Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 102 of 276
Found at i:32242479 original size:24 final size:23
Alignment explanation
Indices: 32242395--32242495 Score: 87
Period size: 23 Copynumber: 4.3 Consensus size: 23
32242385 TGATGGACAA
* * *
32242395 TAAGCTCTATTGAGCTGAAATAG
1 TAAGCTCCAATGAGCTGAAACAG
* *
32242418 TAAGCTCCTACGAGCTGAAACAG
1 TAAGCTCCAATGAGCTGAAACAG
* * *
32242441 TAAACT-CATACGAGCTGAGAACAA
1 TAAGCTCCA-ATGAGCTGA-AACAG
*
32242465 TAAGCTCCAATGAGCTAAAAACAG
1 TAAGCTCCAATGAGCT-GAAACAG
32242489 TAAGCTC
1 TAAGCTC
32242496 TTAAGAGCTG
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
22 1 0.02
23 32 0.52
24 26 0.42
25 3 0.05
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (23 bp):
TAAGCTCCAATGAGCTGAAACAG
Found at i:32242835 original size:22 final size:22
Alignment explanation
Indices: 32242807--32242851 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
32242797 GGCTTATCTT
32242807 GATCTATATATTATCAAATTAA
1 GATCTATATATTATCAAATTAA
32242829 GATCTATATATTATCAAATTAA
1 GATCTATATATTATCAAATTAA
32242851 G
1 G
32242852 TACATTCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (22 bp):
GATCTATATATTATCAAATTAA
Found at i:32244369 original size:17 final size:18
Alignment explanation
Indices: 32244341--32244374 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
32244331 TTGGAGAGAA
32244341 GAGGGAATGATGAATGAT
1 GAGGGAATGATGAATGAT
32244359 GAGGG-ATGATGAATGA
1 GAGGGAATGATGAATGA
32244375 GGGAATGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.41, T:0.21
Consensus pattern (18 bp):
GAGGGAATGATGAATGAT
Found at i:32247206 original size:30 final size:31
Alignment explanation
Indices: 32247164--32247224 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 31
32247154 TTTCTTGGCA
32247164 TTTGAACAAGACGAAACTCTACTACACTCAT
1 TTTGAACAAGACGAAACTCTACTACACTCAT
*
32247195 TTTGAAC-AGACGAAACTCTACTATACTCAT
1 TTTGAACAAGACGAAACTCTACTACACTCAT
32247225 CCGGACCAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 22 0.76
31 7 0.24
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (31 bp):
TTTGAACAAGACGAAACTCTACTACACTCAT
Found at i:32251512 original size:27 final size:28
Alignment explanation
Indices: 32251470--32251582 Score: 162
Period size: 27 Copynumber: 4.2 Consensus size: 28
32251460 AGCATGGCTG
* *
32251470 CCAGA-ACAGAT-TTTGTGACAGAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
32251496 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
32251523 CTAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
32251551 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
32251578 CCAGA
1 CCAGA
32251583 ACGCTTCCTC
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
26 5 0.06
27 55 0.71
28 18 0.23
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:32251568 original size:55 final size:54
Alignment explanation
Indices: 32251470--32251583 Score: 169
Period size: 55 Copynumber: 2.1 Consensus size: 54
32251460 AGCATGGCTG
*
32251470 CCAG-AACAGATTTTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATTTTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCA
* *
32251523 CTAGAAACAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGAT-TTTGTGACAGAGCCACCAGATACAGATA-TTGTGGCAGAGCCA
32251578 CCAGAA
1 CCAGAA
32251584 CGCTTCCTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
53 3 0.06
54 13 0.24
55 38 0.70
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (54 bp):
CCAGAAACAGATTTTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCA
Found at i:32251726 original size:26 final size:27
Alignment explanation
Indices: 32251697--32251760 Score: 103
Period size: 26 Copynumber: 2.4 Consensus size: 27
32251687 TTAAATTAAC
*
32251697 CCTAGGGGTATAATGGTAATTTT-GTA
1 CCTAGGGGTATAATGGTAATTTTCATA
32251723 CCTAGGGGTATAATGGTAATTTTCATA
1 CCTAGGGGTATAATGGTAATTTTCATA
*
32251750 CTTAGGGGTAT
1 CCTAGGGGTAT
32251761 TTTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 23 0.66
27 12 0.34
ACGTcount: A:0.27, C:0.09, G:0.27, T:0.38
Consensus pattern (27 bp):
CCTAGGGGTATAATGGTAATTTTCATA
Found at i:32254448 original size:28 final size:28
Alignment explanation
Indices: 32254408--32254464 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
32254398 TGTTTGTGAA
32254408 GCTTGTTTATGAGTCTCGGCAGTATGAT
1 GCTTGTTTATGAGTCTCGGCAGTATGAT
32254436 GCTTGTTTATGAGTCTCGGCAGTATGAT
1 GCTTGTTTATGAGTCTCGGCAGTATGAT
32254464 G
1 G
32254465 TATAATGGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.39
Consensus pattern (28 bp):
GCTTGTTTATGAGTCTCGGCAGTATGAT
Found at i:32259361 original size:42 final size:42
Alignment explanation
Indices: 32259302--32259386 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
32259292 GTTTAATTTG
32259302 ACTATGATAGTATAATTTGGTATAGTTAAATGTGTGAATTAC
1 ACTATGATAGTATAATTTGGTATAGTTAAATGTGTGAATTAC
32259344 ACTATGATAGTATAATTTGGTATAGTTAAATGTGTGAATTAC
1 ACTATGATAGTATAATTTGGTATAGTTAAATGTGTGAATTAC
32259386 A
1 A
32259387 TCTTTGAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (42 bp):
ACTATGATAGTATAATTTGGTATAGTTAAATGTGTGAATTAC
Found at i:32271576 original size:16 final size:15
Alignment explanation
Indices: 32271546--32271579 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32271536 AGATTGAATT
*
32271546 TGAATGATGATTGTA
1 TGAATGATGAATGTA
32271561 TGAATGAATGAATGTA
1 TGAATG-ATGAATGTA
32271577 TGA
1 TGA
32271580 GAAAAGTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.35
Consensus pattern (15 bp):
TGAATGATGAATGTA
Found at i:32275257 original size:23 final size:22
Alignment explanation
Indices: 32275221--32275263 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
32275211 CAGAAAATTT
*
32275221 TGCCAATAAGAATGCAGATAAGA
1 TGCCAATAAAAATGC-GATAAGA
*
32275244 TGCCAGTAAAAATGCGATAA
1 TGCCAATAAAAATGCGATAA
32275264 ATCGTCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.19
Consensus pattern (22 bp):
TGCCAATAAAAATGCGATAAGA
Found at i:32277095 original size:48 final size:48
Alignment explanation
Indices: 32276984--32277223 Score: 160
Period size: 48 Copynumber: 5.0 Consensus size: 48
32276974 ATGTTAGGGT
* * * * *** **
32276984 ATATGTGAGCCAGTTTAAGACCATGTTTGGAACATGGCATCAACATTG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCA
* * * *
32277032 TTATGAGAGCTAGTGTAAGACCATGTCTGGGGCATGGCATTGGCCTCA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCA
* * * * * * **
32277080 ATATGTGAGCCAGTGTAAGACCGTGTTTGGAACATGGCATCGGTATTG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCA
* * ** * *
32277128 TTAT-ATGTGTTAGTGTAAAACCAAGTCTGGGACATGGCATTGGCATCGA
1 ATATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATC-A
* * *
32277177 TGTATGAGAGCCAATGTAAGACCATGT-TCGGGACATGGCATCGGCAT
1 -ATATGAGAGCCAGTGTAAGACCATGTCT-GGGACATGGCATTGGCAT
32277224 TTTACCCTTT
Statistics
Matches: 140, Mismatches: 47, Indels: 8
0.72 0.24 0.04
Matches are distributed among these distances:
48 104 0.74
49 1 0.01
50 34 0.24
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCA
Found at i:32277156 original size:96 final size:98
Alignment explanation
Indices: 32276983--32277224 Score: 310
Period size: 96 Copynumber: 2.5 Consensus size: 98
32276973 GATGTTAGGG
* **
32276983 TATATGTGAGCCAGTTTAAGACCATGTTTGGAACATGGCATCAACATTGTTATGAGAGCTAGTGT
1 TATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGT
* * * *
32277048 AAGACCATGTCTGGGGCATGGCATTGGCCTC-A
66 AAAACCAAGTCTGGGACATGGCATTGGCATCGA
* * * *
32277080 -ATATGTGAGCCAGTGTAAGACCGTGTTTGGAACATGGCATCGGTATTGTTAT-ATGTGTTAGTG
1 TATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA-GAGCTAGTG
32277143 TAAAACCAAGTCTGGGACATGGCATTGGCATCGA
65 TAAAACCAAGTCTGGGACATGGCATTGGCATCGA
* * * * *
32277177 TGTATGAGAGCCAATGTAAGACCATGTTCGGGACATGGCATCGGCATT
1 TATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
32277225 TTACCCTTTT
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
95 1 0.01
96 82 0.66
97 1 0.01
98 40 0.32
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (98 bp):
TATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGT
AAAACCAAGTCTGGGACATGGCATTGGCATCGA
Found at i:32282900 original size:39 final size:40
Alignment explanation
Indices: 32282855--32283039 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
32282845 GCTCCTCGTT
* * *
32282855 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
32282895 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
32282934 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
32282974 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
32283015 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
32283040 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:32282955 original size:40 final size:39
Alignment explanation
Indices: 32282822--32283039 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
32282812 AAATCACGTA
* * **
32282822 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
32282861 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
32282900 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
32282940 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
32282980 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
32283020 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
32283040 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:32309055 original size:43 final size:43
Alignment explanation
Indices: 32309007--32309176 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 43
32308997 ATTACCGAGA
*
32309007 TGTGATTACATGTATGACCATGTCTGAGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
* * *
32309050 TGTGATTA-AGTGTAAGACCATGTCTGGGACATTAGCATCTTTAT
1 TGTGATTACA-TGTAAGACCATGTCTGAGACATTGGCAT-TGTAT
* * * * * * *
32309094 T-CGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
* * * * *
32309135 AAGTGATAACATGTAAGACTATATCTGAGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTA
32309177 CAAGCTTTAT
Statistics
Matches: 98, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.02
42 8 0.08
43 83 0.85
44 5 0.05
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
Found at i:32323217 original size:27 final size:28
Alignment explanation
Indices: 32323177--32323256 Score: 92
Period size: 27 Copynumber: 2.9 Consensus size: 28
32323167 ACTAGCAAAT
* *
32323177 ACTAGCTCGTCAAATAGACTGGCGAAG-
1 ACTAGCTCGCCAAATAGATTGGCGAAGC
* ** *
32323204 TCTAGCTTTCCAAATAGATTAGCG-AGC
1 ACTAGCTCGCCAAATAGATTGGCGAAGC
32323231 ACTAGCTCGCCAAATAGATTGGCGAA
1 ACTAGCTCGCCAAATAGATTGGCGAA
32323257 CATGATTTCA
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
26 2 0.05
27 38 0.93
28 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.23
Consensus pattern (28 bp):
ACTAGCTCGCCAAATAGATTGGCGAAGC
Found at i:32324510 original size:13 final size:13
Alignment explanation
Indices: 32324488--32324527 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
32324478 GGAGTAATCG
*
32324488 CACACAGGCGTGT
1 CACACGGGCGTGT
32324501 CACACGGGCGTGT
1 CACACGGGCGTGT
32324514 CACACGGGCGTGT
1 CACACGGGCGTGT
32324527 C
1 C
32324528 CCTGTCGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:32325847 original size:9 final size:11
Alignment explanation
Indices: 32325825--32325850 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32325815 CTTGACAAAA
32325825 ATAACAATTAT
1 ATAACAATTAT
32325836 ATAACAATTAT
1 ATAACAATTAT
32325847 ATAA
1 ATAA
32325851 TATTGCATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAACAATTAT
Found at i:32329709 original size:20 final size:20
Alignment explanation
Indices: 32329684--32329733 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
32329674 GGGGTTACAT
* *
32329684 GCCCGTGTGGCCTGGGCCAC
1 GCCCGTGTGGCCTGAGACAC
* *
32329704 GCCCGTGTAGCCTGAGACAT
1 GCCCGTGTGGCCTGAGACAC
32329724 GCCCGTGTGG
1 GCCCGTGTGG
32329734 GTAGGCGGTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.10, C:0.34, G:0.38, T:0.18
Consensus pattern (20 bp):
GCCCGTGTGGCCTGAGACAC
Found at i:32331303 original size:43 final size:42
Alignment explanation
Indices: 32331241--32331447 Score: 274
Period size: 43 Copynumber: 4.9 Consensus size: 42
32331231 TATTGTACCA
*
32331241 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * *
32331283 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
* *
32331326 ATGTCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * *
32331368 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
32331411 ATGTCATATCCCAGATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
32331448 GTAACCCTAA
Statistics
Matches: 141, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
42 69 0.49
43 72 0.51
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:32331365 original size:85 final size:85
Alignment explanation
Indices: 32331245--32331446 Score: 404
Period size: 85 Copynumber: 2.4 Consensus size: 85
32331235 GTACCAATGC
32331245 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCTATGGTCTTAC
1 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCTATGGTCTTAC
32331310 ACGAAGTCTCATATCGATGT
66 ACGAAGTCTCATATCGATGT
32331330 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCTATGGTCTTAC
1 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCTATGGTCTTAC
32331395 ACGAAGTCTCATATCGATGT
66 ACGAAGTCTCATATCGATGT
32331415 CATATCCCAGATATGGTCTTACATGTAATCTC
1 CATATCCCAGATATGGTCTTACATGTAATCTC
32331447 AGTAACCCTA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 117 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (85 bp):
CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCTATGGTCTTAC
ACGAAGTCTCATATCGATGT
Found at i:32338056 original size:27 final size:27
Alignment explanation
Indices: 32338036--32338092 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
32338026 AAAATTATAG
32338036 AAATACCATTGGTTTGCAAAATTACCA
1 AAATACCATTGGTTTGCAAAATTACCA
* * * *
32338063 AAATACCCTTGGTTTGTAGATTTACCA
1 AAATACCATTGGTTTGCAAAATTACCA
32338090 AAA
1 AAA
32338093 CACCCTTGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.32
Consensus pattern (27 bp):
AAATACCATTGGTTTGCAAAATTACCA
Found at i:32338383 original size:41 final size:41
Alignment explanation
Indices: 32338338--32338443 Score: 158
Period size: 41 Copynumber: 2.6 Consensus size: 41
32338328 GGAGGAAGAA
*
32338338 ATTGAGGATCGCATGGTTGCTTGACAACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACAACCATGGATCCACCG
* * *
32338379 ATTGATGATCGCATGGTTGCTTGACGATCATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACAACCATGGATCCACCG
* *
32338420 ATTAAGGATCCCATGGTTGCTTGA
1 ATTGAGGATCGCATGGTTGCTTGA
32338444 TGACTGTGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACAACCATGGATCCACCG
Found at i:32338635 original size:22 final size:22
Alignment explanation
Indices: 32338607--32338666 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
32338597 TTATTCTAAT
*
32338607 TATGGCTTTGTGCCAACCT-ACA
1 TATGGCTCTGTGCCAACCTGA-A
* *
32338629 TATGGCTCTGTGCCAGCCTGAT
1 TATGGCTCTGTGCCAACCTGAA
*
32338651 TATGGCTGTGTGCCAA
1 TATGGCTCTGTGCCAA
32338667 ACGTATTTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTGAA
Found at i:32338914 original size:22 final size:22
Alignment explanation
Indices: 32338869--32338915 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
32338859 GTTGCTGTGA
*
32338869 TGTTTACGGCTATGTGCTATCC
1 TGTTTACGGCTATGTGCTACCC
*
32338891 TGTTTACGGCTATGTGCTGCCC
1 TGTTTACGGCTATGTGCTACCC
32338913 TGT
1 TGT
32338916 CTACTGCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.11, C:0.23, G:0.26, T:0.40
Consensus pattern (22 bp):
TGTTTACGGCTATGTGCTACCC
Found at i:32339958 original size:27 final size:23
Alignment explanation
Indices: 32339908--32339954 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32339898 ATTTATTCAG
32339908 TGTAGGTTCTGGAAATCAGATTT
1 TGTAGGTTCTGGAAATCAGATTT
32339931 TGTAGGTTCTGGAAATCAGATTT
1 TGTAGGTTCTGGAAATCAGATTT
32339954 T
1 T
32339955 TTTTAAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (23 bp):
TGTAGGTTCTGGAAATCAGATTT
Found at i:32341679 original size:27 final size:27
Alignment explanation
Indices: 32341630--32341710 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
32341620 AAGCTCATAT
* * *
32341630 CTGTAGGCTAGCATTACTTAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
32341657 CTGTAGGGTAGAATTGCTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
32341684 CTGTAGGGTAGAATTACGGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
32341711 TTGGTTTACA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:32341725 original size:27 final size:26
Alignment explanation
Indices: 32341695--32342097 Score: 257
Period size: 27 Copynumber: 15.0 Consensus size: 26
32341685 TGTAGGGTAG
* **
32341695 AATTACGGAAATACCCTTGGTTTACAA
1 AATTAC-GAAATACCCTTGATTTGTAA
* * **
32341722 AATTACTAAATACCCTTGGTTTACAA
1 AATTACGAAATACCCTTGATTTGTAA
* ** * *
32341748 AATTACCAAAATACCCTCAATTAGCAA
1 AATTA-CGAAATACCCTTGATTTGTAA
* * * *
32341775 AATTACCAAATGCCCGTGGTTTGTAA
1 AATTACGAAATACCCTTGATTTGTAA
* * *
32341801 AATTAACAAAACACCCTTAATTTGTAA
1 AATT-ACGAAATACCCTTGATTTGTAA
* *
32341828 AATTATCGAAATACCCTCGACTTGTAA
1 AATTA-CGAAATACCCTTGATTTGTAA
* *
32341855 AATTACTGAAATACCCTCGATTTATAA
1 AATTAC-GAAATACCCTTGATTTGTAA
* ** *
32341882 AATTACCAAAATACCCTCAATTTGGAA
1 AATTA-CGAAATACCCTTGATTTGTAA
* *
32341909 AATTATCGAAATACCCTTAATTTTTAA
1 AATTA-CGAAATACCCTTGATTTGTAA
* * *
32341936 AATTACCAAAATACCCCTGATTTGGAA
1 AATTA-CGAAATACCCTTGATTTGTAA
*
32341963 AATTACCGAAATACCCTTGATTTGGAA
1 AATTA-CGAAATACCCTTGATTTGTAA
* * * *
32341990 AATTATAGAAATACCCCTAATTTATAA
1 AATTA-CGAAATACCCTTGATTTGTAA
* * * **
32342017 AATTATAGAAGTACCATTGACTTTAAAA
1 AATTA-CGAAATACCCTTGA-TTTGTAA
* * * *
32342045 AATTACAAAAATACCATTGCTTTGCAA
1 AATTAC-GAAATACCCTTGATTTGTAA
*
32342072 AATTACCGAAATACCCTTGGTTTGTA
1 AATTA-CGAAATACCCTTGATTTGTA
32342098 GATTTACCAA
Statistics
Matches: 302, Mismatches: 66, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
26 43 0.14
27 236 0.78
28 23 0.08
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
AATTACGAAATACCCTTGATTTGTAA
Found at i:32341911 original size:81 final size:81
Alignment explanation
Indices: 32341703--32342088 Score: 298
Period size: 81 Copynumber: 4.8 Consensus size: 81
32341693 AGAATTACGG
* * * * ** ** * *
32341703 AAATACCCTTGGTTTACAAAATTA-CTAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCA
1 AAATACCCCTGATTTATAAAATTACCAAAATACCCTTAATTTGGAAAATTATCGAAATACCCTCA
*
32341767 A-TTAGCAAAATTACC-
66 ACTT-GTAAAATTACCA
* * * * * * * *
32341782 AAATGCCCGTGGTTTGTAAAATTAACAAAACACCCTTAATTTGTAAAATTATCGAAATACCCTCG
1 AAATACCCCTGATTTATAAAATTACCAAAATACCCTTAATTTGGAAAATTATCGAAATACCCTCA
**
32341847 ACTTGTAAAATTACTG
66 ACTTGTAAAATTACCA
* *
32341863 AAATA-CCCTCGATTTATAAAATTACCAAAATACCCTCAATTTGGAAAATTATCGAAATACCCTT
1 AAATACCCCT-GATTTATAAAATTACCAAAATACCCTTAATTTGGAAAATTATCGAAATACCCTC
* *
32341927 AATTTTTAAAATTACCA
65 AACTTGTAAAATTACCA
** * * *
32341944 AAATACCCCTGATTTGGAAAATTACCGAAATACCCTTGATTTGGAAAATTATAGAAATACCC-CT
1 AAATACCCCTGATTTATAAAATTACCAAAATACCCTTAATTTGGAAAATTATCGAAATACCCTC-
* * *
32342008 AATTTATAAAATTA-TA
65 AACTTGTAAAATTACCA
* ** * * * ** * *
32342024 GAAGTACCATTGACTTTAAAAAATTACAAAAATACCATTGCTTTGCAAAATTACCGAAATACCCT
1 -AAATACCCCTGA-TTTATAAAATTACCAAAATACCCTTAATTTGGAAAATTATCGAAATACCCT
32342089 TGGTTTGTAG
Statistics
Matches: 248, Mismatches: 50, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
79 20 0.08
80 45 0.18
81 138 0.56
82 45 0.18
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATACCCCTGATTTATAAAATTACCAAAATACCCTTAATTTGGAAAATTATCGAAATACCCTCA
ACTTGTAAAATTACCA
Found at i:32342356 original size:18 final size:18
Alignment explanation
Indices: 32342333--32342370 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
32342323 CATGGGTAGG
*
32342333 GATTATGAAACGGAGGAA
1 GATTATGAAACAGAGGAA
*
32342351 GATTATGAAATAGAGGAA
1 GATTATGAAACAGAGGAA
32342369 GA
1 GA
32342371 AATTGAGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.32, T:0.18
Consensus pattern (18 bp):
GATTATGAAACAGAGGAA
Found at i:32342429 original size:41 final size:41
Alignment explanation
Indices: 32342372--32342494 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
32342362 AGAGGAAGAA
32342372 ATTGAGGATCGTATGGTTGCTTGACGACTGTGGATCCACCG
1 ATTGAGGATCGTATGGTTGCTTGACGACTGTGGATCCACCG
*
32342413 ATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
1 ATTGAGGATCGTATGGTTGCTTGACGACTGTGGATCCACCG
* * * *
32342454 ATTAAGGATCGTATGGTTGCTTGATGACCGTGGATCTACCG
1 ATTGAGGATCGTATGGTTGCTTGACGACTGTGGATCCACCG
32342495 GTGGCTGTTA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (41 bp):
ATTGAGGATCGTATGGTTGCTTGACGACTGTGGATCCACCG
Found at i:32342696 original size:22 final size:22
Alignment explanation
Indices: 32342636--32342700 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32342626 GCCAATTATT
* **
32342636 CTGATTATGGCTTTGCACCAAC
1 CTGATTATGGCTCTGTGCCAAC
32342658 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGGCTCTGTGCCAAC
*
32342680 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
32342701 ATGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:32349048 original size:39 final size:40
Alignment explanation
Indices: 32349003--32349187 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
32348993 GCTCCTCGTT
* * *
32349003 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
32349043 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
32349082 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
32349122 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
32349163 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
32349188 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:32349103 original size:40 final size:39
Alignment explanation
Indices: 32348970--32349187 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
32348960 AAATCACGTA
* * **
32348970 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
32349009 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
32349048 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
32349088 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
32349128 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
32349168 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
32349188 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:32355712 original size:40 final size:40
Alignment explanation
Indices: 32355614--32355876 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
32355604 TCCTCGTTCA
* * * ** *
32355614 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
32355653 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
32355693 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
32355733 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
32355773 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
32355813 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
32355853 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32355877 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:32363219 original size:14 final size:15
Alignment explanation
Indices: 32363194--32363222 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32363184 TCGGTAGACC
32363194 ACACATTCAAAAATA
1 ACACATTCAAAAATA
32363209 ACACA-TCAAAAATA
1 ACACATTCAAAAATA
32363223 CTTTTCAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.21, G:0.00, T:0.17
Consensus pattern (15 bp):
ACACATTCAAAAATA
Found at i:32368115 original size:92 final size:92
Alignment explanation
Indices: 32367920--32368138 Score: 316
Period size: 92 Copynumber: 2.4 Consensus size: 92
32367910 GTAACCCGCC
*
32367920 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTC
1 CATAACTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTC
* * *
32367985 AACTCAATGAGCTCGGGCGTTCGTATC
66 AACTCAATGAGCTCGGGCGCTAGTATA
* * *
32368012 CATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTC
1 CATAACTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTC
32368077 AACTCAATGAGCTCGGG-GCCTAGT-TA
66 AACTCAATGAGCTCGGGCG-CTAGTATA
** *
32368103 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGG
1 CATAACT-GAACTCGGACTCAACTCAACGAGCTCGG
32368139 ATGCCCAAAT
Statistics
Matches: 115, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
91 6 0.05
92 109 0.95
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (92 bp):
CATAACTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTC
AACTCAATGAGCTCGGGCGCTAGTATA
Found at i:32368129 original size:46 final size:46
Alignment explanation
Indices: 32367919--32368093 Score: 332
Period size: 46 Copynumber: 3.8 Consensus size: 46
32367909 TGTAACCCGC
* *
32367919 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTAT
32367965 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTAT
32368011 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTAT
32368057 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGG
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGG
32368094 GCCTAGTTAC
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTAT
Found at i:32370557 original size:15 final size:15
Alignment explanation
Indices: 32370534--32370612 Score: 81
Period size: 15 Copynumber: 5.3 Consensus size: 15
32370524 AAGAAAACCG
32370534 GATAAAGAAATCCAA
1 GATAAAGAAATCCAA
* *
32370549 GATAGAGAAA-CCCA
1 GATAAAGAAATCCAA
32370563 GAATAAAGAAATCC-A
1 G-ATAAAGAAATCCAA
* *
32370578 GAATAAAGAGATCCAG
1 G-ATAAAGAAATCCAA
*
32370594 GATAAAGAAACCCAA
1 GATAAAGAAATCCAA
32370609 GATA
1 GATA
32370613 CGATACTATG
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 46 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.18, T:0.11
Consensus pattern (15 bp):
GATAAAGAAATCCAA
Found at i:32370570 original size:30 final size:30
Alignment explanation
Indices: 32370535--32370612 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
32370525 AGAAAACCGG
*
32370535 ATAAAGAAATCCAAGATAGAGAAACCCAGA
1 ATAAAGAAATCCAAGATAAAGAAACCCAGA
* * *
32370565 ATAAAGAAATCC-AGAATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG-ATAAAGAAACCCAGA
*
32370595 ATAAAGAAACCCAAGATA
1 ATAAAGAAATCCAAGATA
32370613 CGATACTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 37 0.90
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (30 bp):
ATAAAGAAATCCAAGATAAAGAAACCCAGA
Found at i:32373029 original size:28 final size:28
Alignment explanation
Indices: 32372966--32373959 Score: 1909
Period size: 28 Copynumber: 35.5 Consensus size: 28
32372956 ATATTAAGTC
* *
32372966 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAAGCT
* *
32372993 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAGCT
*
32373021 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAGCT
* **
32373049 CGCACACCTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373077 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373105 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373133 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373161 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373189 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373217 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373245 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373273 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373301 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373329 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373357 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373385 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373413 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373441 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373469 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373497 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373525 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373553 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373581 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373609 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373637 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373665 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373693 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373721 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373749 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373777 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373805 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373833 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373861 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373889 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373917 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
32373945 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32373960 GTACAATTTA
Statistics
Matches: 959, Mismatches: 7, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
27 24 0.03
28 935 0.97
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAGCT
Found at i:32382261 original size:46 final size:46
Alignment explanation
Indices: 32382194--32382413 Score: 282
Period size: 46 Copynumber: 4.8 Consensus size: 46
32382184 TGTAACCCGC
* *
32382194 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
32382240 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
32382286 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-GCGTTCGCAT
* *** * * * *
32382331 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
32382378 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
32382414 ATGCCCAAAT
Statistics
Matches: 151, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
45 6 0.04
46 138 0.91
47 7 0.05
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:32382433 original size:46 final size:45
Alignment explanation
Indices: 32382291--32382433 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 45
32382281 CGCATCCATA
* * *
32382291 AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCCA--TATATCCC
* * *
32382338 --TCGAACTCAGACTCAACTCAACGAGTTCGGA---CATTTGCATCCATA
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGGAGCCCATAT--ATCC--C
*
32382383 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCCCATATATCCC
32382429 AGTGA
1 AGTGA
32382434 CATGTCACTC
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 61 0.81
47 1 0.01
48 4 0.05
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCCATATATCCC
Found at i:32388633 original size:13 final size:13
Alignment explanation
Indices: 32388615--32388641 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32388605 CTTTGGAGTA
32388615 GATGCCTAATTAT
1 GATGCCTAATTAT
32388628 GATGCCTAATTAT
1 GATGCCTAATTAT
32388641 G
1 G
32388642 TAAAATTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GATGCCTAATTAT
Found at i:32392399 original size:15 final size:15
Alignment explanation
Indices: 32392379--32392421 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
32392369 TATTAGAAAT
32392379 AAATAGATATTATAA
1 AAATAGATATTATAA
32392394 AAATAGA-A--AT--
1 AAATAGATATTATAA
32392404 AAATAGATATTATAA
1 AAATAGATATTATAA
32392419 AAA
1 AAA
32392422 GAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 1 0.04
12 2 0.09
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGATATTATAA
Found at i:32392400 original size:25 final size:25
Alignment explanation
Indices: 32392372--32392421 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
32392362 AAATATTTAT
32392372 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
32392397 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
32392422 GAAACTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (25 bp):
TAGAAATAAATAGATATTATAAAAA
Found at i:32392731 original size:21 final size:18
Alignment explanation
Indices: 32392688--32392732 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 18
32392678 AAAAGTAGTC
32392688 TTAAAATAAAATAAAAGT
1 TTAAAATAAAATAAAAGT
*
32392706 ATAAAATAATAAATAAAAGTT
1 TTAAAAT-A-AAATAAAAG-T
32392727 TTAAAA
1 TTAAAA
32392733 CATCTTCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 6 0.27
19 1 0.05
20 9 0.41
21 6 0.27
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (18 bp):
TTAAAATAAAATAAAAGT
Found at i:32394845 original size:55 final size:53
Alignment explanation
Indices: 32394758--32395012 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
32394748 ATTAGGGTTT
*
32394758 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGATTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG-TTTCTAAGGC
* * * * * * *
32394813 AAGGAAATCATGTAAGACCATGTCAAGACATGGCAGTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
32394868 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
*
32394921 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * * * *
32394970 AAGGATACCACGTAAGACCATGACAAGTCATGAAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAG
32395013 GTACCCACGT
Statistics
Matches: 166, Mismatches: 26, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
48 2 0.01
49 36 0.22
52 7 0.04
53 39 0.23
54 12 0.07
55 66 0.40
56 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:32394964 original size:108 final size:109
Alignment explanation
Indices: 32394765--32394965 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 109
32394755 TTTAAGGATA
* *
32394765 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGATTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGT-AGAGTTCTAAGGCAAGGAAACCATGTAAGA
*
32394830 CCATGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAAGGTC
65 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
32394875 CCATGTAAGACCATGCCAAGGCATGG-CATTGGT-GAGTTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAGAGTTC-TAAGGCAAGGAAACCATGTAAGA
*
32394938 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
32394966 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 5 0.06
108 47 0.56
109 6 0.07
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAGAGTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:32395225 original size:16 final size:16
Alignment explanation
Indices: 32395204--32395234 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32395194 ATAAATTTGA
32395204 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
32395220 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
32395235 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:32400313 original size:40 final size:40
Alignment explanation
Indices: 32400266--32400410 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
32400256 CTCACACAAG
* * * * *
32400266 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
32400306 GCCTTCGGGACTTAGCCCGGATTTAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
32400346 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
32400387 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
32400411 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:32404846 original size:27 final size:27
Alignment explanation
Indices: 32404807--32404863 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
32404797 ATGAATAGGA
32404807 GAATGTTCCGCTCCACTCATTAAAAAG
1 GAATGTTCCGCTCCACTCATTAAAAAG
* *
32404834 GAATGTTCTGCTCCACTTATTAAAAAG
1 GAATGTTCCGCTCCACTCATTAAAAAG
32404861 GAA
1 GAA
32404864 AATACGTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (27 bp):
GAATGTTCCGCTCCACTCATTAAAAAG
Found at i:32407406 original size:50 final size:49
Alignment explanation
Indices: 32407284--32407459 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 49
32407274 TGAGGTCGCA
* * * *
32407284 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--ACACTGTAGGTCACG
* **
32407335 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATTACA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCACACT-GT-AGGTCACG
* * * *
32407385 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCACACTGTAGGTCACG
32407434 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
32407460 TGCATACCAG
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 31 0.29
50 41 0.38
51 30 0.28
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCACACTGTAGGTCACG
Found at i:32407468 original size:49 final size:48
Alignment explanation
Indices: 32407277--32407470 Score: 176
Period size: 49 Copynumber: 3.9 Consensus size: 48
32407267 TCTATTGTGA
* * *
32407277 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA-CC--AGACTGT
* * * * * *
32407328 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTA-CATG-GTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA--TGCA-TACCA-GACTGT
* * **
32407378 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACTG-T
*
32407427 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
32407471 TAGCTTCGGC
Statistics
Matches: 116, Mismatches: 20, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
47 3 0.03
48 6 0.05
49 39 0.34
50 34 0.29
51 29 0.25
52 1 0.01
53 2 0.02
54 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACTGT
Found at i:32408895 original size:12 final size:12
Alignment explanation
Indices: 32408867--32408900 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
32408857 AAGGGACCTA
32408867 ATTGTAAAATG-
1 ATTGTAAAATGT
32408878 -TTGTAAAATGT
1 ATTGTAAAATGT
32408889 ATTGTAAAATGT
1 ATTGTAAAATGT
32408901 GAATAAATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.48
12 11 0.52
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (12 bp):
ATTGTAAAATGT
Found at i:32408908 original size:22 final size:22
Alignment explanation
Indices: 32408867--32408909 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32408857 AAGGGACCTA
*
32408867 ATTGTAAAATGTTGTAAAATGT
1 ATTGTAAAATGTTGAAAAATGT
32408889 ATTGTAAAATG-TGAATAAATG
1 ATTGTAAAATGTTGAA-AAATG
32408910 GAAAATGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.37
Consensus pattern (22 bp):
ATTGTAAAATGTTGAAAAATGT
Found at i:32410801 original size:13 final size:13
Alignment explanation
Indices: 32410768--32410804 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
32410758 CCATTTTTAG
*
32410768 GCCACACAGGCTA
1 GCCACACGGGCTA
32410781 GCCACACGGGCTA
1 GCCACACGGGCTA
32410794 GCCACACGGGC
1 GCCACACGGGC
32410805 ATATGTGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.24, C:0.41, G:0.30, T:0.05
Consensus pattern (13 bp):
GCCACACGGGCTA
Found at i:32413029 original size:43 final size:43
Alignment explanation
Indices: 32412892--32413054 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
32412882 CATAGAACTC
* * *
32412892 CGATATGTGATTTCGTGTATGACCATGTCTGGGAC-GTTGTCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAG-TGGCAT
* * * * *
32412935 CGAT-TTGAGATTTATGTGTAAGACCATGCCTGGAACA-TCAGCAT
1 CGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCAT
*
32412979 CG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
* * **
32413021 CGATATTTGATTACATGTAAGACCACATCTGGGA
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGA
32413055 TGTTGACATT
Statistics
Matches: 94, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
42 26 0.28
43 43 0.46
44 25 0.27
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
Found at i:32415797 original size:14 final size:14
Alignment explanation
Indices: 32415778--32415810 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
32415768 TCTAAGACAC
32415778 ACATATATGACCAA
1 ACATATATGACCAA
32415792 ACATATATGACCAA
1 ACATATATGACCAA
32415806 ACATA
1 ACATA
32415811 CTTCTCAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.52, C:0.21, G:0.06, T:0.21
Consensus pattern (14 bp):
ACATATATGACCAA
Found at i:32420205 original size:49 final size:47
Alignment explanation
Indices: 32420152--32420367 Score: 172
Period size: 46 Copynumber: 4.6 Consensus size: 47
32420142 AGGTCAATGC
* *
32420152 CATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATG
1 CATGTCCCAGACAGGTCTTACACTAGCTCTCAT-TCTCGGTGTCGATG
* * *
32420200 TCATGTCCCAGACGGGTCTTACACTAGCT-TGTATATCTCGAG-GTCAATG
1 -CATGTCCCAGACAGGTCTTACACTAGCTCT-CAT-TCTCG-GTGTCGATG
* * * **
32420249 CTTGTCCCAAACATGTCTTACACTAGCTCTC-TTCTCAATGTCGATG
1 CATGTCCCAGACAGGTCTTACACTAGCTCTCATTCTCGGTGTCGATG
* * * *** *
32420295 CATGTCCCAGACATGTCTTACATTGGCTCTCAAAAT--GTGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTAGCTCTCATTCTCGGT-GTCGATG
* *
32420341 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACAGGTCTTACACTAGC
32420368 ACACATATCA
Statistics
Matches: 135, Mismatches: 26, Indels: 15
0.77 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 67 0.50
47 2 0.01
48 25 0.19
49 39 0.29
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACAGGTCTTACACTAGCTCTCATTCTCGGTGTCGATG
Found at i:32420221 original size:98 final size:94
Alignment explanation
Indices: 32420055--32420316 Score: 256
Period size: 98 Copynumber: 2.7 Consensus size: 94
32420045 ATGCCAACGC
* ** ** * * * * *
32420055 CATGTCCCAGACATGGTCTTACACTAGCTAGCACATCAAAGTTGATGCCATGTCCTAAATAGGTC
1 CATGTCCCAAACA-GGTCTTACACTAGCTCTCTTATCAATGTCGATG-CATGTCCCAGACAGGTC
32420120 TTACACTAACTT-TCATATATCAAGGTCAATG
64 TTACACTAACTTGT-ATATATCAAGGTCAATG
* * ** *
32420151 CCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGTCATGTCCCAGACGGG
1 -CATGTCCCAAACAGGTCTTACACTAGCTCTC-T-TATCAATGTCGATG-CATGTCCCAGACAGG
* * *
32420216 TCTTACACTAGCTTGTATATCTCGAGGTCAATG
62 TCTTACACTAACTTGTATATATCAAGGTCAATG
* * * *
32420249 CTTGTCCCAAACATGTCTTACACTAGCTCTCTTCTCAATGTCGATGCATGTCCCAGACATGTCTT
1 CATGTCCCAAACAGGTCTTACACTAGCTCTCTTATCAATGTCGATGCATGTCCCAGACAGGTCTT
32420314 ACA
66 ACA
32420317 TTGGCTCTCA
Statistics
Matches: 136, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
94 20 0.15
95 11 0.08
96 16 0.12
97 40 0.29
98 48 0.35
99 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (94 bp):
CATGTCCCAAACAGGTCTTACACTAGCTCTCTTATCAATGTCGATGCATGTCCCAGACAGGTCTT
ACACTAACTTGTATATATCAAGGTCAATG
Found at i:32420311 original size:46 final size:48
Alignment explanation
Indices: 32420053--32420367 Score: 193
Period size: 49 Copynumber: 6.6 Consensus size: 48
32420043 AGATGCCAAC
** * *
32420053 GCCATGTCCCAGACATGGTCTTACACTAGCTAGC-A-CATCAAAGTTGAT
1 GCCATGTCCCAGACAT-GTCTTACACTAGCTCTCTATC-TCAATGTCGAT
* * * * * * * * *
32420101 GCCATGTCCTAAATAGGTCTTACACTAACTTTCATATATCAAGGTCAAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTC-TATCTCAATGTCGAT
* * **
32420150 GCCATGTCCCAGACAGGTCTTACACTGGCTCTC-ATCTATCGGTGTCGAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCTATC--TCAATGTCGAT
* ** * * * * *
32420199 GTCATGTCCCAGACGGGTCTTACACTAGCTTGTATATCTCGAGGTCAAT
1 GCCATGTCCCAGACATGTCTTACACTAGC-TCTCTATCTCAATGTCGAT
* *
32420248 G-CTTGTCCCAAACATGTCTTACACTAGCTCTCT-TCTCAATGTCGAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCTATCTCAATGTCGAT
* * *
32420294 G-CATGTCCCAGACATGTCTTACATTGGCTCTC-A---AAATGTGGCCGAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCTATCTCAATGT---CGAT
*
32420340 G-CATGTCCCAAACATGTCTTACACTAGC
1 GCCATGTCCCAGACATGTCTTACACTAGC
32420368 ACACATATCA
Statistics
Matches: 209, Mismatches: 47, Indels: 24
0.75 0.17 0.09
Matches are distributed among these distances:
43 5 0.02
46 67 0.32
47 19 0.09
48 35 0.17
49 78 0.37
50 2 0.01
51 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (48 bp):
GCCATGTCCCAGACATGTCTTACACTAGCTCTCTATCTCAATGTCGAT
Found at i:32426542 original size:37 final size:37
Alignment explanation
Indices: 32426501--32426576 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
32426491 ATATTGATAT
*
32426501 TAGCAACAACTTGACTTTTTTAACTATCTATTAAAAC
1 TAGCAACAACTTGACATTTTTAACTATCTATTAAAAC
32426538 TAGCAACAACTTGACATTTTTAACTATCTATTAAAAC
1 TAGCAACAACTTGACATTTTTAACTATCTATTAAAAC
32426575 TA
1 TA
32426577 ACCCAAATCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.37
Consensus pattern (37 bp):
TAGCAACAACTTGACATTTTTAACTATCTATTAAAAC
Found at i:32428725 original size:24 final size:25
Alignment explanation
Indices: 32428667--32428725 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 25
32428657 AAGGAAGTGC
32428667 TAAAAG-GGCTTTGCCCCAGTTTAT
1 TAAAAGAGGCTTTGCCCCAGTTTAT
*
32428691 CAAAA-AGGGCTTTGCCCCAG-TTAT
1 TAAAAGA-GGCTTTGCCCCAGTTTAT
32428715 TAAAAGAGGCT
1 TAAAAGAGGCT
32428726 AGGCCTCTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 16 0.53
25 14 0.47
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
TAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:32439014 original size:13 final size:13
Alignment explanation
Indices: 32438996--32439021 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32438986 TTGAACCCAT
32438996 ACCAAAACAATCA
1 ACCAAAACAATCA
32439009 ACCAAAACAATCA
1 ACCAAAACAATCA
32439022 TAAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:32441219 original size:28 final size:28
Alignment explanation
Indices: 32441179--32441236 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
32441169 AGTGCCAAAA
*
32441179 CTAAGGAAGCTTCAATGGCTTTGTTTTT
1 CTAAGGAAGCTTCAATGGCTTTCTTTTT
32441207 CTAAGGAAGCTTCAATGGCTTTCTTTTT
1 CTAAGGAAGCTTCAATGGCTTTCTTTTT
32441235 CT
1 CT
32441237 CATCAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (28 bp):
CTAAGGAAGCTTCAATGGCTTTCTTTTT
Found at i:32444708 original size:68 final size:64
Alignment explanation
Indices: 32444561--32444717 Score: 174
Period size: 68 Copynumber: 2.4 Consensus size: 64
32444551 TTCACCTGGA
* * *
32444561 ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTGCACATAGT
1 ACCACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTGCACATAGC
* * *
32444625 ATCACCCATGCGACCTAGCTACATCATAATGTCTCGTAGCTCTCTTGTAC-ACATGATGTGCAC-
1 ACCACACATGCGACCTAGCTACAT-AT-A--TCCCGTAGCTCTCTTGT-CTACATGATGTGCACA
32444688 TCAGC
61 T-AGC
* *
32444693 ACCATACATGTGACCTAGCTACATA
1 ACCACACATGCGACCTAGCTACATA
32444718 CCATCTGTAT
Statistics
Matches: 78, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
64 22 0.28
65 2 0.03
66 1 0.01
67 2 0.03
68 50 0.64
69 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (64 bp):
ACCACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTGCACATAGC
Found at i:32445216 original size:29 final size:30
Alignment explanation
Indices: 32445182--32445241 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
32445172 TCCTTAACTC
*
32445182 AAACTTTTTCA-AATTACAATTTTGCCCCT
1 AAACTTTTACATAATTACAATTTTGCCCCT
* *
32445211 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTTACATAATTACAATTTTGCCCCT
32445241 A
1 A
32445242 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.42
Consensus pattern (30 bp):
AAACTTTTACATAATTACAATTTTGCCCCT
Found at i:32450609 original size:46 final size:46
Alignment explanation
Indices: 32450466--32450609 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 46
32450456 CCCGCCAATA
* * *
32450466 AGTGAACTCGGACTCAACTCAATGAGCTTGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCA--TACATC-CT
* * * * * *
32450515 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTTGG--ATGCCCATACATCCT
*
32450559 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCATACATCCT
32450605 AGTGA
1 AGTGA
32450610 CATGTCACTT
Statistics
Matches: 73, Mismatches: 16, Indels: 15
0.70 0.15 0.14
Matches are distributed among these distances:
44 8 0.11
46 32 0.44
47 29 0.40
49 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCATACATCCT
Found at i:32457700 original size:15 final size:15
Alignment explanation
Indices: 32457677--32457732 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
32457667 TGATATTTTC
*
32457677 TTCTGGATTTCTTTA
1 TTCTGGATTTCTATA
32457692 TGT-TGGATTTCTATA
1 T-TCTGGATTTCTATA
* *
32457707 TTCTGGATTTATCTA
1 TTCTGGATTTCTATA
*
32457722 TTATGGATTTC
1 TTCTGGATTTC
32457733 CTTATCTTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 1 0.03
15 32 0.94
16 1 0.03
ACGTcount: A:0.18, C:0.11, G:0.16, T:0.55
Consensus pattern (15 bp):
TTCTGGATTTCTATA
Found at i:32459615 original size:32 final size:32
Alignment explanation
Indices: 32459573--32459651 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
32459563 ACAGTCTTAA
* * *
32459573 TTGGGCCTAGCCCATCTCATAATCAATATTAG
1 TTGGGCCTAGCCCATATCAGAACCAATATTAG
*
32459605 TTGGAG-CTAGCCCATATCAGAACCAGTATTAG
1 TTGG-GCCTAGCCCATATCAGAACCAATATTAG
32459637 TTGGGCCTAGCCCAT
1 TTGGGCCTAGCCCAT
32459652 TTCAATATCA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 1 0.02
32 39 0.95
33 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAGAACCAATATTAG
Found at i:32471943 original size:28 final size:28
Alignment explanation
Indices: 32471880--32471977 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
32471870 ATATTAAGTC
*
32471880 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32471907 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32471935 CGCACACTTAGTGCTAAACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32471964 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32471978 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32473804 original size:29 final size:29
Alignment explanation
Indices: 32473770--32473843 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
32473760 TAATCAACCG
*
32473770 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
32473799 CGCACACTTAGTGCCATGCATTTCAATTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
32473828 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32473844 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.07
29 38 0.93
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:32478795 original size:49 final size:49
Alignment explanation
Indices: 32478737--32478858 Score: 147
Period size: 49 Copynumber: 2.5 Consensus size: 49
32478727 CTAGTATAAC
**
32478737 ACCTGTCTGGGACATGGCATCGACAC-CGATAAATGGGAGCCAGTGTAAA
1 ACCTGTCTGGGACATGGCATCGAC-CGCGATAAATGAAAGCCAGTGTAAA
* * * * *
32478786 ACCTATCTGGGACATGGCATCGGCCGCGATATATGAAAGTCAGTGTAAG
1 ACCTGTCTGGGACATGGCATCGACCGCGATAAATGAAAGCCAGTGTAAA
* *
32478835 ACCTGTCTGGGACACGACATCGAC
1 ACCTGTCTGGGACATGGCATCGAC
32478859 TTTAATGTGC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 60 0.98
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.20
Consensus pattern (49 bp):
ACCTGTCTGGGACATGGCATCGACCGCGATAAATGAAAGCCAGTGTAAA
Found at i:32478844 original size:98 final size:95
Alignment explanation
Indices: 32478631--32478858 Score: 230
Period size: 98 Copynumber: 2.4 Consensus size: 95
32478621 GTGGTATGTG
* * * * * *
32478631 AGCTAGTGTAAGACATGTCTAGGACAT-GCATCGACCACATCATGGGTGCCACTGTAAGACATGT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCACATAATGGGAGCCACTGTAAAACATAT
* * *
32478695 TTGGGACATGCATCGGCCTCGGGATATACA
66 CTGGGACATGCATCGGCCGCGAGATATACA
* * * *
32478725 AGCTAGTATAACACCTGTCTGGGACATGGCATCGA-CACCGATAAATGGGAGCCAGTGTAAAACC
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCA-C-AT-AATGGGAGCCACTGTAAAACA
*
32478789 TATCTGGGACATGGCATCGGCCGCGATATATGA-A
63 TATCTGGGACAT-GCATCGGCCGCGAGATAT-ACA
* *
32478823 AG-TCAGTGTAAGACCTGTCTGGGACACGACATCGAC
1 AGCT-AGTGTAAGACCTGTCTGGGACATGGCATCGAC
32478859 TTTAATGTGC
Statistics
Matches: 108, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
94 25 0.23
95 8 0.07
96 2 0.02
97 27 0.25
98 45 0.42
99 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (95 bp):
AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCACATAATGGGAGCCACTGTAAAACATAT
CTGGGACATGCATCGGCCGCGAGATATACA
Found at i:32479662 original size:12 final size:13
Alignment explanation
Indices: 32479647--32479678 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
32479637 ATAACACATT
32479647 TCAAAAC-ATGCA
1 TCAAAACTATGCA
32479659 TCAAAACTATGCA
1 TCAAAACTATGCA
32479672 -CAAAACT
1 TCAAAACT
32479679 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:32480257 original size:43 final size:43
Alignment explanation
Indices: 32480199--32480428 Score: 175
Period size: 43 Copynumber: 5.4 Consensus size: 43
32480189 CAATGCCGAC
*
32480199 GTCCCAGAC-GTGGTCTTACATATAATTCAGTATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACACATAATTCAGTATCGATGCCTCT
** ** * **
32480242 GTCCCAGACAGGGTCTTTTACA-AAAACA-AATACGATGCCGAT
1 GTCCCAGACAGGGTCTTACACATAATTCAGTAT-CGATGCCTCT
* * * *
32480284 GTTCCAGACATGGTCTTACACGTAATTCAGTATCGTTGCCTCT
1 GTCCCAGACAGGGTCTTACACATAATTCAGTATCGATGCCTCT
** * * * * **
32480327 GTCCCAGACAGGGTCTTTTATGA-AAAT-AG-ATACTATGTCGAT
1 GTCCCAGACAGGGTCTTACA-CATAATTCAGTAT-CGATGCCTCT
* * *
32480369 GTCCCAGACATGGTCTTACACGTAATTCAGTATCGTTGCCTCT
1 GTCCCAGACAGGGTCTTACACATAATTCAGTATCGATGCCTCT
32480412 GTCCCAGACAGGGTCTT
1 GTCCCAGACAGGGTCTT
32480429 TTACGAAAAC
Statistics
Matches: 135, Mismatches: 43, Indels: 18
0.69 0.22 0.09
Matches are distributed among these distances:
41 4 0.03
42 56 0.41
43 70 0.52
44 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACACATAATTCAGTATCGATGCCTCT
Found at i:32480334 original size:85 final size:85
Alignment explanation
Indices: 32480182--32480483 Score: 460
Period size: 85 Copynumber: 3.6 Consensus size: 85
32480172 ATATTCACAG
* * * * ** *
32480182 ACAAGTACAATGCCGACGTCCCAGACGTGGTCTTACATATAATTCAGTATCGATGCCTCTGTCCC
1 ACAAATACGATGCCGATGTCCCAGACATGGTCTTACACGTAATTCAGTATCGTTGCCTCTGTCCC
*
32480247 AGACAGGGTCTTTTACAAAA
66 AGACAGGGTCTTTTACGAAA
*
32480267 ACAAATACGATGCCGATGTTCCAGACATGGTCTTACACGTAATTCAGTATCGTTGCCTCTGTCCC
1 ACAAATACGATGCCGATGTCCCAGACATGGTCTTACACGTAATTCAGTATCGTTGCCTCTGTCCC
*
32480332 AGACAGGGTCTTTTATGAAA
66 AGACAGGGTCTTTTACGAAA
* * * *
32480352 ATAGATACTATGTCGATGTCCCAGACATGGTCTTACACGTAATTCAGTATCGTTGCCTCTGTCCC
1 ACAAATACGATGCCGATGTCCCAGACATGGTCTTACACGTAATTCAGTATCGTTGCCTCTGTCCC
32480417 AGACAGGGTCTTTTACGAAA
66 AGACAGGGTCTTTTACGAAA
* *
32480437 ACAGATACGATGTCGATGTCCCAGACATGGTCTTACACGTAATTCAG
1 ACAAATACGATGCCGATGTCCCAGACATGGTCTTACACGTAATTCAG
32480484 ATCAATACCA
Statistics
Matches: 199, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 199 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (85 bp):
ACAAATACGATGCCGATGTCCCAGACATGGTCTTACACGTAATTCAGTATCGTTGCCTCTGTCCC
AGACAGGGTCTTTTACGAAA
Found at i:32480384 original size:42 final size:42
Alignment explanation
Indices: 32480241--32480470 Score: 144
Period size: 42 Copynumber: 5.4 Consensus size: 42
32480231 TCGATGCCTC
* * * * *
32480241 TGTCCCAGACAGGGTCTTTTACAAAAACAAATACGATGCCGA
1 TGTCCCAGACAGGGTCTTTTACGAAAATAGATACTATGTCGA
* * ** * * * **
32480283 TGTTCCAGACATGGTCTTACACGTAATTCAG-TATCGT-TGCCTC
1 TGTCCCAGACAGGGTCTTTTACGAAAAT-AGATA-C-TATGTCGA
*
32480326 TGTCCCAGACAGGGTCTTTTATGAAAATAGATACTATGTCGA
1 TGTCCCAGACAGGGTCTTTTACGAAAATAGATACTATGTCGA
* ** * * * **
32480368 TGTCCCAGACATGGTCTTACACGTAATTCAG-TATCGT-TGCCTC
1 TGTCCCAGACAGGGTCTTTTACGAAAAT-AGATA-C-TATGTCGA
* *
32480411 TGTCCCAGACAGGGTCTTTTACGAAAACAGATACGATGTCGA
1 TGTCCCAGACAGGGTCTTTTACGAAAATAGATACTATGTCGA
*
32480453 TGTCCCAGACATGGTCTT
1 TGTCCCAGACAGGGTCTT
32480471 ACACGTAATT
Statistics
Matches: 136, Mismatches: 42, Indels: 20
0.69 0.21 0.10
Matches are distributed among these distances:
41 1 0.01
42 75 0.55
43 59 0.43
44 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (42 bp):
TGTCCCAGACAGGGTCTTTTACGAAAATAGATACTATGTCGA
Found at i:32484187 original size:24 final size:24
Alignment explanation
Indices: 32484155--32484226 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
32484145 TCACCAAAAA
32484155 AAAACCTCACAATTCACTCACAAG
1 AAAACCTCACAATTCACTCACAAG
* * *
32484179 AAAACCTCACCAA---A--AAAAAA
1 AAAACCTCA-CAATTCACTCACAAG
32484199 AAAACCTCACAATTCACTCACAAG
1 AAAACCTCACAATTCACTCACAAG
32484223 AAAA
1 AAAA
32484227 GAATTCACTC
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
19 3 0.08
20 12 0.33
22 2 0.06
24 16 0.44
25 3 0.08
ACGTcount: A:0.56, C:0.29, G:0.03, T:0.12
Consensus pattern (24 bp):
AAAACCTCACAATTCACTCACAAG
Found at i:32484191 original size:40 final size:41
Alignment explanation
Indices: 32484143--32484226 Score: 134
Period size: 44 Copynumber: 2.0 Consensus size: 41
32484133 AAGAAAATAT
32484143 CCTCACC-AAAAAAAAACCTCACAATTCACTCACAAGAAAA
1 CCTCACCAAAAAAAAAACCTCACAATTCACTCACAAGAAAA
32484183 CCTCACCAAAAAAAAAAAAACCTCACAATTCACTCACAAGAAAA
1 CCTCACC---AAAAAAAAAACCTCACAATTCACTCACAAGAAAA
32484227 GAATTCACTC
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
40 7 0.17
44 33 0.82
ACGTcount: A:0.55, C:0.31, G:0.02, T:0.12
Consensus pattern (41 bp):
CCTCACCAAAAAAAAAACCTCACAATTCACTCACAAGAAAA
Found at i:32484618 original size:14 final size:14
Alignment explanation
Indices: 32484599--32484636 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
32484589 AGACCGTATG
32484599 CAAATTTTTTTTTT
1 CAAATTTTTTTTTT
32484613 CAAA-TTTTTTTTT
1 CAAATTTTTTTTTT
32484626 C-AATTTTTTTT
1 CAAATTTTTTTT
32484637 CGATTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.09
13 17 0.74
14 4 0.17
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (14 bp):
CAAATTTTTTTTTT
Found at i:32484622 original size:12 final size:11
Alignment explanation
Indices: 32484605--32484657 Score: 63
Period size: 11 Copynumber: 4.7 Consensus size: 11
32484595 TATGCAAATT
32484605 TTTTTTTTCAAA
1 TTTTTTTTC-AA
32484617 TTTTTTTTTCAA
1 -TTTTTTTTCAA
*
32484629 TTTTTTTTCGA
1 TTTTTTTTCAA
*
32484640 -TTTTTTTCGA
1 TTTTTTTTCAA
32484650 TTTTTTTT
1 TTTTTTTT
32484658 AATCTACAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
10 10 0.26
11 17 0.45
12 2 0.05
13 9 0.24
ACGTcount: A:0.13, C:0.08, G:0.04, T:0.75
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:32484622 original size:13 final size:13
Alignment explanation
Indices: 32484599--32484636 Score: 60
Period size: 12 Copynumber: 2.9 Consensus size: 13
32484589 AGACCGTATG
32484599 CAAATTTTTTTTTT
1 CAAA-TTTTTTTTT
32484613 CAAATTTTTTTTT
1 CAAATTTTTTTTT
32484626 C-AATTTTTTTT
1 CAAATTTTTTTT
32484637 CGATTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.42
13 10 0.42
14 4 0.17
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (13 bp):
CAAATTTTTTTTT
Found at i:32484643 original size:9 final size:10
Alignment explanation
Indices: 32484619--32484656 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
32484609 TTTTCAAATT
*
32484619 TTTTTTTCAA
1 TTTTTTTCGA
32484629 TTTTTTTTCGA
1 -TTTTTTTCGA
32484640 TTTTTTTCGA
1 TTTTTTTCGA
32484650 TTTTTTT
1 TTTTTTT
32484657 TAATCTACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.11, C:0.08, G:0.05, T:0.76
Consensus pattern (10 bp):
TTTTTTTCGA
Found at i:32484657 original size:11 final size:11
Alignment explanation
Indices: 32484618--32484657 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
32484608 TTTTTCAAAT
*
32484618 TTTTTTTTCAA
1 TTTTTTTTCGA
32484629 TTTTTTTTCGA
1 TTTTTTTTCGA
32484640 -TTTTTTTCGA
1 TTTTTTTTCGA
32484650 TTTTTTTT
1 TTTTTTTT
32484658 AATCTACAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 10 0.37
11 17 0.63
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.78
Consensus pattern (11 bp):
TTTTTTTTCGA
Found at i:32487242 original size:113 final size:113
Alignment explanation
Indices: 32487044--32487271 Score: 447
Period size: 113 Copynumber: 2.0 Consensus size: 113
32487034 TCCGTTCCAC
32487044 CAATGCTAAAATAGCATCTTTAAATCGTTTAGCTCTAGCTCGCGTTATCGGACCAATGGGCAGCT
1 CAATGCTAAAATAGCATCTTTAAATCGTTTAGCTCTAGCTCGCGTTATCGGACCAATGGGCAGCT
*
32487109 TTATAGCTTCTTGTTCGTTCTCCAATTGGTTCGTAGGCAAGCTCACAT
66 TAATAGCTTCTTGTTCGTTCTCCAATTGGTTCGTAGGCAAGCTCACAT
32487157 CAATGCTAAAATAGCATCTTTAAATCGTTTAGCTCTAGCTCGCGTTATCGGACCAATGGGCAGCT
1 CAATGCTAAAATAGCATCTTTAAATCGTTTAGCTCTAGCTCGCGTTATCGGACCAATGGGCAGCT
32487222 TAATAGCTTCTTGTTCGTTCTCCAATTGGTTCGTAGGCAAGCTCACAT
66 TAATAGCTTCTTGTTCGTTCTCCAATTGGTTCGTAGGCAAGCTCACAT
32487270 CA
1 CA
32487272 TTCCCCTCCT
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 114 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (113 bp):
CAATGCTAAAATAGCATCTTTAAATCGTTTAGCTCTAGCTCGCGTTATCGGACCAATGGGCAGCT
TAATAGCTTCTTGTTCGTTCTCCAATTGGTTCGTAGGCAAGCTCACAT
Found at i:32490077 original size:24 final size:25
Alignment explanation
Indices: 32490024--32490077 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
32490014 AACAAATTCT
* *
32490024 TTTTTTCATTTTCATCACTCGTTTC
1 TTTTTTCATTTTAATCACTCGTCTC
32490049 -TTTTTC-TTTTGAATCACTC-TCTC
1 TTTTTTCATTTT-AATCACTCGTCTC
32490072 TTTTTT
1 TTTTTT
32490078 TATCACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTTCATTTTAATCACTCGTCTC
Found at i:32498020 original size:46 final size:45
Alignment explanation
Indices: 32497966--32498189 Score: 186
Period size: 47 Copynumber: 4.8 Consensus size: 45
32497956 ATATTTGGGC
32497966 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-T-GCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACTAG-GA
*** * *
32498010 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GACTAGGA
* *** * *
32498059 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GACTAGGA
* *
32498106 ATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGA-T-GCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACTAG-GA
* * *
32498150 ACACCCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 A-TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32498190 GCGGGTTACA
Statistics
Matches: 154, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.01
44 4 0.03
45 4 0.03
46 62 0.40
47 78 0.51
48 1 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (45 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACTAGGA
Found at i:32498082 original size:47 final size:47
Alignment explanation
Indices: 32498013--32498135 Score: 228
Period size: 47 Copynumber: 2.6 Consensus size: 47
32498003 GATGCGAATG
*
32498013 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
32498060 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
*
32498107 TCCGAGCTCGTTGAGTTGAGTCCAAGTTC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
32498136 ACTTATGGAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:32503546 original size:20 final size:20
Alignment explanation
Indices: 32503523--32503576 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
32503513 AGTTTTTCCC
*
32503523 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
32503543 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
32503563 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
32503577 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:32503558 original size:30 final size:30
Alignment explanation
Indices: 32503523--32503596 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
32503513 AGTTTTTCCC
32503523 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
32503553 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
32503583 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
32503597 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:32503586 original size:20 final size:20
Alignment explanation
Indices: 32503523--32503587 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
32503513 AGTTTTTCCC
* * * *
32503523 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
32503543 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
32503562 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
32503583 AGCTC
1 AGCTC
32503588 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:32507040 original size:45 final size:45
Alignment explanation
Indices: 32506976--32507198 Score: 236
Period size: 45 Copynumber: 5.0 Consensus size: 45
32506966 TAGGATTCCG
* * * * *
32506976 ATATGTGTTTTTC-TATAAGACCATGTCTAAGACGTCGACATTGAT
1 ATATGTG-TTTTCGTGTAAGACCATGTCTAGGACGTTGGCATCGAT
* *
32507021 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCGTCGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTAGGACGTTGGCATCGAT
* **
32507066 ATATATGTTTTCGTGTAAGACCACATC-AGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTA-GGACGTTGGCATCGAT
* * * * *
32507111 ATATCTATTTTCGTGTAAGACCATGTTTGGGACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTAGGACGTTGGCATCGAT
* * *
32507156 ATATGTGGTTAT-GTGTAAGACCATGTCTAGGACATCGGCATCG
1 ATATGT-GTTTTCGTGTAAGACCATGTCTAGGACGTTGGCATCG
32507199 TATTGATTCA
Statistics
Matches: 149, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
44 5 0.03
45 141 0.95
46 3 0.02
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCATGTCTAGGACGTTGGCATCGAT
Found at i:32507268 original size:16 final size:17
Alignment explanation
Indices: 32507237--32507275 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
32507227 ACTATAACGC
32507237 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
**
32507253 CCCAAAAATCTTGAAAT
1 CCCAAAAATCCCGAAAT
32507270 CCCAAA
1 CCCAAA
32507276 CTTTCTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.49, C:0.33, G:0.05, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:32508861 original size:29 final size:29
Alignment explanation
Indices: 32508829--32508915 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
32508819 TTTATAAATA
32508829 TGATTTGGGCTTAATGGGCCATATACAGG
1 TGATTTGGGCTTAATGGGCCATATACAGG
* * **
32508858 TGATTTGGGCCTAATAGGCCATATGA-ATA
1 TGATTTGGGCTTAATGGGCCATAT-ACAGG
*
32508887 TGA-TTGGGCTTAATGGGCCAGATACAGG
1 TGATTTGGGCTTAATGGGCCATATACAGG
32508915 T
1 T
32508916 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
27 1 0.02
28 19 0.40
29 26 0.55
30 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
TGATTTGGGCTTAATGGGCCATATACAGG
Found at i:32520622 original size:192 final size:190
Alignment explanation
Indices: 32520289--32520662 Score: 500
Period size: 192 Copynumber: 2.0 Consensus size: 190
32520279 CAAATAAAGT
* * * *
32520289 GCCAATGCCATGTCCCTGACATGGTCTTACATGAATTCACATATCTTCGTTGATGCCAAGTCCCA
1 GCCAATGCCATGTCCCAGACATGGCCTTACATGAA-TCACATATCATCGCTGATGCCAAGTCCCA
** * * **
32520354 GACATGGTCTTACACTGGCACACATATCATCGCTGATGCCATGTCCCAAACATGGTTTACATTGG
65 GACATAATCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCAAACATGGTTTACACAGG
* *
32520419 CACACATATCATCATCGATGCCTTTATCCCAGACATGGTCTTACACAGGCACACATATCATC
130 CACACATATCATCACCGATGCC-ATATCCCAGACATGGTCTTACACAGGCACACATATCATC
* * * *
32520481 GCCAATGCCATGTCCCAGACATGGCCTTACATAGGCA-CACATATCATCGCTGCTGCTATGTCCC
1 GCCAATGCCATGTCCCAGACATGGCCTTACAT--GAATCACATATCATCGCTGATGCCAAGTCCC
* * *
32520545 AGACATAATCTTACACAGGCACACATATCA-CGCCGATGTCATGTCCCAGACTTGGTCTTACACA
64 AGACATAATCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCAAACATGGT-TTACACA
* *
32520609 GGCACATATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCACA
128 GGCACACATATCATCACCGATGCCATATCCCAGACATGGTCTTACACAGGCACA
32520663 TTCAGCACAA
Statistics
Matches: 158, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
191 50 0.32
192 106 0.67
194 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (190 bp):
GCCAATGCCATGTCCCAGACATGGCCTTACATGAATCACATATCATCGCTGATGCCAAGTCCCAG
ACATAATCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCAAACATGGTTTACACAGGC
ACACATATCATCACCGATGCCATATCCCAGACATGGTCTTACACAGGCACACATATCATC
Found at i:32520663 original size:48 final size:48
Alignment explanation
Indices: 32520293--32520662 Score: 433
Period size: 48 Copynumber: 7.7 Consensus size: 48
32520283 TAAAGTGCCA
* * * * **
32520293 ATGCCATGTCCCTGACATGGTCTT--ACATGAATTCACATATCTTCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCA--CACATATCATCGCCG
* * *
32520341 ATGCCAAGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
* ** **
32520389 ATGCCATGTCCCAAACATGGT-TTACATTGGCACACATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
* * *
32520436 ATGCCTTTATCCCAGACATGGTCTTACACAGGCACACATATCATCGCCA
1 ATGCC-ATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
* * *
32520485 ATGCCATGTCCCAGACATGGCCTTACATAGGCACACATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
* * **
32520533 CTGCTATGTCCCAGACATAATCTTACACAGGCACACATATCA-CGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
* * * *
32520580 ATGTCATGTCCCAGACTTGGTCTTACACAGGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
32520628 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
32520663 TTCAGCACAA
Statistics
Matches: 273, Mismatches: 44, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
47 66 0.24
48 177 0.65
49 26 0.10
50 4 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
Found at i:32523725 original size:30 final size:30
Alignment explanation
Indices: 32523679--32523739 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32523669 TTTCCGAGCC
32523679 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
32523709 TAGGGGCAAAATTGTAATTGTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
32523739 T
1 T
32523740 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:32524324 original size:68 final size:66
Alignment explanation
Indices: 32524249--32524456 Score: 187
Period size: 67 Copynumber: 3.2 Consensus size: 66
32524239 CATCATGTGT
*
32524249 ACAAGAGAGCTACGAGACATTATGATATAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAGA-A-TATGATATAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
32524314 TAG
64 TAG
* * * * * * *
32524317 ACAAGAGAGCTACGGGATATATG-TA-A-CTAGGTCGCATGCGTGGTTCCAGGTGAAGGACAACA
1 ACAAGAGAGCTACGAGA-ATATGATATAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCA
32524379 TGTAG
62 TGTAG
* * * * *
32524384 ACAAGAGAGCTACGAG-ATA-GA-CTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-
1 ACAAGAGAGCTACGAGAATATGATATAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTA
32524445 G
66 G
32524446 TACAAGAGAGC
1 -ACAAGAGAGC
32524457 CAAAATTATG
Statistics
Matches: 112, Mismatches: 21, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 20 0.18
65 4 0.04
66 22 0.20
67 30 0.27
68 17 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGAGAATATGATATAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTA
G
Found at i:32525910 original size:27 final size:26
Alignment explanation
Indices: 32525870--32525973 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 26
32525860 AGGAAGCGTC
* *
32525870 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
32525897 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
32525924 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
32525952 CTGGTGACTCTGTCACATTATC
1 CTGGTGGCTCTGCCACATTATC
32525974 CGTTCTGGCA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 2 0.03
27 48 0.73
28 16 0.24
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:32525979 original size:54 final size:54
Alignment explanation
Indices: 32525870--32525981 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
32525860 AGGAAGCGTC
* * *
32525870 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCCGTT
* * * *
32525924 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCCGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCCGTT
32525978 CTGG
1 CTGG
32525982 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCCGTT
Found at i:32526983 original size:30 final size:30
Alignment explanation
Indices: 32526939--32527027 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
32526929 CAAAGATAAC
*
32526939 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
32526968 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
32526998 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
32527028 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:32526987 original size:15 final size:14
Alignment explanation
Indices: 32526939--32527021 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
32526929 CAAAGATAAC
*
32526939 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
32526953 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
32526968 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
32526983 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
32526998 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
32527013 AAGAAACCC
1 AAGAAACCC
32527022 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:32527027 original size:15 final size:15
Alignment explanation
Indices: 32526950--32527027 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
32526940 AGAAAACCGA
32526950 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
32526965 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
32526979 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
32526994 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
32527010 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32527025 ATA
1 ATA
32527028 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32530020 original size:47 final size:47
Alignment explanation
Indices: 32529951--32530074 Score: 239
Period size: 47 Copynumber: 2.6 Consensus size: 47
32529941 CGCCCATAAG
32529951 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
32529998 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
*
32530045 CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGCTCGGA
32530075 CGTTCACATC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (47 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:32530139 original size:46 final size:45
Alignment explanation
Indices: 32529951--32530123 Score: 206
Period size: 47 Copynumber: 3.7 Consensus size: 45
32529941 CGCCCATAAG
32529951 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTA--TACATCTCT
32529998 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTA--TACATCTCT
* * * ***
32530045 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCAC-ATCCATAAGT
1 CGAACTCGGACTCAACTCAACGAGCTCGGA--TGC-CTATACATCTCT
*
32530092 -GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGC
32530124 TCAACCATCC
Statistics
Matches: 116, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
44 2 0.02
46 29 0.25
47 81 0.70
49 3 0.03
50 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (45 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTATACATCTCT
Found at i:32531660 original size:42 final size:40
Alignment explanation
Indices: 32531509--32531661 Score: 139
Period size: 42 Copynumber: 3.7 Consensus size: 40
32531499 ATGAGTTACG
* * *
32531509 TGTAAGACCATACCTGGGATATGACATCGTTATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA--TCA
* *
32531551 TGTAAGACCATGTCTAGGG-CATGGCATCGATATGAGAATCA
1 TGTAAGACCATATCT-GGGATATGGCATCGATATGAG-ATCA
* *
32531592 TGTAA-AGCCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGA-CCATATCTGGGATA-TGGCATCGATATGAGAT--CA
* *
32531635 TGTAAGACCACATCTTGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
32531662 TGGTATGATT
Statistics
Matches: 91, Mismatches: 12, Indels: 16
0.76 0.10 0.13
Matches are distributed among these distances:
40 4 0.04
41 17 0.19
42 48 0.53
43 21 0.23
44 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (40 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCA
Found at i:32533684 original size:68 final size:69
Alignment explanation
Indices: 32533564--32533694 Score: 192
Period size: 68 Copynumber: 1.9 Consensus size: 69
32533554 AAAAATTAAT
* * * * * *
32533564 CACTTTAATATTAAATTAATATAATACTTATCGAGATAAATATTATATTAAATTTAATATTAAGA
1 CACTTTAACATTAAATTAACAAAATACTTATCAAGATAAATATTAAACTAAATTTAATATTAAGA
32533629 TAAC
66 TAAC
*
32533633 CACTTTAACATTAAATTAACAAAATA-TTATCAAGATAAGTATTAAACTAAATTTAATATTAA
1 CACTTTAACATTAAATTAACAAAATACTTATCAAGATAAATATTAAACTAAATTTAATATTAA
32533695 ATCTATTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
68 32 0.58
69 23 0.42
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (69 bp):
CACTTTAACATTAAATTAACAAAATACTTATCAAGATAAATATTAAACTAAATTTAATATTAAGA
TAAC
Found at i:32536695 original size:21 final size:22
Alignment explanation
Indices: 32536669--32536719 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
32536659 CCTGTAGCAT
**
32536669 GGGCGTGTCCC-GGGGTCACAC
1 GGGCGTGTCCCTGGGACCACAC
*
32536690 GGGCGTGTCCCTTGGACCACAC
1 GGGCGTGTCCCTGGGACCACAC
32536712 GGGCGTGT
1 GGGCGTGT
32536720 AAACCCTGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.10, C:0.31, G:0.41, T:0.18
Consensus pattern (22 bp):
GGGCGTGTCCCTGGGACCACAC
Found at i:32538599 original size:79 final size:82
Alignment explanation
Indices: 32538488--32538672 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
32538478 GCTACTCGTT
* *
32538488 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32538551 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* ***
32538568 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTTCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
32538631 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
32538648 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32538673 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:32538605 original size:39 final size:40
Alignment explanation
Indices: 32538488--32538672 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
32538478 GCTACTCGTT
*
32538488 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
32538528 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
32538568 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * *
32538607 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
32538648 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32538673 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32546575 original size:39 final size:40
Alignment explanation
Indices: 32546458--32546642 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
32546448 GCTACTCGTT
* *
32546458 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
32546498 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
32546538 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * *
32546577 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
32546618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32546643 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 76 0.61
41 13 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32546580 original size:79 final size:82
Alignment explanation
Indices: 32546458--32546642 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
32546448 GCTACTCGTT
* * *
32546458 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGGACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32546521 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* ***
32546538 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTTCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
32546601 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
32546618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32546643 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:32554461 original size:40 final size:39
Alignment explanation
Indices: 32554424--32554515 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
32554414 GCTACTCGTT
*
32554424 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
32554464 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
32554503 CAAATGCCTTCGG
1 CAAATGCCTTCGG
32554516 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:32554495 original size:39 final size:40
Alignment explanation
Indices: 32554405--32554568 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
32554395 CGGAATTTAA
** *
32554405 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
32554445 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32554484 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32554524 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32554564 CCGGA
1 CCGGA
32554569 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32556211 original size:100 final size:100
Alignment explanation
Indices: 32556038--32556237 Score: 400
Period size: 100 Copynumber: 2.0 Consensus size: 100
32556028 TTCTGAATAT
32556038 ATGATGTCATTGTTAAGGAAGAAGTTATTCATGAGTAATCGACTTATCCAGATATGATATCTACA
1 ATGATGTCATTGTTAAGGAAGAAGTTATTCATGAGTAATCGACTTATCCAGATATGATATCTACA
32556103 GAACGAATTAGCCAAAAATACTTCTGAATTGACTC
66 GAACGAATTAGCCAAAAATACTTCTGAATTGACTC
32556138 ATGATGTCATTGTTAAGGAAGAAGTTATTCATGAGTAATCGACTTATCCAGATATGATATCTACA
1 ATGATGTCATTGTTAAGGAAGAAGTTATTCATGAGTAATCGACTTATCCAGATATGATATCTACA
32556203 GAACGAATTAGCCAAAAATACTTCTGAATTGACTC
66 GAACGAATTAGCCAAAAATACTTCTGAATTGACTC
32556238 TTTCAGTGGA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (100 bp):
ATGATGTCATTGTTAAGGAAGAAGTTATTCATGAGTAATCGACTTATCCAGATATGATATCTACA
GAACGAATTAGCCAAAAATACTTCTGAATTGACTC
Found at i:32565537 original size:33 final size:32
Alignment explanation
Indices: 32565488--32565551 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
32565478 CTCGCTGCAA
* *
32565488 TCTGGTGGCTTCGCCACACATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
*
32565521 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
32565552 GTGACTTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:32574498 original size:27 final size:27
Alignment explanation
Indices: 32574443--32574500 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
32574433 CAATGACAGT
* *
32574443 AATATAATCGACACACAGCCATTGGTA
1 AATATAATCGACACACAGCCATCGATA
* * *
32574470 AATATGATCGACACAGAGTCATCGATA
1 AATATAATCGACACACAGCCATCGATA
32574497 AATA
1 AATA
32574501 AGATAGGCCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (27 bp):
AATATAATCGACACACAGCCATCGATA
Done.