCCCGACA
* * * ** ** *
26540467 GTGCAGTTGAACAA-ATTGAAGTTACAACGGCGAATCTTGTTTCCCTGACATTGCATTTAAAAAG
1 TTGCAATT-AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAG
* * * * * * * * * *
26540531 ATTAAAGCCATAACGGTGAATTTTACTTCCCTGGTAGTGCAGTGGAATAGATTAAAGTTATAACG
65 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACG
*
26540596 GCGAATCTTGCTTCGCCGACA
130 GCGAATCTTGCTTCCCCGACA
* ** **
26540617 TTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTGTTTCCCTGACATTGCCTTTAAAAAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAGA
* * * * * * * * * *
26540682 TTAAAGCCATAACGGTGAATTTTACTTCCCTGGTAGTGCAGTGGAATAGATTAAAGTTATAACGG
66 TTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACGG
26540747 CGAATCTTGCTTCCCCGACA
131 CGAATCTTGCTTCCCCGACA
* * * *
26540767 TTACAATTAAAAAGATTGAAGTCACAACGGTGAATTTTACTTCCCT
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
26540813 AGCGGTGTAG
Statistics
Matches: 1505, Mismatches: 454, Indels: 71
0.74 0.22 0.03
Matches are distributed among these distances:
148 2 0.00
149 149 0.10
150 1313 0.87
151 41 0.03
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (150 bp):
TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTTAAAAAGA
TTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAATGGAAAAGATTGAAGCTACAACGG
CGAATCTTGCTTCCCCGACA
Found at i:26540696 original size:100 final size:99
Alignment explanation
Indices: 26538980--26540663 Score: 2078
Period size: 100 Copynumber: 16.8 Consensus size: 99
26538970 GAAATTAAAA
* ** * * * * ** * *
26538980 AGATTGAAGCCACAACGATGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
*** * **
26539045 CGAAAAATCTTACTTCCCTAGCCATGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
26539080 AGATTGAAACTACAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
26539145 CGGTGAATCTTACTTTCCTGGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * *
26539180 AAATTGAAGTTACAATGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
*
26539245 CGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
26539280 AGATTGAAGGTACAACGGCGAATCTTGCTTCCCGGACATTACAATTAAAAAGCTTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
26539345 TGGCGAATCTTACTTCCTTGGTGGTGCAATGGATC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
26539380 AGATTGAAGGTACAACGGCAAATCTTGCTTTCTCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGC-TTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
26539445 CGGTGAATCTTACTCCCCTGGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * *
26539480 AAATTGAAGCTAAAATGGCGAATCTTGCTTCCTCGACATTGCAATTAAAAATATTTAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
26539545 CGACGAATCTTACTTCTCTGGCGGTGCAGTGGAAT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * * * *
26539580 AGATTAAAGGTAGAACGGTGAATCTTACTTCCCCGATATTG-ATATTCAAAAGGTTGAAGCCACA
1 AGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCA-ATTAAAAAGATTGAAGCCACA
* *
26539644 ACGGCAAATCTTACTTCCCTGGCAGTGCAGTGGAAC
64 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * *
26539680 AGATTCAAGCTGCAACAGTGAATCTTACTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** *
26539745 CGGTGAATCTTACTTCTTTGGCGGTGCAGTGGAAT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
26539780 AGATTGAAGGTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGATGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
*
26539845 CGG-GAAATCTTACTTCCCTGGAGGTGCAGTGGAAC
65 CGGCG-AATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
26539880 AGATTGAAGCTACAATGGCGAATCTTGC-TCCCTGACATTGCAATTAAAATGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
26539944 CGACGAATCTTACTTCCCTGGTGGTGCAATGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
26539979 AGATTGAAGCTACAATGGCAAATCTTGCTTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGC-TTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** *
26540044 TAGCGAATCTTACTTCCCTGGAGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
26540079 AGATTGAAGCTACAATGGCAAATCTTGCTTTCCCGAGATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGC-TTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** *
26540144 TAGCGAATCTTACTTCCCTGGAGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
26540179 AGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGGCATTGCAATTAAAACGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** *
26540244 TGGCGAATCTTACTTTACTGGCGGTGCAGTGCAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
26540279 AGATGGAAGCTACAGCGGCAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
26540344 CAGCGAATCTTACTTCCTTGGTGGTGTAGTGGAAT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
26540379 AGATTGAAGCTATAACAGCGAATCTTGCTTCCCCGGCATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
*
26540444 CGGCGAATCTTACTTCCCTGGCGGTGCAGTTGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * *
26540479 AAATTGAAGTTACAACGGCGAATCTTGTTTCCCTGACATTGCATTTAAAAAGATTAAAGCCATAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** *
26540544 CGGTGAATTTTACTTCCCTGGTAGTGCAGTGGAAT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * *
26540579 AGATTAAAGTTATAACGGCGAATCTTGCTTCGCCGACATTACAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAA
**
26540644 CGGCGAATCTTGTTTCCCTG
65 CGGCGAATCTTACTTCCCTG
26540664 ACATTGCCTT
Statistics
Matches: 1384, Mismatches: 185, Indels: 30
0.87 0.12 0.02
Matches are distributed among these distances:
99 107 0.08
100 1261 0.91
101 16 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (99 bp):
AGATTGAAGCTACAACGGCGAATCTTGCTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAAC
GGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
Found at i:26540851 original size:100 final size:100
Alignment explanation
Indices: 26540647--26540854 Score: 236
Period size: 100 Copynumber: 2.1 Consensus size: 100
26540637 GCCACAACGG
* * * ** *
26540647 CGAATCTTGTTTCCCTGACATTGCCTTTAAAAAGATTAAAGCCATAACGGTGAATTTTACTTCCC
1 CGAATCTTGCTTCCCCGACATTACAATTAAAAAGATTAAAGCCACAACGGTGAATTTTACTTCCC
* * * * * * **
26540712 TGGTAGTGCAGTGGAATAGATTAAAGTTATAACGG
66 TAGCAGTGCAGTGGAACAAATTAAAGCTACAACAA
* *
26540747 CGAATCTTGCTTCCCCGACATTACAATTAAAAAGATTGAAGTCACAACGGTGAATTTTACTTCCC
1 CGAATCTTGCTTCCCCGACATTACAATTAAAAAGATTAAAGCCACAACGGTGAATTTTACTTCCC
* * * *
26540812 TAGCGGTGTAGTGGAACAAATTGAAGCTACAATAA
66 TAGCAGTGCAGTGGAACAAATTAAAGCTACAACAA
26540847 CGAATCTT
1 CGAATCTT
26540855 ATCTTATCAA
Statistics
Matches: 88, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
100 88 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (100 bp):
CGAATCTTGCTTCCCCGACATTACAATTAAAAAGATTAAAGCCACAACGGTGAATTTTACTTCCC
TAGCAGTGCAGTGGAACAAATTAAAGCTACAACAA
Found at i:26541652 original size:23 final size:23
Alignment explanation
Indices: 26541622--26541665 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
26541612 ACTACGGTAG
*
26541622 TGGTCCCTCTGCTTTTGCAACCC
1 TGGTCCCTCCGCTTTTGCAACCC
26541645 TGGTCCCTCCGCTTTTGCAAC
1 TGGTCCCTCCGCTTTTGCAAC
26541666 GCGTTGCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.39, G:0.18, T:0.34
Consensus pattern (23 bp):
TGGTCCCTCCGCTTTTGCAACCC
Found at i:26541984 original size:23 final size:23
Alignment explanation
Indices: 26541945--26541990 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
26541935 CTATTTACCT
26541945 TTTTATATATATATATTATTTTA
1 TTTTATATATATATATTATTTTA
*
26541968 TTTTAT-TATGTACTATTATTTTA
1 TTTTATATATATA-TATTATTTTA
26541991 ATTCTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTATATATATATATTATTTTA
Found at i:26542427 original size:12 final size:13
Alignment explanation
Indices: 26542389--26542433 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 13
26542379 ATATCTTTTA
*
26542389 CTTT-TTTATAAT
1 CTTTATTTATTAT
*
26542401 C-TTATTCATTAT
1 CTTTATTTATTAT
26542413 CTTTATTTATT-T
1 CTTTATTTATTAT
26542425 CTTTATTTA
1 CTTTATTTA
26542434 CATTTTCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 2 0.07
12 18 0.64
13 8 0.29
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (13 bp):
CTTTATTTATTAT
Found at i:26542520 original size:13 final size:13
Alignment explanation
Indices: 26542504--26542535 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26542494 TGTATAATTG
*
26542504 ATTTGTCCTTTTT
1 ATTTGTCATTTTT
26542517 ATTTGTCATTTTT
1 ATTTGTCATTTTT
26542530 ATTTGT
1 ATTTGT
26542536 TGTTGTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.69
Consensus pattern (13 bp):
ATTTGTCATTTTT
Found at i:26545117 original size:36 final size:36
Alignment explanation
Indices: 26545077--26545151 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
26545067 AATTGGTACC
* *
26545077 TAAGCTATACCCTTTTCCTTAAGTTGGCATCTCCGT
1 TAAGCTATACCATTTTCCTTAAGTTGGCATCTCCAT
26545113 TAAGCTATACCATTTTCCTTAAGTTGGCATCTCCAT
1 TAAGCTATACCATTTTCCTTAAGTTGGCATCTCCAT
26545149 TAA
1 TAA
26545152 TCCAACTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (36 bp):
TAAGCTATACCATTTTCCTTAAGTTGGCATCTCCAT
Found at i:26552946 original size:23 final size:24
Alignment explanation
Indices: 26552743--26553656 Score: 104
Period size: 29 Copynumber: 31.4 Consensus size: 24
26552733 TTAAATTAGG
*
26552743 TTAGGGTTAGGGTTTTTAAATAAATTA
1 TTAGGGTTAGGGTTTTT-AATTAA--A
26552770 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
*
26552796 TTAGATTAGGTTTAGGGTTTTTAAATAAA
1 TTAG----GG-TTAGGGTTTTTAATTAAA
26552825 TTAGGTTAGTGTTAGGG-TTTTAATTGAATTA
1 TTA-G---G-GTTAGGGTTTTTAATT-AA--A
**
26552856 GTTTAGGGTTAGGGTTTAGGATTAAATTAGG
1 --TTAGGGTTAGGGTTT----TT-AATTAAA
26552887 TTAGGGTTAGGGTTTTTAATTAAA
1 TTAGGGTTAGGGTTTTTAATTAAA
26552911 TTAGGTTGGGGTTAGGGTTTTTAATTAAA
1 TTA-----GGGTTAGGGTTTTTAATTAAA
* *
26552940 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26552973 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26552999 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553032 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553058 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553091 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553117 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553150 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553176 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553209 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553235 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553268 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553294 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553327 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553353 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553386 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553412 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553445 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553471 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553504 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553530 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553563 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
* *
26553589 TTAGGTTAGTGTTACGGTTTTTTTATTAAATTA
1 TTA-G---G-GTTA-GGGTTTTTAATT-AA--A
26553622 GGTTAGGGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTAGGGTTTTTAATTAAA
26553648 TTA-GGTTAG
1 TTAGGGTTAG
26553657 TGTTACGGTT
Statistics
Matches: 676, Mismatches: 55, Indels: 314
0.65 0.05 0.30
Matches are distributed among these distances:
23 6 0.01
24 48 0.07
25 15 0.02
26 13 0.02
28 57 0.08
29 259 0.38
30 170 0.25
31 37 0.05
32 1 0.00
33 18 0.03
34 16 0.02
35 36 0.05
ACGTcount: A:0.26, C:0.01, G:0.25, T:0.48
Consensus pattern (24 bp):
TTAGGGTTAGGGTTTTTAATTAAA
Found at i:26552988 original size:59 final size:59
Alignment explanation
Indices: 26552707--26553853 Score: 1785
Period size: 59 Copynumber: 19.4 Consensus size: 59
26552697 AAATTATGTA
* * * *
26552707 AAATTAGGTTAG-G-GACGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAAAT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * * * * *
26552764 AAATTAGGTTAGGGTTA-GGGTTTTTAATTAAATTAGATTAGGTTTAGGGTTTTTAAAT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * * * ***
26552822 AAATTAGGTTAGTGTTA-GG-GTTTTAATTGAATTAGTTTAGGGTTAGGGTTTAGGATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * * *
26552879 AAATTAGGTTAGGGTTA-GGGTTTTTAATTAAATTAGGTTGGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26552937 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26552996 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553055 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553114 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553173 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553232 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553291 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553350 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553409 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553468 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553527 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
26553586 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
*
26553645 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTACTT
1 AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * ** * * *
26553704 ---TTAGGTTAGGGTTAAGGTTAAGATTTAGGGTTTAAGGTTTAAGGCTTAAGGCTTAAGGTTTT
1 AAATTAGGTTAGTGTTACGGTT--TTTTTA----TTAA--ATT-AGG-TT-AGGGTTAGGGTTTT
*
26553766 TAAAT
55 TAATT
* * *
26553771 AAATTAGGTTAAG-GTTA-GGGTTTTTAAATAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTT-AGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * *
26553829 AAATTATGTTAGGGTTAGGGTTTTT
1 AAATTAGGTTAGTGTTACGGTTTTT
26553854 ACTTTAATTA
Statistics
Matches: 1024, Mismatches: 45, Indels: 40
0.92 0.04 0.04
Matches are distributed among these distances:
56 17 0.02
57 62 0.06
58 138 0.13
59 754 0.74
60 3 0.00
61 2 0.00
62 4 0.00
63 3 0.00
64 2 0.00
65 3 0.00
66 2 0.00
67 18 0.02
69 3 0.00
70 11 0.01
71 2 0.00
ACGTcount: A:0.26, C:0.01, G:0.25, T:0.47
Consensus pattern (59 bp):
AAATTAGGTTAGTGTTACGGTTTTTTTATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:26553742 original size:7 final size:7
Alignment explanation
Indices: 26553715--26553764 Score: 57
Period size: 7 Copynumber: 7.3 Consensus size: 7
26553705 TAGGTTAGGG
26553715 TTAAGG-
1 TTAAGGT
*
26553721 TTAAGAT
1 TTAAGGT
*
26553728 TTAGGGT
1 TTAAGGT
26553735 TTAAGGT
1 TTAAGGT
*
26553742 TTAAGGC
1 TTAAGGT
*
26553749 TTAAGGC
1 TTAAGGT
26553756 TTAAGGT
1 TTAAGGT
26553763 TT
1 TT
26553765 TTAAATAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
6 5 0.14
7 32 0.86
ACGTcount: A:0.28, C:0.04, G:0.28, T:0.40
Consensus pattern (7 bp):
TTAAGGT
Found at i:26561735 original size:50 final size:50
Alignment explanation
Indices: 26561551--26561742 Score: 154
Period size: 50 Copynumber: 3.8 Consensus size: 50
26561541 ACATTTGGGT
* * *
26561551 GATGAG-A-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGA
1 GATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCA-C--CGA
** ** * * * *
26561602 GATTATGAGAGGTCCTATGTAGGACCATGTCTAGGACATGGCGTTGGCACCGA
1 G---ATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
** *
26561655 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 GATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
* * * *
26561705 TATGAGAACTCCCGTGTAAGACCATATCTGGGATATGG
1 GATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGG
26561743 AATTTGCAGT
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
50 73 0.63
51 1 0.01
53 3 0.03
54 5 0.04
55 1 0.01
56 33 0.28
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
GATGAGAACTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
Found at i:26578386 original size:41 final size:39
Alignment explanation
Indices: 26578338--26578448 Score: 109
Period size: 37 Copynumber: 2.8 Consensus size: 39
26578328 TCGACCTTGA
26578338 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
26578378 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
* *
26578416 GCCGATGAGACACTGGGTGTCAACTATTGCTTC
1 GTCGATGAGACACTGGGTGTCAACTATTACTTC
26578449 AAACTATCCG
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
37 18 0.33
38 11 0.20
39 6 0.11
40 2 0.04
41 17 0.31
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:26579176 original size:17 final size:17
Alignment explanation
Indices: 26579127--26579177 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
26579117 ATGTGGCATG
*
26579127 TACCTAAGTAATGTACA
1 TACCTAAGTAATGTATA
*
26579144 TACCTAGGTAATGTATA
1 TACCTAAGTAATGTATA
*
26579161 TACCTAAGTGATGTATA
1 TACCTAAGTAATGTATA
26579178 GGGATTAGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (17 bp):
TACCTAAGTAATGTATA
Found at i:26582276 original size:37 final size:38
Alignment explanation
Indices: 26582226--26582299 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
26582216 CCCATTTCAT
26582226 TCATTTTGTA-TTTTGGCAAAATATGCTATCTTGATTC
1 TCATTTTGTATTTTTGGCAAAATATGCTATCTTGATTC
* * *
26582263 TCATTTTGTATTTTTGGCAAAATTTGTTATTTTGATT
1 TCATTTTGTATTTTTGGCAAAATATGCTATCTTGATT
26582300 AATTCATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 10 0.30
38 23 0.70
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.54
Consensus pattern (38 bp):
TCATTTTGTATTTTTGGCAAAATATGCTATCTTGATTC
Found at i:26583007 original size:44 final size:44
Alignment explanation
Indices: 26582862--26583741 Score: 372
Period size: 44 Copynumber: 19.6 Consensus size: 44
26582852 TTATGGCGAA
* ** *
26582862 TCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATCAAAGCCACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATACAAG
* * * * *
26582906 TCTTCTCTCCCTAAAGTTGCAGTGGAGCAGACTGAAA-ATAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTAAAGAT-ACAAG
* * *
26582951 CCTTATCTCCCTGAATTTGTAGTGGAGCAAGTTAAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
* * * * *
26582995 TCTTATCTCCCTGTAGTTGTAGTGGAAC-AGATTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* * * * *
26583040 CCTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
* * * *
26583084 CCTTATCTCCCTGAAGTTGAAGTGGAGCAGGTTGAAGATACCAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATA-CAAG
* * * * *
26583128 TTTTATCTCCCTGAAGTTGCAGTGGAG-TAGATTGAAGCTATTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* * * *
26583172 TCCTATCTTCCTGAAGTTGCAGTGGAGC-GGATTAGAATGAT-GAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTA-AA-GATACAAG
* * * * * *
26583216 TCCTATAC-CTCTGAATTTGCAGTAGG-TC-GGATTGAATCTACCATGACAAG
1 TCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAAG-TT-AA---A-GAT-ACAAG
* * * * * * *
26583266 TTTTATCTACCTGAAGTTGCAATGGAG-TAGACTGAAGATAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGAT-ACAAG
* * *
26583311 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
* * * * * *
26583355 TCTTAAC-CTCCTAAAGTTGTAGTGGAGC-AGACTGAAGATAGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* * * * *
26583400 CCTTATCTCTCTGAAGTTGCTGTGGAGCAGGTTGAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
* ** * * * *
26583444 CCTTATCTTGCTGAAGTTGCAGTGAAGTAGGTTGAAGATACCAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATA-CAAG
* ** * * *
26583488 TCTTATCTCCCTGTAGTTGCAGCAGAGC-AGATTGAAGCTATTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* *
26583532 TCCTATCTCCCTGAAGTTGCAGTAGAGAG-AA-TTAAA-ATGATGAA-
1 TCTTATCTCCCTGAAGTTGCAGT-G-GAGCAAGTTAAAGAT-A-CAAG
* * * *
26583576 TCCTATAC-CTCTGAAGTTGCAGTAGG-TC-AGATTAAATCTACCATGACAAG
1 TCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAAG-TT-AA---A-GAT-ACAAG
* * * *
26583626 TCTTATCTCCCTGAAGTTGCAGTGGAGC-AGACTGAAGATAGAAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATA-CAAG
* ** * * *
26583671 CCTTATCTCCCTGAAGTTTTAGTAGAGCAGGTTGAAGATACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
26583715 TCTTATCTCCCTGAAGTTGCAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
26583742 TGAATCGAAG
Statistics
Matches: 649, Mismatches: 136, Indels: 102
0.73 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
43 8 0.01
44 377 0.58
45 187 0.29
46 14 0.02
47 3 0.00
48 1 0.00
49 12 0.02
50 46 0.07
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACAAG
Found at i:26583026 original size:133 final size:133
Alignment explanation
Indices: 26582860--26583153 Score: 349
Period size: 133 Copynumber: 2.2 Consensus size: 133
26582850 TATTATGGCG
* * * ** *
26582860 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCA-CTAGTCTTCTCTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACAGCAAACCTTATCTCCCTAAAGTT
* * *
26582924 GCAGTGGAGCAGACTGAAAATAACAAACCTTATCTCCCTGAATTTGTAGTGGAGCAAGTTAAAGA
66 GCAGTGGAACAGACTGAAAAT-ACAAACCTTATCTCCCTGAAGTTGAAGTGGAGCAAGTTAAAGA
26582989 TA-C
130 TACC
* * ** * *
26582992 AAGTCTTATCTCCCTGTAGTTGTAGTGGAACAGATTGAAGATAGCAAACCTTATCTCCCTGAAGT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACAGCAAACCTTATCTCCCTAAAGT
* ** * * * *
26583057 TGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAAGTTGAAGTGGAGCAGGTTGAAGA
65 TGCAGTGGAACAGACTGAAAATACAAACCTTATCTCCCTGAAGTTGAAGTGGAGCAAGTTAAAGA
26583122 TACC
130 TACC
*
26583126 AATTTTATCTCCCTGAAGTTGCAGTGGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGA
26583154 GTAGATTGAA
Statistics
Matches: 134, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
132 2 0.01
133 96 0.72
134 36 0.27
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (133 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACAGCAAACCTTATCTCCCTAAAGTT
GCAGTGGAACAGACTGAAAATACAAACCTTATCTCCCTGAAGTTGAAGTGGAGCAAGTTAAAGAT
ACC
Found at i:26583478 original size:360 final size:360
Alignment explanation
Indices: 26582904--26583741 Score: 1277
Period size: 360 Copynumber: 2.3 Consensus size: 360
26582894 CAAAGCCACT
* * * * *
26582904 AGTCTTCTCTCCCTAAAGTTGCAGTGGAGCAGACTGAAAATAACAAACCTTATCTCCCTGAATTT
1 AGTCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAACCTTATCTCCCTGAAGTT
* * * *
26582969 GTAGTGGAGCAAGTTAAAGATACAAGTCTTATCTCCCTGTAGTTGTAGTGGAACAGATTGAAGAT
66 GTAGTGGAGCAGGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGAT
26583034 AGCAAACCTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAA
131 AGCAAACCTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAA
* * ** *
26583099 GTTGAAGTGGAGCAGGTTGAAGATACCAATTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
196 GTTGAAGTGAAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTGAA
* * * * *
26583164 GCTATTAATCCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAGAATGATGAATCCTATACCTCTG
261 GCTATTAATCCTATCTCCCTGAAGTTGCAGTAGAGAGAATTAAAATGATGAATCCTATACCTCTG
* * *
26583229 AATTTGCAGTAGGTCGGATTGAATCTACCATGACA
326 AAGTTGCAGTAGGTCAGATTAAATCTACCATGACA
* * *
26583264 AGTTTTATCTACCTGAAGTTGCAATGGAGTAGACTGAAGATAACAAACCTTATCTCCCTGAAGTT
1 AGTCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAACCTTATCTCCCTGAAGTT
* *
26583329 GTAGTGGAGCAGGTTAAAGATACAAGTCTTAAC-CTCCTAAAGTTGTAGTGGAGCAGACTGAAGA
66 GTAGTGGAGCAGGTTAAAGATACAAGTCTTATCTC-CCTGAAGTTGTAGTGGAGCAGACTGAAGA
* * **
26583393 TAGCAAACCTTATCTCTCTGAAGTTGCT-GTGGAGCAGGTTGAAGATACAAGCCTTATCTTGCTG
130 TAGCAAACCTTATCTCCCTGAAGTTG-TAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTG
* * *
26583457 AAGTTGCAGTGAAGTAGGTTGAAGATACCAATCTTATCTCCCTGTAGTTGCAGCAGAGCAGATTG
194 AAGTTGAAGTGAAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTG
26583522 AAGCTATTAATCCTATCTCCCTGAAGTTGCAGTAGAGAGAATTAAAATGATGAATCCTATACCTC
259 AAGCTATTAATCCTATCTCCCTGAAGTTGCAGTAGAGAGAATTAAAATGATGAATCCTATACCTC
26583587 TGAAGTTGCAGTAGGTCAGATTAAATCTACCATGACA
324 TGAAGTTGCAGTAGGTCAGATTAAATCTACCATGACA
*
26583624 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGA-AAACCTTATCTCCCTGAAGT
1 AGTCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATA-ACAAACCTTATCTCCCTGAAGT
* * * *
26583688 TTTAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
65 TGTAGTGGAGCAGGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGTAGTGGAG
26583742 TGAATCGAAG
Statistics
Matches: 430, Mismatches: 44, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
359 1 0.00
360 426 0.99
361 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (360 bp):
AGTCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAACCTTATCTCCCTGAAGTT
GTAGTGGAGCAGGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGAT
AGCAAACCTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAA
GTTGAAGTGAAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTGAA
GCTATTAATCCTATCTCCCTGAAGTTGCAGTAGAGAGAATTAAAATGATGAATCCTATACCTCTG
AAGTTGCAGTAGGTCAGATTAAATCTACCATGACA
Found at i:26583760 original size:89 final size:87
Alignment explanation
Indices: 26582863--26583741 Score: 628
Period size: 89 Copynumber: 9.8 Consensus size: 87
26582853 TATGGCGAAT
* ** ** * * *
26582863 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCACTAGTCTTCTCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
*
26582928 TGGAGCAGACTGAAAATAACAAAC
66 TGGAG-AGACTGAAGAT-ACAAAC
* * * * * *
26582952 CTTATCTCCCTGAATTTGTAGTGGAGCAAGTTAAAGATACAAGTCTTATCTCCCTGTAGTTGTAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* *
26583017 TGGAACAGATTGAAGATAGCAAAC
66 TGG-AGAGACTGAAGATA-CAAAC
* * * *
26583041 CTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATACAAGCCTTATCTCCCTGAAGTTGAAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
** * *
26583106 TGGAGCAGGTTGAAGATACCAAT
66 TGGAG-AGACTGAAGATACAAAC
* * * * * * *
26583129 TTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTATTAA-TCCTATCTTCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CAAGTCTTATCTCCCTGAAGTTGCA
* * * *
26583193 GTGGAGCGGATTAGAATGAT-GAATC
65 GTGGAG-AGACT-GAA-GATACAAAC
* * * * * *
26583218 C-TATAC-CTCTGAATTTGCAGTAGG-TC-GGATTGAATCTACCATGACAAGTTTTATCTACCTG
1 CTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGG-TTG-A---A-GAT-ACAAGTCTTATCTCCCTG
*
26583279 AAGTTGCAATGGAGTAGACTGAAGATAACAAAC
57 AAGTTGCAGTGGAG-AGACTGAAGAT-ACAAAC
* * * * *
26583312 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGATACAAGTCTTAAC-CTCCTAAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTC-CCTGAAGTTGCA
26583376 GTGGAGCAGACTGAAGATAGCAAAC
65 GTGGAG-AGACTGAAGATA-CAAAC
* * * **
26583401 CTTATCTCTCTGAAGTTGCTGTGGAGCAGGTTGAAGATACAAGCCTTATCTTGCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
* ** * *
26583466 TGAAGTAGGTTGAAGATACCAAT
66 TGGAG-AGACTGAAGATACAAAC
* ** * * * *
26583489 CTTATCTCCCTGTAGTTGCAGCAGAGCAGATTGAAGCTATTAA-TCCTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CAAGTCTTATCTCCCTGAAGTTGCA
* * * * * *
26583553 GTAGAGAGAATTAAAATGATGAATC
65 GTGGAGAGACTGAAGAT-A-CAAAC
* * * * *
26583578 C-TATAC-CTCTGAAGTTGCAGTAGG-TCAGATTAAATCTACCATGACAAGTCTTATCTCCCTGA
1 CTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGGTT-GA---A-GAT-ACAAGTCTTATCTCCCTGA
*
26583640 AGTTGCAGTGGAGCAGACTGAAGATAGAAAAC
58 AGTTGCAGTGGAG-AGACTGAAGATA-CAAAC
** *
26583672 CTTATCTCCCTGAAGTTTTAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
26583737 TGGAG
66 TGGAG
26583742 TGAATCGAAG
Statistics
Matches: 612, Mismatches: 137, Indels: 82
0.74 0.16 0.10
Matches are distributed among these distances:
87 8 0.01
88 163 0.27
89 300 0.49
90 8 0.01
91 2 0.00
92 5 0.01
93 9 0.01
94 69 0.11
95 46 0.08
96 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (87 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
TGGAGAGACTGAAGATACAAAC
Found at i:26585293 original size:3 final size:3
Alignment explanation
Indices: 26585287--26585416 Score: 86
Period size: 3 Copynumber: 43.0 Consensus size: 3
26585277 TTTATTATCC
* * *
26585287 ATT ATT ATT ATT -TCT ATT ATT ATT ATA ATTT ATT ATT ATT GTT GTT
1 ATT ATT ATT ATT AT-T ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
* * * * * *
26585333 GTG GTT GTT ACTT A-T ATT ATT ATT ATT ATC ATT ATT AAT ATT ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
26585378 ATT GTT ATT AAT ATT ATT ATT GTT ACTT -GT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT
26585417 GGCACTATTC
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
2 4 0.04
3 90 0.88
4 8 0.08
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:26586611 original size:45 final size:45
Alignment explanation
Indices: 26586546--26586686 Score: 140
Period size: 45 Copynumber: 3.1 Consensus size: 45
26586536 ACAACACATT
* * * *
26586546 TGCAGATTAAA-TCTGCTAATATGGTGTGGGTAAACCACTAATTGG
1 TGCAGATAAAAGT-TGCTAATATGGTGTGGATAAAACACTAAATGG
* * ** *
26586591 TGCAGATAAAAGTTGTTAATACGGTGTGGATAAAACACTAACCGA
1 TGCAGATAAAAGTTGCTAATATGGTGTGGATAAAACACTAAATGG
*** * *
26586636 AATAGATAAAAGTTGCTAATATAGTGTGGATAAATCACTAAATGG
1 TGCAGATAAAAGTTGCTAATATGGTGTGGATAAAACACTAAATGG
26586681 TGCAGA
1 TGCAGA
26586687 CAAGCTGCTA
Statistics
Matches: 74, Mismatches: 21, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
45 73 0.99
46 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (45 bp):
TGCAGATAAAAGTTGCTAATATGGTGTGGATAAAACACTAAATGG
Found at i:26586812 original size:34 final size:34
Alignment explanation
Indices: 26586757--26586828 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
26586747 CTCAAATAGA
*
26586757 TCAATACGGTAGCAATCAATATGATTATAACAAT
1 TCAATACAGTAGCAATCAATATGATTATAACAAT
* * * * *
26586791 TCAATACAGTAGTAATTAATATGCTTCTAACAGT
1 TCAATACAGTAGCAATCAATATGATTATAACAAT
26586825 TCAA
1 TCAA
26586829 CTTAGTAGCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (34 bp):
TCAATACAGTAGCAATCAATATGATTATAACAAT
Found at i:26587159 original size:29 final size:28
Alignment explanation
Indices: 26587122--26587236 Score: 124
Period size: 28 Copynumber: 4.0 Consensus size: 28
26587112 AAAGCAGGAA
*
26587122 AAAATTATAAAATTTGAAAAAATAGGGAC
1 AAAATTATAAAATCT-AAAAAATAGGGAC
* **
26587151 AAATTTATAAAATCTAAAAAATAGGGGT
1 AAAATTATAAAATCTAAAAAATAGGGAC
*
26587179 AAAATTATAAAATATAAAAAATATGGG-C
1 AAAATTATAAAATCTAAAAAATA-GGGAC
* * *
26587207 AAAACTATATAATCTGAAAAATAGAGGAC
1 AAAATTATAAAATCTAAAAAATAG-GGAC
26587236 A
1 A
26587237 CACGACCGTG
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 1 0.01
28 53 0.74
29 18 0.25
ACGTcount: A:0.57, C:0.05, G:0.13, T:0.24
Consensus pattern (28 bp):
AAAATTATAAAATCTAAAAAATAGGGAC
Found at i:26587227 original size:56 final size:57
Alignment explanation
Indices: 26587122--26587230 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 57
26587112 AAAGCAGGAA
* **
26587122 AAAATTATAAAATTTGAAAAAATAGGGACAAATTTATAAAATCTAAAAAATAGGGGT
1 AAAATTATAAAATATGAAAAAATAGGGACAAAACTATAAAATCTAAAAAATAGGGGT
* *
26587179 AAAATTATAAAATAT-AAAAAATATGGG-CAAAACTATATAATCTGAAAAATAG
1 AAAATTATAAAATATGAAAAAATA-GGGACAAAACTATAAAATCTAAAAAATAG
26587231 AGGACACACG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 29 0.63
57 17 0.37
ACGTcount: A:0.58, C:0.05, G:0.12, T:0.26
Consensus pattern (57 bp):
AAAATTATAAAATATGAAAAAATAGGGACAAAACTATAAAATCTAAAAAATAGGGGT
Found at i:26587953 original size:19 final size:19
Alignment explanation
Indices: 26587929--26587967 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26587919 AAAAGGGGGA
26587929 GAAAAGA-AAATTTTAAAGG
1 GAAAAGAGAAA-TTTAAAGG
*
26587948 GAAAAGAGGAATTTAAAGG
1 GAAAAGAGAAATTTAAAGG
26587967 G
1 G
26587968 TAAGAGGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.54, C:0.00, G:0.28, T:0.18
Consensus pattern (19 bp):
GAAAAGAGAAATTTAAAGG
Found at i:26589207 original size:21 final size:21
Alignment explanation
Indices: 26589168--26589208 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26589158 AATAATTTGA
** *
26589168 ATAAATTTTATGTATTTTAAT
1 ATAAATTTTATAAAATTTAAT
26589189 ATAAATTTTATAAAATTTAA
1 ATAAATTTTATAAAATTTAA
26589209 AAATTTTCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
ATAAATTTTATAAAATTTAAT
Found at i:26589382 original size:32 final size:31
Alignment explanation
Indices: 26589346--26589420 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
26589336 TTAAATAATA
*
26589346 AATTAAGCCCTCGTAAAATAACTAAAAAAATC
1 AATTAAGCCATCGTAAAATAA-TAAAAAAATC
** *
26589378 AATTAAATCATTGTAAAATAATAAAAAAATC
1 AATTAAGCCATCGTAAAATAATAAAAAAATC
26589409 AATTAAGCCATC
1 AATTAAGCCATC
26589421 CTCACCAATA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 19 0.53
32 17 0.47
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25
Consensus pattern (31 bp):
AATTAAGCCATCGTAAAATAATAAAAAAATC
Found at i:26590552 original size:14 final size:16
Alignment explanation
Indices: 26590521--26590553 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26590511 ATATTTTTTT
26590521 TTAAAATACAATTAAA
1 TTAAAATACAATTAAA
26590537 TTAAAATA-AA-TAAA
1 TTAAAATACAATTAAA
26590551 TTA
1 TTA
26590554 TATATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 2 0.12
16 8 0.47
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
TTAAAATACAATTAAA
Found at i:26596308 original size:11 final size:10
Alignment explanation
Indices: 26596267--26596323 Score: 78
Period size: 11 Copynumber: 5.3 Consensus size: 10
26596257 CCTAAATCCT
26596267 TTCTCTCAAA
1 TTCTCTCAAA
26596277 TTCTCTCCAATA
1 TTCTCT-CAA-A
26596289 TTCTCTCAAA
1 TTCTCTCAAA
26596299 TTCTTCTCAAA
1 TTC-TCTCAAA
26596310 TTCTTCTCAAA
1 TTC-TCTCAAA
26596321 TTC
1 TTC
26596324 CTCTTAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.23
11 27 0.61
12 7 0.16
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (10 bp):
TTCTCTCAAA
Found at i:26596556 original size:16 final size:16
Alignment explanation
Indices: 26596537--26596596 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 16
26596527 GATTTATGCA
26596537 ATTTTAAATAATTTTT
1 ATTTTAAATAATTTTT
26596553 ATTTTATTAGA-AATTTCTTAT
1 ATTTTA--A-ATAA-TT-TT-T
26596574 AATTTTAAATAATTTTT
1 -ATTTTAAATAATTTTT
26596591 ATTTTA
1 ATTTTA
26596597 TGATTTCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 16
0.69 0.00 0.31
Matches are distributed among these distances:
16 12 0.33
17 1 0.03
18 5 0.14
19 6 0.17
20 5 0.14
21 1 0.03
22 6 0.17
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTTTAAATAATTTTT
Found at i:26597532 original size:7 final size:7
Alignment explanation
Indices: 26597520--26597552 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
26597510 TAGTCGATTG
26597520 GTATTTA
1 GTATTTA
26597527 GTATTTA
1 GTATTTA
26597534 GTATTTA
1 GTATTTA
26597541 GTATTTA
1 GTATTTA
26597548 GTATT
1 GTATT
26597553 ATGTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:26602126 original size:126 final size:126
Alignment explanation
Indices: 26601897--26602311 Score: 625
Period size: 126 Copynumber: 3.3 Consensus size: 126
26601887 TCAGGCCAAA
* * *
26601897 CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAAC
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
* * * *
26601962 ATCTTGCTTAAAGTGTTTTTGAAACTATTTGCTTAGAAATGTCTACTCGAAATTATTTTTT
66 ATCCTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAATGTCTTCTCGAAATTATTTTTT
* * * *
26602023 CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGAAAGCTTTTTTCAATACTTTTGCTGACAAAGC
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
* *
26602088 ATCCTGCTTAAAGCGTTTTTGACACTCTTTGCTCAGAAACT-TCTTCTCGAAATTATTTTTT
66 ATCCTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAA-TGTCTTCTCGAAATTATTTTTT
* * * *
26602149 CAGGTGCTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTGGCTGACAAAGC
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
* *
26602214 ATCCTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTTCTTGAAATTATTTTTT
66 ATCCTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAATGTCTTCTCGAAATTATTTTTT
* *
26602275 CAGGAGCTACTGTAGCAAAAGAGTGTCCACATGAGAG
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAG
26602312 TTTTTTTAAA
Statistics
Matches: 259, Mismatches: 28, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
126 258 1.00
127 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (126 bp):
CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
ATCCTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAATGTCTTCTCGAAATTATTTTTT
Found at i:26602545 original size:23 final size:22
Alignment explanation
Indices: 26602514--26602556 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26602504 TTTTTTCTTT
26602514 AAAACCCTAAACCCAAAACCCCC
1 AAAACCCT-AACCCAAAACCCCC
* *
26602537 AAAATCCTAACCCTAAACCC
1 AAAACCCTAACCCAAAACCC
26602557 TAAACCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.47, C:0.44, G:0.00, T:0.09
Consensus pattern (22 bp):
AAAACCCTAACCCAAAACCCCC
Done.