Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44797108
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 921406 characters in sequence are not A, C, G, or T
File 88 of 144
Found at i:26610359 original size:17 final size:17
Alignment explanation
Indices: 26610333--26610371 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
26610323 TTTCAAACAA
*
26610333 TATATTTTATTATTT-AT
1 TATATGTTATT-TTTAAT
26610350 TATATGTTATTTTTAAT
1 TATATGTTATTTTTAAT
26610367 TATAT
1 TATAT
26610372 ATTTGTGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
TATATGTTATTTTTAAT
Found at i:26610374 original size:24 final size:22
Alignment explanation
Indices: 26610337--26610382 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
26610327 AAACAATATA
*
26610337 TTTTATTATTTATTATATGTTAT
1 TTTTATTATATATT-TATGTTAT
*
26610360 TTTTAATTATATATTTGTGTTAT
1 TTTT-ATTATATATTTATGTTAT
26610383 AAATATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
TTTTATTATATATTTATGTTAT
Found at i:26618161 original size:3 final size:3
Alignment explanation
Indices: 26618153--26618201 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
26618143 ATACTAATTA
* * * *
26618153 AAT AAT AAT AAG AAA AAT AAAT AAT AAT AAT GAT AAT AAT AAG AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
26618199 AAT
1 AAT
26618202 TCGAAAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:26619817 original size:44 final size:44
Alignment explanation
Indices: 26619769--26620530 Score: 573
Period size: 44 Copynumber: 17.0 Consensus size: 44
26619759 GTACAGGAGG
* * * * *
26619769 TGTAGTTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGACT
1 TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* *
26619813 TGTAGCTTCAATTTGCTCCACTT-TAACTTCAGGGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCA-TTGCAACTTCAGGGAGATAAGATT
* * *
26619857 TGTAGCTTCAACCTGCTCCATTGCAACTTCAAGGAAATAAGATT
1 TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
*
26619901 TGTCA-TTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
1 TGT-AGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* * *
26619945 TGTAGCTTCAACCTGCTCCATTGCAACTTCAAGGAAATAAGATT
1 TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
*
26619989 TGTCA-TTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
1 TGT-AGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* * *
26620033 TGTAGCTTCAACCTGCTCCATTGCAACTTCAAGGAAATAAGATT
1 TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
*
26620077 TGTCA-TTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
1 TGT-AGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
*** * ** * * * ** * *
26620121 TGTAGCTTGTGGCTTTAATCCCTTCCGACTTCAAAGAAATAAGACTCGCAC
1 TGTAGC-T-TCAATCTGCTCCATTGCAACTTCAGGGAGATAAGA-T----T
* * * * * *
26620172 AGTAGATTTAATCCGAC-CCATTGCAACTTCAGAGG-TATAGGATT
1 TGTAGCTTCAATCTG-CTCCATTGCAACTTCAG-GGAGATAAGATT
* * * * * *
26620216 TGTCGCTTGAATTTACTCCACTGCAACTTTAGGGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* * * * *
26620260 TGTGACTTGCAACTTTAATCTGTTCCACTGCAACTTCAGGGATATTAGATT
1 TGT-A---G---CTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* * * * * * *
26620311 TACTATCTTCAATCTACTCCACTACAACTTCAAGAAGATAAGATT
1 T-GTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* * * * * * * * *
26620356 TGTAACTTTAATTTCCTCTACTACAACTTCAGGAAGATAAGGTT
1 TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* * * * * *
26620400 TGTAGCTTTAATTTGTTCTACTGCAACTTCAGAGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* * *
26620444 TGCTATCTTCAATCTGCTCCATTGCAACTTCAGAGAGATAAGGTT
1 TG-TAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
* * * * *
26620489 TGTGGCTTTAATTTGCTCCACTACAACTTCAGGGAGATAAGA
1 TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGA
26620531 ATTGCCACGA
Statistics
Matches: 570, Mismatches: 120, Indels: 56
0.76 0.16 0.08
Matches are distributed among these distances:
43 8 0.01
44 403 0.71
45 74 0.13
46 23 0.04
47 1 0.00
48 2 0.00
49 18 0.03
50 2 0.00
51 38 0.07
52 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
TGTAGCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
Found at i:26620569 original size:367 final size:366
Alignment explanation
Indices: 26619910--26620585 Score: 803
Period size: 367 Copynumber: 1.8 Consensus size: 366
26619900 TTGTCATTTC
* * * * *
26619910 AATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAACCTGCTCCATTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCTAGCTTCAACCTACTCCACTACAACTTC
* * * * *
26619975 AAGGAAATAAGATTTGTCATTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAGCT
66 AAGGAAATAAGATTTGTAATTTCAATCTCCTCCACTACAACTTCAGGAAGATAAGATTTGTAGCT
*
26620040 TCAACCTGCTCCATTGCAACTTCAAGGAAATAAGATTTGTCATTTCAATCTGCTCCATTGCAACT
131 TCAACCTGCTCCACTGCAACTTCAAGGAAATAAGATTTGTCATTTCAATCTGCTCCATTGCAACT
* ** * * *
26620105 TCAGGGAGATAAGATTTGTAGCTTGTGGCTTTAATCCCTTCCGACTTCAAAGAAATAAGACTCGC
196 TCAGAGAGATAAGATTTGTAGCTTGTGAATTTAATCCCTTACAACTTCAAAGAAATAAGAATCGC
* *
26620170 ACAGTAGATTTAATCCGACCCATTGCAACTTCAGAGGTATAGGATTTGTCGCTTGAATTTACTCC
261 ACAGTAGATTCAATCCGACCCACTGCAACTTCAGAGGTATAGGATTTGTCGCTTGAATTTACTCC
26620235 ACTGCAACTTTAGGGAGATAAGATTTGTGACTTGCAACTTT
326 ACTGCAACTTTAGGGAGATAAGATTTGTGACTTGCAACTTT
* * * * *
26620276 AATCTGTTCCACTGCAACTTCAGGGATATTAGATTTACTATCTTCAATCTACTCCACTACAACTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-CTAGCTTCAACCTACTCCACTACAACTT
* * *
26620341 CAA-GAAGATAAGATTTGTAACTTT-AATTTCCTCTACTACAACTTCAGGAAGATAAGGTTTGTA
65 CAAGGAA-ATAAGATTTGTAA-TTTCAATCTCCTCCACTACAACTTCAGGAAGATAAGATTTGTA
* ** * * *
26620404 GCTTTAATTTGTTCTACTGCAACTTC-AGAGAGATAAGATTTG-CTATCTTCAATCTGCTCCATT
128 GCTTCAACCTGCTCCACTGCAACTTCAAG-GAAATAAGATTTGTC-AT-TTCAATCTGCTCCATT
* * ** ** *
26620467 GCAACTTCAGAGAGATAAGGTTTGTGGCTT-T-AATTTGCTCCAC-TACAACTTCAGGGAGATAA
190 GCAACTTCAGAGAGATAAGATTTGTAGCTTGTGAATTTAATCC-CTTACAACTTCAAAGAAATAA
* * * *
26620529 GAATTGC-CACG-ATGACTTCAATCCGTCCCACTGTAACTTCAGGGGTATAGGATTTGT
254 GAATCGCACA-GTA-GA-TTCAATCCGACCCACTGCAACTTCAGAGGTATAGGATTTGT
26620586 GGTTTTACTG
Statistics
Matches: 256, Mismatches: 44, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
365 3 0.01
366 66 0.26
367 141 0.55
368 46 0.18
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (366 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCTAGCTTCAACCTACTCCACTACAACTTC
AAGGAAATAAGATTTGTAATTTCAATCTCCTCCACTACAACTTCAGGAAGATAAGATTTGTAGCT
TCAACCTGCTCCACTGCAACTTCAAGGAAATAAGATTTGTCATTTCAATCTGCTCCATTGCAACT
TCAGAGAGATAAGATTTGTAGCTTGTGAATTTAATCCCTTACAACTTCAAAGAAATAAGAATCGC
ACAGTAGATTCAATCCGACCCACTGCAACTTCAGAGGTATAGGATTTGTCGCTTGAATTTACTCC
ACTGCAACTTTAGGGAGATAAGATTTGTGACTTGCAACTTT
Found at i:26630840 original size:68 final size:68
Alignment explanation
Indices: 26630764--26630903 Score: 264
Period size: 68 Copynumber: 2.1 Consensus size: 68
26630754 AACCCATTCT
*
26630764 CCCC-CCTCCCCCCCCCATTTTTTTTAATATTTCCCTCTCAAAATTTTACTCCTCCCATTTATTC
1 CCCCACCTCCCCCCCCCAATTTTTTTAATATTTCCCTCTCAAAATTTTACTCCTCCCATTTATTC
26630828 CCC
66 CCC
26630831 CCCCACCTCCCCCCCCCAATTTTTTTAATATTTCCCTCTCAAAATTTTACTCCTCCCATTTATTC
1 CCCCACCTCCCCCCCCCAATTTTTTTAATATTTCCCTCTCAAAATTTTACTCCTCCCATTTATTC
26630896 CCC
66 CCC
26630899 CCCCA
1 CCCCA
26630904 AAAAAAAAAA
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
67 4 0.06
68 67 0.94
ACGTcount: A:0.18, C:0.46, G:0.00, T:0.36
Consensus pattern (68 bp):
CCCCACCTCCCCCCCCCAATTTTTTTAATATTTCCCTCTCAAAATTTTACTCCTCCCATTTATTC
CCC
Found at i:26631267 original size:84 final size:84
Alignment explanation
Indices: 26631171--26631381 Score: 268
Period size: 84 Copynumber: 2.5 Consensus size: 84
26631161 GATATAGATC
* *
26631171 TTCCATATATGTTATTCTCTTTCCTTTACCATATTTGATTTTCTATTTTCCCTAAAATATTAAAT
1 TTCCACATATGTTATTCTCTTTCCTTTACCATATTTGATTTTCTATTTTCCATAAAATATTAAAT
* *
26631236 TCCCTTTTATAT-ATCTATT
66 TCCCTTTCAGATCA-CTATT
* * * *
26631255 TTCCACATATGTTATTCTCTTTCCTTTGCCATGTTTGATTTCCTATTTTCCATAAAATATTCAAT
1 TTCCACATATGTTATTCTCTTTCCTTTACCATATTTGATTTTCTATTTTCCATAAAATATTAAAT
26631320 TCCCTTTCAGATCACTATT
66 TCCCTTTCAGATCACTATT
* *
26631339 TT--ACATAGTTGTTATTCTCTTT-CTTTTCTCATATTTGACTTTC
1 TTCCACATA--TGTTATTCTCTTTCCTTTAC-CATATTTGATTTTC
26631382 CTTCTCGTCT
Statistics
Matches: 111, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
82 5 0.05
83 5 0.05
84 100 0.90
85 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.05, T:0.52
Consensus pattern (84 bp):
TTCCACATATGTTATTCTCTTTCCTTTACCATATTTGATTTTCTATTTTCCATAAAATATTAAAT
TCCCTTTCAGATCACTATT
Found at i:26636174 original size:28 final size:28
Alignment explanation
Indices: 26636143--26636204 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
26636133 CTGATGATAG
*
26636143 TAAACAAGTTTCAATTGCATACCATGCA
1 TAAACAAGTTTCAACTGCATACCATGCA
26636171 TAAACAAGTTTCAACTGCATACCATGCA
1 TAAACAAGTTTCAACTGCATACCATGCA
26636199 TAAACA
1 TAAACA
26636205 GTAATAATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26
Consensus pattern (28 bp):
TAAACAAGTTTCAACTGCATACCATGCA
Found at i:26644672 original size:59 final size:58
Alignment explanation
Indices: 26644609--26644759 Score: 169
Period size: 59 Copynumber: 2.6 Consensus size: 58
26644599 CTTTTGGCTT
*
26644609 TAACTTTTGCTTAAGCCATCCAATGAAGGATTTTCAACTTAACGAG-TATTTTCTCTCAC
1 TAACTTTTGCTTAAACCATCCAATGAAGGATTTTCAACTTAACGAGCT-TTTT-TCTCAC
* * *** * *
26644668 TAACTTTTTCTTAAACCATCAAATGAAGGATTTTTTGCTTAATGAGCTTTTTTTTCAC
1 TAACTTTTGCTTAAACCATCCAATGAAGGATTTTCAACTTAACGAGCTTTTTTCTCAC
* ** *
26644726 TAAATTTTGCTTAAACTGTCCAATGTAGGATTTT
1 TAACTTTTGCTTAAACCATCCAATGAAGGATTTT
26644760 AAGGTTAATA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
58 33 0.43
59 43 0.56
60 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.42
Consensus pattern (58 bp):
TAACTTTTGCTTAAACCATCCAATGAAGGATTTTCAACTTAACGAGCTTTTTTCTCAC
Found at i:26644768 original size:58 final size:57
Alignment explanation
Indices: 26644613--26644778 Score: 154
Period size: 58 Copynumber: 2.9 Consensus size: 57
26644603 TGGCTTTAAC
* * ** * *
26644613 TTTTGCTTAAGCCATCCAATGAAGGATTTTCAA-CTTAACGAGTATTTTCTCTCACTAAC
1 TTTTGCTTAAACCATCAAATGAAGGATTTT-AAGCTTAATAAGT-TTTT-TTTCACTAAA
* ** *
26644672 TTTTTCTTAAACCATCAAATGAAGGATTTTTTGCTTAATGAGCTTTTTTTTCACTAAA
1 TTTTGCTTAAACCATCAAATGAAGGATTTTAAGCTTAATAAG-TTTTTTTTCACTAAA
** * * *
26644730 TTTTGCTTAAACTGTCCAATGTAGGATTTTAAGGTTAATAAGTTTTTTT
1 TTTTGCTTAAACCATCAAATGAAGGATTTTAAGCTTAATAAGTTTTTTT
26644779 GTTTTTGCCC
Statistics
Matches: 88, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
57 7 0.08
58 41 0.47
59 39 0.44
60 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (57 bp):
TTTTGCTTAAACCATCAAATGAAGGATTTTAAGCTTAATAAGTTTTTTTTCACTAAA
Found at i:26645866 original size:13 final size:13
Alignment explanation
Indices: 26645825--26645874 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
26645815 TTAGCAATGA
26645825 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
* *
26645838 TCTAGAAAAGTGC
1 TTTTGAAAAGTGC
*
26645851 TTTTGAAAAGTAC
1 TTTTGAAAAGTGC
26645864 TTTTGAAAAGT
1 TTTTGAAAAGT
26645875 TTGGTTTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:26648334 original size:11 final size:11
Alignment explanation
Indices: 26648314--26648349 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
26648304 AATTTTCTGA
26648314 TTTTCGCTCAT
1 TTTTCGCTCAT
*
26648325 TTTTCACTCAT
1 TTTTCGCTCAT
26648336 TTTTCGCTCAT
1 TTTTCGCTCAT
26648347 TTT
1 TTT
26648350 ACTCCTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.11, C:0.25, G:0.06, T:0.58
Consensus pattern (11 bp):
TTTTCGCTCAT
Found at i:26650039 original size:18 final size:18
Alignment explanation
Indices: 26650018--26650065 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
26650008 AGTGCATAAT
*
26650018 AAAACAAAAC-AAA-CAA
1 AAAAAAAAACAAAATCAA
*
26650034 AAAAAAAAACAAAATCCA
1 AAAAAAAAACAAAATCAA
26650052 AAAAAAAAACAAAA
1 AAAAAAAAACAAAA
26650066 AATGAAAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.32
17 3 0.11
18 16 0.57
ACGTcount: A:0.83, C:0.15, G:0.00, T:0.02
Consensus pattern (18 bp):
AAAAAAAAACAAAATCAA
Found at i:26650073 original size:19 final size:19
Alignment explanation
Indices: 26650018--26650082 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
26650008 AGTGCATAAT
*
26650018 AAAACAAAACAAACAAAAAA
1 AAAACAAAA-AATCAAAAAA
*
26650038 AAAA-ACAAAATCCAAAAAA
1 AAAACAAAAAAT-CAAAAAA
* *
26650057 AAAACAAAAAATGAAAACA
1 AAAACAAAAAATCAAAAAA
26650076 AAAACAA
1 AAAACAA
26650083 TAATAAAAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
18 2 0.05
19 26 0.68
20 10 0.26
ACGTcount: A:0.82, C:0.14, G:0.02, T:0.03
Consensus pattern (19 bp):
AAAACAAAAAATCAAAAAA
Found at i:26650138 original size:12 final size:13
Alignment explanation
Indices: 26650107--26650142 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
26650097 AGTAACAAAC
*
26650107 AAAAGTAAAATTG
1 AAAATTAAAATTG
26650120 AAAATTAAAATTG
1 AAAATTAAAATTG
26650133 -AAATTAAAAT
1 AAAATTAAAAT
26650143 AAATAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (13 bp):
AAAATTAAAATTG
Found at i:26650336 original size:17 final size:18
Alignment explanation
Indices: 26650314--26650347 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
26650304 ACAGCCCAGG
26650314 ACACGCCCGTGT-GTCAC
1 ACACGCCCGTGTCGTCAC
26650331 ACACGCCCGTGTCGTCA
1 ACACGCCCGTGTCGTCA
26650348 GGCCGTGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.18
Consensus pattern (18 bp):
ACACGCCCGTGTCGTCAC
Found at i:26652482 original size:29 final size:29
Alignment explanation
Indices: 26652450--26652522 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
26652440 TCGATTGTCG
*
26652450 ACTATGAAAAGGGATGGTGATGACCATCA
1 ACTATGAAAAGGGATGGTGATGAACATCA
*
26652479 ACTATGAAAAGGGATGGTGATGAACGTCA
1 ACTATGAAAAGGGATGGTGATGAACATCA
*
26652508 AATATGAAAAGGGAT
1 ACTATGAAAAGGGAT
26652523 AGTTTCGACT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.41, C:0.10, G:0.29, T:0.21
Consensus pattern (29 bp):
ACTATGAAAAGGGATGGTGATGAACATCA
Found at i:26663935 original size:25 final size:27
Alignment explanation
Indices: 26663879--26663935 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 27
26663869 ATAAACATTA
*
26663879 TATTAAATTTAATATTAATATAATCAC
1 TATTAAATTTAATATTAATAAAATCAC
26663906 T-TT-AATATTAA-ATTAATAAAAT-AC
1 TATTAAAT-TTAATATTAATAAAATCAC
26663930 TATTAA
1 TATTAA
26663936 GATAAGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
24 3 0.12
25 15 0.58
26 7 0.27
27 1 0.04
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (27 bp):
TATTAAATTTAATATTAATAAAATCAC
Found at i:26679521 original size:45 final size:45
Alignment explanation
Indices: 26679420--26680233 Score: 271
Period size: 44 Copynumber: 17.8 Consensus size: 45
26679410 TAGCAAACCG
* * * * * * *
26679420 TATCTCCCTAAAGTTGCAGCGGAGTAGGTTGAAGTTA-CTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
* * *
26679464 TATCTCCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
* * * * * ***
26679509 TATTTCCCTGAAGTTGTAGTGGAACATATTAAAGCTATAAATTATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-GCGA-ATCT
* * * * *
26679560 TATCTCTCTGAAGTTGCAGTTGAGCAGA-T---CATATCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
* ** * * * *
26679601 TATCTCCCTAAAGTTGCAGTAAAGCAGTTTGAAGTTA-CTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
*** *
26679645 TATCTTTTTGAAGTTGTAGTGGAGCAGATTGAAGATAGCGAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
* * * *
26679690 TATTTCCCTGAAGTTACAGTGGAACAGATTGAAGCTATATATTAC-AGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG----ATA--GCGA-ATCT
* * * * * * * *
26679741 TATCTCTCTAAAGTTACAGTAGAGCAGA-T---CATATCAAACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
** * * * * * *
26679782 TATCTCCCTGAAGTTGCAACGAAGCAGGTTAAAGTTA-CTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
* * ** *
26679826 TATCTCCCTGAAGTTGCTGTGGAGCAGACTGAAGGCAACGAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
* * * * * *
26679871 TATTTCCCTGGCA-TTGCAGTGGAACAAATTAAAGCTACAAGTTATGGTGAATCT
1 TATCTCCCT-GAAGTTGCAGTGGAGCAGATT---G----AAG--ATAGCGAATCT
*
26679925 TATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCATTATG-G-ATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--A-TA-GCGAATCT
* * * ** * *
26679972 TATCTTCCTAAAGTTGCAG-GGAAGTAGATCAAAGATAGCAAACCT
1 TATCTCCCTGAAGTTGCAGTGG-AGCAGATTGAAGATAGCGAATCT
* * * * * *
26680017 TATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAGTTA-C-AAGCCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAA-TCT
* * * * * * * *
26680061 TATCTCCCTGAAGTTGCAGTGGAACGGGTTAAAAATAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AGCGAATCT
* * *
26680107 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACTGGCTACAAACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAG---CGAATCT
** * * * * ** * *
26680156 TATCTCTATGAAGTTGTAGTAGAGTAGGTTGAAGCCA-CAAACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
* *
26680200 TATCTCTCTGAAGTTGCAGTGGAGCGGATTGAAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
26680234 GAACACTTTC
Statistics
Matches: 560, Mismatches: 160, Indels: 100
0.68 0.20 0.12
Matches are distributed among these distances:
41 51 0.09
42 5 0.01
43 7 0.01
44 163 0.29
45 127 0.23
46 37 0.07
47 38 0.07
48 3 0.01
49 37 0.07
50 4 0.01
51 55 0.10
52 3 0.01
53 2 0.00
54 28 0.05
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (45 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCT
Found at i:26679713 original size:181 final size:181
Alignment explanation
Indices: 26679404--26679953 Score: 726
Period size: 181 Copynumber: 3.0 Consensus size: 181
26679394 GATGGATTGA
* * * *
26679404 AGATCATAGCAAACCGTATCTCCCTAAAGTTGCAGCGGAGTAGGTTGAAGTTACTAGTCTTATCT
1 AGATCATATCAAACCTTATCTCCCTAAAGTTGCAGCGAAGCAGGTTGAAGTTACTAGTCTTATCT
*
26679469 CCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAAC
66 CCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
* *
26679534 ATATTAAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTTGAGC
131 AAATTAAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
* ** *
26679585 AGATCATATCAAATCTTATCTCCCTAAAGTTGCAGTAAAGCAGTTTGAAGTTACTAGTCTTATCT
1 AGATCATATCAAACCTTATCTCCCTAAAGTTGCAGCGAAGCAGGTTGAAGTTACTAGTCTTATCT
** * *
26679650 TTTTGAAGTTGTAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGGAAC
66 CCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
* * * * * *
26679715 AGATTGAAGCTATATATTACAGATCTTATCTCTCTAAAGTTACAGTAGAGC
131 AAATTAAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
* * *
26679766 AGATCATATCAAACCTTATCTCCCTGAAGTTGCAACGAAGCAGGTTAAAGTTACTAGTCTTATCT
1 AGATCATATCAAACCTTATCTCCCTAAAGTTGCAGCGAAGCAGGTTGAAGTTACTAGTCTTATCT
* ** * *
26679831 CCCTGAAGTTGCT-GTGGAGCAGACTGAAGGCAACGAATCTTATTTCCCTGGCA-TTGCAGTGGA
66 CCTTGAAGTTG-TAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCT-GAAGTTGCAGTGGA
* * * * * *
26679894 ACAAATTAAAGCTACAAGTTATGGTGAATCTTATCTCCCTGAAGTTGTAGTGGAGC
129 ACAAATTAAAGCTATAAATTAT--AG-ATCTTATCTCTCTGAAGTTGCAGTAGAGC
26679950 AGAT
1 AGAT
26679954 TGAAGCCATT
Statistics
Matches: 316, Mismatches: 48, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
181 284 0.90
182 3 0.01
183 1 0.00
184 28 0.09
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (181 bp):
AGATCATATCAAACCTTATCTCCCTAAAGTTGCAGCGAAGCAGGTTGAAGTTACTAGTCTTATCT
CCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
AAATTAAAGCTATAAATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
Found at i:26681587 original size:9 final size:9
Alignment explanation
Indices: 26681573--26681663 Score: 52
Period size: 8 Copynumber: 10.6 Consensus size: 9
26681563 AATATTATTT
26681573 TAAAATATA
1 TAAAATATA
26681582 TAAAATATA
1 TAAAATATA
*
26681591 -AAAGTAT-
1 TAAAATATA
*
26681598 GAAAATAATA
1 TAAAAT-ATA
*
26681608 TATAAA-ATC
1 TA-AAATATA
26681617 TAAAA-AT-
1 TAAAATATA
26681624 TAAAATATA
1 TAAAATATA
*
26681633 T-AAATTTA
1 TAAAATATA
*
26681641 AAAAAT-TA
1 TAAAATATA
*
26681649 TAAAAAAGTA
1 TAAAATA-TA
26681659 TAAAA
1 TAAAA
26681664 AAGTATACAC
Statistics
Matches: 65, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
7 5 0.08
8 29 0.45
9 20 0.31
10 8 0.12
11 3 0.05
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (9 bp):
TAAAATATA
Found at i:26681591 original size:7 final size:7
Alignment explanation
Indices: 26681579--26681643 Score: 53
Period size: 7 Copynumber: 9.1 Consensus size: 7
26681569 ATTTTAAAAT
26681579 ATATAAA
1 ATATAAA
26681586 ATATAAA
1 ATATAAA
*
26681593 AGTATGAA
1 A-TATAAA
*
26681601 A-ATAAT
1 ATATAAA
26681607 ATATAAA
1 ATATAAA
*
26681614 ATCTAAA
1 ATATAAA
26681621 A-ATTAAA
1 ATA-TAAA
26681628 ATATATAA
1 ATATA-AA
*
26681636 ATTTAAA
1 ATATAAA
26681643 A
1 A
26681644 AATTATAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
6 4 0.09
7 29 0.63
8 13 0.28
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (7 bp):
ATATAAA
Found at i:26681631 original size:21 final size:21
Alignment explanation
Indices: 26681573--26681644 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
26681563 AATATTATTT
26681573 TAAAATATATAAAATATAAAAGTA
1 TAAAA-AT-TAAAATATAAAA-TA
* * *
26681597 TGAAAA-TAATATATAAAATC
1 TAAAAATTAAAATATAAAATA
*
26681617 TAAAAATTAAAATATATAAATT
1 TAAAAATTAAAATATA-AAATA
26681639 TAAAAA
1 TAAAAA
26681645 ATTATAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 6 0.15
21 19 0.47
22 10 0.25
23 1 0.03
24 4 0.10
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (21 bp):
TAAAAATTAAAATATAAAATA
Found at i:26681654 original size:10 final size:10
Alignment explanation
Indices: 26681639--26681670 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
26681629 TATATAAATT
*
26681639 TAAAAAATTA
1 TAAAAAAGTA
26681649 TAAAAAAGTA
1 TAAAAAAGTA
26681659 TAAAAAAGTA
1 TAAAAAAGTA
26681669 TA
1 TA
26681671 CACTCAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (10 bp):
TAAAAAAGTA
Found at i:26681729 original size:25 final size:26
Alignment explanation
Indices: 26681694--26681755 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
26681684 TAACATGCCA
*
26681694 ATTATAAAAAATAAAAA-TATAAAA-
1 ATTATATAAAATAAAAATTATAAAAC
26681718 ATTTATATAAAATAAAAATTATAAAAC
1 A-TTATATAAAATAAAAATTATAAAAC
26681745 ATTATATAAAA
1 ATTATATAAAA
26681756 AATAATTCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
24 1 0.03
25 15 0.44
26 17 0.50
27 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
ATTATATAAAATAAAAATTATAAAAC
Found at i:26681750 original size:10 final size:9
Alignment explanation
Indices: 26681693--26681755 Score: 55
Period size: 10 Copynumber: 7.2 Consensus size: 9
26681683 ATAACATGCC
26681693 AATTATAAA
1 AATTATAAA
26681702 AA--ATAAA
1 AATTATAAA
26681709 AA-TATAAA
1 AATTATAAA
*
26681717 AATTTATATA
1 AA-TTATAAA
26681727 AA--ATAAA
1 AATTATAAA
26681734 AATTATAAA
1 AATTATAAA
26681743 ACATTATATAA
1 A-ATTATA-AA
26681754 AA
1 AA
26681756 AATAATTCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
7 13 0.29
8 7 0.16
9 8 0.18
10 14 0.31
11 3 0.07
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (9 bp):
AATTATAAA
Found at i:26681762 original size:25 final size:25
Alignment explanation
Indices: 26681696--26681762 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
26681686 ACATGCCAAT
*
26681696 TATAAAAAATAAAAATATAAAAATTTA
1 TATAAAAAAT--AATTATAAAAATTTA
*
26681723 TATAAAATAAAAATTATAAAACA-TTA
1 TATAAAA-AATAATTATAAAA-ATTTA
26681749 TATAAAAAATAATT
1 TATAAAAAATAATT
26681763 CAAAAATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
25 6 0.17
26 19 0.54
27 8 0.23
28 2 0.06
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (25 bp):
TATAAAAAATAATTATAAAAATTTA
Found at i:26681820 original size:18 final size:18
Alignment explanation
Indices: 26681799--26681845 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
26681789 TTTAAAGATT
*
26681799 AAAATTTTATAAAATTAC
1 AAAATTTTACAAAATTAC
*
26681817 AAAATATTT-CAAAATTTC
1 AAAAT-TTTACAAAATTAC
*
26681835 AAAAATTTACA
1 AAAATTTTACA
26681846 TTTTCAGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATTTTACAAAATTAC
Found at i:26681942 original size:20 final size:21
Alignment explanation
Indices: 26681878--26681943 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 21
26681868 TTAAAAGTAT
26681878 ATTTTCAAAAAAAATATATATTTAA
1 ATTTT-AAAAAAAATATATA---AA
* * *
26681903 ATTTTAAAGAAAGTCT-TAAA
1 ATTTTAAAAAAAATATATAAA
26681923 ATTTTAAAAAAAAT-TATAAA
1 ATTTTAAAAAAAATATATAAA
26681943 A
1 A
26681944 ATCAAATTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
19 1 0.03
20 19 0.54
23 2 0.06
24 8 0.23
25 5 0.14
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (21 bp):
ATTTTAAAAAAAATATATAAA
Found at i:26694288 original size:50 final size:50
Alignment explanation
Indices: 26694202--26694340 Score: 125
Period size: 50 Copynumber: 2.8 Consensus size: 50
26694192 TATTTCCAGT
* * * * * ** * * *
26694202 GCCATATCTCAGATATGGTCCTACATGGGAGTTCTCATATTGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGATGCCCAC
* ** ** *
26694252 GCCATGTCCGAGACATGGTCTTATGGGGGACCTCTCACCTCGATGCCTAC
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGATGCCCAC
*
26694302 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATA
26694341 ATCTCAATGA
Statistics
Matches: 67, Mismatches: 22, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGATGCCCAC
Found at i:26694771 original size:30 final size:30
Alignment explanation
Indices: 26694737--26694794 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26694727 CCTTGACTCG
26694737 AACTTTTGAAAAATTACAATTGTGCCCCTA
1 AACTTTTGAAAAATTACAATTGTGCCCCTA
* * * *
26694767 AACTTTTGCATAATTACACTTTTGCCCC
1 AACTTTTGAAAAATTACAATTGTGCCCC
26694795 AAAGCGCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (30 bp):
AACTTTTGAAAAATTACAATTGTGCCCCTA
Found at i:26702180 original size:46 final size:46
Alignment explanation
Indices: 26702079--26702326 Score: 412
Period size: 46 Copynumber: 5.5 Consensus size: 46
26702069 TACGTATGAT
*
26702079 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
26702122 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
26702168 CACTTATCACTTTGTCACTTGATCAGATAAGTGCAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
**
26702214 CACTTATCACTTTGTCACTTGATCAGATAAGTCCAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* * *
26702260 CACTTATCACTTTGTCACTTGATTAGATAAGTGTAGCCAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
26702306 CACTTATCACTTTGTCACTTG
1 CACTTATCACTTTGTCACTTG
26702327 TCACTGATCA
Statistics
Matches: 194, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
43 10 0.05
44 5 0.03
45 20 0.10
46 159 0.82
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:26710399 original size:8 final size:8
Alignment explanation
Indices: 26710386--26710413 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
26710376 TCCAAGGGTC
26710386 AAATTGTA
1 AAATTGTA
26710394 AAATTGTA
1 AAATTGTA
26710402 AAATTGTA
1 AAATTGTA
26710410 AAAT
1 AAAT
26710414 GTTATAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.36
Consensus pattern (8 bp):
AAATTGTA
Found at i:26711361 original size:45 final size:45
Alignment explanation
Indices: 26711241--26711367 Score: 164
Period size: 45 Copynumber: 2.8 Consensus size: 45
26711231 TATGACGTAA
* * * **
26711241 AATGAATAAGACCATGGTAGAGAGATACTATAACATCAAATCGGG
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCATCAAATCGGG
* * * *
26711286 AATGAATAAGATCATGGTTGAAAGACACCATGGCATCTAGTCGGG
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCATCAAATCGGG
*
26711331 AATGAATAAGACCATGGTTGAAAAATACCATGGCATC
1 AATGAATAAGACCATGGTTGAAAGATACCATGGCATC
26711368 CTTCAACCAT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (45 bp):
AATGAATAAGACCATGGTTGAAAGATACCATGGCATCAAATCGGG
Found at i:26712438 original size:19 final size:19
Alignment explanation
Indices: 26712395--26712438 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
26712385 CCTTGTTTCC
**
26712395 CAAATTTTCAATTTTTTTT
1 CAAATTTTCAATTTTACTT
*
26712414 CTAAATTTTCTATTTTACTT
1 C-AAATTTTCAATTTTACTT
26712434 CAAAT
1 CAAAT
26712439 CGATCTCGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.57
Consensus pattern (19 bp):
CAAATTTTCAATTTTACTT
Found at i:26717237 original size:45 final size:44
Alignment explanation
Indices: 26717144--26717265 Score: 133
Period size: 45 Copynumber: 2.7 Consensus size: 44
26717134 AGGGAATGAC
*
26717144 TAAGACCATAGTTGAAAGACACTATGGCA-CTATACCAAAATTACG
1 TAAGACCATAGTTGAAAGACATTATGGCATC-ATACCAAAA-TACG
* *
26717189 TAAGACCATAGTTGAAAGAAATTATGGCATCATATCAAAA-ACGAG
1 TAAGACCATAGTTGAAAGACATTATGGCATCATACCAAAATAC--G
* *
26717234 TAAGA-CAGTAGCTGAAAGACGTTATGGCATCA
1 TAAGACCA-TAGTTGAAAGACATTATGGCATCA
26717266 CGATTCTAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
43 2 0.03
44 2 0.03
45 62 0.93
46 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (44 bp):
TAAGACCATAGTTGAAAGACATTATGGCATCATACCAAAATACG
Found at i:26717283 original size:45 final size:46
Alignment explanation
Indices: 26717228--26717355 Score: 183
Period size: 45 Copynumber: 2.8 Consensus size: 46
26717218 TCATATCAAA
* *
26717228 AACGAGTAAGA-CAGTAGCTGAAAGACGTTATGGCATCACGATTCT
1 AACGAATAAGACCAGTAGCTGAAAGATGTTATGGCATCACGATTCT
*
26717273 AATGAATAAGACCAG-AGCTGAAAGATGTTATGGCATCACGATTCT
1 AACGAATAAGACCAGTAGCTGAAAGATGTTATGGCATCACGATTCT
*
26717318 AACGAGTAAGACCA-TAGCTGAAAGATGCTT-TGGCATCA
1 AACGAATAAGACCAGTAGCTGAAAGATG-TTATGGCATCA
26717356 TGAATCAGAC
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
45 70 0.93
46 5 0.07
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (46 bp):
AACGAATAAGACCAGTAGCTGAAAGATGTTATGGCATCACGATTCT
Found at i:26717378 original size:45 final size:44
Alignment explanation
Indices: 26717189--26717387 Score: 165
Period size: 45 Copynumber: 4.4 Consensus size: 44
26717179 CAAAATTACG
* ** * *
26717189 TAAGACCATAGTTGAAAGAAATTATGGCATCA--TATCAAAAACGA
1 TAAGACCATAGCTGAAAGATGTTATGGCATCACGAATC--TAACGA
* * *
26717233 GTAAGA-CAGTAGCTGAAAGACGTTATGGCATCACGATTCTAATGAA
1 -TAAGACCA-TAGCTGAAAGATGTTATGGCATCACGAATCTAACG-A
* *
26717279 TAAGACCAGAGCTGAAAGATGTTATGGCATCACGATTCTAACGA
1 TAAGACCATAGCTGAAAGATGTTATGGCATCACGAATCTAACGA
*
26717323 GTAAGACCATAGCTGAAAGATGCTT-TGGCATCATGAATC-AGACGGA
1 -TAAGACCATAGCTGAAAGATG-TTATGGCATCACGAATCTA-AC-GA
* *
26717369 TAAGTCCATAGTTGAAAGA
1 TAAGACCATAGCTGAAAGA
26717388 CACTATGGCA
Statistics
Matches: 130, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
44 4 0.03
45 117 0.90
46 7 0.05
47 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (44 bp):
TAAGACCATAGCTGAAAGATGTTATGGCATCACGAATCTAACGA
Found at i:26717395 original size:90 final size:90
Alignment explanation
Indices: 26717189--26717403 Score: 215
Period size: 90 Copynumber: 2.4 Consensus size: 90
26717179 CAAAATTACG
*
26717189 TAAGACCATAGTTGAAAGAAATTATGGCATCA-TATCAAAAACGAGTAAGACAGTAGCTGAAAGA
1 TAAGACCATAGTTGAAAGAAATTATGGCATCACGATC-AAAACGAGTAAGACAGTAGCTGAAAGA
* *
26717253 CGTTATGGCATCACGATTCTAATGAA
65 CGTTATGGCATCACGAATCTAACGAA
* * ** *
26717279 TAAGACCAGAGCTGAAAGATGTTATGGCATCACGATTC-TAACGAGTAAGACCA-TAGCTGAAAG
1 TAAGACCATAGTTGAAAGAAATTATGGCATCACGA-TCAAAACGAGTAAGA-CAGTAGCTGAAAG
* * *
26717342 ATGCTT-TGGCATCATGAATC-AGACGGA
64 ACG-TTATGGCATCACGAATCTA-ACGAA
* * * *
26717369 TAAGTCCATAGTTGAAAGACACTATGGCAACACGA
1 TAAGACCATAGTTGAAAGAAATTATGGCATCACGA
26717404 CGTAAAATGA
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
89 1 0.01
90 94 0.92
91 5 0.05
92 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (90 bp):
TAAGACCATAGTTGAAAGAAATTATGGCATCACGATCAAAACGAGTAAGACAGTAGCTGAAAGAC
GTTATGGCATCACGAATCTAACGAA
Found at i:26717432 original size:46 final size:45
Alignment explanation
Indices: 26717381--26717488 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
26717371 AGTCCATAGT
26717381 TGAAAGACACTATGGCAAC-ACGACGTAAAATGAATAAGACCATGGA
1 TGAAAGACACTATGGCAACTA-GACG-AAAATGAATAAGACCATGGA
* * * ** *
26717427 TGAAAGACACTATGACATCTAGTCGGGAATGAATAAGACCATGGT
1 TGAAAGACACTATGGCAACTAGACGAAAATGAATAAGACCATGGA
* *
26717472 TGAAAAACACCATGGCA
1 TGAAAGACACTATGGCA
26717489 TCCTTCAACC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
45 31 0.60
46 20 0.38
47 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.18
Consensus pattern (45 bp):
TGAAAGACACTATGGCAACTAGACGAAAATGAATAAGACCATGGA
Found at i:26719570 original size:54 final size:54
Alignment explanation
Indices: 26719506--26719608 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 54
26719496 TTGGCGACAC
* *
26719506 GACCATGTGACCCTAAGATACACAGACTCAAGCTGTTACATGGTTTGGCTATAG
1 GACCATGTGACCCTAAGATACAAAGACTCAAGCTGTTACACGGTTTGGCTATAG
* * * * *
26719560 GACCTTGTGACCCTGAGATACAAAGACTTAGGTTGTTACACGGTTTGGC
1 GACCATGTGACCCTAAGATACAAAGACTCAAGCTGTTACACGGTTTGGC
26719609 CACACAACTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (54 bp):
GACCATGTGACCCTAAGATACAAAGACTCAAGCTGTTACACGGTTTGGCTATAG
Found at i:26721369 original size:12 final size:13
Alignment explanation
Indices: 26721332--26721371 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
26721322 ACATTATTAA
* *
26721332 AAACATGACACAA
1 AAACATGAAACAT
26721345 AAACATGAAACAT
1 AAACATGAAACAT
26721358 AAACAT-AAACAT
1 AAACATGAAACAT
26721370 AA
1 AA
26721372 TCTAATTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 8 0.32
13 17 0.68
ACGTcount: A:0.65, C:0.17, G:0.05, T:0.12
Consensus pattern (13 bp):
AAACATGAAACAT
Found at i:26729290 original size:25 final size:24
Alignment explanation
Indices: 26729181--26729294 Score: 99
Period size: 25 Copynumber: 4.7 Consensus size: 24
26729171 CATCCCAACC
26729181 CACAGCTCATGTGAGCATTTACTGT
1 CACAGCTC-TGTGAGCATTTACTGT
*
26729206 CACAGCTCTGTGAGCACTT--T-T
1 CACAGCTCTGTGAGCATTTACTGT
** *
26729227 CTACATATCTAGTGAGCATTTACAGT
1 C-ACAGCTCT-GTGAGCATTTACTGT
* * *
26729253 TATAACTCATGTGAGCATTTACTGT
1 CACAGCTC-TGTGAGCATTTACTGT
26729278 CACAGCTCGTGTGAGCA
1 CACAGCTC-TGTGAGCA
26729295 CCTTCCTGCA
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
21 2 0.03
22 7 0.10
23 9 0.13
24 10 0.14
25 39 0.57
26 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (24 bp):
CACAGCTCTGTGAGCATTTACTGT
Found at i:26729684 original size:16 final size:18
Alignment explanation
Indices: 26729663--26729698 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
26729653 CATTCTTTGT
26729663 AGGTCA-TTGGAAG-TCA
1 AGGTCATTTGGAAGTTCA
26729679 AGGTCATTTGGAAGTTCA
1 AGGTCATTTGGAAGTTCA
26729697 AG
1 AG
26729699 TCAGAGTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 7 0.39
18 5 0.28
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.28
Consensus pattern (18 bp):
AGGTCATTTGGAAGTTCA
Found at i:26734935 original size:14 final size:14
Alignment explanation
Indices: 26734912--26734941 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26734902 CTTGTGAATT
*
26734912 ATGTGCTTATGTGA
1 ATGTGATTATGTGA
26734926 ATGTGATTATGTGA
1 ATGTGATTATGTGA
26734940 AT
1 AT
26734942 TGGGATGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (14 bp):
ATGTGATTATGTGA
Found at i:26737047 original size:38 final size:38
Alignment explanation
Indices: 26737005--26737149 Score: 155
Period size: 38 Copynumber: 3.8 Consensus size: 38
26736995 AGAAGCATAA
* *
26737005 TGTTATTCGGGCTCTATGCTTAGCAGGCTTTATACTGG
1 TGTTATTCGGGCTCTATGCCTAGCAGGCTTTATGCTGG
* * * * *
26737043 TGTTATTTGGGCTATATGCCTAGCAGGCTTTGTGCCGA
1 TGTTATTCGGGCTCTATGCCTAGCAGGCTTTATGCTGG
* * * * *
26737081 TGTTATTTGGGCACTGTGCCTAGTAGGCTTTCTGCTGG
1 TGTTATTCGGGCTCTATGCCTAGCAGGCTTTATGCTGG
** *
26737119 TGTTATTCGGGCTCTGCGACTAGCAGGCTTT
1 TGTTATTCGGGCTCTATGCCTAGCAGGCTTT
26737150 GTGCCAGTGA
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 88 1.00
ACGTcount: A:0.14, C:0.19, G:0.29, T:0.38
Consensus pattern (38 bp):
TGTTATTCGGGCTCTATGCCTAGCAGGCTTTATGCTGG
Found at i:26737131 original size:76 final size:76
Alignment explanation
Indices: 26737004--26737154 Score: 194
Period size: 76 Copynumber: 2.0 Consensus size: 76
26736994 TAGAAGCATA
* * * * *
26737004 ATGTTATTCGGGCTCTATGCTTAGCAGGCTTTATACTGGTGTTATTTGGGCTATATGCCTAGCAG
1 ATGTTATTCGGGCACTATGCCTAGCAGGCTTTATACTGGTGTTATTCGGGCTATACGACTAGCAG
26737069 GCTTTGTGCCG
66 GCTTTGTGCCG
* * * * * * *
26737080 ATGTTATTTGGGCACTGTGCCTAGTAGGCTTTCTGCTGGTGTTATTCGGGCTCTGCGACTAGCAG
1 ATGTTATTCGGGCACTATGCCTAGCAGGCTTTATACTGGTGTTATTCGGGCTATACGACTAGCAG
26737145 GCTTTGTGCC
66 GCTTTGTGCC
26737155 AGTGAATCAA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
76 63 1.00
ACGTcount: A:0.14, C:0.20, G:0.29, T:0.37
Consensus pattern (76 bp):
ATGTTATTCGGGCACTATGCCTAGCAGGCTTTATACTGGTGTTATTCGGGCTATACGACTAGCAG
GCTTTGTGCCG
Found at i:26744225 original size:38 final size:38
Alignment explanation
Indices: 26744156--26744234 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 38
26744146 AGAAGCATAA
* ** *
26744156 TGTTATTCGGGCTCTATGCCTAATAGGCTTTGTGTCGG
1 TGTTATTCGGGCTCTATGCCTAACAACCTTTGTGCCGG
* *
26744194 TGTTATTTGGGCTCTATGCCTAGCAACCTTTGTGCCGG
1 TGTTATTCGGGCTCTATGCCTAACAACCTTTGTGCCGG
26744232 TGT
1 TGT
26744235 ATCAAAAGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.13, C:0.20, G:0.28, T:0.39
Consensus pattern (38 bp):
TGTTATTCGGGCTCTATGCCTAACAACCTTTGTGCCGG
Found at i:26747067 original size:31 final size:31
Alignment explanation
Indices: 26747032--26747090 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
26747022 TTGATTTTTG
26747032 AACTACTCAAAAATTTTAATGTAAGTCAATT
1 AACTACTCAAAAATTTTAATGTAAGTCAATT
* * * *
26747063 AACTATTCAAAAGTTTTTATTTAAGTCA
1 AACTACTCAAAAATTTTAATGTAAGTCA
26747091 CTCAGCTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (31 bp):
AACTACTCAAAAATTTTAATGTAAGTCAATT
Found at i:26747655 original size:31 final size:31
Alignment explanation
Indices: 26747620--26747688 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
26747610 TTTAAAAATG
*
26747620 GTCACTAAACTATTCGAAAGTTTTCATTTAA
1 GTCACTAAACAATTCGAAAGTTTTCATTTAA
* * *
26747651 GTCACTCAACAATTTGAAAGTTTTTATTTAA
1 GTCACTAAACAATTCGAAAGTTTTCATTTAA
26747682 GTCACTA
1 GTCACTA
26747689 GGTCTTTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (31 bp):
GTCACTAAACAATTCGAAAGTTTTCATTTAA
Found at i:26753621 original size:7 final size:7
Alignment explanation
Indices: 26753609--26753634 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26753599 AGCAAAAAAA
26753609 TTCATAT
1 TTCATAT
26753616 TTCATAT
1 TTCATAT
26753623 TTCATAT
1 TTCATAT
26753630 TTCAT
1 TTCAT
26753635 TTTTGCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.15, G:0.00, T:0.58
Consensus pattern (7 bp):
TTCATAT
Found at i:26756353 original size:63 final size:63
Alignment explanation
Indices: 26756276--26756396 Score: 197
Period size: 63 Copynumber: 1.9 Consensus size: 63
26756266 CTGCAATAGT
* *
26756276 ACATTTGAAACATGAAAAGTTAGAACAAATTCTCTAACAAGTTCTCATCAGTAATATTAGAGC
1 ACATTTGAAACATGAAAAGTTAAAAAAAATTCTCTAACAAGTTCTCATCAGTAATATTAGAGC
* * *
26756339 ACATTTGAAGCATGAAAAGTTAAAAAAAATTCTCTAACAAGTTCTCATTAGTAGTATT
1 ACATTTGAAACATGAAAAGTTAAAAAAAATTCTCTAACAAGTTCTCATCAGTAATATT
26756397 CTCACATAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (63 bp):
ACATTTGAAACATGAAAAGTTAAAAAAAATTCTCTAACAAGTTCTCATCAGTAATATTAGAGC
Found at i:26757610 original size:9 final size:9
Alignment explanation
Indices: 26757569--26757610 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
26757559 AATAAATAAT
26757569 AAAGAGAACA
1 AAAGA-AACA
26757579 AAA-AAACA
1 AAAGAAACA
*
26757587 AAAGAAATA
1 AAAGAAACA
26757596 AAAGAAACA
1 AAAGAAACA
*
26757605 AGAGAA
1 AAAGAA
26757611 CTCTGAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
8 7 0.25
9 18 0.64
10 3 0.11
ACGTcount: A:0.76, C:0.07, G:0.14, T:0.02
Consensus pattern (9 bp):
AAAGAAACA
Found at i:26765958 original size:5 final size:5
Alignment explanation
Indices: 26765948--26765987 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
26765938 AATTATTTAT
26765948 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
26765988 TAATTTGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:26770899 original size:19 final size:19
Alignment explanation
Indices: 26770875--26770911 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
26770865 TGAAATGCAT
26770875 GTATTGATGGGTGTAAAAG
1 GTATTGATGGGTGTAAAAG
26770894 GTATTGATGGGTGTAAAA
1 GTATTGATGGGTGTAAAA
26770912 CGTGATGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (19 bp):
GTATTGATGGGTGTAAAAG
Found at i:26774115 original size:38 final size:37
Alignment explanation
Indices: 26774067--26774149 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
26774057 TTTCAGTACG
* *
26774067 GTGGCATGCTTAAACGTACATTTAGTATAACAGTATCA
1 GTGGCATGCTT-AACATACATTCAGTATAACAGTATCA
* ** *
26774105 GTGGTATGCTTTGCATACATTCAGTATAACAGTATCG
1 GTGGCATGCTTAACATACATTCAGTATAACAGTATCA
26774142 GTGGCATG
1 GTGGCATG
26774150 TTTTTCATAC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 28 0.74
38 10 0.26
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (37 bp):
GTGGCATGCTTAACATACATTCAGTATAACAGTATCA
Found at i:26774124 original size:37 final size:37
Alignment explanation
Indices: 26774083--26774164 Score: 119
Period size: 37 Copynumber: 2.2 Consensus size: 37
26774073 TGCTTAAACG
*
26774083 TACATTTAGTATAACAGTATCAGTGGTATGCTTTGCA
1 TACATTTAGTATAACAGTATCAGTGGCATGCTTTGCA
* * * *
26774120 TACATTCAGTATAACAGTATCGGTGGCATGTTTTTCA
1 TACATTTAGTATAACAGTATCAGTGGCATGCTTTGCA
26774157 TACATTTA
1 TACATTTA
26774165 ATGAAAATAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (37 bp):
TACATTTAGTATAACAGTATCAGTGGCATGCTTTGCA
Found at i:26784888 original size:29 final size:26
Alignment explanation
Indices: 26784831--26784895 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
26784821 CTCAATACCA
* * *
26784831 ACCCAACACCTAAATAAAAACCAATT
1 ACCCAAAACCTAAAAAAAAACCAAAT
26784857 ACCCAAAACCTAAAAAAATAGACCCAAAT
1 ACCCAAAACCTAAAAAAA-A-A-CCAAAT
26784886 ACCCAAAACC
1 ACCCAAAACC
26784896 CCAACAAGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 16 0.48
27 1 0.03
28 1 0.03
29 15 0.45
ACGTcount: A:0.55, C:0.32, G:0.02, T:0.11
Consensus pattern (26 bp):
ACCCAAAACCTAAAAAAAAACCAAAT
Found at i:26796309 original size:61 final size:61
Alignment explanation
Indices: 26796214--26796335 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
26796204 CACCCTTGTA
26796214 CATACTACTTATAATTTTATTGAAATTTCAGATTTGTTAAGTGCAGAATTTTCTTTGAGGT
1 CATACTACTTATAATTTTATTGAAATTTCAGATTTGTTAAGTGCAGAATTTTCTTTGAGGT
*
26796275 CATACTACTTATAATTTTATTGAAATTTCAGATTTGTTCAGTGCAGAATTTTCTTTGAGGT
1 CATACTACTTATAATTTTATTGAAATTTCAGATTTGTTAAGTGCAGAATTTTCTTTGAGGT
26796336 TTTCTGCAAG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.46
Consensus pattern (61 bp):
CATACTACTTATAATTTTATTGAAATTTCAGATTTGTTAAGTGCAGAATTTTCTTTGAGGT
Found at i:26806182 original size:56 final size:53
Alignment explanation
Indices: 26806111--26806248 Score: 156
Period size: 50 Copynumber: 2.6 Consensus size: 53
26806101 AGATCCCATG
* ** *
26806111 TAAGACCATGTCTGGGATATGGCATTGGCATTATTGAGGTTATGAGAGGTCCCACT
1 TAAGACCATGTCTGGGACATGGCATTGGCATTACCGA-G--ATGAGAGGTCCCACA
* *
26806167 TAAGACCATGTCTGGGACATAGCATT-GC--TACCGAGATGAGAGGTCCCCCA
1 TAAGACCATGTCTGGGACATGGCATTGGCATTACCGAGATGAGAGGTCCCACA
* *
26806217 TAAGACCATGCCTGGGACATGGCATGGGCATT
1 TAAGACCATGTCTGGGACATGGCATTGGCATT
26806249 GATATGAGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
50 36 0.51
51 2 0.03
52 1 0.01
53 5 0.07
55 2 0.03
56 24 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (53 bp):
TAAGACCATGTCTGGGACATGGCATTGGCATTACCGAGATGAGAGGTCCCACA
Found at i:26806566 original size:20 final size:20
Alignment explanation
Indices: 26806541--26806579 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26806531 TGAGTTATTT
26806541 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
26806561 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
26806580 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:26808615 original size:20 final size:20
Alignment explanation
Indices: 26808590--26808635 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
26808580 TGAGTTATTT
*
26808590 AAGTAAGCAAGTAAGTAAAA
1 AAGTAAGAAAGTAAGTAAAA
*
26808610 AAGTAAGAAAGTAAGTAAAG
1 AAGTAAGAAAGTAAGTAAAA
26808630 AAGTAA
1 AAGTAA
26808636 AGATCATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.22, T:0.15
Consensus pattern (20 bp):
AAGTAAGAAAGTAAGTAAAA
Found at i:26809842 original size:71 final size:71
Alignment explanation
Indices: 26809726--26809862 Score: 213
Period size: 71 Copynumber: 1.9 Consensus size: 71
26809716 GAATTTGATG
* * * *
26809726 TTGCCATAGAAGGGAAAGATGTTCATCATATTATAAATCATAAGAATAAGGGATGAAGTTTAATT
1 TTGCCATAGAAGGGAAAAATATTCATCATATTATAAAACATAAGAACAAGGGATGAAGTTTAATT
26809791 TCCATA
66 TCCATA
*
26809797 TTGCCATAGAAGGGAAAAATATTCAGT-ATATTATAAAACATAAGAACAATGGATGAAGTTTAAT
1 TTGCCATAGAAGGGAAAAATATTCA-TCATATTATAAAACATAAGAACAAGGGATGAAGTTTAAT
26809861 TT
65 TT
26809863 TCAAGCTTTG
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
71 59 0.98
72 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.18, T:0.31
Consensus pattern (71 bp):
TTGCCATAGAAGGGAAAAATATTCATCATATTATAAAACATAAGAACAAGGGATGAAGTTTAATT
TCCATA
Found at i:26810418 original size:50 final size:50
Alignment explanation
Indices: 26810323--26810440 Score: 137
Period size: 50 Copynumber: 2.4 Consensus size: 50
26810313 TGAGGTTATG
* * * *
26810323 AGAGGTCCCACTTAAGACCATGTCTAGGACATAGCGTTGGTACCGAGATA
1 AGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGAGATA
* * * *
26810373 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATA
1 AGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGAGATA
** *
26810423 AGAACTCCCATGTAAGAC
1 AGAGGTCCCACGTAAGAC
26810441 TATATGTGGG
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.30, C:0.25, G:0.26, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGAGATA
Found at i:26810735 original size:20 final size:20
Alignment explanation
Indices: 26810710--26810748 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26810700 TGAGTTATTT
26810710 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
26810730 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
26810749 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:26817658 original size:49 final size:49
Alignment explanation
Indices: 26817597--26817762 Score: 208
Period size: 49 Copynumber: 3.4 Consensus size: 49
26817587 TGAGAACTCT
26817597 CATGTAAGACCATATCTGAGATATGACATTTGCAGTACAGGAAACATCC
1 CATGTAAGACCATATCTGAGATATGACATTTGCAGTACAGGAAACATCC
* * * * ** * * * *
26817646 CATGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAAC-TCT
1 CATGTAAGACCATATCTGAGATATGACATTTGCAGT-ACAGGA-AACATCC
26817696 CATGTAAGACCATATCTGAGATATGACATTTGCAGTACAGGAAACATCC
1 CATGTAAGACCATATCTGAGATATGACATTTGCAGTACAGGAAACATCC
*
26817745 CATGTAAGACCATGTCTG
1 CATGTAAGACCATATCTG
26817763 GGACATGGCA
Statistics
Matches: 93, Mismatches: 21, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
48 3 0.03
49 52 0.56
50 35 0.38
51 3 0.03
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (49 bp):
CATGTAAGACCATATCTGAGATATGACATTTGCAGTACAGGAAACATCC
Found at i:26817691 original size:99 final size:99
Alignment explanation
Indices: 26817543--26817774 Score: 464
Period size: 99 Copynumber: 2.3 Consensus size: 99
26817533 AGGGGATGAG
26817543 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACTCTCATGTAAGACC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACTCTCATGTAAGACC
26817608 ATATCTGAGATATGACATTTGCAGTACAGGAAAC
66 ATATCTGAGATATGACATTTGCAGTACAGGAAAC
26817642 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACTCTCATGTAAGACC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACTCTCATGTAAGACC
26817707 ATATCTGAGATATGACATTTGCAGTACAGGAAAC
66 ATATCTGAGATATGACATTTGCAGTACAGGAAAC
26817741 ATCCCATGTAAGACCATGTCTGGGACATGGCATG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATG
26817775 TTATTATCAG
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 133 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (99 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACTCTCATGTAAGACC
ATATCTGAGATATGACATTTGCAGTACAGGAAAC
Found at i:26818000 original size:20 final size:20
Alignment explanation
Indices: 26817975--26818020 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
26817965 TGAGTTATTT
*
26817975 AAGTAAGCAAGTAAGTAAAA
1 AAGTAAGAAAGTAAGTAAAA
*
26817995 AAGTAAGAAAGTAAGTAAAG
1 AAGTAAGAAAGTAAGTAAAA
26818015 AAGTAA
1 AAGTAA
26818021 AGATCATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.22, T:0.15
Consensus pattern (20 bp):
AAGTAAGAAAGTAAGTAAAA
Found at i:26819419 original size:20 final size:19
Alignment explanation
Indices: 26819396--26819442 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
26819386 ATTTAGCCAC
*
26819396 TTTTATTTTTATTTTAATAT
1 TTTTATTTTTAATTTAAT-T
*
26819416 TTTTGTTTTTAATTTAATT
1 TTTTATTTTTAATTTAATT
26819435 TTTATATT
1 TTT-TATT
26819443 CTAATCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (19 bp):
TTTTATTTTTAATTTAATT
Found at i:26819468 original size:32 final size:32
Alignment explanation
Indices: 26819400--26819468 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
26819390 AGCCACTTTT
*
26819400 ATTTTTATTTTAATATTTTTGTTTTTAATTTA
1 ATTTTTATTTTAATATTTTTGTGTTTAATTTA
* *
26819432 ATTTTTATATTCTAATCTTTTT-TGTTT-ATTTG
1 ATTTTTAT-TT-TAATATTTTTGTGTTTAATTTA
26819464 ATTTT
1 ATTTT
26819469 GACAGGTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 17 0.53
33 6 0.19
34 9 0.28
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.71
Consensus pattern (32 bp):
ATTTTTATTTTAATATTTTTGTGTTTAATTTA
Found at i:26838858 original size:15 final size:16
Alignment explanation
Indices: 26838829--26838858 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26838819 TTGGTTAGTA
26838829 GACTGGAATCAGAGAG
1 GACTGGAATCAGAGAG
26838845 GACTGGAA-CAGAGA
1 GACTGGAATCAGAGA
26838859 TGTTTGATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.13, G:0.37, T:0.10
Consensus pattern (16 bp):
GACTGGAATCAGAGAG
Found at i:26842751 original size:15 final size:16
Alignment explanation
Indices: 26842722--26842757 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
26842712 AGCATAATAT
*
26842722 ATTATTAATTAATAAA
1 ATTATAAATTAATAAA
26842738 ATTATAAATT-ATAAA
1 ATTATAAATTAATAAA
26842753 ATTAT
1 ATTAT
26842758 TGTACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTATAAATTAATAAA
Found at i:26843321 original size:23 final size:22
Alignment explanation
Indices: 26843278--26843330 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
26843268 ATCCATAATA
26843278 AATTATATTTATTATTATAAATT
1 AATTATATTTA-TATTATAAATT
26843301 AATTATCATTTA-ATTAGTAAA-T
1 AATTAT-ATTTATATTA-TAAATT
*
26843323 AGTTATAT
1 AATTATAT
26843331 AGCAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 10 0.37
23 10 0.37
24 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (22 bp):
AATTATATTTATATTATAAATT
Found at i:26844030 original size:16 final size:18
Alignment explanation
Indices: 26844009--26844041 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26843999 TAAACCCACG
26844009 AAAAAA-AT-TATTTTTT
1 AAAAAATATATATTTTTT
26844025 AAAAAATATATATTTTT
1 AAAAAATATATATTTTT
26844042 ATTATCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAAAAATATATATTTTTT
Found at i:26856516 original size:32 final size:33
Alignment explanation
Indices: 26856450--26856517 Score: 102
Period size: 32 Copynumber: 2.1 Consensus size: 33
26856440 CAGTGGACTT
* *
26856450 TATCTCTGTTCTATGTTTACTGTCCTAATAGAC
1 TATCTCTGTTCTATGTTTACTGTCCCAACAGAC
*
26856483 TATCTCTGTTCTATG-TTACTGTCCCAACGGAC
1 TATCTCTGTTCTATGTTTACTGTCCCAACAGAC
26856515 TAT
1 TAT
26856518 TTCTATGGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.43
Consensus pattern (33 bp):
TATCTCTGTTCTATGTTTACTGTCCCAACAGAC
Found at i:26858576 original size:16 final size:16
Alignment explanation
Indices: 26858529--26858582 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
26858519 ATTTGGTTCG
*
26858529 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAA
*
26858545 CTGTAATTGAATAGAA
1 CTGTAATGGAATAGAA
26858561 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAA
26858577 CT-TAAT
1 CTGTAAT
26858583 AATAATTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
15 4 0.11
16 31 0.89
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAA
Found at i:26858615 original size:44 final size:44
Alignment explanation
Indices: 26858565--26858656 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
26858555 ATAGAACTGT
26858565 AATGGAATAGAACT-TAATAATAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAT-ATTC-ATGTGTTTGGTTGAATGG
* *
26858609 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAATATTCATGTGTTTGGTTGAATGG
26858653 AATG
1 AATG
26858657 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 1 0.02
44 37 0.84
45 6 0.14
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAATATTCATGTGTTTGGTTGAATGG
Found at i:26858847 original size:17 final size:18
Alignment explanation
Indices: 26858812--26858847 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26858802 AATTATTATT
26858812 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
*
26858830 AAATATATTTTAATAAAA
1 AAATATAATTTAATAAAA
26858848 TTCTTAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATATAATTTAATAAAA
Found at i:26860303 original size:38 final size:39
Alignment explanation
Indices: 26860249--26860326 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
26860239 AGTTGAGGAA
*
26860249 AGGGAAAAAAAAAGCAATTACTTTACCAAAATGGATCCC
1 AGGGAAAAAAAAAGCAACTACTTTACCAAAATGGATCCC
*
26860288 AGGG-AAAAAAGAGCAACTACTTTACCAAAATGGATCCC
1 AGGGAAAAAAAAAGCAACTACTTTACCAAAATGGATCCC
26860326 A
1 A
26860327 ATACAAGAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 33 0.89
39 4 0.11
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17
Consensus pattern (39 bp):
AGGGAAAAAAAAAGCAACTACTTTACCAAAATGGATCCC
Found at i:26863714 original size:9 final size:9
Alignment explanation
Indices: 26863679--26863725 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
26863669 AAAATTTAAA
26863679 AATA-TTTT
1 AATACTTTT
* *
26863687 TATATTTTT
1 AATACTTTT
*
26863696 TATACTTTT
1 AATACTTTT
26863705 AATACTTTT
1 AATACTTTT
*
26863714 AATAATTTT
1 AATACTTTT
26863723 AAT
1 AAT
26863726 TTTTAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
8 3 0.09
9 31 0.91
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (9 bp):
AATACTTTT
Found at i:26864589 original size:17 final size:17
Alignment explanation
Indices: 26864550--26864588 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
26864540 TTTTTTATAA
26864550 AATTTTATATCTTTTAC
1 AATTTTATATCTTTTAC
26864567 AATTTTATAT-TTTTAC
1 AATTTTATATCTTTTAC
*
26864583 GATTTT
1 AATTTT
26864589 TTATAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (17 bp):
AATTTTATATCTTTTAC
Found at i:26864643 original size:24 final size:24
Alignment explanation
Indices: 26864610--26864662 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
26864600 TTACAACTGT
* *
26864610 TATAATTTTTTATGATTTTTATTTC
1 TATAGTTTTCTAT-ATTTTTATTTC
*
26864635 TATAGTTTTCTATATTTTTATTTT
1 TATAGTTTTCTATATTTTTATTTC
26864659 TATA
1 TATA
26864663 ATATTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (24 bp):
TATAGTTTTCTATATTTTTATTTC
Found at i:26864668 original size:17 final size:16
Alignment explanation
Indices: 26864646--26864743 Score: 54
Period size: 17 Copynumber: 5.7 Consensus size: 16
26864636 ATAGTTTTCT
26864646 ATATTTTTATTTTTATA
1 ATATTTTTATTTTT-TA
* ***
26864663 ATATTTATAAATTTAAAA
1 ATATTT-T-TATTTTTTA
*
26864681 AATATTTTTATTTTCT-
1 A-TATTTTTATTTTTTA
* *
26864697 GTATTTTTATATTCTTA
1 ATATTTTTAT-TTTTTA
26864714 ATATTTTGTAATTTTTTA
1 ATATTTT-T-ATTTTTTA
26864732 ATAATTTTTATT
1 AT-ATTTTTATT
26864744 GATTTTTATT
Statistics
Matches: 60, Mismatches: 13, Indels: 16
0.67 0.15 0.18
Matches are distributed among these distances:
15 9 0.15
16 3 0.05
17 19 0.32
18 13 0.22
19 16 0.27
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (16 bp):
ATATTTTTATTTTTTA
Found at i:26864676 original size:25 final size:24
Alignment explanation
Indices: 26864610--26864676 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 24
26864600 TTACAACTGT
* *
26864610 TATAATTTTTTATGATTTTTATTTC
1 TATAATTTTATA-AATTTTTATTTC
* * * *
26864635 TATAGTTTTCTATATTTTTATTTT
1 TATAATTTTATAAATTTTTATTTC
26864659 TATAATATTTATAAATTT
1 TATAAT-TTTATAAATTT
26864677 AAAAAATATT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
24 15 0.44
25 19 0.56
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (24 bp):
TATAATTTTATAAATTTTTATTTC
Found at i:26867378 original size:3 final size:3
Alignment explanation
Indices: 26867370--26867418 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
26867360 CTAAACAATG
* *
26867370 TAA TAA TAA TGA T-A TAA TGA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
26867415 TAA T
1 TAA T
26867419 GGACTAAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:26867475 original size:30 final size:29
Alignment explanation
Indices: 26867427--26867497 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 29
26867417 ATGGACTAAA
*
26867427 TTGAAATAAAATGAAAAAGT-AGGGCGGAT
1 TTGAAATAAATTGAAAAAGTGA-GGCGGAT
26867456 TTGAAATAAATTAGAAAAAGTGAGGCGGAT
1 TTGAAATAAATT-GAAAAAGTGAGGCGGAT
26867486 TTGAAATAAATT
1 TTGAAATAAATT
26867498 TGAAGATAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
29 11 0.28
30 27 0.69
31 1 0.03
ACGTcount: A:0.48, C:0.03, G:0.24, T:0.25
Consensus pattern (29 bp):
TTGAAATAAATTGAAAAAGTGAGGCGGAT
Found at i:26868419 original size:17 final size:17
Alignment explanation
Indices: 26868397--26868431 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26868387 CTAGGGAGGC
26868397 TCTTAGGGTTTCTGTTT
1 TCTTAGGGTTTCTGTTT
26868414 TCTTAGGGTTTCTGTTT
1 TCTTAGGGTTTCTGTTT
26868431 T
1 T
26868432 TTTATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.11, G:0.23, T:0.60
Consensus pattern (17 bp):
TCTTAGGGTTTCTGTTT
Found at i:26880847 original size:44 final size:44
Alignment explanation
Indices: 26880796--26880892 Score: 185
Period size: 44 Copynumber: 2.2 Consensus size: 44
26880786 AAATCTCCCA
26880796 TCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCTT
*
26880840 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCTT
26880884 TCTTCGATC
1 TCTTCGATC
26880893 GATTCCACTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.30
Consensus pattern (44 bp):
TCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCTT
Found at i:26880849 original size:175 final size:175
Alignment explanation
Indices: 26880648--26880987 Score: 644
Period size: 175 Copynumber: 1.9 Consensus size: 175
26880638 ACCAGTATGG
26880648 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCTTTCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCTTTCTT
26880713 CGAGCGATTCCACTGTAGACAGGGAGTTAGAATTACTGGCTTCAACATACTCCACTATAACCTCA
66 CGAGCGATTCCACTGTAGACAGGGAGTTAGAATTACTGGCTTCAACATACTCCACTATAACCTCA
*
26880778 GAGAGGTAAAATCTCCCATCTTCGATCTACTCCACGCCAATACAT
131 GAGAGGTAAAATCTACCATCTTCGATCTACTCCACGCCAATACAT
*
26880823 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCTTTCTT
* *
26880888 CGATCGATTCCACTGTAGACAGGGAGTTAGAATTACTGGCTTCAATATACTCCACTATAACCTCA
66 CGAGCGATTCCACTGTAGACAGGGAGTTAGAATTACTGGCTTCAACATACTCCACTATAACCTCA
26880953 GAGAGGTAAAATCTACCATCTTCGATCTACTCCAC
131 GAGAGGTAAAATCTACCATCTTCGATCTACTCCAC
26880988 TACTGTCTAG
Statistics
Matches: 161, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
175 161 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (175 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCTTTCTT
CGAGCGATTCCACTGTAGACAGGGAGTTAGAATTACTGGCTTCAACATACTCCACTATAACCTCA
GAGAGGTAAAATCTACCATCTTCGATCTACTCCACGCCAATACAT
Found at i:26881031 original size:44 final size:44
Alignment explanation
Indices: 26880970--26881312 Score: 225
Period size: 44 Copynumber: 7.8 Consensus size: 44
26880960 AAAATCTACC
* *
26880970 ATCTTCGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * * *
26881014 ATATTCAATCTATTCCACTGCTGCCCAGTGAGAT-AGA-AT-TA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * * * **
26881055 CTGGCTTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCC
1 AT--CTTCAATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTA
*
26881102 ATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * * *
26881146 ATTTTCAATCTATTCCACTGCTGCCCAGTGAGAT-AGA-AT-TA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * * * **
26881187 CTGGCTTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCC
1 AT--CTTCAATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTA
*
26881234 ATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * ** *
26881278 ATTTTCAATCTATTCCACTGTTGCCCAGGGAGATA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATA
26881313 GAATTATTGG
Statistics
Matches: 218, Mismatches: 65, Indels: 32
0.69 0.21 0.10
Matches are distributed among these distances:
41 6 0.03
42 4 0.02
43 38 0.17
44 124 0.57
45 40 0.18
46 4 0.02
47 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
Found at i:26881081 original size:132 final size:132
Alignment explanation
Indices: 26880915--26881368 Score: 827
Period size: 132 Copynumber: 3.4 Consensus size: 132
26880905 GACAGGGAGT
* * * *
26880915 TAGAATTACTGGCTTCAATATACTCCACTATAACCTCAGAGAGGTAAAATCTACCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* *
26880980 TACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAGTGA
66 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGCCCAGTGA
26881045 GA
131 GA
26881047 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
26881112 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGCCCAGTGA
66 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGCCCAGTGA
26881177 GA
131 GA
26881179 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* *
26881244 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGTTGCCCAGGGA
66 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGCCCAGTGA
26881309 GA
131 GA
*
26881311 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATC
26881369 AACCTGCTCC
Statistics
Matches: 313, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 313 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGCCCAGTGA
GA
Found at i:26881351 original size:44 final size:45
Alignment explanation
Indices: 26880907--26881362 Score: 152
Period size: 44 Copynumber: 10.4 Consensus size: 45
26880897 CCACTGTAGA
* * *
26880907 CAGGGAGTTAGAAT-TACTGGCTTCAATATACTCCACTATAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
* * * *** * *
26880951 CAGAGAGGTAAAATCTACCATCTTCGATCTACTCCAC--T-ACTGT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAAC-CT
* * * *
26880994 CTAGGGAGATA-AGATCTGTAAT--ATTCAATCTATTCCACTGCT-GCC-
1 C-AGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACTG-TAACCT
* *
26881039 CAGTGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
* * * *** * * *
26881083 CAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTACT-GCCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACT-GTAACCT
* * * *
26881128 -AGGGAGATA-AGATCTGTAAT--TTTCAATCTATTCCACTGCT-GCC-
1 CAGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACTG-TAACCT
* *
26881171 CAGTGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
* * * *** * * *
26881215 CAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTACT-GCCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACT-GTAACCT
* * * **
26881260 -AGGGAGATA-AGATCTGTAAT--TTTCAATCTATTCCACTGTTGCC-
1 CAGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACTGTAACCT
* *
26881303 CAGGGAGATAGAAT-TATTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
* *
26881347 CAGGGAGGTAAAATCT
1 CAGGGAGATAGAATCT
26881363 GCCATCAACC
Statistics
Matches: 298, Mismatches: 76, Indels: 75
0.66 0.17 0.17
Matches are distributed among these distances:
41 9 0.03
42 4 0.01
43 59 0.20
44 156 0.52
45 62 0.21
46 6 0.02
47 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (45 bp):
CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
Found at i:26882606 original size:8 final size:7
Alignment explanation
Indices: 26882565--26882603 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
26882555 AGCCTCGCCA
*
26882565 TTTTAAT
1 TTTTCAT
26882572 TTTTCAT
1 TTTTCAT
26882579 TTTTCA-
1 TTTTCAT
26882585 TTTTCAT
1 TTTTCAT
26882592 CTTTTCAT
1 -TTTTCAT
26882600 TTTT
1 TTTT
26882604 TCACATCGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTTCAT
Found at i:26885369 original size:48 final size:48
Alignment explanation
Indices: 26885308--26885399 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
26885298 TTGCATCTCC
* *
26885308 TTCTGGTACTGTTCAAGCTTTTCCAATCTCTGATCCATGTCTTTAACA
1 TTCTGATACTGTTCAAGCTTTTCCAATCTCTGATCCATATCTTTAACA
* * *
26885356 TTCTGATATTGTTCGAGCTTTTCCAATCTCTGATCTATATCTTT
1 TTCTGATACTGTTCAAGCTTTTCCAATCTCTGATCCATATCTTT
26885400 TGTCTTTGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.46
Consensus pattern (48 bp):
TTCTGATACTGTTCAAGCTTTTCCAATCTCTGATCCATATCTTTAACA
Found at i:26885522 original size:19 final size:19
Alignment explanation
Indices: 26885498--26885543 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
26885488 AAAGATGTCT
* *
26885498 AATGCATATG-ATGTAATG
1 AATGCAAATGCATGGAATG
26885516 AAATGCAAATGCATGGAATG
1 -AATGCAAATGCATGGAATG
26885536 AATGCAAA
1 AATGCAAA
26885544 AAAGAGACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.24
Consensus pattern (19 bp):
AATGCAAATGCATGGAATG
Found at i:26885988 original size:17 final size:17
Alignment explanation
Indices: 26885966--26886001 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26885956 TTCTATGATG
* *
26885966 AAATGTCGTGCAGTCAA
1 AAATGTCATGCAGCCAA
26885983 AAATGTCATGCAGCCAA
1 AAATGTCATGCAGCCAA
26886000 AA
1 AA
26886002 CAAAACACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (17 bp):
AAATGTCATGCAGCCAA
Found at i:26887379 original size:7 final size:7
Alignment explanation
Indices: 26887360--26887391 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
26887350 ATAAAACATA
26887360 TATAAATG
1 TATAAA-G
26887368 TATAAAG
1 TATAAAG
26887375 TATAAAG
1 TATAAAG
26887382 TATAAAG
1 TATAAAG
26887389 TAT
1 TAT
26887392 GAAAAAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.34
Consensus pattern (7 bp):
TATAAAG
Found at i:26887562 original size:3 final size:3
Alignment explanation
Indices: 26887554--26887602 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
26887544 CTAAACAATG
* *
26887554 TAA TAA TAA TGA T-A TAA TGA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
26887599 TAA T
1 TAA T
26887603 GGACTAAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:26888058 original size:62 final size:63
Alignment explanation
Indices: 26887944--26888070 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 63
26887934 TTTAAAGCAG
*
26887944 TTTTTTTCTAAAAATCTATTTACCGCAGAATAAAAGAAAAAAAAATAAAAACACCCAAATACTC
1 TTTTTTTCTAAAAATCTATTTACAGCAGAATAAAAG-AAAAAAAATAAAAACACCCAAATACTC
26888008 TTTTTTTCTAAAAATCTATTTACAGCAGAATAAAAG-AAAAAAATAAAAACACCCAAATACTC
1 TTTTTTTCTAAAAATCTATTTACAGCAGAATAAAAGAAAAAAAATAAAAACACCCAAATACTC
26888070 T
1 T
26888071 CTGCTAGGGT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
62 27 0.44
64 35 0.56
ACGTcount: A:0.51, C:0.17, G:0.05, T:0.28
Consensus pattern (63 bp):
TTTTTTTCTAAAAATCTATTTACAGCAGAATAAAAGAAAAAAAATAAAAACACCCAAATACTC
Found at i:26890227 original size:13 final size:13
Alignment explanation
Indices: 26890209--26890233 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26890199 GTTTATGAAC
26890209 TATTTTTGGATGT
1 TATTTTTGGATGT
26890222 TATTTTTGGATG
1 TATTTTTGGATG
26890234 ATCTTTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (13 bp):
TATTTTTGGATGT
Found at i:26899486 original size:17 final size:18
Alignment explanation
Indices: 26899451--26899486 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26899441 AATTATTATT
26899451 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
*
26899469 AAATATATTTTAATAAAA
1 AAATATAATTTAATAAAA
26899487 TTCTTAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATATAATTTAATAAAA
Found at i:26902177 original size:15 final size:15
Alignment explanation
Indices: 26902159--26902196 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
26902149 ATCCTTGTCA
26902159 TCGTCATCATCGTCG
1 TCGTCATCATCGTCG
* *
26902174 TCGTCATCGTTGTCG
1 TCGTCATCATCGTCG
26902189 TCGTCATC
1 TCGTCATC
26902197 TTCAACTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.32, G:0.21, T:0.37
Consensus pattern (15 bp):
TCGTCATCATCGTCG
Found at i:26905019 original size:13 final size:13
Alignment explanation
Indices: 26905001--26905029 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26904991 CCTTAGTCGT
26905001 CTCCCTACACTCA
1 CTCCCTACACTCA
26905014 CTCCCTACACTCA
1 CTCCCTACACTCA
26905027 CTC
1 CTC
26905030 AAATAACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.55, G:0.00, T:0.24
Consensus pattern (13 bp):
CTCCCTACACTCA
Found at i:26909416 original size:26 final size:26
Alignment explanation
Indices: 26909387--26909440 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
26909377 ACCTTTTCAA
26909387 TCCATAACATTTTCAATATTTAACCT
1 TCCATAACATTTTCAATATTTAACCT
26909413 TCCATAACATTTTCAATATTTAACCT
1 TCCATAACATTTTCAATATTTAACCT
26909439 TC
1 TC
26909441 TTATTGATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.43
Consensus pattern (26 bp):
TCCATAACATTTTCAATATTTAACCT
Found at i:26909485 original size:15 final size:15
Alignment explanation
Indices: 26909452--26909520 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
26909442 TATTGATATA
* * *
26909452 CTTTTCAACGAAAAA
1 CTTTTCATCGATAAC
*
26909467 CTTTTCATCGATAGC
1 CTTTTCATCGATAAC
*
26909482 CTTTTCATTGATAAC
1 CTTTTCATCGATAAC
* *
26909497 CATTTCATAGATAAC
1 CTTTTCATCGATAAC
26909512 CTTTTCATC
1 CTTTTCATC
26909521 AATTCGGGAA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (15 bp):
CTTTTCATCGATAAC
Found at i:26915641 original size:71 final size:71
Alignment explanation
Indices: 26915525--26915882 Score: 364
Period size: 71 Copynumber: 5.0 Consensus size: 71
26915515 TCAATAATGA
* * * * * * * *
26915525 GTGTGCCTAGCACTGGTTGGTATAACCAACAATAAATGTGCCCTGCTCTAGTCGGTAGGACCGAA
1 GTGTGCCCAGCACTGGTCGATATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTA-AACCGAA
26915590 -AAATAT
65 CAAATAT
* * * * * *** *
26915596 GTGTGCCCAGCACTAGTCGGTATAACCAAAAATAAATGCGCCCTGCGCTGGTTGGTAAAATAAAT
1 GTGTGCCCAGCACTGGTCGATATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAAACCGAAC
26915661 AAATAT
66 AAATAT
* ** *
26915667 GTATGCCCAGCACTGGTCGATATAATTGACAATAAATGTGCCCTGCGCTGGTCGGTTAAACCGAA
1 GTGTGCCCAGCACTGGTCGATATAACCGACAATAAATGCGCCCTGCGCTGGTCGG-TAAACCGAA
26915732 -AAATAT
65 CAAATAT
* * * * **
26915738 GTGTGCCCAGCACTGGTCGATATAACCGAAAATAAGTGCGCCCTACGCTGATTAGTAAAACC-AA
1 GTGTGCCCAGCACTGGTCGATATAACCGACAATAAATGCGCCCTGCGCTGGTCGGT-AAACCGAA
26915802 CAAATAT
65 CAAATAT
* * * *
26915809 GTGTGCCCAGCACTGGTTGATCTAACCGACAATAAATGCGCCCTGCGTTGGTCTGTACAACCGAA
1 GTGTGCCCAGCACTGGTCGATATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTA-AACCGAA
*
26915874 -AAGTAT
65 CAAATAT
26915880 GTG
1 GTG
26915883 CGAAATCATT
Statistics
Matches: 237, Mismatches: 44, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
70 7 0.03
71 222 0.94
72 8 0.03
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (71 bp):
GTGTGCCCAGCACTGGTCGATATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAAACCGAAC
AAATAT
Found at i:26915754 original size:36 final size:36
Alignment explanation
Indices: 26915525--26915825 Score: 177
Period size: 36 Copynumber: 8.5 Consensus size: 36
26915515 TCAATAATGA
* * * *
26915525 GTGTGCCTAGCACTGGTTGGTATAACC-AACAATAA
1 GTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAT
* * * * **
26915560 ATGTGCCCTGCTCTAGTCGGTAGGACCGAAAAATAT
1 GTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAT
* *
26915596 GTGTGCCCAGCACTAGTCGGTATAACC-AAAAATAA
1 GTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAT
* * * * * ***
26915631 ATGCGCCCTGCGCTGGTTGGTA-AAATAAATAAATAT
1 GTGTGCCCAGCACTGGTCGGTATAACCGAA-AAATAT
* * ** * *
26915667 GTATGCCCAGCACTGGTCGATATAATTG-ACAATAA
1 GTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAT
* * *
26915702 ATGTGCCCTGCGCTGGTCGGT-TAAACCGAAAAATAT
1 GTGTGCCCAGCACTGGTCGGTAT-AACCGAAAAATAT
* *
26915738 GTGTGCCCAGCACTGGTCGATATAACCG-AAAATAA
1 GTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAT
* * * ** *
26915773 GTGCGCCCTA-CGCTGATTAGTAAAACC-AACAAATAT
1 GTGTGCCC-AGCACTGGTCGGTATAACCGAA-AAATAT
26915809 GTGTGCCCAGCACTGGT
1 GTGTGCCCAGCACTGGT
26915826 TGATCTAACC
Statistics
Matches: 194, Mismatches: 61, Indels: 21
0.70 0.22 0.08
Matches are distributed among these distances:
34 3 0.02
35 93 0.48
36 94 0.48
37 4 0.02
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.24
Consensus pattern (36 bp):
GTGTGCCCAGCACTGGTCGGTATAACCGAAAAATAT
Found at i:26915796 original size:142 final size:142
Alignment explanation
Indices: 26915528--26915882 Score: 451
Period size: 142 Copynumber: 2.5 Consensus size: 142
26915518 ATAATGAGTG
* * * * * * **
26915528 TGCCTAGCACTGGTTGGTATAACCAACAATAAATGTGCCCTGCTCTAGTCGGTAGGACCGAAAAA
1 TGCCCAGCACTGGTCGATATAACCGACAATAAATGTGCCCTGCGCTGGTCGGTACAACCGAAAAA
* * * * *
26915593 TATGTGTGCCCAGCACTAGTCGGTATAACCAAAAATAAATGCGCCCTGCGCTGGTTGGTAAAATA
66 TATGTGTGCCCAGCACTAGTCGATATAACCAAAAATAAATGCGCCCTACGCTGATTAGTAAAACA
*
26915658 AATAAATATGTA
131 AACAAATATGTA
**
26915670 TGCCCAGCACTGGTCGATATAATTGACAATAAATGTGCCCTGCGCTGGTCGGTTA-AACCGAAAA
1 TGCCCAGCACTGGTCGATATAACCGACAATAAATGTGCCCTGCGCTGGTCGG-TACAACCGAAAA
* * *
26915734 ATATGTGTGCCCAGCACTGGTCGATATAACCGAAAATAAGTGCGCCCTACGCTGATTAGTAAAAC
65 ATATGTGTGCCCAGCACTAGTCGATATAACCAAAAATAAATGCGCCCTACGCTGATTAGTAAAAC
* *
26915799 CAACAAATATGTG
130 AAACAAATATGTA
* * * * * *
26915812 TGCCCAGCACTGGTTGATCTAACCGACAATAAATGCGCCCTGCGTTGGTCTGTACAACCGAAAAG
1 TGCCCAGCACTGGTCGATATAACCGACAATAAATGTGCCCTGCGCTGGTCGGTACAACCGAAAAA
26915877 TATGTG
66 TATGTG
26915883 CGAAATCATT
Statistics
Matches: 183, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
141 2 0.01
142 179 0.98
143 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (142 bp):
TGCCCAGCACTGGTCGATATAACCGACAATAAATGTGCCCTGCGCTGGTCGGTACAACCGAAAAA
TATGTGTGCCCAGCACTAGTCGATATAACCAAAAATAAATGCGCCCTACGCTGATTAGTAAAACA
AACAAATATGTA
Found at i:26919448 original size:54 final size:54
Alignment explanation
Indices: 26919368--26919472 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
26919358 TGACTTGGGT
* * * * *
26919368 CACACGGCCGTGTCACAGGTCGTGTGCCAGACCGTGTAACTCTCTAACTTACAA
1 CACACGGCCGTGTCACAAGCCATGTGCCAGACCATGTAACTCACTAACTTACAA
* * * *
26919422 CACACGGTCGTGTCACAAGCCATGTGCTAGGCCATGTAACTCACTGACTTA
1 CACACGGCCGTGTCACAAGCCATGTGCCAGACCATGTAACTCACTAACTTA
26919473 ATACACTAGA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (54 bp):
CACACGGCCGTGTCACAAGCCATGTGCCAGACCATGTAACTCACTAACTTACAA
Found at i:26922902 original size:28 final size:28
Alignment explanation
Indices: 26922858--26922914 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 28
26922848 ATAAAAATAG
26922858 TGTCGTTGGATCTTTAAAGCAAACACAA
1 TGTCGTTGGATCTTTAAAGCAAACACAA
26922886 TGTCGTTGGATAC-TTAAAGCAAACACAA
1 TGTCGTTGGAT-CTTTAAAGCAAACACAA
26922914 T
1 T
26922915 AGTTGCAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 27 0.96
29 1 0.04
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (28 bp):
TGTCGTTGGATCTTTAAAGCAAACACAA
Found at i:26930171 original size:42 final size:42
Alignment explanation
Indices: 26930110--26930336 Score: 257
Period size: 42 Copynumber: 5.5 Consensus size: 42
26930100 CAGTGCCTAT
* * * *
26930110 CAGGTTTATTGCCAGTGAAACAATATCAGACTTTATGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
* *
26930152 CAGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
*
26930194 CAGGCTTAATGCTGGTGAAACAATATCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
* * *
26930236 CAGGCTTAATGCCGGTGAAAC-ATTTCAGACTATATGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
* * * *
26930277 CAGGC-TAAGTGCCGGTG-TACTGA-ATCAGGCTTTAAGTCTAG
1 CAGGCTTAA-TGCCGGTGAAAC-AATATCAGACTTTACGTCTAG
*
26930318 CAGGC-TAAGTGCCAGTGAA
1 CAGGCTTAA-TGCCGGTGAA
26930337 TCTGTTTAAA
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
40 5 0.03
41 60 0.37
42 96 0.60
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (42 bp):
CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
Found at i:26935969 original size:15 final size:15
Alignment explanation
Indices: 26935904--26935973 Score: 52
Period size: 15 Copynumber: 4.5 Consensus size: 15
26935894 TTGAATAATC
* *
26935904 TTTTCAATCCATAACA
1 TTTTC-ATCGATAACT
*
26935920 TTTTCAATCAATAA-T
1 TTTTC-ATCGATAACT
* * *
26935935 TTTCTTATCGACAACC
1 TTT-TCATCGATAACT
26935951 TTTTCATCGATAACT
1 TTTTCATCGATAACT
26935966 TTTTCATC
1 TTTTCATC
26935974 CTTTTCATTG
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
15 26 0.60
16 17 0.40
ACGTcount: A:0.30, C:0.23, G:0.03, T:0.44
Consensus pattern (15 bp):
TTTTCATCGATAACT
Found at i:26939838 original size:20 final size:20
Alignment explanation
Indices: 26939810--26939849 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26939800 TATGAGATAA
* *
26939810 TAATATTAATAAATTATTTT
1 TAATATTAACAAAATATTTT
*
26939830 TAATGTTAACAAAATATTTT
1 TAATATTAACAAAATATTTT
26939850 CTAGTTCCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (20 bp):
TAATATTAACAAAATATTTT
Found at i:26941897 original size:31 final size:31
Alignment explanation
Indices: 26941859--26941938 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 31
26941849 ACTATAAAAA
*
26941859 TAGTCACTTTTGTTTTTATTAGGTTACATTT
1 TAGTCACTTATGTTTTTATTAGGTTACATTT
* * * *
26941890 TAGTCACTTATG-TTTGA-AATGTTACGTTT
1 TAGTCACTTATGTTTTTATTAGGTTACATTT
* *
26941919 TAGTCACTTGTGTTATTATT
1 TAGTCACTTATGTTTTTATT
26941939 TTGTTACGAA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
29 20 0.53
30 7 0.18
31 11 0.29
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (31 bp):
TAGTCACTTATGTTTTTATTAGGTTACATTT
Found at i:26943207 original size:18 final size:16
Alignment explanation
Indices: 26943184--26943219 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
26943174 GTTTAAAATT
26943184 TTTAATTAATTAAATTTA
1 TTTAATTAA--AAATTTA
26943202 TTTAATTAAAAATTTA
1 TTTAATTAAAAATTTA
26943218 TT
1 TT
26943220 CTCATCCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTAATTAAAAATTTA
Found at i:26948662 original size:95 final size:95
Alignment explanation
Indices: 26948393--26948920 Score: 637
Period size: 95 Copynumber: 5.6 Consensus size: 95
26948383 ATTTAAGATC
* * * *
26948393 TTCATTCGGTTTAATATCATGAACAATTTTATCTAAGTTAGCTGATTTAATATCACAACTCCAAA
1 TTCATTCGATTTAACATCATGAACAATTTTATCTGAGTTAGCTGATTTAATATCACAGCTCCAAA
* * *
26948458 CGGCTCGTTGATTTAAGGTTGTAGCCTAAG
66 CGGCTCGCTGATTTAAGATCGTAGCCTAAG
* * *
26948488 TTCATTCGATTTAACATCATAAAC-ATTTTATTTGAGTTAGCTAATTTAATATCACAGCTCCAAA
1 TTCATTCGATTTAACATCATGAACAATTTTATCTGAGTTAGCTGATTTAATATCACAGCTCCAAA
26948552 CGGCTCGCTGATTTAAGATCGTAGCCTAAG
66 CGGCTCGCTGATTTAAGATCGTAGCCTAAG
* * * * * *
26948582 TTCACTCGATTTAACATCATGAACATTTTTATCTAAGTTAGGTGATTTAATATCGCCGCTCCAAA
1 TTCATTCGATTTAACATCATGAACAATTTTATCTGAGTTAGCTGATTTAATATCACAGCTCCAAA
* * * * *
26948647 CAGCTCGGTGATTTAAGATCGCAGCTTAAA
66 CGGCTCGCTGATTTAAGATCGTAGCCTAAG
* * * *
26948677 TTCATTCGATTTAACATCATAAACAATTTTATTTGAGTTAGCTAATTTAATATCACTGCTCCAAA
1 TTCATTCGATTTAACATCATGAACAATTTTATCTGAGTTAGCTGATTTAATATCACAGCTCCAAA
** * *
26948742 CAACTTGCTGATTTAAGATCATAGCCTAAG
66 CGGCTCGCTGATTTAAGATCGTAGCCTAAG
* * * ****
26948772 TTCATTCAATTTAACATCATCAACAATTTTATCTGAGTTAGCCGATTTAATATTGTTGCTCCAAA
1 TTCATTCGATTTAACATCATGAACAATTTTATCTGAGTTAGCTGATTTAATATCACAGCTCCAAA
* * * *
26948837 TGGCTTGCTAATTTAATATCGTAGTCC-AAG
66 CGGCTCGCTGATTTAAGATCGTAG-CCTAAG
* * * *
26948867 TACATTCGATTTAACATCATGAACAATTTTATTTGAGTTAGTTGATTTACTATC
1 TTCATTCGATTTAACATCATGAACAATTTTATCTGAGTTAGCTGATTTAATATC
26948921 GCTACTTTAA
Statistics
Matches: 369, Mismatches: 62, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
94 85 0.23
95 282 0.76
96 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (95 bp):
TTCATTCGATTTAACATCATGAACAATTTTATCTGAGTTAGCTGATTTAATATCACAGCTCCAAA
CGGCTCGCTGATTTAAGATCGTAGCCTAAG
Found at i:26948947 original size:284 final size:284
Alignment explanation
Indices: 26948393--26948953 Score: 721
Period size: 284 Copynumber: 2.0 Consensus size: 284
26948383 ATTTAAGATC
* * * *
26948393 TTCATTCGGTTTAATATCATGAACAATTTTATCTAAGTTAGCTGATTTAATATCACAACTCCAAA
1 TTCATTCGATTTAACATCATAAACAATTTTATCTAAGTTAGCTAATTTAATATCACAACTCCAAA
** * * ** * *
26948458 CGGCTCGTTGATTTAAGGTTGTAGCCTAAGTTCATTCGATTTAACATCATAAACATTTTATTTGA
66 CAACTCGCTGATTTAAGATCATAGCCTAAGTTCATTCAATTTAACATCATAAACATTTTATCTGA
* * *
26948523 GTTAGCTAATTTAATATCACAGCTCCAAACGGCTCGCTGATTTAAGATCGTAGCCTAAGTTCACT
131 GTTAGCCAATTTAATATCACAGCTCCAAACGGCTCGCTAATTTAAGATCGTAGCCTAAGTACACT
* *
26948588 CGATTTAACATCATGAACATTTTTATCTAAGTTAGGTGATTTAATATCGCCGCTCCAAACAGCTC
196 CGATTTAACATCATGAACAATTTTATCTAAGTTAGGTGATTTAATATCGCCACTCCAAACAGCTC
26948653 GGTGATTTAAGATCGCAGCTTAAA
261 GGTGATTTAAGATCGCAGCTTAAA
* * **
26948677 TTCATTCGATTTAACATCATAAACAATTTTATTTGAGTTAGCTAATTTAATATCACTGCTCCAAA
1 TTCATTCGATTTAACATCATAAACAATTTTATCTAAGTTAGCTAATTTAATATCACAACTCCAAA
* *
26948742 CAACTTGCTGATTTAAGATCATAGCCTAAGTTCATTCAATTTAACATCATCAACAATTTTATCTG
66 CAACTCGCTGATTTAAGATCATAGCCTAAGTTCATTCAATTTAACATCATAAAC-ATTTTATCTG
* **** * * *
26948807 AGTTAGCCGATTTAATATTGTTGCTCCAAATGGCTTGCTAATTTAATATCGTAGTCC-AAGTACA
130 AGTTAGCCAATTTAATATCACAGCTCCAAACGGCTCGCTAATTTAAGATCGTAG-CCTAAGTACA
* * * * * * ** *
26948871 TTCGATTTAACATCATGAACAATTTTATTTGAGTTAGTTGATTTACTATCGCTACTTTAAATAGC
194 CTCGATTTAACATCATGAACAATTTTATCTAAGTTAGGTGATTTAATATCGCCACTCCAAACAGC
*
26948936 TC-GTTATTTAAGATCGCA
259 TCGGTGATTTAAGATCGCA
26948954 ACTAATATTG
Statistics
Matches: 234, Mismatches: 41, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
284 117 0.50
285 115 0.49
286 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (284 bp):
TTCATTCGATTTAACATCATAAACAATTTTATCTAAGTTAGCTAATTTAATATCACAACTCCAAA
CAACTCGCTGATTTAAGATCATAGCCTAAGTTCATTCAATTTAACATCATAAACATTTTATCTGA
GTTAGCCAATTTAATATCACAGCTCCAAACGGCTCGCTAATTTAAGATCGTAGCCTAAGTACACT
CGATTTAACATCATGAACAATTTTATCTAAGTTAGGTGATTTAATATCGCCACTCCAAACAGCTC
GGTGATTTAAGATCGCAGCTTAAA
Found at i:26949034 original size:131 final size:131
Alignment explanation
Indices: 26948864--26949176 Score: 383
Period size: 131 Copynumber: 2.4 Consensus size: 131
26948854 ATCGTAGTCC
* * * *
26948864 AAGTACATTCGATTTAACATCATGAACAATTTTATTTGAGTTAGTTGATTTACTATCGCTACTTT
1 AAGTTCATTCGATTTAATATCATGAACAATTTTATTTGAGTTAGTTGATTTACTATCGCTAATCT
* * * ** * *
26948929 AAATAGCTCGTTATTTAAGATCGCAACTAATATTGTTAACGGCTCACTAATTTAAGACTGTAGCC
66 AAATAGCTAGTTATTCAAGATCACAACTAATATCATTAACGACTCACTAATTTAAGACTGCAGCC
26948994 T
131 T
* * ***
26948995 AAGTTCATTCGATTCAATATCATGAATAATTTTATTTGAGTTAGCCAATTTACTATCGCTAATCT
1 AAGTTCATTCGATTTAATATCATGAACAATTTTATTTGAGTTAGTTGATTTACTATCGCTAATCT
* * * * *
26949060 AAATTGCTAGTTATTCAATATCACAGCTGATATCATTAACGACTCACTAATTTAAGATTGCAGCC
66 AAATAGCTAGTTATTCAAGATCACAACTAATATCATTAACGACTCACTAATTTAAGACTGCAGCC
26949125 T
131 T
* * * * * *
26949126 AAGTTCATTCGGTTTAATATTATGAACAATCTCATCTGTGTTAGTTGATTT
1 AAGTTCATTCGATTTAATATCATGAACAATTTTATTTGAGTTAGTTGATTT
26949177 CTTAATCACT
Statistics
Matches: 150, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
131 150 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (131 bp):
AAGTTCATTCGATTTAATATCATGAACAATTTTATTTGAGTTAGTTGATTTACTATCGCTAATCT
AAATAGCTAGTTATTCAAGATCACAACTAATATCATTAACGACTCACTAATTTAAGACTGCAGCC
T
Found at i:26955107 original size:2 final size:2
Alignment explanation
Indices: 26955100--26955126 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26955090 TTAGCAATAT
26955100 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
26955127 TTTTCTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26963108 original size:19 final size:19
Alignment explanation
Indices: 26963085--26963136 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
26963075 ATTATTTGCA
*
26963085 AAAAAAAAAAAAGAACAAAG
1 AAAAAAGAAAAA-AACAAAG
*
26963105 AAAAAAGGAAAAAACAAAG
1 AAAAAAGAAAAAAACAAAG
26963124 AAAAAAGGAAAAA
1 AAAAAA-GAAAAA
26963137 TTTTTATTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (19 bp):
AAAAAAGAAAAAAACAAAG
Done.