Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 1 of 276
Found at i:5851 original size:78 final size:78
Alignment explanation
Indices: 5717--5876 Score: 302
Period size: 78 Copynumber: 2.1 Consensus size: 78
5707 ATGTTATGTT
5717 AATGCTTATGTTAGGAATAATAAAATAAAGAACATGGGCAATAAAATATTAGTGTTAGTAGGAGG
1 AATGCTTATGTTAGGAATAATAAAATAAAGAACATGGGCAATAAAATATTAGTGTTAGTAGGAGG
*
5782 AGAAATAAAAAAA
66 AGAAACAAAAAAA
*
5795 AATGNTTATGTTAGGAATAATAAAATAAAGAACATGGGCAATAAAATATTAGTGTTAGTAGGAGG
1 AATGCTTATGTTAGGAATAATAAAATAAAGAACATGGGCAATAAAATATTAGTGTTAGTAGGAGG
5860 AGAAACAAAAAAA
66 AGAAACAAAAAAA
5873 AATG
1 AATG
5877 TGTGTGGTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.51, C:0.04, G:0.21, T:0.24
Consensus pattern (78 bp):
AATGCTTATGTTAGGAATAATAAAATAAAGAACATGGGCAATAAAATATTAGTGTTAGTAGGAGG
AGAAACAAAAAAA
Found at i:6866 original size:41 final size:41
Alignment explanation
Indices: 6805--6954 Score: 187
Period size: 41 Copynumber: 3.7 Consensus size: 41
6795 TTGGGGTTTA
*
6805 AATCCGAGCTTGGTCGCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
6846 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * ** * * *
6887 AA-CCAAAC-CGAGTTTCGAAGGGCCATCGGGCCAATGTCAT
1 AATCCGAGCTTG-GTCTCGAAGGGCTTTTGAGCCAGTGTCAT
6927 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
6955 TCAGTCAGCG
Statistics
Matches: 89, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 29 0.33
41 58 0.65
42 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:20499 original size:31 final size:31
Alignment explanation
Indices: 20461--20519 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
20451 CATCTAATCG
20461 TGGTAGGTGATGACTGTTAGACTGTGGTCTT
1 TGGTAGGTGATGACTGTTAGACTGTGGTCTT
*
20492 TGGTAGGTGATGACTGTTAGATTGTGGT
1 TGGTAGGTGATGACTGTTAGACTGTGGT
20520 TTTACTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.17, C:0.07, G:0.37, T:0.39
Consensus pattern (31 bp):
TGGTAGGTGATGACTGTTAGACTGTGGTCTT
Found at i:22986 original size:47 final size:47
Alignment explanation
Indices: 22915--23919 Score: 1859
Period size: 47 Copynumber: 21.4 Consensus size: 47
22905 CCCTTCGGGA
** * * *
22915 CTTATCACATTTATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACA-TGTTCACTTTCATCACATTGGCCATTCGGC
* * * * *
22962 CTTATCTCACATACACATGCTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
* *
23009 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
*
23056 CTTATCACACATATACATGTTTACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23103 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23150 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23197 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23244 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23291 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23338 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23385 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23432 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23479 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23526 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23573 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23620 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23667 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23714 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23761 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23808 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
23855 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
*
23902 CCTATTCACACATATACA
1 CTTA-TCACACATATACA
23920 CTTTCACATT
Statistics
Matches: 940, Mismatches: 16, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
46 1 0.00
47 926 0.99
48 13 0.01
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
Found at i:44386 original size:15 final size:15
Alignment explanation
Indices: 44311--44392 Score: 65
Period size: 15 Copynumber: 5.4 Consensus size: 15
44301 AAAAATATCC
*
44311 AGAAGATCCAAGATAG
1 AGAA-ATCCAAGATAA
* **
44327 AGAAATCCGAGATGG
1 AGAAATCCAAGATAA
** *
44342 AGAAGCCCAAAATAA
1 AGAAATCCAAGATAA
*
44357 AGAAATCTAAGATAA
1 AGAAATCCAAGATAA
*
44372 AGAAATCCATGATAA
1 AGAAATCCAAGATAA
*
44387 GGAAAT
1 AGAAAT
44393 ACAATTTACA
Statistics
Matches: 51, Mismatches: 15, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
15 47 0.92
16 4 0.08
ACGTcount: A:0.52, C:0.12, G:0.21, T:0.15
Consensus pattern (15 bp):
AGAAATCCAAGATAA
Found at i:50171 original size:43 final size:43
Alignment explanation
Indices: 50087--50172 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
50077 GTCACAGGCA
* *
50087 TCGCATCCACAATGAACTTAGACCACTCAATGACCTTGGATGC
1 TCGCATCCACAATGAACTTAGACCACTCAACGACCTCGGATGC
* * *
50130 TCGCATCCATAATGAA-TTCGAACCACTCAACGAGCTCGGATGC
1 TCGCATCCACAATGAACTTAG-ACCACTCAACGACCTCGGATGC
50173 CACATATGTC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
TCGCATCCACAATGAACTTAGACCACTCAACGACCTCGGATGC
Found at i:51076 original size:18 final size:18
Alignment explanation
Indices: 51053--51091 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
51043 TTTCATATTC
*
51053 TACCATTAATCATCTAAA
1 TACCATTAATCATCCAAA
51071 TACCATTAATCATCCAAA
1 TACCATTAATCATCCAAA
51089 TAC
1 TAC
51092 TAACATGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.31
Consensus pattern (18 bp):
TACCATTAATCATCCAAA
Found at i:53132 original size:14 final size:15
Alignment explanation
Indices: 53109--53175 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
53099 AAAGTCGACT
*
53109 AGAAAACCAAAACA-
1 AGAAATCCAAAACAG
53123 AGAAATCCAAAACAG
1 AGAAATCCAAAACAG
* ** *
53138 AAAAATCCATGACAA
1 AGAAATCCAAAACAG
* * *
53153 AAAAATCCAAAATAT
1 AGAAATCCAAAACAG
53168 AGAAATCC
1 AGAAATCC
53176 GATATACATT
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
14 13 0.31
15 29 0.69
ACGTcount: A:0.63, C:0.19, G:0.07, T:0.10
Consensus pattern (15 bp):
AGAAATCCAAAACAG
Found at i:53145 original size:15 final size:14
Alignment explanation
Indices: 53111--53164 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
53101 AGTCGACTAG
53111 AAAA-CCAAAACAA
1 AAAATCCAAAACAA
*
53124 GAAATCCAAAACAGA
1 AAAATCCAAAACA-A
**
53139 AAAATCCATGACAAA
1 AAAATCCAAAAC-AA
53154 AAAATCCAAAA
1 AAAATCCAAAA
53165 TATAGAAATC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
13 3 0.09
14 8 0.25
15 20 0.62
16 1 0.03
ACGTcount: A:0.67, C:0.20, G:0.06, T:0.07
Consensus pattern (14 bp):
AAAATCCAAAACAA
Found at i:59269 original size:63 final size:63
Alignment explanation
Indices: 59191--59378 Score: 367
Period size: 63 Copynumber: 3.0 Consensus size: 63
59181 AGGATAATCT
59191 GCATTGGGGATCATTGCATTTAGTTTAATATATTTAATTTTAATCATCACTTCTCAATCATAA
1 GCATTGGGGATCATTGCATTTAGTTTAATATATTTAATTTTAATCATCACTTCTCAATCATAA
*
59254 GCATTGGGGATCATTGCATTTAGTTTAATATATTTAATTTTAATCATCACTTGTCAATCATAA
1 GCATTGGGGATCATTGCATTTAGTTTAATATATTTAATTTTAATCATCACTTCTCAATCATAA
59317 GCATTGGGGATCATTGCATTTAGTTTAATATATTTAATTTTAATCATCACTTCTCAATCATA
1 GCATTGGGGATCATTGCATTTAGTTTAATATATTTAATTTTAATCATCACTTCTCAATCATA
59379 TTGTATTTTT
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 123 1.00
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (63 bp):
GCATTGGGGATCATTGCATTTAGTTTAATATATTTAATTTTAATCATCACTTCTCAATCATAA
Found at i:61575 original size:42 final size:42
Alignment explanation
Indices: 61464--61585 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 42
61454 TACCATACCA
* ** *
61464 ATGCTATATCCCAGATATGGTCTTACTTGTAATCTCGTATCG
1 ATGCAATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
61506 ATGGCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 AT-GCAATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
* * * *
61549 ATGCCATATCCCAAATATGGTTTTACACATAATCTCA
1 ATGCAATATCCCAGATATGGTCTTACACGTAATCTCA
61586 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCAATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:66786 original size:42 final size:42
Alignment explanation
Indices: 66677--66798 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
66667 TACCGTACCA
* *
66677 ATGCCATATCCCAGATATGGTCTTGCATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * *
66719 ATGGCAATAGCCCAGCTATGGTCTTACATG-AAGTCTTATATCG
1 AT-GCCATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
66762 ATGCCATATCCCCGATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
66799 GTAACCCTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:75307 original size:22 final size:22
Alignment explanation
Indices: 75280--75347 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 22
75270 TTGCTGCAGA
75280 GTCTACGGCGTTGAGCCGTCCT
1 GTCTACGGCGTTGAGCCGTCCT
* *
75302 GTCTACGGCATTGA-CCTGTCTT
1 GTCTACGGCGTTGAGCC-GTCCT
* *
75324 GTCTACGACGTTGAGTCGTCCT
1 GTCTACGGCGTTGAGCCGTCCT
75346 GT
1 GT
75348 TGACTCAGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
21 2 0.05
22 35 0.92
23 1 0.03
ACGTcount: A:0.12, C:0.28, G:0.28, T:0.32
Consensus pattern (22 bp):
GTCTACGGCGTTGAGCCGTCCT
Found at i:75509 original size:27 final size:27
Alignment explanation
Indices: 75461--75513 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
75451 ATATTTGATA
*
75461 CTGATTCTGTACTGAGCTTAGGCCCAC
1 CTGATTCTGTAATGAGCTTAGGCCCAC
*
75488 CTGATTCTGTTAATGGGC-TAGGCCCA
1 CTGATTCTG-TAATGAGCTTAGGCCCA
75514 ACTATTACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.19, C:0.26, G:0.25, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTAATGAGCTTAGGCCCAC
Found at i:80775 original size:19 final size:19
Alignment explanation
Indices: 80738--80776 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
80728 ATTCAAAAAT
* * *
80738 TTTTAAGTTTTTGTTTAAA
1 TTTTAAATTTTTATGTAAA
80757 TTTTAAATTTTTATGTAAA
1 TTTTAAATTTTTATGTAAA
80776 T
1 T
80777 AAAGGAGGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (19 bp):
TTTTAAATTTTTATGTAAA
Found at i:80898 original size:11 final size:11
Alignment explanation
Indices: 80882--80906 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80872 TGCCGCCCAA
80882 GTAACCTTAAT
1 GTAACCTTAAT
80893 GTAACCTTAAT
1 GTAACCTTAAT
80904 GTA
1 GTA
80907 GCTAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (11 bp):
GTAACCTTAAT
Found at i:85854 original size:27 final size:27
Alignment explanation
Indices: 85772--85855 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
85762 CCTTAGGGGC
*
85772 ATTTTGGTAATTTTACAAGTCGAAGGT
1 ATTTTGGTAATTTTACAAGTCAAAGGT
* * * * * **
85799 AATTTGATAATTTCACAAATTAGGGGT
1 ATTTTGGTAATTTTACAAGTCAAAGGT
85826 ATTTTGGTAATTTTACAAGTCAAAGGT
1 ATTTTGGTAATTTTACAAGTCAAAGGT
85853 ATT
1 ATT
85856 CAGTAATTTT
Statistics
Matches: 42, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.40
Consensus pattern (27 bp):
ATTTTGGTAATTTTACAAGTCAAAGGT
Found at i:85889 original size:53 final size:54
Alignment explanation
Indices: 85772--85892 Score: 138
Period size: 53 Copynumber: 2.3 Consensus size: 54
85762 CCTTAGGGGC
* * * * *
85772 ATTTTGGTAATTTTACAAGTCGAAGGTAATTTGATAATTTCACAAATTAGGGGT
1 ATTTTGGTAATTTTACAAGTCAAAGGTAATTAGATAATTTCACAAACTAAGGAT
***
85826 ATTTTGGTAATTTTACAAGTCAAAGGT-ATTCAG-TAATTTTGTAAACTAAGGAT
1 ATTTTGGTAATTTTACAAGTCAAAGGTAATT-AGATAATTTCACAAACTAAGGAT
*
85879 ATTTTAGTAATTTT
1 ATTTTGGTAATTTT
85893 GTAAATCAAG
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 30 0.53
54 27 0.47
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (54 bp):
ATTTTGGTAATTTTACAAGTCAAAGGTAATTAGATAATTTCACAAACTAAGGAT
Found at i:85916 original size:27 final size:27
Alignment explanation
Indices: 85848--85919 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
85838 TTACAAGTCA
85848 AAGG-TATTC-AGTAATTTTGTAAACT
1 AAGGATATTCTAGTAATTTTGTAAACT
*
85873 AAGGATATTTTAGTAATTTTGTAAA-T
1 AAGGATATTCTAGTAATTTTGTAAACT
*
85899 CAAGGGTATATCTA-TAATTTT
1 -AAGGATAT-TCTAGTAATTTT
85920 CCTTTATTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 4 0.10
26 5 0.12
27 28 0.70
28 3 0.08
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (27 bp):
AAGGATATTCTAGTAATTTTGTAAACT
Found at i:86298 original size:29 final size:29
Alignment explanation
Indices: 86213--86303 Score: 100
Period size: 29 Copynumber: 3.2 Consensus size: 29
86203 AAGTCTACAT
*
86213 ACATGCATATGGCCCA-CTAGGCCCAATC
1 ACATTCATATGGCCCATCTAGGCCCAATC
** *
86241 TTATTCATATGGCCCAT-TAGGTCCAAATC
1 ACATTCATATGGCCCATCTAGG-CCCAATC
86270 ACATTCATATGGCCCATCT-GGCCCGAATC
1 ACATTCATATGGCCCATCTAGGCCC-AATC
86299 A-ATTC
1 ACATTC
86304 CAAGCCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
28 23 0.44
29 28 0.54
30 1 0.02
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATCTAGGCCCAATC
Found at i:90898 original size:30 final size:30
Alignment explanation
Indices: 90864--90925 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
90854 TATCGAGATG
90864 TGATTACATGGAAGACCATGTATGGGACAT
1 TGATTACATGGAAGACCATGTATGGGACAT
* *
90894 TGATTACATGTAAGACCATGTCTGGGACAT
1 TGATTACATGGAAGACCATGTATGGGACAT
90924 TG
1 TG
90926 GAATTGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (30 bp):
TGATTACATGGAAGACCATGTATGGGACAT
Found at i:90963 original size:43 final size:43
Alignment explanation
Indices: 90902--91041 Score: 149
Period size: 43 Copynumber: 3.3 Consensus size: 43
90892 ATTGATTACA
90902 TGTAAGACCATGTCTGGGACATTGGAATTG-TATTATGAATACG
1 TGTAAGACCATGTCTGGGACATTGGAATTGTTA-TATGAATACG
* * * **
90945 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGAATTGTTATATGAATACG
* * * * * *
90988 TGTAAGACCCTGTCTGGGACAGTGGTATTGATATGTG-ATAACA
1 TGTAAGACCATGTCTGGGACATTGGAATTGTTATATGAAT-ACG
91031 TGTAAGACCAT
1 TGTAAGACCAT
91042 ATATGGGATA
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 76 0.96
44 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGAATTGTTATATGAATACG
Found at i:93374 original size:54 final size:54
Alignment explanation
Indices: 93270--93374 Score: 122
Period size: 54 Copynumber: 1.9 Consensus size: 54
93260 ATTTTAATAA
* * * * *
93270 TAAATTGAGTTTAATTAAAGTAGTTGTCCTAGTTTATTTATGTTATATTTGTTG
1 TAAATTGAGTTTAATTAAAGTAATTGTCCTAATATATTTAGGATATATTTGTTG
* **
93324 TAAATTGTGTTTAATTAAAGTAATTGTGTTTAATATATTTAGGATA-ATTTG
1 TAAATTGAGTTTAATTAAAGTAATTGT-CCTAATATATTTAGGATATATTTG
93375 CATTGGCGAT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
54 30 0.71
55 12 0.29
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.50
Consensus pattern (54 bp):
TAAATTGAGTTTAATTAAAGTAATTGTCCTAATATATTTAGGATATATTTGTTG
Found at i:94739 original size:25 final size:25
Alignment explanation
Indices: 94695--94743 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
94685 TTAAAATATG
* * *
94695 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
94720 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
94744 GTTTAATTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:94921 original size:25 final size:24
Alignment explanation
Indices: 94868--94938 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 24
94858 AGGAAGTGCA
*
94868 AAAAAGGCTTTGCCCCAGTTCACC
1 AAAAAGGCTTTGCCCCAGTTTACC
* *
94892 GAAAAGAGCTTTGCCCCAGTTTATC
1 AAAAAG-GCTTTGCCCCAGTTTACC
* *
94917 AAAAAGGGCTTTACCCTAGTTT
1 AAAAA-GGCTTTGCCCCAGTTT
94939 TTAGAAGAGG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
24 5 0.13
25 33 0.85
26 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTACC
Found at i:95223 original size:30 final size:31
Alignment explanation
Indices: 95156--95238 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
95146 CGCTTACAGT
* * *
95156 AAAGGCTTCCGCCTAGTGATATGAATTCTGA
1 AAAGGCTTCAGCCCAGTGATATGAATTATGA
*
95187 AAAGGCTTCAGCCCAGTGTTATGAATTATG-
1 AAAGGCTTCAGCCCAGTGATATGAATTATGA
95217 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
95239 TTGAGACTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 4 0.09
30 17 0.36
31 26 0.55
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGAATTATGA
Found at i:101595 original size:22 final size:22
Alignment explanation
Indices: 101564--101620 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
101554 CATCCAGTTT
*
101564 CTTTCTTTTCATCTACTACTTC
1 CTTTCCTTTCATCTACTACTTC
101586 CTTTCCTTTCATCTACTACTTC
1 CTTTCCTTTCATCTACTACTTC
101608 CTTTCCTTTCATC
1 CTTTCCTTTCATC
101621 CCCCTTGCCG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.53
Consensus pattern (22 bp):
CTTTCCTTTCATCTACTACTTC
Found at i:102691 original size:11 final size:10
Alignment explanation
Indices: 102659--102695 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
102649 CATGAGATTT
102659 TGATAT-ACA
1 TGATATGACA
102668 TGATATGACA
1 TGATATGACA
102678 TGATATGCACA
1 TGATATG-ACA
102689 TGATATG
1 TGATATG
102696 TTATGAGGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:102691 original size:21 final size:21
Alignment explanation
Indices: 102665--102715 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
102655 ATTTTGATAT
*
102665 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
** *
102686 ACATGATATGTTATGAGGTGC
1 ACATGATATGACATGAGATGC
102707 ACATGATAT
1 ACATGATAT
102716 ACTCATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:102832 original size:25 final size:25
Alignment explanation
Indices: 102761--102832 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
102751 GGAGGAAGTG
*
102761 CAAAAAGGGCTTTGCCCCAGTCCAC
1 CAAAAAGGGCTTTGCCCCAGTTCAC
* * *
102786 CGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTCAC
102811 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
102833 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTCAC
Found at i:102845 original size:24 final size:24
Alignment explanation
Indices: 102763--102859 Score: 83
Period size: 25 Copynumber: 4.0 Consensus size: 24
102753 AGGAAGTGCA
* *
102763 AAAAG-GGCTTTGCCCCAGTCCACC
1 AAAAGAGGCTTTGCCCCAGT-TATC
102787 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAG-TTATC
*
102812 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
102836 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
102860 GATAAAGCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
24 19 0.31
25 42 0.68
26 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:103098 original size:31 final size:31
Alignment explanation
Indices: 103051--103133 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 31
103041 GGCTTACAGT
* * *
103051 AAAGGCTTTGGCCCAGTGATATTAATTTTGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
* *
103082 AAAGTCTTCGGCCCAGTGTTATGAATTATG-
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
* *
103112 AAAGGCTTCAGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
103134 TTGAGACTGA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
29 4 0.09
30 14 0.33
31 25 0.58
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTATGA
Found at i:104050 original size:17 final size:19
Alignment explanation
Indices: 104028--104072 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
104018 TAACTTGTCT
104028 CTCTTTTCTTTCTG-C-AC
1 CTCTTTTCTTTCTGTCAAC
104045 CTCTTTTC-TTCTGTCAAC
1 CTCTTTTCTTTCTGTCAAC
*
104063 CACTTTTCTT
1 CTCTTTTCTT
104073 ATCATCATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.21
17 9 0.38
18 9 0.38
19 1 0.04
ACGTcount: A:0.09, C:0.33, G:0.04, T:0.53
Consensus pattern (19 bp):
CTCTTTTCTTTCTGTCAAC
Found at i:104070 original size:18 final size:16
Alignment explanation
Indices: 104030--104072 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
104020 ACTTGTCTCT
*
104030 CTTTTCTTTCTGCACCT
1 CTTTTC-TTCTGCACCA
104047 CTTTTCTTCTGTCAACCA
1 CTTTTCTTCTG-C-ACCA
104065 CTTTTCTT
1 CTTTTCTT
104073 ATCATCATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 5 0.22
17 7 0.30
18 11 0.48
ACGTcount: A:0.09, C:0.33, G:0.05, T:0.53
Consensus pattern (16 bp):
CTTTTCTTCTGCACCA
Found at i:107454 original size:45 final size:45
Alignment explanation
Indices: 107358--107563 Score: 292
Period size: 45 Copynumber: 4.6 Consensus size: 45
107348 CCGGTATTTC
* * * *
107358 GCCTGCTAGGCTCGAA-GCCCG-ATA-TCATTTCATCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATCATA
* * *
107401 GCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACTGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
*
107446 GACTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
107491 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
* *
107536 GCCTACTAGGCTCAAAGTCCCGAATAGT
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT
107564 GCCGTACAAT
Statistics
Matches: 150, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
43 16 0.11
44 5 0.03
45 128 0.85
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
Found at i:116099 original size:14 final size:14
Alignment explanation
Indices: 116080--116120 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
116070 ACTCGTTTTA
116080 TTTTTATTTTTATT
1 TTTTTATTTTTATT
*
116094 TTTTTACTTTTATT
1 TTTTTATTTTTATT
116108 TCTATTTATTTTT
1 T-T-TTTATTTTT
116121 GAAGACTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 14 0.61
15 1 0.04
16 8 0.35
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:116104 original size:20 final size:21
Alignment explanation
Indices: 116075--116119 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
116065 TTTAAACTCG
* *
116075 TTTTATTTTTATTTTTATTT-
1 TTTTACTTTTATTTCTATTTA
116095 TTTTACTTTTATTTCTATTTA
1 TTTTACTTTTATTTCTATTTA
116116 TTTT
1 TTTT
116120 TGAAGACTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTACTTTTATTTCTATTTA
Found at i:120011 original size:32 final size:32
Alignment explanation
Indices: 119962--120044 Score: 112
Period size: 32 Copynumber: 2.6 Consensus size: 32
119952 GGTTTGATAT
* * *
119962 TGAAATGTGCTAGGCCCAACTAATACTGGTTC
1 TGAAATGAGCTAGGCCCAACCAATACTGATTC
* * *
119994 TGATATGGGCTAGGCCCAACCAATATTGATTC
1 TGAAATGAGCTAGGCCCAACCAATACTGATTC
120026 TGAAATGAGCTAGGCCCAA
1 TGAAATGAGCTAGGCCCAA
120045 TTAAGACTCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (32 bp):
TGAAATGAGCTAGGCCCAACCAATACTGATTC
Found at i:124835 original size:32 final size:32
Alignment explanation
Indices: 124784--124872 Score: 115
Period size: 32 Copynumber: 2.8 Consensus size: 32
124774 CATATGGGTT
*
124784 TGATATTGAAATGGGCTAGGCCCAACTGATAC
1 TGATTTTGAAATGGGCTAGGCCCAACTGATAC
* * * *
124816 TGGTTTTGATATGGGCTAGGCCCAATTGATAT
1 TGATTTTGAAATGGGCTAGGCCCAACTGATAC
* *
124848 TGATTCTGAGATGGGCTAGGCCCAA
1 TGATTTTGAAATGGGCTAGGCCCAA
124873 TTAAGACTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (32 bp):
TGATTTTGAAATGGGCTAGGCCCAACTGATAC
Found at i:124873 original size:32 final size:32
Alignment explanation
Indices: 124794--124874 Score: 117
Period size: 32 Copynumber: 2.5 Consensus size: 32
124784 TGATATTGAA
* * * *
124794 ATGGGCTAGGCCCAACTGATACTGGTTTTGAT
1 ATGGGCTAGGCCCAATTGATACTGATTCTGAG
*
124826 ATGGGCTAGGCCCAATTGATATTGATTCTGAG
1 ATGGGCTAGGCCCAATTGATACTGATTCTGAG
124858 ATGGGCTAGGCCCAATT
1 ATGGGCTAGGCCCAATT
124875 AAGACTATGA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (32 bp):
ATGGGCTAGGCCCAATTGATACTGATTCTGAG
Found at i:130936 original size:43 final size:42
Alignment explanation
Indices: 130874--131028 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 42
130864 TACAGTTCCA
* ** *
130874 ATGCCATATCCCAGATATGGTCTTACATTTAA-TCTCGTATCG
1 ATGCCATAGCCCAGATATGGTCTTACA-CAAAGTCTCATATCG
* *
130916 ATGCCAATAGCCCAGCTATGGTCTTACACAAAGTCTCATATCA
1 ATGCC-ATAGCCCAGATATGGTCTTACACAAAGTCTCATATCG
* * *
130959 ATGCCATATCCCAGATATGGTCTTATACGAAGTCTCATA-CTG
1 ATGCCATAGCCCAGATATGGTCTTACACAAAGTCTCATATC-G
131001 ATGCCATAGCCCAGATATGGTCTTACAC
1 ATGCCATAGCCCAGATATGGTCTTACAC
131029 GTAGTTTTAG
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 63 0.65
43 33 0.34
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACAAAGTCTCATATCG
Found at i:134934 original size:6 final size:6
Alignment explanation
Indices: 134923--135139 Score: 189
Period size: 6 Copynumber: 35.8 Consensus size: 6
134913 AACCAAAATG
*
134923 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
134971 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAAAC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
135020 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * * * *
135068 AGAATC AGAATC TGAATT ACGTGA-C AGAATC AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
135117 AGTAA-C AGAATC AGAATC AGAAT
1 AG-AATC AGAATC AGAATC AGAAT
135140 GTAAATGCAA
Statistics
Matches: 171, Mismatches: 22, Indels: 36
0.75 0.10 0.16
Matches are distributed among these distances:
5 13 0.08
6 145 0.85
7 11 0.06
8 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:134938 original size:30 final size:29
Alignment explanation
Indices: 134902--135139 Score: 254
Period size: 30 Copynumber: 8.1 Consensus size: 29
134892 AAGAAACATT
* * *
134902 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
134932 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
134962 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* *
134992 ATCAGAATTAGGTGACAGAAACAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
135023 ATC---A--GTAACAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
*
135047 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
* *
135077 ATCTGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
*
135108 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
135138 AT
1 AT
135140 GTAAATGCAA
Statistics
Matches: 178, Mismatches: 18, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
24 21 0.12
27 1 0.01
28 1 0.01
29 1 0.01
30 103 0.58
31 51 0.29
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:135136 original size:85 final size:85
Alignment explanation
Indices: 134923--135136 Score: 358
Period size: 85 Copynumber: 2.5 Consensus size: 85
134913 AACCAAAATG
*
134923 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
134988 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
*
135008 AGAAACAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
135073 CAGAATCTGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
**
135093 AGAATCAGAATCAGAATCAGTATTAGTAA-CAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAGTAACAG-AATCAGAATCAGAATCAG
135137 AATGTAAATG
Statistics
Matches: 121, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
85 119 0.98
86 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:135294 original size:27 final size:26
Alignment explanation
Indices: 135257--135322 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
135247 AGCATGGCTG
*
135257 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
135283 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
135310 CCAGAATCAGATA
1 CCAGAA-CAGATA
135323 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:135327 original size:27 final size:27
Alignment explanation
Indices: 135257--135330 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
135247 AGCATGGCTG
* *
135257 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
135283 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
135310 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
135331 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:135337 original size:27 final size:27
Alignment explanation
Indices: 135281--135338 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
135271 GTGACAGAGT
* * *
135281 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
135308 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
135335 CACC
1 CACC
135339 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:135532 original size:22 final size:22
Alignment explanation
Indices: 135495--135553 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
135485 GTAAATACAT
*
135495 TTGGCACGAAGCCATAGTCAAGG
1 TTGGCACAAAGCCATA-TCAAGG
* **
135518 -TGGCACAAAGTCATATTTAGG
1 TTGGCACAAAGCCATATCAAGG
135539 TTGGCACAAAGCCAT
1 TTGGCACAAAGCCAT
135554 TAATAACGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 4 0.13
22 26 0.87
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATATCAAGG
Found at i:135680 original size:27 final size:26
Alignment explanation
Indices: 135641--135724 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 26
135631 TCGATCGGTC
* *
135641 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGACAAAGCCACCAA
* *
135667 ATACAGATATTGTGGCAAAGCCACCAG
1 A-ACAGATATTGTGACAAAGCCACCAA
* * *
135694 AACAGATATTTGTGGCATAGCCATCAA
1 AACAGATA-TTGTGACAAAGCCACCAA
135721 AACA
1 AACA
135725 CTTCCTCCGT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGACAAAGCCACCAA
Found at i:135952 original size:27 final size:27
Alignment explanation
Indices: 135922--136117 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
135912 AGGGTAGAAT
* * *
135922 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
135949 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
135976 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
136003 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
136030 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
136057 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
136084 AGAAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
136111 AGTAATT
1 GGTAATT
136118 TCACAATCAA
Statistics
Matches: 147, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:136558 original size:27 final size:27
Alignment explanation
Indices: 136130--136550 Score: 510
Period size: 27 Copynumber: 15.6 Consensus size: 27
136120 ACAATCAAGT
136130 GTAAAACGGTAATTCTGTAAATCGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
* *
136157 GTAAAACGATAATTTTGTAAA-CTGAGG
1 GTAAAACGGTAATTCTGTAAATC-GAGG
* * * *
136184 GTAAACCAGTAATTCTATAAATCAAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
* * * **
136211 GTAAAATGATAATTTTACAAATCGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
136238 GTAAAACGGTAATTCTGTAAATCGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
* *
136265 GTAAAACAGTAATTCTCTAAA-CTGAGG
1 GTAAAACGGTAATTCTGTAAATC-GAGG
* *
136292 GTAAAATGGTAATTCTGTAAATTGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
**
136319 GTAAAACGGTAAGTT-TACAAATCGAGG
1 GTAAAACGGTAA-TTCTGTAAATCGAGG
* * *
136346 ATAAAACGATAATTCTATAAATCGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
* *
136373 GTAAAACAGTAATTCTGTAAA-CTAAGG
1 GTAAAACGGTAATTCTGTAAATC-GAGG
136400 GTAAAACGGTAATTCTGTAAATCGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
*
136427 GTAAAACAGTAATTCTGTAAA-CTGAGG
1 GTAAAACGGTAATTCTGTAAATC-GAGG
*
136454 GTAAAACGGTAATTTTGTAAATCGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
* * **
136481 GTAAAACGATAATTTTAAAAATCGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
136508 GTAAAACGGTAATTCTGTAAATCGAGG
1 GTAAAACGGTAATTCTGTAAATCGAGG
136535 GTAAAACGGTAATTCT
1 GTAAAACGGTAATTCT
136551 AAAAATCGGG
Statistics
Matches: 334, Mismatches: 50, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.02
27 323 0.97
28 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
GTAAAACGGTAATTCTGTAAATCGAGG
Found at i:138127 original size:35 final size:35
Alignment explanation
Indices: 138081--138152 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
138071 ATCTCTGCCT
*
138081 CAACAAAACAATTTCATCAAAGTTAGGAGATATCA
1 CAACAAAACAATTTCATCAAAGTTACGAGATATCA
138116 CAACAAAACAATTTCATCAAAGTTACGAGATATCA
1 CAACAAAACAATTTCATCAAAGTTACGAGATATCA
138151 CA
1 CA
138153 CTATCACAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.22
Consensus pattern (35 bp):
CAACAAAACAATTTCATCAAAGTTACGAGATATCA
Found at i:138637 original size:30 final size:30
Alignment explanation
Indices: 138603--138660 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
138593 CAAATTGAAG
*
138603 TCACACGGCCAAGACACATACCCGTGTCCT
1 TCACACGGCCAAGACACACACCCGTGTCCT
* *
138633 TCACACGGCTAAGACACACGCCCGTGTC
1 TCACACGGCCAAGACACACACCCGTGTC
138661 TCTGCCCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.40, G:0.19, T:0.16
Consensus pattern (30 bp):
TCACACGGCCAAGACACACACCCGTGTCCT
Found at i:140295 original size:42 final size:42
Alignment explanation
Indices: 140236--140350 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 42
140226 GTTCCAATGC
*
140236 CATATCCCAGATATGGTCTTACACGAAGTCTCATATC-GATGA
1 CATATCCCAGATATGGTCTTACACAAAGTCTCAT-TCTGATGA
** **
140278 CATATCCCAGATATGGTCTTTTACAAAGTCTCATTCTGATTC
1 CATATCCCAGATATGGTCTTACACAAAGTCTCATTCTGATGA
* * * *
140320 CATATTCCAGATATGTTCCTACACATAGTCT
1 CATATCCCAGATATGGTCTTACACAAAGTCT
140351 TAGTAACCCT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 2 0.03
42 59 0.97
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACAAAGTCTCATTCTGATGA
Found at i:145426 original size:28 final size:28
Alignment explanation
Indices: 145386--145441 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
145376 CAAGAAGGAA
145386 TGAGATGCCCTTAACAAACATTTTGGAG
1 TGAGATGCCCTTAACAAACATTTTGGAG
145414 TGAGATGCCCTTAACAAACATTTTGGAG
1 TGAGATGCCCTTAACAAACATTTTGGAG
145442 ATTGAATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (28 bp):
TGAGATGCCCTTAACAAACATTTTGGAG
Found at i:147811 original size:20 final size:21
Alignment explanation
Indices: 147786--147825 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
147776 CTCTTGAAAC
*
147786 AGGGC-ACACGCCCATGTGGA
1 AGGGCAACACACCCATGTGGA
147806 AGGGCAACACACCCATGTGG
1 AGGGCAACACACCCATGTGG
147826 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.30, G:0.33, T:0.10
Consensus pattern (21 bp):
AGGGCAACACACCCATGTGGA
Found at i:156741 original size:27 final size:27
Alignment explanation
Indices: 156710--156788 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
156700 TACCAAAGGG
156710 TAGAATTACTGTTTTACCCTTGATTTA
1 TAGAATTACTGTTTTACCCTTGATTTA
*
156737 TAGAATTACTGTTTTACCCTCGATTTA
1 TAGAATTACTGTTTTACCCTTGATTTA
* *
156764 CAAAATTACTGTTTTACCCTTGATT
1 TAGAATTACTGTTTTACCCTTGATT
156789 GTGAAATTAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.27, C:0.18, G:0.10, T:0.46
Consensus pattern (27 bp):
TAGAATTACTGTTTTACCCTTGATTTA
Found at i:156810 original size:27 final size:27
Alignment explanation
Indices: 156780--156888 Score: 96
Period size: 27 Copynumber: 4.1 Consensus size: 27
156770 TACTGTTTTA
* *
156780 CCCTTGATTGTGAAATTACTGAAATAC
1 CCCTAGATTGTGAAATTACCGAAATAC
* **
156807 CCCTATAGGGT-AGAATTACC-AAATAC
1 CCCTAGATTGTGA-AATTACCGAAATAC
* * *
156833 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGATTGTGAAATTACCGAAATAC
* * *
156860 CACTAGTTTATGAAATTACCGAAATAC
1 CCCTAGATTGTGAAATTACCGAAATAC
156887 CC
1 CC
156889 TCAATTTGTA
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
26 21 0.32
27 44 0.68
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (27 bp):
CCCTAGATTGTGAAATTACCGAAATAC
Found at i:156849 original size:26 final size:27
Alignment explanation
Indices: 156820--156911 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
156810 TATAGGGTAG
156820 AATTACC-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
156846 AATTACCAAAATACCACTAGTTTATGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
156873 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
156900 AATTACCAAAAT
1 AATTACCAAAAT
156912 GCACCTAATT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
26 10 0.18
27 45 0.82
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:156921 original size:27 final size:26
Alignment explanation
Indices: 156820--156922 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 26
156810 TATAGGGTAG
*
156820 AATTACC-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAATTTGTAA
* * *
156846 AATTACCAAAATACCACTAGTTTATGA
1 AATTACCAAAATACC-CTAATTTGTAA
*
156873 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AATTTGTAA
*
156900 AATTACCAAAATGCACCTAATTT
1 AATTACCAAAATAC-CCTAATTT
156923 ACACAATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
26 11 0.17
27 51 0.78
28 3 0.05
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCTAATTTGTAA
Found at i:156931 original size:54 final size:54
Alignment explanation
Indices: 156820--156941 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
156810 TATAGGGTAG
* * *
156820 AATTACC-AAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGTTTATGA
1 AATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCACTAATTTATCA
*
156873 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAAT-GCACCTAATTTA-CA
1 AATTACCGAAATACCCCT-AATTTGTAAAATTACCAAAATACCA-CTAATTTATCA
**
156926 CAATTATAGAAATACC
1 -AATTACCGAAATACC
156942 ATTGGTTTAC
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
53 14 0.24
54 43 0.74
55 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
AATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCACTAATTTATCA
Found at i:156950 original size:27 final size:27
Alignment explanation
Indices: 156920--156976 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
156910 ATGCACCTAA
*
156920 TTTACACAATTA-TAGAAATACCATTGG
1 TTTACAAAATTACTA-AAATACCATTGG
*
156947 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCATTGG
156974 TTT
1 TTT
156977 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCATTGG
Found at i:157062 original size:27 final size:26
Alignment explanation
Indices: 157032--157090 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
157022 CCCTAATAGT
157032 TAAAAAGACCGTAA-AGCCCCTGTAGGG
1 TAAAAAG-CCGTAATA-CCCCTGTAGGG
* *
157059 TAAAGTAGCCGTAATACCCCTGTATGG
1 TAAA-AAGCCGTAATACCCCTGTAGGG
157086 TAAAA
1 TAAAA
157091 TGACGAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
TAAAAAGCCGTAATACCCCTGTAGGG
Found at i:157979 original size:24 final size:25
Alignment explanation
Indices: 157903--157972 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
157893 AGGAAGTGCT
* * *
157903 AAAAA-GGCTATGCCCTAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTATC
*
157927 GAAAAGGGCTTTGCCCCAGTTTATC
1 AAAAAGGGCTTTGCCCCAGTTTATC
157952 AAAAAGGGCTTTGCCCCAGTT
1 AAAAAGGGCTTTGCCCCAGTT
157973 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 4 0.10
25 36 0.90
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTATC
Found at i:157985 original size:24 final size:25
Alignment explanation
Indices: 157903--157985 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
157893 AGGAAGTGCT
* * *
157903 AAAA-AGGCTATGCCCTAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
157927 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
*
157952 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
157976 AAAAGAGGCT
1 AAAAGAGGCT
157986 AGGCCTCCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
24 16 0.32
25 34 0.68
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:166418 original size:15 final size:14
Alignment explanation
Indices: 166398--166429 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
166388 ACATTCAATT
166398 AAAAGGAAAAAGAAG
1 AAAAGGAAAAAG-AG
166413 AAAAGGAAAAAGAG
1 AAAAGGAAAAAGAG
166427 AAA
1 AAA
166430 CCTAGATCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (14 bp):
AAAAGGAAAAAGAG
Found at i:169968 original size:54 final size:53
Alignment explanation
Indices: 169827--170072 Score: 193
Period size: 53 Copynumber: 4.7 Consensus size: 53
169817 ATTAGGGTTT
* * * **
169827 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTCATAA-G-TTCATAAGGC
* * *
169882 AAGGAAATCATGTAAGACCATGTCAAGACATGGCGTTCATAAGTTACTATAA-GC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTCATAAGTT-C-ATAAGGC
* * * ** *
169936 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTCATAAGTTCATAAGGC
* **
169989 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTCATAAGTTCAT-AAGGC
* * *
170038 AAGGATACCACGTAAGACCATGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
170073 ATGGTAAGGT
Statistics
Matches: 159, Mismatches: 25, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
49 32 0.20
51 1 0.01
52 12 0.08
53 40 0.25
54 38 0.24
55 36 0.23
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTCATAAGTTCATAAGGC
Found at i:171621 original size:37 final size:37
Alignment explanation
Indices: 171571--171649 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
171561 TTATTACGAA
* * *
171571 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
171608 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
171645 GTCTT
1 GTCTT
171650 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:171878 original size:47 final size:47
Alignment explanation
Indices: 171767--172176 Score: 766
Period size: 47 Copynumber: 8.7 Consensus size: 47
171757 GCCCTTCGGG
**
171767 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCATTATCAC--ATATATAC
*
171817 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
171864 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
171911 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
171958 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
172005 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
172052 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
172099 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
172146 ACTTTCACATTCATCACATCGGCCATTAGGC
1 ACTTTCACATTCATCACATCGGCCATTAGGC
172177 CATACTATCA
Statistics
Matches: 358, Mismatches: 2, Indels: 3
0.99 0.01 0.01
Matches are distributed among these distances:
47 320 0.89
49 34 0.09
50 4 0.01
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
Found at i:173868 original size:106 final size:106
Alignment explanation
Indices: 173655--173871 Score: 409
Period size: 106 Copynumber: 2.0 Consensus size: 106
173645 TGAACACTTT
173655 TTTTTCTTTGTTTCCTTTCTTCCATCCACGGCAAAGGGGGGGGGCATGGATGAGACCATTTTTTT
1 TTTTTCTTTGTTTCCTTTCTTCCATCCACGGCAAAGGGGGGGGGCATGGATGAGACCATTTTTTT
173720 TTTCATCACTCCACCTTTTTGCATTACTTTAATCCTAACCC
66 TTTCATCACTCCACCTTTTTGCATTACTTTAATCCTAACCC
*
173761 TTTTTCTTTGTTTCCTTTCTTCCATTCACGGCAAAGGGGGGGGGCATGGATGAGACCA-TTTTTT
1 TTTTTCTTTGTTTCCTTTCTTCCATCCACGGCAAAGGGGGGGGGCATGGATGAGACCATTTTTTT
173825 TTTCATCACTCCACCTTTTTGCATTACTTTAATCCTAACCCC
66 TTTCATCACTCCACCTTTTTGCATTACTTTAATCCTAA-CCC
173867 TTTTT
1 TTTTT
173872 TTATTCTTTC
Statistics
Matches: 109, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
105 44 0.40
106 65 0.60
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.42
Consensus pattern (106 bp):
TTTTTCTTTGTTTCCTTTCTTCCATCCACGGCAAAGGGGGGGGGCATGGATGAGACCATTTTTTT
TTTCATCACTCCACCTTTTTGCATTACTTTAATCCTAACCC
Found at i:175415 original size:40 final size:40
Alignment explanation
Indices: 175370--175606 Score: 312
Period size: 40 Copynumber: 5.9 Consensus size: 40
175360 CGAATACACG
* * * * *
175370 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** * *
175410 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
175450 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
175490 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
175530 TCATTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
175570 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
175607 TTAGTAACTC
Statistics
Matches: 175, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:175520 original size:80 final size:80
Alignment explanation
Indices: 175385--175685 Score: 320
Period size: 80 Copynumber: 3.8 Consensus size: 80
175375 AGCATGATTA
* * * * * * * ** *
175385 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
175450 TCACTAGCACGAATG
66 TCACTAGCACGAATG
* *
175465 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
175530 TCATTAGCATGAATG
66 TCACTAGCACGAATG
* * *
175545 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
175610 GTAACTCGCACCAATG
66 -TCACTAGCACGAATG
* * ** * *
175626 C-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
175686 CATCATTCGA
Statistics
Matches: 186, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 163 0.88
81 18 0.10
82 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
TCACTAGCACGAATG
Found at i:175588 original size:120 final size:120
Alignment explanation
Indices: 175357--175685 Score: 322
Period size: 120 Copynumber: 2.7 Consensus size: 120
175347 AGGCACGAAG
* * * * * * * * **
175357 GCCCGAATACACGTCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACGA
1 GCCCGGATACA-GTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCATTAGCA-GA
* ** * *
175422 ATGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTA
64 ATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTA
175479 GCCCGGATACA-TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCATTAGCATGAA
1 GCCCGGATACAGTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCATTAGCA-GAA
* * *
175543 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTA
65 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTA
** * * ** * * ** *
175599 GCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACA
1 GCCCGGATACAGTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATA-CATCA-TTAGCAGA
*
175663 AAGC-CTTCGGGACTTAGCCCGGA
64 ATGCTCTTCGGGACTTAGCCCGGA
175686 CATCATTCGA
Statistics
Matches: 173, Mismatches: 31, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
120 138 0.80
121 19 0.11
122 16 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
GCCCGGATACAGTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCATTAGCAGAAT
GCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTA
Found at i:175631 original size:40 final size:40
Alignment explanation
Indices: 175385--175685 Score: 267
Period size: 40 Copynumber: 7.5 Consensus size: 40
175375 AGCATGATTA
* * *
175385 CTCTTCGGGACCTAGCCCGGATATA-ACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATG
* ** *
175425 CTCTTTGGGGTTTAGCACGGATATA-TCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATG
* * *
175465 CTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATG
* * * *
175505 CTCTTCGGAACTTAGCCCGGATACA-TCATTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATG
* * *
175545 CTCTTCGGGACTTAGCCCGGATACA-TCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATG
* * *
175585 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATG
* * *
175626 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAG
1 CTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAATG
175666 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
175686 CATCATTCGA
Statistics
Matches: 224, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.01
40 203 0.91
41 18 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATG
Found at i:176032 original size:29 final size:29
Alignment explanation
Indices: 175993--176071 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
175983 CTTAATAATC
*
175993 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
176023 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
176052 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
176072 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:176114 original size:43 final size:43
Alignment explanation
Indices: 176053--176155 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
176043 TGCATTTCAA
176053 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
176096 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
176139 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
176156 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:192583 original size:37 final size:37
Alignment explanation
Indices: 192533--192607 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
192523 TTGTAGGACA
192533 TCGGAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGG
1 TCGGAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGG
192570 TCGGAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGG
1 TCGGAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGG
192607 T
1 T
192608 GTGTACCGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.32, T:0.20
Consensus pattern (37 bp):
TCGGAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGG
Found at i:201405 original size:80 final size:80
Alignment explanation
Indices: 201272--201529 Score: 439
Period size: 80 Copynumber: 3.2 Consensus size: 80
201262 CGGATGATAA
201272 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
201337 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
*
201352 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
201417 TGCGAGTTACTATAA
66 TGCGAGTTACTATAT
201432 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
* *
201497 AGCAAG-TAGCTATAT
66 TGCGAGTTA-CTATAT
* *
201512 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
201530 TACTTGGTTT
Statistics
Matches: 169, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
79 16 0.09
80 153 0.91
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:201485 original size:120 final size:120
Alignment explanation
Indices: 201272--201529 Score: 448
Period size: 120 Copynumber: 2.2 Consensus size: 120
201262 CGGATGATAA
201272 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
* * *
201337 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
66 TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
201392 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
201457 TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
66 TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
* *
201512 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
201530 TACTTGGTTT
Statistics
Matches: 132, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
119 16 0.12
120 116 0.88
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
Found at i:201510 original size:40 final size:40
Alignment explanation
Indices: 201268--201496 Score: 440
Period size: 40 Copynumber: 5.7 Consensus size: 40
201258 TATTCGGATG
201268 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
201308 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
201348 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
201388 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
201428 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
201468 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
201497 AGCAAGTAGC
Statistics
Matches: 187, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 187 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:205143 original size:21 final size:20
Alignment explanation
Indices: 205111--205152 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
205101 AAATTTTATC
*
205111 TTATAAGAATTTTTGTAAAAA
1 TTATAAGAA-TTTTCTAAAAA
205132 TTATAATG-ATTTTCTAAAAA
1 TTATAA-GAATTTTCTAAAAA
205152 T
1 T
205153 AGAATAGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 11 0.58
21 7 0.37
22 1 0.05
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (20 bp):
TTATAAGAATTTTCTAAAAA
Found at i:206017 original size:28 final size:28
Alignment explanation
Indices: 205949--206027 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
205939 GAATCATTCG
* *
205949 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
205977 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
206005 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
206028 ATTTGATTGC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:211061 original size:57 final size:57
Alignment explanation
Indices: 210965--211322 Score: 599
Period size: 57 Copynumber: 6.2 Consensus size: 57
210955 GATCTCATTT
* * **
210965 CACACACTTAGTGCCCCAACAACCGATCTTGCTTACACAGTGCTCGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
211024 CACATATAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
211081 CACATATAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
211138 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCTCAGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
211195 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
211252 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
211309 CACACACAGTGCCT
1 CACACACAGTGCCT
211323 ATGTTCACTT
Statistics
Matches: 286, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
57 281 0.98
59 5 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:212036 original size:36 final size:36
Alignment explanation
Indices: 211989--212060 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
211979 TGACAATGTG
*
211989 ATAATATCTCTGATGGCCTCCAACCCGATCTAACCT
1 ATAATATCTCTGACGGCCTCCAACCCGATCTAACCT
212025 ATAATATCTCTGACGGCCTCCAACCCGATCTAACCT
1 ATAATATCTCTGACGGCCTCCAACCCGATCTAACCT
212061 GGAAACCCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.35, G:0.11, T:0.26
Consensus pattern (36 bp):
ATAATATCTCTGACGGCCTCCAACCCGATCTAACCT
Found at i:213369 original size:28 final size:28
Alignment explanation
Indices: 213329--213491 Score: 263
Period size: 28 Copynumber: 5.8 Consensus size: 28
213319 GAATCATTCG
* * *
213329 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
* **
213357 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
213385 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
213413 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
213441 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
*
213469 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGTACACTAAGTGCCAT
213492 ATTTGATTGC
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 127 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGTACACTAAGTGCCATTCTCA
Found at i:230209 original size:55 final size:53
Alignment explanation
Indices: 230122--230360 Score: 265
Period size: 55 Copynumber: 4.5 Consensus size: 53
230112 ATTAGGGTTT
*
230122 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
230177 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTGTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
230232 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* *
230285 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* *
230334 AAGGATACCACGTAAGACCATGACAAG
1 AAGGATACCATGTAAGACCATGCCAAG
230361 TTATGGAAAT
Statistics
Matches: 157, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 25 0.16
52 7 0.04
53 42 0.27
54 11 0.07
55 68 0.43
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:230328 original size:108 final size:110
Alignment explanation
Indices: 230129--230329 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
230119 TTTAAGGATA
*
230129 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
230194 CCATGTCAAGACATGGCATTGATAAGTTACTGTAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTGTAAGGCAAAGGTC
* *
230239 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
230301 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
230330 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTGTAAGGCAAAGGTC
Found at i:235254 original size:46 final size:45
Alignment explanation
Indices: 235187--235358 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 45
235177 AACCCGCCCC
*
235187 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATT-GCATCCA
* *
235233 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C-A-TTGCATCCA
* * * * *
235281 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCA-TTGCATCCA
* *
235326 TAGGTGAACTCAGACTCAACTGAACGAGTTCGG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
235359 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 56 0.54
47 27 0.26
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATTGCATCCA
Found at i:235302 original size:93 final size:93
Alignment explanation
Indices: 235192--235362 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
235182 GCCCCTAAGT
* * *
235192 GAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
235257 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
235285 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAGGTGAACTCAGACTCAACTGAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
235350 CGAGTTCGGATGC
66 CGAGTTCGGATGC
235363 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:242844 original size:46 final size:46
Alignment explanation
Indices: 242777--242903 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
242767 AACCCGCCCC
* * * *
242777 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCTA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
242823 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
242869 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC
242904 GCTCAACCAT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:242921 original size:46 final size:45
Alignment explanation
Indices: 242779--242921 Score: 155
Period size: 46 Copynumber: 3.1 Consensus size: 45
242769 CCCGCCCCTA
* * * * *
242779 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATC-TAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-AACCATAT
* * *
242824 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGAC--GCTCAACCATAT
242871 AGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCAACCATACT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCAACCATA-T
242917 AGTGA
1 AGTGA
242922 CATGTCACTT
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
44 8 0.10
46 69 0.85
47 1 0.01
48 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCAACCATAT
Found at i:243259 original size:31 final size:30
Alignment explanation
Indices: 243224--243318 Score: 70
Period size: 31 Copynumber: 3.2 Consensus size: 30
243214 TCCACAATCT
243224 TTTCTTTTCCTCGATCACAACTTGAATCTCG
1 TTTCTTTTCCTCGATCA-AACTTGAATCTCG
* ** ** **
243255 TTTCTCTTGATTTAT-AATACTACAATCT--
1 TTTCTTTTCCTCGATCAA-ACTTGAATCTCG
*
243283 TTTCTTTTCCTCGATCATGACTTGAATCTCG
1 TTTCTTTTCCTCGATCA-AACTTGAATCTCG
243314 TTTCT
1 TTTCT
243319 CTTGATCTAT
Statistics
Matches: 44, Mismatches: 15, Indels: 10
0.64 0.22 0.14
Matches are distributed among these distances:
28 10 0.23
29 10 0.23
30 9 0.20
31 15 0.34
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.47
Consensus pattern (30 bp):
TTTCTTTTCCTCGATCAAACTTGAATCTCG
Found at i:243296 original size:59 final size:59
Alignment explanation
Indices: 243217--243335 Score: 211
Period size: 59 Copynumber: 2.0 Consensus size: 59
243207 AATTTAGTCC
*
243217 ACAATCTTTTCTTTTCCTCGATCACAACTTGAATCTCGTTTCTCTTGATTTATAATACT
1 ACAATCTTTTCTTTTCCTCGATCACAACTTGAATCTCGTTTCTCTTGATCTATAATACT
**
243276 ACAATCTTTTCTTTTCCTCGATCATGACTTGAATCTCGTTTCTCTTGATCTATAATACT
1 ACAATCTTTTCTTTTCCTCGATCACAACTTGAATCTCGTTTCTCTTGATCTATAATACT
243335 A
1 A
243336 AATTAATCTT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.45
Consensus pattern (59 bp):
ACAATCTTTTCTTTTCCTCGATCACAACTTGAATCTCGTTTCTCTTGATCTATAATACT
Found at i:243418 original size:30 final size:30
Alignment explanation
Indices: 243384--243443 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
243374 ATTTAATACG
243384 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
243414 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
243444 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:258690 original size:28 final size:28
Alignment explanation
Indices: 258606--258697 Score: 132
Period size: 29 Copynumber: 3.2 Consensus size: 28
258596 TGTGAGCATA
258606 CATATAAATGTGAATTGGGCCT-GATGGGC
1 CATATAAATGTG-ATTGGGCCTAG-TGGGC
* *
258635 TATATAAATGTGATTTGGGCCTAATGGGC
1 CATATAAATGTGA-TTGGGCCTAGTGGGC
258664 CATATAAATGTGATTGGGCCTAGTGGGC
1 CATATAAATGTGATTGGGCCTAGTGGGC
258692 CATATA
1 CATATA
258698 CAAGTATGTG
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
CATATAAATGTGATTGGGCCTAGTGGGC
Found at i:262423 original size:61 final size:61
Alignment explanation
Indices: 262328--262449 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
262318 GTGTGTATGT
262328 CTCACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGCCGAAAGGGGCCATGCG
1 CTCACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGCCGAAAGGGGCCATGCG
262389 CTCACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGCCGAAAGGGGCCATGCG
1 CTCACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGCCGAAAGGGGCCATGCG
262450 GGCCCAATGG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.20
Consensus pattern (61 bp):
CTCACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGCCGAAAGGGGCCATGCG
Found at i:262676 original size:27 final size:27
Alignment explanation
Indices: 262646--262851 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
262636 TTAGTTTACC
*
262646 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
262673 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
262700 AAATTACCAAAATACCCCTATTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
262727 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
262754 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
262781 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
** * * *
262808 AAATTACTGAACTA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*
262835 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
262852 TCGATTTATA
Statistics
Matches: 154, Mismatches: 23, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
26 4 0.03
27 148 0.96
28 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:262711 original size:54 final size:54
Alignment explanation
Indices: 262637--262869 Score: 245
Period size: 54 Copynumber: 4.3 Consensus size: 54
262627 TAGAATACTT
** * * *
262637 TAGTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
* * *
262691 TGGTTTATAAAATTACCAAAATACCCCTATTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
* *
262745 TAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
* * * ** * * * *
262799 TAATTTGTGAAATTACTGAACTA-CCCTCGACTTGTAAAATTACCAAAGTA-CCC
1 TAGTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCC
* *
262852 TCGATTTATAGAATTACC
1 TAG-TTTATAAAATTACC
262870 GTTTTACCTT
Statistics
Matches: 149, Mismatches: 28, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
53 9 0.06
54 140 0.94
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
TAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
Found at i:262894 original size:54 final size:54
Alignment explanation
Indices: 262820--262949 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
262810 ATTACTGAAC
* ** * *
262820 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTT
* * ******
262874 TACCTTCGATTTACAGAATTATTGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTT
262928 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
262950 TGTTTTACCC
Statistics
Matches: 60, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTT
Found at i:262894 original size:81 final size:81
Alignment explanation
Indices: 262808--262980 Score: 197
Period size: 81 Copynumber: 2.1 Consensus size: 81
262798 CTAATTTGTG
* *
262808 AAATTACTGAACTACCCTCGACTTGTA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCG
1 AAATTACTGAACTACCCTCGA-TT-TACAGAATTACCAAAGTACCCTCGATTTACAAAATTACCG
*
262871 TTTTACCTTCGATTTACA
64 TTTTACCCTCGATTTACA
* * *** *** *
262889 GAATTATTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTGTT
1 AAATTACTGAACTACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAAAATTACCGTT
*
262954 TTACCCTCTATTTACA
66 TTACCCTCGATTTACA
262970 AAATTACTGAA
1 AAATTACTGAA
262981 ATACTCTTGT
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
79 2 0.03
80 3 0.04
81 68 0.93
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (81 bp):
AAATTACTGAACTACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAAAATTACCGTT
TTACCCTCGATTTACA
Found at i:262977 original size:27 final size:27
Alignment explanation
Indices: 262847--262978 Score: 183
Period size: 27 Copynumber: 4.9 Consensus size: 27
262837 ATTACCAAAG
* *
262847 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
262874 TACCTTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
262901 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
262928 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
262955 TACCCTCTATTTACAAAATTACTG
1 TACCCTCGATTTACAGAATTACTG
262979 AAATACTCTT
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:263008 original size:27 final size:27
Alignment explanation
Indices: 262978--263162 Score: 194
Period size: 27 Copynumber: 6.9 Consensus size: 27
262968 CAAAATTACT
* *
262978 GAAATACTCTTGTAGGGTAGAAATGCC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
263005 GAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
263032 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
*
263059 AAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * * * * *
263086 TAAATGCCCCTATAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
263113 GAAATACTCC-TGTAAGGTAGAATTACC
1 GAAATAC-CCTTGTAGGGTAGAAATACC
* *
263140 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCTTGTAGGGTAGAAAT
263163 GGTAGGTGTT
Statistics
Matches: 130, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.04
27 123 0.95
28 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACC
Found at i:263065 original size:81 final size:81
Alignment explanation
Indices: 262971--263162 Score: 233
Period size: 81 Copynumber: 2.4 Consensus size: 81
262961 CTATTTACAA
* * * * *
262971 AATTACTGAAATACTCTTGTAGGGTAGAAATGCCGAAATACCCTTGTAGGGTAAAAATACCGAAA
1 AATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAAAAATACCGAAA
*
263036 TACCCCTGTAGGGTAG
66 TACCCCTGTAAGGTAG
* * * * *
263052 AATTACTAAAATACCCTTGTAGGGTAGAAATACCTAAATGCCCCTATAGGGTAGAATTACTGAAA
1 AATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAAAAATACCGAAA
*
263117 TACTCCTGTAAGGTAG
66 TACCCCTGTAAGGTAG
** * *
263133 AATTACCGAGATACCCTTGTGGGGTA-AAAT
1 AATTACTAAAATACCCTTGTAGGGTAGAAAT
263163 GGTAGGTGTT
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 4 0.04
81 91 0.96
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
AATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAAAAATACCGAAA
TACCCCTGTAAGGTAG
Found at i:263443 original size:27 final size:26
Alignment explanation
Indices: 263399--263450 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
263389 CTCGCTGCAA
*
263399 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
263426 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
263451 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:263488 original size:67 final size:68
Alignment explanation
Indices: 263380--263519 Score: 201
Period size: 67 Copynumber: 2.1 Consensus size: 68
263370 GAGGAAGCGT
* * * *
263380 TCTGGCAACCTCGCTGCAATCTGGTGGCCTCGCCAC-ATATATCTGTTCTGGTGACTTCGTCACA
1 TCTGGCAACCTCGCTGCAATCTGGTGGCCTCACCACAATATATCTGTTCTGGTGACCTAGCCACA
263444 ATA
66 ATA
* * *
263447 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCACCACATATATATCTGTTCTGGTGGCCTAGCCAC
1 TCTGGCAACCTCGCTGCAATCTGGTGGCCTCACCACA-ATATATCTGTTCTGGTGACCTAGCCAC
263512 AATA
65 AATA
263516 TCTG
1 TCTG
263520 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
67 33 0.52
69 31 0.48
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.30
Consensus pattern (68 bp):
TCTGGCAACCTCGCTGCAATCTGGTGGCCTCACCACAATATATCTGTTCTGGTGACCTAGCCACA
ATA
Found at i:263511 original size:29 final size:27
Alignment explanation
Indices: 263465--263546 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
263455 CCTCGCTGCA
*
263465 ATCTGGTGGCTTCACCACATATATATCTGT
1 ATCTGGTGGCCTCACCAC--A-ATATCTGT
263495 -TCTGGTGGCCT-AGCCACAATATCTGT
1 ATCTGGTGGCCTCA-CCACAATATCTGT
* * **
263521 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGGCCTCACCACAATATCTG
263547 GCAGCCTCGC
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
26 8 0.18
27 21 0.48
28 1 0.02
29 14 0.32
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (27 bp):
ATCTGGTGGCCTCACCACAATATCTGT
Found at i:263539 original size:27 final size:26
Alignment explanation
Indices: 263487--263546 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
263477 CACCACATAT
*
263487 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
263513 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
263540 ATATCTG
1 ATATCTG
263547 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:263674 original size:6 final size:6
Alignment explanation
Indices: 263665--263907 Score: 187
Period size: 6 Copynumber: 39.3 Consensus size: 6
263655 TTGCATTCAC
* * *
263665 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
263715 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
263764 ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
263814 ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTTTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
263863 ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
263908 AATGTTTCTT
Statistics
Matches: 192, Mismatches: 22, Indels: 46
0.74 0.08 0.18
Matches are distributed among these distances:
5 14 0.07
6 149 0.78
7 19 0.10
8 10 0.05
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:263696 original size:25 final size:25
Alignment explanation
Indices: 263665--263853 Score: 178
Period size: 25 Copynumber: 7.6 Consensus size: 25
263655 TTGCATTCAC
263665 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* * *
263690 ATACTGATTTTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
*
263715 ATTCTGATTCTGGTTCTGATT--CTG
1 ATTCTGATTCTGATTCTG-TTACCTG
*
263739 ATTCTG-TTACCTGATACTGATT--CTG
1 ATTCTGATT--CTGATTCTG-TTACCTG
*
263764 ATTCTG-TTACCTAATTCTGATT--CTG
1 ATTCTGATT--CTGATTCTG-TTACCTG
*
263789 GTTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* *
263814 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
263839 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
263854 TTGATTTTGA
Statistics
Matches: 141, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
23 4 0.03
24 16 0.11
25 117 0.83
26 4 0.03
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:263734 original size:37 final size:37
Alignment explanation
Indices: 263674--263769 Score: 122
Period size: 37 Copynumber: 2.6 Consensus size: 37
263664 CATTCTGATT
*
263674 CTGATTCTG-TTACCTGATACTGATTTTGATTCTGTTAC
1 CTGATTCTGATT--CTGATTCTGATTTTGATTCTGTTAC
* * *
263712 CTAATTCTGATTCTGGTTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGATTTTGATTCTGTTAC
*
263749 CTGATACTGATTCTGATTCTG
1 CTGATTCTGATTCTGATTCTG
263770 TTACCTAATT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
37 40 0.80
38 8 0.16
39 2 0.04
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGATTTTGATTCTGTTAC
Found at i:263766 original size:62 final size:62
Alignment explanation
Indices: 263666--263893 Score: 402
Period size: 62 Copynumber: 3.7 Consensus size: 62
263656 TGCATTCACA
*
263666 TTCTGATTCTGATTCTGTTACCTGATACTGATTTTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
263728 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
*
263790 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* * * *
263852 TTTTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
263894 ATTCTAGTTC
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 160 1.00
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
Found at i:263796 original size:37 final size:37
Alignment explanation
Indices: 263749--263831 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
263739 ATTCTGTTAC
* *
263749 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
* *
263786 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
263823 CTGATTCTG
1 CTGATTCTG
263832 TTACCTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
Found at i:263852 original size:37 final size:37
Alignment explanation
Indices: 263811--263898 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
263801 ATTCTGTTAC
* *
263811 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
263848 CTGATTTTGATTTTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
263885 CTGATTCTGATTCT
1 CTGATTCTGATTCT
263899 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:264295 original size:58 final size:58
Alignment explanation
Indices: 264231--264346 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
264221 AAGCCGTTGT
*
264231 AATTTTCTGGATTTGAAATTTGGAATTTTATTTATTGTTCTTATAATTGCTAGTATTA
1 AATTTTCTGGATTTCAAATTTGGAATTTTATTTATTGTTCTTATAATTGCTAGTATTA
264289 AATTTTCTGGATTTCAAATTTGGAATTTTATTTATTGTTCTTATAATTGCTAGTATTA
1 AATTTTCTGGATTTCAAATTTGGAATTTTATTTATTGTTCTTATAATTGCTAGTATTA
264347 GAACACAGTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (58 bp):
AATTTTCTGGATTTCAAATTTGGAATTTTATTTATTGTTCTTATAATTGCTAGTATTA
Found at i:266141 original size:27 final size:27
Alignment explanation
Indices: 266119--266285 Score: 253
Period size: 27 Copynumber: 6.2 Consensus size: 27
266109 TTAGTTTACC
266119 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * * *
266146 AAATTACTAAAATACACTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
266173 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
266200 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
266227 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
266254 AAATTACCAAAATATCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
266281 AAATT
1 AAATT
266286 TTTGAACTAC
Statistics
Matches: 125, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:266350 original size:27 final size:27
Alignment explanation
Indices: 266119--266370 Score: 190
Period size: 27 Copynumber: 9.3 Consensus size: 27
266109 TTAGTTTACC
*
266119 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * * *
266146 AAATTACTAAAATACACTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
266173 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
266200 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
266227 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
266254 AAATTACCAAAATATCCCT-AATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTGTA
**** * **
266281 AAATTTTTGAACTACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
266308 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
266335 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
266362 GAATTACCA
1 AAATTACCA
266371 TTTTACCCTC
Statistics
Matches: 185, Mismatches: 35, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
26 4 0.02
27 177 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:266377 original size:27 final size:27
Alignment explanation
Indices: 266347--266505 Score: 201
Period size: 27 Copynumber: 5.9 Consensus size: 27
266337 ATTACCAAAG
*
266347 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
266374 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
266401 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * **
266428 TACCCTCAATTTACAAAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
266455 TACCCTCGATTTATGGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
266482 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTATAGAATTACCG
266506 AAATACCCTT
Statistics
Matches: 113, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:266378 original size:54 final size:54
Alignment explanation
Indices: 266334--266514 Score: 193
Period size: 54 Copynumber: 3.4 Consensus size: 54
266324 CTCGACTTGT
* * *
266334 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTAT
1 AAAATTACCAAATTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAC
* **** *
266388 AGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTAC
1 AAAATTACCAAATTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAC
***** * * *
266442 AAAATTATTGTTTTACCCTCGATTTATGGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAC
266496 AAAATTACCGAAA-TACCCT
1 AAAATTACC-AAATTACCCT
266515 TGTAGGGTAG
Statistics
Matches: 106, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAC
Found at i:266405 original size:81 final size:78
Alignment explanation
Indices: 266320--266514 Score: 210
Period size: 81 Copynumber: 2.4 Consensus size: 78
266310 ATTATTGAAA
* * *
266320 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCAATT
1 TACCCTCGA-TT-TAAAATTACCAAA-TACCCTCAATTTACAAAATTACCATTTTACCCTCAATT
266385 TATAGAATTACTGTTT
63 TATAGAATTACTGTTT
*** *** *
266401 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTA-A-AATTACC-AAATACCCTCAATTTACAAAATTACCATTTTACCCTCAATT
*
266466 TATGGAATTACTGTTT
63 TATAGAATTACTGTTT
266482 TACCCTCGATTTACAAAATTACCGAAATACCCT
1 TACCCTCGATTT--AAAATTACC-AAATACCCT
266515 TGTAGGGTAG
Statistics
Matches: 95, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
79 2 0.02
80 3 0.03
81 88 0.93
82 1 0.01
83 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (78 bp):
TACCCTCGATTTAAAATTACCAAATACCCTCAATTTACAAAATTACCATTTTACCCTCAATTTAT
AGAATTACTGTTT
Found at i:266514 original size:27 final size:27
Alignment explanation
Indices: 266320--266506 Score: 151
Period size: 27 Copynumber: 6.9 Consensus size: 27
266310 ATTATTGAAA
* * * **
266320 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAAAATTACCGATT
*
266347 TACCCTCGATTTATAGAATTACC-ATTT
1 TACCCTCGATTTATAAAATTACCGA-TT
* * * *
266374 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGATT
* * *
266401 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGATT
* * ** *
266428 TACCCTCAATTTACAAAATTATTGTTT
1 TACCCTCGATTTATAAAATTACCGATT
** * *
266455 TACCCTCGATTTATGGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGATT
*
266482 TACCCTCGATTTACAAAATTACCGA
1 TACCCTCGATTTATAAAATTACCGA
266507 AATACCCTTG
Statistics
Matches: 133, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 132 0.99
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGATT
Done.