Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 103 of 276
Found at i:32576565 original size:23 final size:23
Alignment explanation
Indices: 32576538--32576590 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
32576528 CTTTCACATC
*
32576538 CATCACGTTGGCCACTCGGCCCT
1 CATCACATTGGCCACTCGGCCCT
*
32576561 CATCACATTGGCCATTCGG-CCT
1 CATCACATTGGCCACTCGGCCCT
*
32576583 TATCACAT
1 CATCACAT
32576591 ATATACACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.19, C:0.38, G:0.17, T:0.26
Consensus pattern (23 bp):
CATCACATTGGCCACTCGGCCCT
Found at i:32576590 original size:22 final size:22
Alignment explanation
Indices: 32576539--32576684 Score: 80
Period size: 22 Copynumber: 6.3 Consensus size: 22
32576529 TTTCACATCC
* * *
32576539 ATCACGTTGGCCACTCGGCCCTC
1 ATCACATTGGCCATTCGG-CCTT
32576562 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
32576584 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
32576608 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
** * * *
32576631 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
32576655 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32576678 ATCACAT
1 ATCACAT
32576685 ATATACACTT
Statistics
Matches: 90, Mismatches: 23, Indels: 21
0.67 0.17 0.16
Matches are distributed among these distances:
22 32 0.36
23 26 0.29
24 10 0.11
25 22 0.24
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32576614 original size:47 final size:47
Alignment explanation
Indices: 32576560--32576938 Score: 659
Period size: 47 Copynumber: 8.0 Consensus size: 47
32576550 CACTCGGCCC
*
32576560 TCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACAT
1 TCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACAT
*
32576607 TCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACAT
1 TCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACAT
*
32576654 TCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACAT
1 TCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACAT
*
32576701 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 TCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACAT
* *
32576748 TCATCACATCGGTCATTAGGCCTTATCACATATATACACTTTCACAT
1 TCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACAT
32576795 TCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
1 TCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACAT
*
32576844 TCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACAT
1 TCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACAT
* *
32576891 TCATCACATCGGCCATTAGGCCTTATCACATATAGACACTTTCACAT
1 TCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACAT
32576938 T
1 T
32576939 TATTCAAATA
Statistics
Matches: 321, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 275 0.86
49 46 0.14
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
TCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACAT
Found at i:32581115 original size:25 final size:25
Alignment explanation
Indices: 32581086--32581135 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
32581076 AGTGTCTCAG
* *
32581086 TACTACCTATAATAGTTTCAGAATA
1 TACTACCAAAAATAGTTTCAGAATA
*
32581111 TACTATCAAAAATAGTTTCAGAATA
1 TACTACCAAAAATAGTTTCAGAATA
32581136 ATTCACAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (25 bp):
TACTACCAAAAATAGTTTCAGAATA
Found at i:32582250 original size:18 final size:19
Alignment explanation
Indices: 32582213--32582250 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
32582203 AATGCAATAT
*
32582213 ACATATATGACATGCTAAA
1 ACATATATGACATGCAAAA
*
32582232 ACATA-ATGTCATGCAAAA
1 ACATATATGACATGCAAAA
32582250 A
1 A
32582251 ATCAGGGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.50, C:0.16, G:0.11, T:0.24
Consensus pattern (19 bp):
ACATATATGACATGCAAAA
Found at i:32585392 original size:5 final size:5
Alignment explanation
Indices: 32585382--32585419 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
32585372 AAATCAGCTG
32585382 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTC
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTC
32585420 GTATGACTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTCTT
Found at i:32586837 original size:36 final size:36
Alignment explanation
Indices: 32586793--32586864 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
32586783 CTTTGAGATA
*
32586793 ATATATATCATACCAACACATCATCTGTATAAATAT
1 ATATATATCATACCAACACATCATCTGCATAAATAT
*
32586829 ATATATATCATACCAACACATCATGTGCATAAATAT
1 ATATATATCATACCAACACATCATCTGCATAAATAT
32586865 GTGCAAGTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.32
Consensus pattern (36 bp):
ATATATATCATACCAACACATCATCTGCATAAATAT
Found at i:32587635 original size:43 final size:43
Alignment explanation
Indices: 32587581--32587706 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 43
32587571 TATCATACAG
** * *
32587581 TGCCAACGTCCCAGGTGTGGTCTTACATGTAACCTCATATCGA
1 TGCCAACGTCCCAGAAGTGGTCTTACATGTAAACACATATCGA
* *
32587624 TGCC-ACTGTCCCAAACAG-GGTCTTACTTGTAAACACATATCGA
1 TGCCAAC-GTCCCAGA-AGTGGTCTTACATGTAAACACATATCGA
* * *
32587667 TGCCAACGTCCCAGACGTGGTCTTACAGGTAATCACATAT
1 TGCCAACGTCCCAGAAGTGGTCTTACATGTAAACACATAT
32587707 ACATCCATGT
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
42 3 0.04
43 62 0.91
44 3 0.04
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (43 bp):
TGCCAACGTCCCAGAAGTGGTCTTACATGTAAACACATATCGA
Found at i:32590033 original size:27 final size:27
Alignment explanation
Indices: 32590003--32590079 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
32589993 GGCATAATCA
* *
32590003 TCATTCTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
32590030 TCATTTTACCCTACAAAGGCATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
32590057 TCATTTTA-CACTACAAGGGTATT
1 TCATTTTACCA-TACAAGGGTATT
32590080 TTAGTAATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.02
27 40 0.98
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:32595135 original size:27 final size:25
Alignment explanation
Indices: 32595103--32595214 Score: 89
Period size: 27 Copynumber: 4.2 Consensus size: 25
32595093 AGGAAGCGTC
32595103 CTGGTGGTTATGCCACAATTATCTGAT
1 CTGGTGGTT-TGCCAC-ATTATCTGAT
*
32595130 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGG-TTTGCCACAT-TATCTGAT
* *
32595157 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGG-TTTGCCAC-ATTATCT-GAT
* * * *
32595185 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTG-GTTTGCCACATTATCTGAT
32595211 CTGG
1 CTGG
32595215 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.10
27 47 0.65
28 18 0.25
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (25 bp):
CTGGTGGTTTGCCACATTATCTGAT
Found at i:32595207 original size:54 final size:54
Alignment explanation
Indices: 32595103--32595214 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
32595093 AGGAAGCGTC
* * *
32595103 CTGGTGGTTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
32595157 CTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTT
32595211 CTGG
1 CTGG
32595215 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:32602195 original size:85 final size:85
Alignment explanation
Indices: 32602052--32602400 Score: 680
Period size: 85 Copynumber: 4.1 Consensus size: 85
32602042 GGCCGGCCAT
*
32602052 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCACAAACATGTTGGGGTAGTGCATTAT
32602117 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
32602137 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCACAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCACAAACATGTTGGGGTAGTGCATTAT
32602202 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
32602222 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCACAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCACAAACATGTTGGGGTAGTGCATTAT
32602287 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
32602307 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCACAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCACAAACATGTTGGGGTAGTGCATTAT
32602372 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
32602392 GGGCATGGG
1 GAGCATGGG
32602401 CAATAAAATA
Statistics
Matches: 262, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 262 1.00
ACGTcount: A:0.38, C:0.09, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCACAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:32603719 original size:47 final size:47
Alignment explanation
Indices: 32603665--32605003 Score: 2070
Period size: 47 Copynumber: 28.4 Consensus size: 47
32603655 TATTTGAATA
* * *
32603665 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
32603712 AATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
32603761 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
32603808 AATGTGAA-AGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
32603857 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * * * *
32603904 AATGTGAA-AGTGTATATATGTGACAAGGCCTAATAGCCGATGTGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
32603951 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
32603998 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604047 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604094 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604141 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604188 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604235 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604282 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604329 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604376 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604423 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604470 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604517 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604564 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604611 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604658 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604705 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604752 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604799 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604846 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
** * * * *
32604893 AATGTGAACATGCATATATGAGATAAAGCCGAATGACCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
32604940 AATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
32604989 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
32605004 ATATNNNNNN
Statistics
Matches: 1256, Mismatches: 26, Indels: 22
0.96 0.02 0.02
Matches are distributed among these distances:
45 4 0.00
46 1 0.00
47 1079 0.86
49 171 0.14
50 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:32610679 original size:22 final size:22
Alignment explanation
Indices: 32610652--32610726 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
32610642 CACGTGTATG
32610652 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
32610674 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
32610699 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
32610721 TGTGAT
1 TGTGAT
32610727 GGATGTGGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:32610754 original size:47 final size:47
Alignment explanation
Indices: 32609804--32610733 Score: 1711
Period size: 47 Copynumber: 19.7 Consensus size: 47
32609794 AGTATATATA
* * * * ** *
32609804 TGTGATAGGGCCTAGTGGCCAATGTGATGAATGTGAAAGTATATATATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA-CACGTGTATG
* *
32609853 CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32609900 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32609947 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32609994 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610041 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610088 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610135 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610182 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610229 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610276 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610323 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610370 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610417 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610464 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610511 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610558 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
32610605 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
*
32610652 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A-GTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTG--TATG
*
32610699 TGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
32610734 GAAGTGTATA
Statistics
Matches: 868, Mismatches: 11, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
45 3 0.00
46 1 0.00
47 831 0.96
48 2 0.00
49 31 0.04
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGTGTATG
Found at i:32613676 original size:27 final size:26
Alignment explanation
Indices: 32613571--32613683 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
32613561 AGGAAGCGTC
* * **
32613571 CTGGTGGTTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
32613598 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
32613625 CTGGTGGCTCTGCCGCGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
32613653 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
32613679 CTGGT
1 CTGGT
32613684 CGCCATGCTG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.67
28 16 0.22
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:32614320 original size:40 final size:40
Alignment explanation
Indices: 32614264--32614344 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
32614254 AAGCTTCTGC
32614264 AATGAAAATATTTTCCAAAATTAATCACTCTTT-CTAAAA
1 AATGAAAATATTTTCCAAAATTAATCACTCTTTCCTAAAA
32614303 ANATGAAAATATTTTCCAAAATTAATCACTCTTTCCTAAAA
1 A-ATGAAAATATTTTCCAAAATTAATCACTCTTTCCTAAAA
32614344 A
1 A
32614345 GGACTTAATC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 1 0.03
40 32 0.80
41 7 0.17
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.35
Consensus pattern (40 bp):
AATGAAAATATTTTCCAAAATTAATCACTCTTTCCTAAAA
Found at i:32622972 original size:15 final size:15
Alignment explanation
Indices: 32622952--32623006 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
32622942 ACTCTCCTCA
*
32622952 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
32622967 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
32622982 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
32622996 TTCTTTT-TCTC
1 TTCTTTTCTCTC
32623007 GATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:32641699 original size:34 final size:34
Alignment explanation
Indices: 32641626--32641691 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
32641616 TGCATATTTG
*
32641626 TACTGCTACTGTTACTGACATGGGCTAAGGCCAA
1 TACTGATACTGTTACTGACATGGGCTAAGGCCAA
*
32641660 TACTGATACTGTTACTGTA-TTGGGCTAAGGCC
1 TACTGATACTGTTACTG-ACATGGGCTAAGGCC
32641692 CTAACTGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (34 bp):
TACTGATACTGTTACTGACATGGGCTAAGGCCAA
Found at i:32646327 original size:12 final size:12
Alignment explanation
Indices: 32646310--32646334 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32646300 TAAGTGGTTT
32646310 TGATGACTTTTC
1 TGATGACTTTTC
32646322 TGATGACTTTTC
1 TGATGACTTTTC
32646334 T
1 T
32646335 TGATAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (12 bp):
TGATGACTTTTC
Found at i:32647120 original size:47 final size:45
Alignment explanation
Indices: 32647055--32647310 Score: 244
Period size: 46 Copynumber: 5.5 Consensus size: 45
32647045 TTTGTGTGCT
32647055 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGAGGC
*
32647101 AGTGTAAGACCATGTCTGGGA-ATGACATCAG--CATTGA-GACGAGAGC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCCATT-ATGA-GAG-GC
32647147 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGGC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGAGGC
*
32647194 AGTGTAAGACCATGTCTGGGA-ATGACATCAG--CATTGA-GACGAGAGC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCCATT-ATGA-GAG-GC
* * *
32647240 TAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GATGTA-AGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTATG-AGAGGC
32647287 AGTGTAAGACATGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
32647311 TATCAGCTAT
Statistics
Matches: 179, Mismatches: 7, Indels: 48
0.76 0.03 0.21
Matches are distributed among these distances:
44 12 0.07
45 8 0.04
46 83 0.46
47 59 0.33
48 7 0.04
49 8 0.04
50 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGAGGC
Found at i:32647191 original size:46 final size:45
Alignment explanation
Indices: 32647052--32647459 Score: 234
Period size: 46 Copynumber: 8.7 Consensus size: 45
32647042 TTTTTTGTGT
32647052 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGA
* *
32647098 GGC-AGTGTAAGACCATGTCTGGGA-ATGACATCAG--CATTGAGACGAGA
1 -GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCCATT---ATGAGA
32647145 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGA
* *
32647191 GGC-AGTGTAAGACCATGTCTGGGA-ATGACATCAG--CATTGAGACGAGA
1 -GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCCATT---ATGAGA
* *
32647238 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTATG-AGA
* * * *
32647284 GCCAGTGTAAGACATGTCTGGGACATGTATCAG--C--TATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGA
* * * * * *
32647325 GGTGTCAGTGTAAGACCATGTTTGGGACATGGAATTGGCACGGATATGTGAGA
1 -G-CT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-CAT-TATGAGA
* * * *
32647378 GCTAGTGTAAGACTATGTTTGGGGCATGACGTCGGCCTCGATT-TCGATA
1 GCTAGTGTAAGAC-ATGTCTGGGACATG-CATCGGCC-C-ATTAT-GAGA
*
32647427 GTTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
32647460 AACATTATAC
Statistics
Matches: 283, Mismatches: 36, Indels: 82
0.71 0.09 0.20
Matches are distributed among these distances:
40 1 0.00
41 4 0.01
42 1 0.00
43 1 0.00
44 17 0.06
45 13 0.05
46 100 0.35
47 71 0.25
48 1 0.00
49 37 0.13
50 30 0.11
51 1 0.00
52 1 0.00
53 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGA
Found at i:32647296 original size:93 final size:93
Alignment explanation
Indices: 32647052--32647269 Score: 436
Period size: 93 Copynumber: 2.3 Consensus size: 93
32647042 TTTTTTGTGT
32647052 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGGCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGGCAGTGTAAGACCATGTC
32647117 TGGGAATGACATCAGCATTGAGACGAGA
66 TGGGAATGACATCAGCATTGAGACGAGA
32647145 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGGCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGGCAGTGTAAGACCATGTC
32647210 TGGGAATGACATCAGCATTGAGACGAGA
66 TGGGAATGACATCAGCATTGAGACGAGA
32647238 GCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG
32647270 ACCTCGAGAT
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 125 1.00
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.22
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGGCAGTGTAAGACCATGTC
TGGGAATGACATCAGCATTGAGACGAGA
Found at i:32648966 original size:23 final size:21
Alignment explanation
Indices: 32648933--32648974 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
32648923 CGGCTTCCCT
32648933 CCTATATTGGTAGCCGAATAC
1 CCTATATTGGTAGCCGAATAC
*
32648954 CCTAGTATCTGGTAGCTGAAT
1 CCTA-TAT-TGGTAGCCGAAT
32648975 CTTCCTCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 3 0.17
23 11 0.61
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (21 bp):
CCTATATTGGTAGCCGAATAC
Found at i:32649936 original size:27 final size:27
Alignment explanation
Indices: 32649905--32650000 Score: 149
Period size: 27 Copynumber: 3.6 Consensus size: 27
32649895 AAGCCCTCTT
32649905 TGTGGTAAAATGACTATTTTTCCCTTA
1 TGTGGTAAAATGACTATTTTTCCCTTA
*
32649932 TGTGGTAAAATGACTATTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTTCCCTTA
*
32649959 TGTGGTAAAATGA-TTTTTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTT-CCCTTA
*
32649986 TATGGTAAAATGACT
1 TGTGGTAAAATGACT
32650001 GAAATGCCCC
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
26 5 0.08
27 57 0.90
28 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (27 bp):
TGTGGTAAAATGACTATTTTTCCCTTA
Found at i:32650038 original size:27 final size:27
Alignment explanation
Indices: 32649907--32650036 Score: 145
Period size: 27 Copynumber: 4.8 Consensus size: 27
32649897 GCCCTCTTTG
* *
32649907 TGGTAAAATGACTATTTTTCCCTTATG
1 TGGTAAAATGACTATTTTGCCCTTATA
*
32649934 TGGTAAAATGACTATTTTGCCCTTATG
1 TGGTAAAATGACTATTTTGCCCTTATA
* *
32649961 TGGTAAAATGATTTTTTTGCCCTTATA
1 TGGTAAAATGACTATTTTGCCCTTATA
** * *
32649988 TGGTAAAATGACTGA-AATGCCCCTACA
1 TGGTAAAATGACT-ATTTTGCCCTTATA
* *
32650015 TGGTAAATTGACTGTTTTGCCC
1 TGGTAAAATGACTATTTTGCCC
32650037 CTGTGTGATA
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (27 bp):
TGGTAAAATGACTATTTTGCCCTTATA
Found at i:32650405 original size:18 final size:18
Alignment explanation
Indices: 32650367--32650417 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
32650357 GGACTTGCAT
* *
32650367 ACTGTTTACTATTTCTAC
1 ACTGTTTACTGTTACTAC
*
32650385 ACTGTTTACTGTTACTGC
1 ACTGTTTACTGTTACTAC
*
32650403 ACTTTTTACTGTTAC
1 ACTGTTTACTGTTAC
32650418 AGCAAAGGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.20, C:0.22, G:0.10, T:0.49
Consensus pattern (18 bp):
ACTGTTTACTGTTACTAC
Found at i:32652647 original size:43 final size:42
Alignment explanation
Indices: 32652550--32652673 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 42
32652540 TTAGGGTTAC
** *
32652550 TGAGATTATGTGTAAGACCATATCTGGGATACT-ACATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATA-TGGCATCGATA
* * * *
32652592 AGAAACTT-CATGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTACATGTAAGACCATATCTGGGATA-TGGCATCGATA
32652635 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCG
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCG
32652674 GTACGGTACT
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 33 0.49
43 34 0.51
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:32654603 original size:46 final size:46
Alignment explanation
Indices: 32654550--32654638 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
32654540 TATATATACA
* * *
32654550 TCTCATACATGTCTCACATTAGCCATTTGGCTTTACCACATATCCG
1 TCTCATACACGTCTCACATTAGCCATTCGGCTTCACCACATATCCG
* * *
32654596 TCTCATACACGTTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 TCTCATACACGTCTCACATTAGCCATTCGGCTTCACCACATAT
32654639 ATACACTTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.34
Consensus pattern (46 bp):
TCTCATACACGTCTCACATTAGCCATTCGGCTTCACCACATATCCG
Found at i:32654681 original size:22 final size:22
Alignment explanation
Indices: 32654655--32654730 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
32654645 TTTCACGTTC
32654655 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
32654677 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
32654701 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
32654724 ATCACAT
1 ATCACAT
32654731 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:32654683 original size:47 final size:47
Alignment explanation
Indices: 32654632--32654943 Score: 482
Period size: 47 Copynumber: 6.6 Consensus size: 47
32654622 TCGGCTTCGC
* * *
32654632 CACATATATACACT-TTCACGTTCATCACATTGGCCATTCTGCCTTAT
1 CACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTAT
32654679 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
32654726 CACATATATGCATGTTCATATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * *
32654773 CACACATACGCATGCTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
32654820 CACATATATGCATGTTCATATTCATCACACTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
32654867 CACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * **
32654914 CTCATATATACACATTCACATTCATCACAT
1 CACATATATGCATGTTCACATTCATCACAT
32654944 AAAATCCTAA
Statistics
Matches: 243, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 242 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:32657025 original size:73 final size:74
Alignment explanation
Indices: 32656940--32657088 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 74
32656930 CTTGTTCTTC
*
32656940 TAGCCGTACAAGAAGAAGAAAA-AGAGGGGGGGCAAAGGCATTCGGCCTTTTGAATGAAGAGAAG
1 TAGCCGTACAAGAAGAAGAAAAGAGAGGGGGGGCAAAGGCATTCGACCTTTTGAATGAAGAGAAG
32657004 GTTAGTAAA
66 GTTAGTAAA
*
32657013 TAGCCGTACAAGAAGAAGAAAAGGAGGGGGGGGGCAAAGGCATTCGACCTTTTGAATGAAGAGAA
1 TAGCCGTACAAGAAGAAGAAAA-GAGAGGGGGGGCAAAGGCATTCGACCTTTTGAATGAAGAGAA
32657078 GGTTAGTAAA
65 GGTTAGTAAA
32657088 T
1 T
32657089 TTTGTTAATC
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
73 22 0.31
75 50 0.69
ACGTcount: A:0.39, C:0.11, G:0.34, T:0.17
Consensus pattern (74 bp):
TAGCCGTACAAGAAGAAGAAAAGAGAGGGGGGGCAAAGGCATTCGACCTTTTGAATGAAGAGAAG
GTTAGTAAA
Found at i:32658263 original size:27 final size:28
Alignment explanation
Indices: 32658154--32658276 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
32658144 GAGATTGGCG
* * * *
32658154 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
32658183 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32658211 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32658239 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32658266 CTGAGTGTGCG
1 CTAAGTGTGCG
32658277 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:32658266 original size:55 final size:57
Alignment explanation
Indices: 32658154--32658276 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
32658144 GAGATTGGCG
* * * *
32658154 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
32658211 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
32658266 CTGAGTGTGCG
1 CTAAGTGTGCG
32658277 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:32658287 original size:27 final size:27
Alignment explanation
Indices: 32658179--32658289 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
32658169 TAAATTGTAC
** * *
32658179 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
32658207 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
32658235 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
32658262 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
32658289 A
1 A
32658290 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:32675259 original size:55 final size:52
Alignment explanation
Indices: 32675079--32675325 Score: 202
Period size: 55 Copynumber: 4.7 Consensus size: 52
32675069 ACCTTACCAT
* * ** * *
32675079 TGCCATGACTTGGCATGGTCTTATGTGGTATCCTT--CTGA--AACTTACCAT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTTA-CAA
* *
32675128 TGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTTAC-AA
* *
32675181 TGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACAT-GGTATCC-TTGCCTTAT-G-AACTTA-CAA
*
32675236 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTTA-CAA
* * * * *
32675290 TTGCCTTGCCTTGGCATGGTCTTACGTTGTATCCTT
1 -TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
32675326 AAACCCTAAT
Statistics
Matches: 161, Mismatches: 23, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
49 30 0.19
51 3 0.02
52 3 0.02
53 42 0.26
54 11 0.07
55 69 0.43
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (52 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTTACAA
Found at i:32675262 original size:108 final size:110
Alignment explanation
Indices: 32675118--32675314 Score: 301
Period size: 108 Copynumber: 1.8 Consensus size: 110
32675108 ATCCTTCTGA
* * *
32675118 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACTAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
32675181 -TGCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGT
* * *
32675226 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
32675291 TGCCTTGCCTTGGCATGGTCTTAC
66 TGCCATGCCTTGGCATGGTCTTAC
32675315 GTTGTATCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.62
109 6 0.08
110 23 0.29
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGT
Found at i:32677344 original size:48 final size:48
Alignment explanation
Indices: 32677273--32677368 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
32677263 ACTAAACCCC
32677273 CTAAATACCCAAGGGGAATGAAACCTAAGATAGATCTTGTTATTATTT
1 CTAAATACCCAAGGGGAATGAAACCTAAGATAGATCTTGTTATTATTT
32677321 CTAAATACCCAAGGGGAATGAAACCTAAGATAGATCTTGTTATTATTT
1 CTAAATACCCAAGGGGAATGAAACCTAAGATAGATCTTGTTATTATTT
32677369 TCTGAATTGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (48 bp):
CTAAATACCCAAGGGGAATGAAACCTAAGATAGATCTTGTTATTATTT
Found at i:32690075 original size:79 final size:81
Alignment explanation
Indices: 32689972--32690156 Score: 243
Period size: 79 Copynumber: 2.3 Consensus size: 81
32689962 GCTACTCGTT
* *
32689972 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
* *
32690036 GATTTAGTAAC-TGGCA
65 GATATAGTAACTTAGCA
* * **
32690052 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
* *
32690116 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
32690132 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32690157 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 58 0.63
80 34 0.37
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:32690156 original size:40 final size:40
Alignment explanation
Indices: 32689953--32690156 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
32689943 CGAAATTTAA
** *
32689953 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
32689993 CCGGTTATAGTAACTCGCACAAATGCCTTCGGAACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32690033 CCGGATTTAGTAACTGGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32690072 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32690112 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32690152 CCGGA
1 CCGGA
32690157 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32695039 original size:126 final size:126
Alignment explanation
Indices: 32694508--32695031 Score: 762
Period size: 126 Copynumber: 4.2 Consensus size: 126
32694498 GAAACCACTA
32694508 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
** *** *
32694573 GTATTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACCACTG
66 GCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* * * *
32694634 TAGTAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
* ** *
32694699 GTGTTTTT-ACCACTATTTGTGCAGACACGTCTTTTCAAAATTATTTTTTCAGAGACTACTG
66 GCGTTTTTGA-CACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* * * * *
32694760 TAGCAAAAAAGCGTCTACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCTTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
* * * * *
32694825 GCGTTTTTTACACTATTTGCACAGACACGTCTTTTCAAAGTTATTTTTTTAGATACTACTG
66 GCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* * *
32694886 TAGCAAAAGAGCATCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGATTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
* *
32694951 GCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAATTTATTTTTTCAGAGACTAATG
66 GCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
*
32695012 TAGCAAAAGAGCGTTCACGT
1 TAGCAAAAGAGCGTCCACGT
32695032 AGAAGCTTTT
Statistics
Matches: 359, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
125 1 0.00
126 357 0.99
127 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (126 bp):
TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
GCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
Found at i:32695285 original size:96 final size:98
Alignment explanation
Indices: 32695140--32695315 Score: 259
Period size: 96 Copynumber: 1.8 Consensus size: 98
32695130 CCTAAAATCT
* ** * *
32695140 TAATCTAATTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTATTTGA
1 TAATCTAATTTTTTTAAAATTTATAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTAA
32695205 -TTTTTTCCTTAAAAACCATAAACACTAAACCA
66 TTTTTTTCCTTAAAAACCATAAACACTAAACCA
*
32695237 TAATCTAA-TTTTTTAAAA-TTAGTAATTAATTTAATTAACAAACACTAAACCCTAATTTATTTA
1 TAATCTAATTTTTTTAAAATTTA-TAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTA
*
32695300 ATTTTTTTTCTTAAAA
65 ATTTTTTTCCTTAAAA
32695316 CCCTAAAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
95 3 0.04
96 46 0.66
97 21 0.30
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (98 bp):
TAATCTAATTTTTTTAAAATTTATAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTAA
TTTTTTTCCTTAAAAACCATAAACACTAAACCA
Found at i:32697157 original size:13 final size:13
Alignment explanation
Indices: 32697139--32697163 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32697129 TATATGATAT
32697139 GTGTGAAAATTTC
1 GTGTGAAAATTTC
32697152 GTGTGAAAATTT
1 GTGTGAAAATTT
32697164 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:32707733 original size:13 final size:13
Alignment explanation
Indices: 32707715--32707741 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32707705 GCTCGACAGG
32707715 GACACGCCCGTGT
1 GACACGCCCGTGT
32707728 GACACGCCCGTGT
1 GACACGCCCGTGT
32707741 G
1 G
32707742 CGATTTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:32713866 original size:25 final size:27
Alignment explanation
Indices: 32713838--32713887 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
32713828 AGTTTAGCCA
32713838 ATTTAAACCCT-AGGGGT-ATTTCGGT
1 ATTTAAACCCTGAGGGGTAATTTCGGT
**
32713863 ATTTATGCCCTGAGGGGTAATTTCG
1 ATTTAAACCCTGAGGGGTAATTTCG
32713888 TACTTATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 6 0.29
27 6 0.29
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (27 bp):
ATTTAAACCCTGAGGGGTAATTTCGGT
Found at i:32713894 original size:26 final size:25
Alignment explanation
Indices: 32713845--32713896 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
32713835 CCAATTTAAA
*
32713845 CCCTAGGGGTATTTCGGTATTTATG
1 CCCTAGGGGTATTTCGGTACTTATG
32713870 CCCTGAGGGGTAATTTC-GTACTTATG
1 CCCT-AGGGGT-ATTTCGGTACTTATG
32713896 C
1 C
32713897 AACTACACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 15 0.62
27 5 0.21
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.37
Consensus pattern (25 bp):
CCCTAGGGGTATTTCGGTACTTATG
Found at i:32714254 original size:209 final size:208
Alignment explanation
Indices: 32713895--32714311 Score: 807
Period size: 209 Copynumber: 2.0 Consensus size: 208
32713885 TCGTACTTAT
* *
32713895 GCAACTACACATGTTATTTCAGTAAATTTTTTTAGCCGTTTTATGCAATTTGGTTCCACCATCTA
1 GCAACTACACACGTTATTTCAGTAAATTTTTTTAGCCATTTTATGCAATTTGGTTCCACCATCTA
32713960 ACTAACATGCTACTTTGCCCATATCTTACCCATATTGGTTCGTAAGCCCATTGGGCCCAGTTTTG
66 ACTAACATGCTACTTTGCCCATATCTTACCCATATTGGTTCGTAAGCCCATTGGGCCCAGTTTTG
32714025 GCCTATCTGGCCCCTTTTTCCGAAGTACGCTAAAATGTCACACGAACTTACTTACCACTTTGCGG
131 GCCTATCTGGCCCCTTTTTCCGAAGTACGCTAAAATGTCACACGAACTTACTTACCACTTTGCGG
32714090 TGTTAGATCTAAC
196 TGTTAGATCTAAC
32714103 GCAACTACACACGTTATTTCAGTAAACTTTTTTTAGCCATTTTATGCAATTTGGTTCCACCATCT
1 GCAACTACACACGTTATTTCAGTAAA-TTTTTTTAGCCATTTTATGCAATTTGGTTCCACCATCT
32714168 AACTAACATGCTACTTTGCCCATATCTTACCCATATTGGTTCGTAAGCCCATTGGGCCCAGTTTT
65 AACTAACATGCTACTTTGCCCATATCTTACCCATATTGGTTCGTAAGCCCATTGGGCCCAGTTTT
32714233 GGCCTATCTGGCCCCTTTTTCCGAAGTACGCTAAAATGTCACACGAACTTACTTACCACTTTGCG
130 GGCCTATCTGGCCCCTTTTTCCGAAGTACGCTAAAATGTCACACGAACTTACTTACCACTTTGCG
32714298 GTGTTAGATCTAAC
195 GTGTTAGATCTAAC
32714312 AATTACTCTA
Statistics
Matches: 206, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
208 25 0.12
209 181 0.88
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (208 bp):
GCAACTACACACGTTATTTCAGTAAATTTTTTTAGCCATTTTATGCAATTTGGTTCCACCATCTA
ACTAACATGCTACTTTGCCCATATCTTACCCATATTGGTTCGTAAGCCCATTGGGCCCAGTTTTG
GCCTATCTGGCCCCTTTTTCCGAAGTACGCTAAAATGTCACACGAACTTACTTACCACTTTGCGG
TGTTAGATCTAAC
Found at i:32714801 original size:72 final size:72
Alignment explanation
Indices: 32714684--32714826 Score: 268
Period size: 72 Copynumber: 2.0 Consensus size: 72
32714674 CAGAATTTCG
* *
32714684 GCATTTCGGCTTTTGTCGAATTGAACTAAGAAAGGGTGTTCGGTACACACCTGTTTCGCGACGAC
1 GCATTTCGGCTTTTGCCGAATTGAACTAAGAAAAGGTGTTCGGTACACACCTGTTTCGCGACGAC
32714749 TGCTACA
66 TGCTACA
32714756 GCATTTCGGCTTTTGCCGAATTGAACTAAGAAAAGGTGTTCGGTACACACCTGTTTCGCGACGAC
1 GCATTTCGGCTTTTGCCGAATTGAACTAAGAAAAGGTGTTCGGTACACACCTGTTTCGCGACGAC
32714821 TGCTAC
66 TGCTAC
32714827 TGAGATCCCT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (72 bp):
GCATTTCGGCTTTTGCCGAATTGAACTAAGAAAAGGTGTTCGGTACACACCTGTTTCGCGACGAC
TGCTACA
Found at i:32715130 original size:56 final size:56
Alignment explanation
Indices: 32715069--32716023 Score: 1892
Period size: 56 Copynumber: 17.1 Consensus size: 56
32715059 GAGCTTGGGA
32715069 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
*
32715125 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAGGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715181 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715237 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715293 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715349 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715405 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715461 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715517 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715573 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715629 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715685 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715741 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715797 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715853 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32715909 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
*
32715965 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAGGAAAGAGATCATCAAGT
1 AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
32716021 AAG
1 AAG
32716024 TCATTTCAGT
Statistics
Matches: 896, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 896 1.00
ACGTcount: A:0.48, C:0.09, G:0.23, T:0.20
Consensus pattern (56 bp):
AAGAGAAAAGAAAGGCTGATTTTGAAGCTAGAAATTCAAGAAAGAGATCATCAAGT
Found at i:32719113 original size:77 final size:77
Alignment explanation
Indices: 32718986--32719139 Score: 290
Period size: 77 Copynumber: 2.0 Consensus size: 77
32718976 AAGTGGCGTG
*
32718986 TGGAGTGCGCCTTGGGGTCTGAGGTTCGAGGTTTGGCGATGAAAAAGAAGTGATTATTTTGCTAC
1 TGGAGTGCGCCTTGGGGTCTGAGGTTCGAGGCTTGGCGATGAAAAAGAAGTGATTATTTTGCTAC
32719051 TGTGTCGTCTAA
66 TGTGTCGTCTAA
*
32719063 TGGAGTGCGCTTTGGGGTCTGAGGTTCGAGGCTTGGCGATGAAAAAGAAGTGATTATTTTGCTAC
1 TGGAGTGCGCCTTGGGGTCTGAGGTTCGAGGCTTGGCGATGAAAAAGAAGTGATTATTTTGCTAC
32719128 TGTGTCGTCTAA
66 TGTGTCGTCTAA
32719140 GAGGTTGTAC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.21, C:0.13, G:0.34, T:0.32
Consensus pattern (77 bp):
TGGAGTGCGCCTTGGGGTCTGAGGTTCGAGGCTTGGCGATGAAAAAGAAGTGATTATTTTGCTAC
TGTGTCGTCTAA
Found at i:32721563 original size:88 final size:88
Alignment explanation
Indices: 32721414--32721590 Score: 336
Period size: 88 Copynumber: 2.0 Consensus size: 88
32721404 AAAAGAAAAA
32721414 TAAACGCATTTCCAAAACACCTCGTTTACACAACATATTTTGAAAGCTTCCACAACAAACATTGT
1 TAAACGCATTTCCAAAACACCTCGTTTACACAACATATTTTGAAAGCTTCCACAACAAACATTGT
32721479 TTTAAAGTATAATAACAATCTAT
66 TTTAAAGTATAATAACAATCTAT
*
32721502 TAAACGCATTTCCAAAACACTTCGTTTACACAACATATTTTGAAAGCTTCCACAACAAACATTGT
1 TAAACGCATTTCCAAAACACCTCGTTTACACAACATATTTTGAAAGCTTCCACAACAAACATTGT
*
32721567 TTTAAAGTGTAATAACAATCTAT
66 TTTAAAGTATAATAACAATCTAT
32721590 T
1 T
32721591 CAACATTTTG
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (88 bp):
TAAACGCATTTCCAAAACACCTCGTTTACACAACATATTTTGAAAGCTTCCACAACAAACATTGT
TTTAAAGTATAATAACAATCTAT
Found at i:32728342 original size:43 final size:42
Alignment explanation
Indices: 32728245--32728354 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
32728235 GACTTGAGAT
* * *
32728245 TTACATGTAAGACCATGTCTAGGACATTGGCATCGTATATGA
1 TTACATGTAAGACCATGTCTAGGACAGTGACAACGTATATGA
* * * *
32728287 TTTCATGTAAGACCCTGTTTGGGACAGTGACAAC-TATATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGTGACAACGTATA--TGA
* *
32728330 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCATGTCTAGGAC
32728355 GTTGGCATTA
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 4 0.07
42 27 0.49
43 24 0.44
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTAGGACAGTGACAACGTATATGA
Found at i:32732855 original size:47 final size:47
Alignment explanation
Indices: 32732777--32732932 Score: 240
Period size: 47 Copynumber: 3.3 Consensus size: 47
32732767 CCCTTCGGGA
* * * * * *
32732777 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32732824 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32732871 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32732918 CTTATCACATATATA
1 CTTATCACATATATA
32732933 TATCCACATA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 99 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32734425 original size:37 final size:37
Alignment explanation
Indices: 32734375--32734453 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
32734365 TTATTACGAA
* * * *
32734375 GTCTTATCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32734412 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32734449 GTCTT
1 GTCTT
32734454 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32736395 original size:39 final size:40
Alignment explanation
Indices: 32736244--32736413 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
32736234 GGACTAAGAT
* * *
32736244 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
32736284 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
32736324 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
32736364 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
32736403 CCGAAGGCATT
1 CCGAAGGCATT
32736414 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:32737405 original size:73 final size:73
Alignment explanation
Indices: 32737284--32737428 Score: 245
Period size: 73 Copynumber: 2.0 Consensus size: 73
32737274 TTTCATATGA
* *
32737284 AAGTAACGAAACAATCATATGAACAGTACAGTAAGAGATACTCAGGTTCTTGTGGAACAGGGCCA
1 AAGTAACGAAACAATCATAGGAACAGTACAGAAAGAGATACTCAGGTTCTTGTGGAACAGGGCCA
32737349 GAACAGTG
66 GAACAGTG
* * *
32737357 AAGTAACGAAACAATTATAGGAACAGTACAGAAAGAGATATTCGGGTTCTTGTGGAACAGGGCCA
1 AAGTAACGAAACAATCATAGGAACAGTACAGAAAGAGATACTCAGGTTCTTGTGGAACAGGGCCA
32737422 GAACAGT
66 GAACAGT
32737429 TTCTGGATTC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (73 bp):
AAGTAACGAAACAATCATAGGAACAGTACAGAAAGAGATACTCAGGTTCTTGTGGAACAGGGCCA
GAACAGTG
Found at i:32737817 original size:78 final size:78
Alignment explanation
Indices: 32737688--32737838 Score: 293
Period size: 78 Copynumber: 1.9 Consensus size: 78
32737678 AAAATTCATT
*
32737688 GGTGGGGACATGAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAA
1 GGTGGGGACATGAGTCTAGTTTCAGGGAAAAATCACAAAACTAATTTTCGAGTTGTGAAACTCAA
32737753 GATATGATACATA
66 GATATGATACATA
32737766 GGTGGGGACATGAGTCTAGTTTCAGGGAAAAATCACAAAACTAATTTTCGAGTTGTGAAACTCAA
1 GGTGGGGACATGAGTCTAGTTTCAGGGAAAAATCACAAAACTAATTTTCGAGTTGTGAAACTCAA
32737831 GATATGAT
66 GATATGAT
32737839 TTTTGAAGCG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.27
Consensus pattern (78 bp):
GGTGGGGACATGAGTCTAGTTTCAGGGAAAAATCACAAAACTAATTTTCGAGTTGTGAAACTCAA
GATATGATACATA
Found at i:32738034 original size:47 final size:47
Alignment explanation
Indices: 32737969--32738069 Score: 184
Period size: 47 Copynumber: 2.1 Consensus size: 47
32737959 ACATATATAC
32737969 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
* *
32738016 ATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATTACACAT
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
32738063 ATACACT
1 ATACACT
32738070 CTCTTGGCTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
Found at i:32740420 original size:48 final size:48
Alignment explanation
Indices: 32740347--32740491 Score: 227
Period size: 48 Copynumber: 3.0 Consensus size: 48
32740337 GGGTGTCACA
*
32740347 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * * * *
32740395 TTACATTCGCCATTCGTCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
32740443 TCACATTAGCCATTTGGCTTTACCACATATACATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
32740491 T
1 T
32740492 ATCTTGTACA
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.38
Consensus pattern (48 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
Found at i:32749053 original size:38 final size:38
Alignment explanation
Indices: 32749010--32749085 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
32749000 TTCATCCTTT
*
32749010 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCCAAAATTCTAAGGAAGGAGGAA
32749048 TTCATTTCTTTTGGCCCAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCCAAAATTCTAAGGAAGGAGGAA
32749086 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCCAAAATTCTAAGGAAGGAGGAA
Found at i:32750376 original size:40 final size:40
Alignment explanation
Indices: 32750275--32750419 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
32750265 TACTCGAATG
*
32750275 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
32750316 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
32750356 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
32750396 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
32750420 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:32754800 original size:40 final size:40
Alignment explanation
Indices: 32754727--32754867 Score: 205
Period size: 40 Copynumber: 3.5 Consensus size: 40
32754717 ACCCAAGTAT
* *
32754727 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
32754766 CTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
32754806 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
32754846 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
32754868 CATCCGAATA
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 10 0.11
40 81 0.88
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:32762882 original size:40 final size:40
Alignment explanation
Indices: 32762804--32762939 Score: 177
Period size: 40 Copynumber: 3.4 Consensus size: 40
32762794 ACCCAAGTAT
* *
32762804 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
32762843 CTTTGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
32762883 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
32762923 CTTCGGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
32762940 AATGTCATCC
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 10 0.12
40 72 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:32771374 original size:13 final size:13
Alignment explanation
Indices: 32771351--32771384 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
32771341 CGATTATTAA
32771351 AATTT-ATAATTG
1 AATTTAATAATTG
32771363 AATTTAATAATTG
1 AATTTAATAATTG
32771376 AATTTAATA
1 AATTTAATA
32771385 TACTTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (13 bp):
AATTTAATAATTG
Found at i:32774400 original size:16 final size:16
Alignment explanation
Indices: 32774381--32774421 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
32774371 GATCAATTTT
32774381 AATTTTTTTGGACTTG
1 AATTTTTTTGGACTTG
* **
32774397 AATTTTTTCGGGTTTG
1 AATTTTTTTGGACTTG
32774413 AATTTTTTT
1 AATTTTTTT
32774422 AACTTAAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.17, C:0.05, G:0.17, T:0.61
Consensus pattern (16 bp):
AATTTTTTTGGACTTG
Found at i:32775647 original size:19 final size:19
Alignment explanation
Indices: 32775625--32775686 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 19
32775615 TAACAAACTA
*
32775625 AAAAATCATAAAATATTAT
1 AAAAATCATAAAATATAAT
**
32775644 -AAAATGTTAAAATATAAAT
1 AAAAATCATAAAATAT-AAT
*
32775663 AAAATATTATAAAA-ATAAT
1 AAAA-ATCATAAAATATAAT
32775682 AAAAA
1 AAAAA
32775687 ACAACCCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
18 14 0.40
19 9 0.26
20 5 0.14
21 7 0.20
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATCATAAAATATAAT
Found at i:32775667 original size:11 final size:10
Alignment explanation
Indices: 32775632--32775685 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
32775622 CTAAAAAATC
*
32775632 ATAAAATATT
1 ATAAAATATA
*
32775642 ATAAAATGT-
1 ATAAAATATA
32775651 -TAAAATATAA
1 ATAAAATAT-A
*
32775661 ATAAAATATT
1 ATAAAATATA
32775671 ATAAAA-ATA
1 ATAAAATATA
32775680 ATAAAA
1 ATAAAA
32775686 AACAACCCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
8 7 0.19
9 8 0.22
10 14 0.38
11 8 0.22
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (10 bp):
ATAAAATATA
Found at i:32776044 original size:14 final size:14
Alignment explanation
Indices: 32776003--32776044 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
32775993 TTCTTTTCAA
* *
32776003 CTCAATACTCAATA
1 CTCAATCCTCAATT
*
32776017 CTCAATCCTAAATT
1 CTCAATCCTCAATT
32776031 CTCAATCCTCAATT
1 CTCAATCCTCAATT
32776045 TTTAATTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33
Consensus pattern (14 bp):
CTCAATCCTCAATT
Found at i:32780956 original size:39 final size:40
Alignment explanation
Indices: 32780802--32780947 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 40
32780792 CTAACGGGGT
* * *
32780802 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
*
32780842 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
32780882 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* * *
32780922 TAAGACCCGACGGC-CTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
32780948 GTTATATCCA
Statistics
Matches: 94, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 12 0.13
40 82 0.87
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:32787256 original size:40 final size:40
Alignment explanation
Indices: 32787199--32787340 Score: 214
Period size: 40 Copynumber: 3.5 Consensus size: 40
32787189 CTAACGGGGT
* * * * *
32787199 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
32787239 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
32787279 TAAGTCCTGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
32787319 TAAGTCCCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGC
32787341 TAGCGACCAT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.02
40 92 0.98
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:32787353 original size:40 final size:40
Alignment explanation
Indices: 32787199--32787368 Score: 209
Period size: 40 Copynumber: 4.2 Consensus size: 40
32787189 CTAACGGGGT
* * * *
32787199 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
*
32787239 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
32787279 TAAGTCCTGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* * *
32787319 TAAGTCCCGAAGGCATTTGTGCTAGCGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
*
32787359 TAAGACCCGA
1 TAAGTCCCGA
32787369 CGGCCTTGTG
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.02
40 115 0.98
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:32787392 original size:39 final size:40
Alignment explanation
Indices: 32787235--32787409 Score: 133
Period size: 40 Copynumber: 4.4 Consensus size: 40
32787225 GATTAATTCT
* * * **
32787235 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGACCCGAAGGCACTTGTGCCAGCGACTATA-TCC
* * * * **
32787275 GGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGACCCGAAGGCACTTGTGCCAGCGACTATATCC
* * * *
32787315 GGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACCATATCC
1 GGGCTAAGACCCGAAGGCACTTGTGCCAGCGACTATATCC
* * **
32787355 GGGCTAAGACCCGACGGC-CTTGTGCCAGTGGTTATATCC
1 GGGCTAAGACCCGAAGGCACTTGTGCCAGCGACTATATCC
32787394 -GGCTAA-ATCCCGAAGG
1 GGGCTAAGA-CCCGAAGG
32787410 TAATTGGGTT
Statistics
Matches: 118, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
37 1 0.01
38 13 0.11
39 15 0.13
40 88 0.75
41 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCACTTGTGCCAGCGACTATATCC
Found at i:32799371 original size:74 final size:73
Alignment explanation
Indices: 32799247--32799430 Score: 233
Period size: 74 Copynumber: 2.5 Consensus size: 73
32799237 GTCTGTTTTT
* * * *
32799247 AAATCAACTCATTTTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTG
32799312 TTTGTCAAA
66 TTT-TCAAA
* * * * *
32799321 AAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCT-
* *
32799386 CTTTTAGAAA
65 GTTTT-CAAA
*
32799396 AAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
32799431 TGGCTCACGT
Statistics
Matches: 99, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
74 61 0.62
75 38 0.38
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTG
TTTTCAAA
Found at i:32799965 original size:76 final size:75
Alignment explanation
Indices: 32799717--32800197 Score: 568
Period size: 75 Copynumber: 6.5 Consensus size: 75
32799707 CTGTTTTTTT
* * * *
32799717 AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
32799782 TCTTTCAAAAAA
66 TCTTTC--AAAA
* * *** * *
32799794 AAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATTTT-TATTTCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTTCT
32799858 G--TTTC--AA
65 GTCTTTCAAAA
* * * *
32799865 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
32799930 TCTTTCAAAA
66 TCTTTCAAAA
* * * * *
32799940 AAATTCAACTCATACTGCAAGAAGTGATTTGAGCCTTAAGACACGTTGAGGTATTTTCAATTTCT
1 AAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCT
32800005 GTCTTTC-AAA
65 GTCTTTCAAAA
* *
32800015 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
32800080 TCTTTCAAAA
66 TCTTTCAAAA
* * * * *
32800090 TAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-GATCTCC
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTTCT
**
32800154 G--TTT-ACGA
65 GTCTTTCAAAA
* *
32800162 AAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTC
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
32800198 GAATCACATT
Statistics
Matches: 355, Mismatches: 40, Indels: 23
0.85 0.10 0.06
Matches are distributed among these distances:
70 5 0.01
71 50 0.14
72 35 0.10
73 7 0.02
74 61 0.17
75 70 0.20
76 70 0.20
77 53 0.15
78 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (75 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
TCTTTCAAAA
Found at i:32801563 original size:15 final size:15
Alignment explanation
Indices: 32801533--32801577 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
32801523 CTATATATTT
32801533 TAAAACATAGAAAAATA
1 TAAAA-ATA-AAAAATA
32801550 TAAAAATAAAAAATA
1 TAAAAATAAAAAATA
*
32801565 TATAAA-AAAAAAT
1 TAAAAATAAAAAAT
32801578 TTACCTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 7 0.26
15 12 0.44
16 3 0.11
17 5 0.19
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (15 bp):
TAAAAATAAAAAATA
Found at i:32801567 original size:17 final size:16
Alignment explanation
Indices: 32801533--32801576 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
32801523 CTATATATTT
*
32801533 TAAAACATAGAAAAATA
1 TAAAA-ATAAAAAAATA
32801550 TAAAAATAAAAAATATA
1 TAAAAATAAAAAA-ATA
32801567 TAAAAA-AAAA
1 TAAAAATAAAA
32801577 TTTACCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 11 0.44
17 14 0.56
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (16 bp):
TAAAAATAAAAAAATA
Found at i:32803742 original size:21 final size:21
Alignment explanation
Indices: 32803716--32803758 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
32803706 GTCCCACTCG
*
32803716 CATAGTAGGTAGGATGAAAAA
1 CATAGTAGATAGGATGAAAAA
32803737 CATAGTAGATAGGATGAAAAA
1 CATAGTAGATAGGATGAAAAA
32803758 C
1 C
32803759 TTTGCTCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.07, G:0.26, T:0.19
Consensus pattern (21 bp):
CATAGTAGATAGGATGAAAAA
Found at i:32807095 original size:43 final size:43
Alignment explanation
Indices: 32807034--32807198 Score: 183
Period size: 43 Copynumber: 3.8 Consensus size: 43
32807024 CAATGTCATA
* * *
32807034 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
*
32807077 TCCCAGACA-GTGTCTTACATGAAATCACAATAT-GATGCCAATG
1 TCCCAGACATG-GTCTTACATGTAATCAC-ATATCGATGCCAATG
* * * * *
32807120 TCCCAGATATGGTCTTACACGTAATCAGA-ATACAATTCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATAT-CGATGCCAATG
* *
32807163 TTCCAGACATGGTCTTACATGTAATCACATCTCGAT
1 TCCCAGACATGGTCTTACATGTAATCACATATCGAT
32807199 AACCTAATAT
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 90 0.90
44 6 0.06
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:32807179 original size:86 final size:86
Alignment explanation
Indices: 32807034--32807191 Score: 212
Period size: 86 Copynumber: 1.8 Consensus size: 86
32807024 CAATGTCATA
* * * * *
32807034 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGACAGTGTCTTACATGA
1 TCCCAGATATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGACAGTGTCTTACATGA
32807099 AATCACAATATGATGCCAATG
66 AATCACAATATGATGCCAATG
* *
32807120 TCCCAGATATGGTCTTACACGTAATCAGAATA-CAATTCCAATGTTCCAGACA-TGGTCTTACAT
1 TCCCAGATATGGTCTTACACGTAATCA-AATATCAATGCCAATGTCCCAGACAGT-GTCTTACAT
*
32807183 GTAATCACA
64 GAAATCACA
32807192 TCTCGATAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 1 0.02
86 58 0.94
87 3 0.05
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (86 bp):
TCCCAGATATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGACAGTGTCTTACATGA
AATCACAATATGATGCCAATG
Found at i:32812264 original size:37 final size:37
Alignment explanation
Indices: 32812200--32812271 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
32812190 AGCTCAGATG
* *
32812200 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGAGTCTTACCCGGACA
*
32812237 AAATCTCCACACGTAGTCATCGAGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGAGTCTTACCCGGA
32812272 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGAGTCTTACCCGGACA
Found at i:32812473 original size:48 final size:48
Alignment explanation
Indices: 32812418--32812998 Score: 1004
Period size: 48 Copynumber: 12.1 Consensus size: 48
32812408 ACACATCGCC
*
32812418 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32812466 TACATATTTCACATTAGCCATTCGGCTTTACCACATA-ACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32812513 TACATATTTCACATTAGCCATTCGGCTTTACCACATAAACATATCTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT--CA
* * *
32812563 TATATATTTCACATTAACCATTCGGCTTTACAACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32812611 TACATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32812659 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32812707 TACATATTTCACATTAGCCATTCGGCTTTACCACATA-ACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32812754 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
32812802 TACATATTTCACATTAGCCATTCGGCTTTCCCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32812850 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
32812898 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32812946 TACATATTTCACATTAGCCATTCGGCTTTACCACGTATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
32812994 TACAT
1 TACAT
32812999 CAATTTCCGC
Statistics
Matches: 510, Mismatches: 19, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
47 93 0.18
48 373 0.73
50 44 0.09
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:32812937 original size:239 final size:240
Alignment explanation
Indices: 32812418--32812998 Score: 1020
Period size: 239 Copynumber: 2.4 Consensus size: 240
32812408 ACACATCGCC
*
32812418 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
32812483 CCATTCGGCTTTACCACATAACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
66 CCATTCGGCTTTACCACATAACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
*
32812548 TAAACATATCTCACATATATATTTCACATTAACCATTCGGCTTTACAACATATACATATCTCATA
131 TAAACATATCT-ACATACATATTTCACATTAACCATTCGGCTTTACAACATATACATATCTCATA
32812613 CATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
195 CATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
*
32812659 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
32812724 CCATTCGGCTTTACCACATAACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
66 CCATTCGGCTTTACCACATAACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
** * * * *
32812789 TATGCATATCT-CATACATATTTCACATTAGCCATTCGGCTTTCCCACATATACTTATCTCATAC
131 TAAACATATCTACATACATATTTCACATTAACCATTCGGCTTTACAACATATACATATCTCATAC
* *
32812853 ATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
196 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
32812898 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
32812963 CCATTCGGCTTTACCACGTATACATATCTCATACAT
66 CCATTCGGCTTTACCACATA-ACTTATCTCATACAT
32812999 CAATTTCCGC
Statistics
Matches: 325, Mismatches: 14, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
239 174 0.54
240 14 0.04
241 137 0.42
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (240 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATAACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
TAAACATATCTACATACATATTTCACATTAACCATTCGGCTTTACAACATATACATATCTCATAC
ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
Found at i:32816115 original size:28 final size:27
Alignment explanation
Indices: 32816084--32816174 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 27
32816074 CTGACTGATT
*
32816084 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTC-ATTAAAGAAC
* *
32816112 TCGCACACATAGTGTCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTC-ATTA-AAGAAC
*
32816141 TCGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCA-TTAAAGAAC
32816169 TCGCAC
1 TCGCAC
32816175 TCTCAGTGCC
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.04
28 26 0.50
29 23 0.44
30 1 0.02
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCATTAAAGAAC
Found at i:32816430 original size:40 final size:40
Alignment explanation
Indices: 32816398--32816664 Score: 363
Period size: 40 Copynumber: 6.7 Consensus size: 40
32816388 CCAGCATGAT
* * *
32816398 TGCTCTTCGGGACCTAGCCCGGTTATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * * *
32816438 TGCTCTTCGGGACTTAACCCTGATATAGCTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* *
32816478 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
32816518 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * *
32816558 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
32816598 TGCTCTTCGGGACTTAGCCTGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
32816638 TGCTCTTCGGGACGTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
32816665 TATAACTCTC
Statistics
Matches: 199, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 199 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
Found at i:32816599 original size:120 final size:120
Alignment explanation
Indices: 32816398--32816662 Score: 404
Period size: 120 Copynumber: 2.2 Consensus size: 120
32816388 CCAGCATGAT
* * *
32816398 TGCTCTTCGGGACCTAGCCCGGTTATAACACCAGCACGAATGCTCTTCGGGACTTAACCCTGATA
1 TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAACCCGGATA
* * *
32816463 TAGCTCTAGCACAAATGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
66 CAGCACTAGCACAAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
32816518 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAACCCGGATA
* * *
32816583 CATCACTAGCACAAATGCTCTTCGGGACTTAGCCTGGATATAACACCAGCACAAA
66 CAGCACTAGCACAAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACAAA
*
32816638 TGCTCTTCGGGACGTAGCCCGGATA
1 TGCTCTTCGGGACCTAGCCCGGATA
32816663 TATATAACTC
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 131 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (120 bp):
TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAACCCGGATA
CAGCACTAGCACAAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACAAA
Found at i:32818195 original size:48 final size:48
Alignment explanation
Indices: 32818140--32818672 Score: 1003
Period size: 48 Copynumber: 11.1 Consensus size: 48
32818130 ACACATCGCC
* *
32818140 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
32818188 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
32818236 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
32818284 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
32818332 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
32818380 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
32818428 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
32818476 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
*
32818524 TACATATGTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
32818572 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
* *
32818620 TACATATTTCACATTAGCCATTCGGCTTTACCACTTATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
32818668 TACAT
1 TACAT
32818673 CAATTTCCAC
Statistics
Matches: 477, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 477 1.00
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
Found at i:32834271 original size:28 final size:29
Alignment explanation
Indices: 32834226--32834303 Score: 81
Period size: 28 Copynumber: 2.7 Consensus size: 29
32834216 TACATACATG
*
32834226 CATATGGCCCA-CTTGGCCCAATCTCAT-TT
1 CATATGGCCCATC-AGGCCCAAT-TCATATT
*
32834255 -ATATGGCCCATCAGGCCCAATTGATATT
1 CATATGGCCCATCAGGCCCAATTCATATT
* *
32834283 CATATGGCCAATTAGGCCCAA
1 CATATGGCCCATCAGGCCCAA
32834304 ATCACATGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
27 3 0.07
28 20 0.48
29 19 0.45
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATCAGGCCCAATTCATATT
Found at i:32834299 original size:29 final size:29
Alignment explanation
Indices: 32834226--32834303 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
32834216 TACATACATG
*
32834226 CATATGGCCCACTT-GGCCCAATCTCATTT
1 CATATGG-CCAATTAGGCCCAATCTCATTT
* * *
32834255 -ATATGGCCCATCAGGCCCAAT-TGATATT
1 CATATGGCCAATTAGGCCCAATCTCAT-TT
32834283 CATATGGCCAATTAGGCCCAA
1 CATATGGCCAATTAGGCCCAA
32834304 ATCACATGCA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
27 6 0.15
28 16 0.40
29 18 0.45
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
CATATGGCCAATTAGGCCCAATCTCATTT
Found at i:32834315 original size:29 final size:29
Alignment explanation
Indices: 32834221--32834316 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 29
32834211 ACCCCTACAT
*
32834221 ACATGCATATGGCCCACTT-GGCCC-AATC
1 ACATGCATATGG-CCAATTAGGCCCAAATC
* ** * * * *
32834249 TCATTTATATGGCCCATCAGGCCCAATTG
1 ACATGCATATGGCCAATTAGGCCCAAATC
* *
32834278 ATATTCATATGGCCAATTAGGCCCAAATC
1 ACATGCATATGGCCAATTAGGCCCAAATC
32834307 ACATGCATAT
1 ACATGCATAT
32834317 TCATGCTCAC
Statistics
Matches: 49, Mismatches: 17, Indels: 3
0.71 0.25 0.04
Matches are distributed among these distances:
27 3 0.06
28 14 0.29
29 32 0.65
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (29 bp):
ACATGCATATGGCCAATTAGGCCCAAATC
Found at i:32834577 original size:24 final size:24
Alignment explanation
Indices: 32834532--32834577 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
32834522 CTAACCTTCA
*
32834532 ACTTTTCGACATTTCAGTTTTTTG
1 ACTTTTCGACATTTCAGCTTTTTG
** *
32834556 ACTTTTCGGTATTTCGGCTTTT
1 ACTTTTCGACATTTCAGCTTTT
32834578 GCGGATTCAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.13, C:0.17, G:0.15, T:0.54
Consensus pattern (24 bp):
ACTTTTCGACATTTCAGCTTTTTG
Found at i:32838883 original size:43 final size:43
Alignment explanation
Indices: 32838818--32838989 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
32838808 GCTAGTACAG
* * * *
32838818 TGCC-ATATCTCAGATATGGTCTTACATGTTATCACATATCGA
1 TGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCGA
* * **
32838860 TGCCACTATCCCAGACAAGGTCTTACACAAAATCACAATAT-GA
1 TGCCAATATCCCAGACATGGTCTTACACGTAATCAC-ATATCGA
* * *
32838903 TGCCAATGTCCCAGACATGGTCTTACACGTAATCA-AAATACAA
1 TGCCAATATCCCAGACATGGTCTTACACGTAATCACATAT-CGA
* * * *
32838946 TGCCAATGTCCCATACATGGTCTTACATGTAATCACATCTCGA
1 TGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCGA
32838989 T
1 T
32838990 AACCTAATGT
Statistics
Matches: 105, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
41 3 0.03
42 4 0.04
43 92 0.88
44 6 0.06
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (43 bp):
TGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCGA
Found at i:32850150 original size:55 final size:54
Alignment explanation
Indices: 32850086--32850223 Score: 170
Period size: 55 Copynumber: 2.5 Consensus size: 54
32850076 GGTATCTCCC
*
32850086 CAATGCCATGCCTTGGCATGGTCTTACATG-GGACCTTTTCCATATAGTAACTCAT
1 CAATGCCATGCCTTGGCATGGTCTTACATGAGGACC-TTGCCATATAG-AACTCAT
* * *** * *
32850141 CAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTAT
1 CAATGCCATGCCTTGGCATGGTCTTACATGAGGACCTTGCCATATAGAACTCAT
*
32850195 CAATGCCATGCCTTGGCATGGCCTTACAT
1 CAATGCCATGCCTTGGCATGGTCTTACAT
32850224 AATATCCTTA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
54 32 0.45
55 37 0.52
56 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (54 bp):
CAATGCCATGCCTTGGCATGGTCTTACATGAGGACCTTGCCATATAGAACTCAT
Found at i:32850221 original size:54 final size:55
Alignment explanation
Indices: 32850086--32850232 Score: 181
Period size: 54 Copynumber: 2.7 Consensus size: 55
32850076 GGTATCTCCC
** *
32850086 CAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCATATAGTAACTCAT
1 CAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCATATAGTAACTCAT
* * * * *
32850141 CAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAG-AACTTAT
1 CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCATATAGTAACTCAT
* *
32850195 CAATGCCATGCCTTGGCATGGCCTTACATAATATCCTT
1 CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
32850233 ATCTTACCAA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
54 39 0.50
55 37 0.47
56 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (55 bp):
CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCATATAGTAACTCAT
Found at i:32850268 original size:47 final size:47
Alignment explanation
Indices: 32850211--32850332 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
32850201 CATGCCTTGG
* ** * * *
32850211 CATGGCCTTACATAATATCCTTATCTTACCAAATGCTATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
*
32850258 CATGGTCTTACATGGTATCTTTGTCTTACCAAATACCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
*
32850305 CATGGTATTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
32850333 GTGCCAATGC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
Found at i:32855877 original size:13 final size:13
Alignment explanation
Indices: 32855861--32855885 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32855851 TTCCACAGTA
32855861 CTTTTCAAAAGCG
1 CTTTTCAAAAGCG
32855874 CTTTTCAAAAGC
1 CTTTTCAAAAGC
32855886 ATTGCCAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (13 bp):
CTTTTCAAAAGCG
Found at i:32858578 original size:27 final size:27
Alignment explanation
Indices: 32858525--32858579 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
32858515 ATGACCAAGA
*
32858525 TACCCCTATAGGGTAAAATGATTATTT
1 TACCCCTATAGGGTAAAATGATGATTT
32858552 TACCCCTCA-AGGGT-AAATGACTGATTT
1 TACCCCT-ATAGGGTAAAATGA-TGATTT
32858579 T
1 T
32858580 TGCTATGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 6 0.24
27 18 0.72
28 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (27 bp):
TACCCCTATAGGGTAAAATGATGATTT
Found at i:32858727 original size:27 final size:27
Alignment explanation
Indices: 32858687--32858769 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
32858677 TGTATTATAT
*
32858687 TGGTGGCTTCGCCACATATACTGTTAC
1 TGGTGGCTTTGCCACATATACTGTTAC
*
32858714 TGGTGGCTTTGCCACATATACTGATAC
1 TGGTGGCTTTGCCACATATACTGTTAC
** ** *
32858741 TGGCAGCTTTGCTGC-GATACTGTTAC
1 TGGTGGCTTTGCCACATATACTGTTAC
32858767 TGG
1 TGG
32858770 CAGCCTTGAT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 12 0.25
27 36 0.75
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (27 bp):
TGGTGGCTTTGCCACATATACTGTTAC
Found at i:32858785 original size:26 final size:26
Alignment explanation
Indices: 32858731--32858785 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
32858721 TTTGCCACAT
* *
32858731 ATACTGATACTGGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCCTTGATGCG
* *
32858757 ATACTGTTACTGGCAGCCTTGATGTG
1 ATACTGATACTGGCAGCCTTGATGCG
32858783 ATA
1 ATA
32858786 ATGGTGTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (26 bp):
ATACTGATACTGGCAGCCTTGATGCG
Found at i:32861310 original size:7 final size:7
Alignment explanation
Indices: 32861295--32861347 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
32861285 ATTTGATGGA
*
32861295 GGTTCAG
1 GGTTTAG
32861302 GGTTTAG
1 GGTTTAG
32861309 GGTTTAG
1 GGTTTAG
*
32861316 GGTTTAA
1 GGTTTAG
** *
32861323 ATTTTAA
1 GGTTTAG
32861330 GGTTTAG
1 GGTTTAG
*
32861337 GGTTTAA
1 GGTTTAG
32861344 GGTT
1 GGTT
32861348 CGACCTTATC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:32861328 original size:21 final size:21
Alignment explanation
Indices: 32861304--32861343 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32861294 AGGTTCAGGG
*
32861304 TTTAGGGTTTAGGGTTTAAAT
1 TTTAAGGTTTAGGGTTTAAAT
32861325 TTTAAGGTTTAGGGTTTAA
1 TTTAAGGTTTAGGGTTTAA
32861344 GGTTCGACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (21 bp):
TTTAAGGTTTAGGGTTTAAAT
Found at i:32867824 original size:18 final size:18
Alignment explanation
Indices: 32867801--32867844 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
32867791 ATCAGTAAAT
32867801 AAATAAATAAA-TAAAAGA
1 AAATAAA-AAATTAAAAGA
*
32867819 AAATAAAAAATTTAAAGA
1 AAATAAAAAATTAAAAGA
*
32867837 AAAGAAAA
1 AAATAAAA
32867845 TAAAGAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (18 bp):
AAATAAAAAATTAAAAGA
Found at i:32867834 original size:23 final size:22
Alignment explanation
Indices: 32867769--32867848 Score: 72
Period size: 23 Copynumber: 3.5 Consensus size: 22
32867759 AATAATCAAT
* *
32867769 AGAAAATGAAAAAATCCAAATAATC
1 AGAAAAT-AAAAAAT-TAAATAA-A
*
32867794 AGTAAATAAATAAA-TAAATAAA
1 AGAAAATAAA-AAATTAAATAAA
*
32867816 AGAAAATAAAAAATTTAAAGAAA
1 AGAAAATAAAAAA-TTAAATAAA
32867839 AGAAAATAAA
1 AGAAAATAAA
32867849 GAATATGGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
21 3 0.06
22 9 0.19
23 23 0.49
24 3 0.06
25 9 0.19
ACGTcount: A:0.71, C:0.04, G:0.07, T:0.17
Consensus pattern (22 bp):
AGAAAATAAAAAATTAAATAAA
Found at i:32875713 original size:45 final size:45
Alignment explanation
Indices: 32875647--32875902 Score: 144
Period size: 45 Copynumber: 5.6 Consensus size: 45
32875637 TATGGTATCA
* * *
32875647 ACCATAGCTGAAAGACACTATGGTATCAC-AGTTCAAACGAGTAAG
1 ACCATAGTTGAAAGACACTATGGCATCACGA-TCCAAACGAGTAAG
* * *
32875692 ACCATAGTTGAAAGA-AGCTATGACATCACGATCCGAACGTGTAAG
1 ACCATAGTTGAAAGACA-CTATGGCATCACGATCCAAACGAGTAAG
* * * * * * *
32875737 ACCATTGTTGAAAGACACTATGGCAACAAGA-CAGAAAATGAATAAA
1 ACCATAGTTGAAAGACACTATGGCATCACGATC--CAAACGAGTAAG
* * * * ** *
32875783 ACCATAATTGAAAGACACTATGACAAT-ATGA-CGGAAAATAGATACG
1 ACCATAGTTGAAAGACACTATGGC-ATCACGATC-CAAACGAG-TAAG
* * * ** ** *
32875829 ACCATTGTTGAAAGACACTATGGCAACATGATAGAAATAAATAAG
1 ACCATAGTTGAAAGACACTATGGCATCACGATCCAAACGAGTAAG
* *
32875874 ACCATAGTTGAAAGATATTATGGCATCAC
1 ACCATAGTTGAAAGACACTATGGCATCAC
32875903 AATGGAAATA
Statistics
Matches: 161, Mismatches: 41, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
44 2 0.01
45 93 0.58
46 65 0.40
47 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.21
Consensus pattern (45 bp):
ACCATAGTTGAAAGACACTATGGCATCACGATCCAAACGAGTAAG
Found at i:32875796 original size:46 final size:45
Alignment explanation
Indices: 32875733--32875898 Score: 190
Period size: 46 Copynumber: 3.6 Consensus size: 45
32875723 TCCGAACGTG
* *
32875733 TAAGACCATTGTTGAAAGACACTATGGCAACAAGACAGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACATGACAGAAAAT-AA
* * * * *
32875779 TAAAACCATAATTGAAAGACACTATGACAATATGACGGAAAATAGA
1 TAAGACCATAGTTGAAAGACACTATGGCAACATGACAGAAAATA-A
* * *
32875825 TACGACCATTGTTGAAAGACACTATGGCAACATGATAG-AAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACATGACAGAAAAT-AA
* *
32875870 TAAGACCATAGTTGAAAGATATTATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
32875899 TCACAATGGA
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
45 31 0.31
46 68 0.69
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCAACATGACAGAAAATAA
Found at i:32875911 original size:45 final size:45
Alignment explanation
Indices: 32875733--32875938 Score: 146
Period size: 46 Copynumber: 4.5 Consensus size: 45
32875723 TCCGAACGTG
* * * *
32875733 TAAGACCATTGTTGAAAGACACTATGGCAACA-AGACAGAAAATGAA
1 TAAGACCATAGTTGAAAGACATTATGGCAACACA-ATAG-AAATAAA
* * * * * ** ** *
32875779 TAAAACCATAATTGAAAGACACTATGACAATATGACGGAAAATAGA
1 TAAGACCATAGTTGAAAGACATTATGGCAACACAATAG-AAATAAA
* * * **
32875825 TACGACCATTGTTGAAAGACACTATGGCAACATGATAGAAATAAA
1 TAAGACCATAGTTGAAAGACATTATGGCAACACAATAGAAATAAA
* * *
32875870 TAAGACCATAGTTGAAAGATATTATGGCATCACAATGGAAATAAGA
1 TAAGACCATAGTTGAAAGACATTATGGCAACACAATAGAAATAA-A
* *
32875916 -AAGACCATGGATGAAAGACATTA
1 TAAGACCATAGTTGAAAGACATTA
32875939 AGGCTTTCTC
Statistics
Matches: 129, Mismatches: 29, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
45 62 0.48
46 67 0.52
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACATTATGGCAACACAATAGAAATAAA
Found at i:32883094 original size:27 final size:27
Alignment explanation
Indices: 32883063--32883117 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
32883053 TTTATGCGAT
32883063 ATAGTCCTTTTTCACAATTAAGCTCTC
1 ATAGTCCTTTTTCACAATTAAGCTCTC
*
32883090 ATAGTCCTTTTTCGCAATTAAGCTCTC
1 ATAGTCCTTTTTCACAATTAAGCTCTC
32883117 A
1 A
32883118 AACGCTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.25, G:0.09, T:0.40
Consensus pattern (27 bp):
ATAGTCCTTTTTCACAATTAAGCTCTC
Found at i:32885729 original size:21 final size:21
Alignment explanation
Indices: 32885686--32885731 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
32885676 GTACTCACTC
32885686 TCTTTTTACTCACTCTCAATT
1 TCTTTTTACTCACTCTCAATT
* * * *
32885707 TCTTTTTTCTCTCTTTCATTT
1 TCTTTTTACTCACTCTCAATT
32885728 TCTT
1 TCTT
32885732 GTTTGATTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.11, C:0.26, G:0.00, T:0.63
Consensus pattern (21 bp):
TCTTTTTACTCACTCTCAATT
Found at i:32890363 original size:40 final size:40
Alignment explanation
Indices: 32890300--32890444 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
32890290 CATTTGAATG
* *
32890300 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGA-T
* * *
32890340 TTATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* *
32890380 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* *
32890420 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
32890445 ATTGTGCTTG
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 91 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
Found at i:32890463 original size:80 final size:80
Alignment explanation
Indices: 32890300--32890471 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 80
32890290 CATTTGAATG
* * * * *
32890300 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCAAAGGCA
* *
32890365 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* * *
32890380 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCAAAGGC
** *
32890444 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
32890460 ATATCC-GGCTAA
1 ATATCCGGGCTAA
32890472 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCAAAGGCA
ATTGTGCGAGTGGAT
Found at i:32892016 original size:10 final size:11
Alignment explanation
Indices: 32892001--32892069 Score: 76
Period size: 11 Copynumber: 6.7 Consensus size: 11
32891991 ATTTTGATAT
*
32892001 ACATGATTTG-
1 ACATGATATGC
32892011 ACATGATATGC
1 ACATGATATGC
32892022 ACATGATATG-
1 ACATGATATGC
*
32892032 -TATGATATGC
1 ACATGATATGC
32892042 ACATGATATG-
1 ACATGATATGC
*
32892052 -TATGATATGC
1 ACATGATATGC
32892062 ACATGATA
1 ACATGATA
32892070 AATTCATATA
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
9 16 0.33
10 9 0.18
11 24 0.49
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:32892038 original size:20 final size:20
Alignment explanation
Indices: 32892013--32892069 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
32892003 ATGATTTGAC
32892013 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
32892033 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
32892053 ATGATATGCACATGATA
1 ATGATATGCACATGATA
32892070 AATTCATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:32892152 original size:26 final size:26
Alignment explanation
Indices: 32892117--32892212 Score: 160
Period size: 25 Copynumber: 3.8 Consensus size: 26
32892107 GAGGAAGTGC
32892117 AAAAGGGCTTTGCCCCAGTTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTACCGA
*
32892143 AAAAGGGCTTTGCCCCAGTTTACAGA
1 AAAAGGGCTTTGCCCCAGTTTACCGA
*
32892169 AAAA-GGCTTTGCCCCAGTTTATCG-
1 AAAAGGGCTTTGCCCCAGTTTACCGA
32892193 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
32892213 ATTAAAAGGG
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.06
25 33 0.50
26 29 0.44
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTACCGA
Found at i:32892195 original size:51 final size:50
Alignment explanation
Indices: 32892117--32892212 Score: 165
Period size: 51 Copynumber: 1.9 Consensus size: 50
32892107 GAGGAAGTGC
*
32892117 AAAAGGGCTTTGCCCCAGTTTACCGAAAAAGGGCTTTGCCCCAGTTTACAG
1 AAAAAGGCTTTGCCCCAGTTTACCG-AAAAGGGCTTTGCCCCAGTTTACAG
*
32892168 AAAAAGGCTTTGCCCCAGTTTATCGAAAAGGGCTTTGCCCCAGTT
1 AAAAAGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTT
32892213 ATTAAAAGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
50 20 0.47
51 23 0.53
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAAGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACAG
Found at i:32892478 original size:31 final size:31
Alignment explanation
Indices: 32892440--32892515 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
32892430 GTAAAGGCTC
32892440 CGGCCCAGTGATATGAATAATGAAAAGACTT
1 CGGCCCAGTGATATGAATAATGAAAAGACTT
* * *
32892471 CGGCCCAGTGACATGAATAATGTAAAGGCTT
1 CGGCCCAGTGATATGAATAATGAAAAGACTT
*
32892502 TGGCCCAGT-ATATG
1 CGGCCCAGTGATATG
32892516 CTGAGATTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.10
31 36 0.90
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (31 bp):
CGGCCCAGTGATATGAATAATGAAAAGACTT
Found at i:32913660 original size:47 final size:47
Alignment explanation
Indices: 32913467--32913735 Score: 201
Period size: 47 Copynumber: 5.7 Consensus size: 47
32913457 GATGAGAGCT
* ** *
32913467 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGA-GATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTAACG-TGAAAGCC
* * * * ** *
32913513 AATGTAAGA-CATGTCTGGGATAT-GCATCGGC-T-ACATGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAACGTGA-AAGCC
* * * * * * * *
32913557 AGTGTAAGACCTTGTCTGCGACGTGGTATCGGCATGGATACGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-T-TA-ACGTGAAAGCC
* * * **
32913607 AATGTAAAACAATGTCTGGGACATGGCATCGACTTAACGTGAAAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAACGTGAAAGCC
* *
32913654 AGTGTAAGACCATGTCTGGAACATGGCATCGACTTAACGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAACGTGAAAGCC
32913701 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT
32913736 TATACCCTAT
Statistics
Matches: 177, Mismatches: 37, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
43 3 0.02
44 10 0.06
45 12 0.07
46 33 0.19
47 83 0.47
48 1 0.01
49 1 0.01
50 29 0.16
51 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAACGTGAAAGCC
Found at i:32917637 original size:83 final size:81
Alignment explanation
Indices: 32917485--32917706 Score: 305
Period size: 83 Copynumber: 2.8 Consensus size: 81
32917475 AACCCAAGTA
* *
32917485 CCTTCGGGATTTAG-CCGGATATAGCAACT-TGCACACATGCCTTCGGG---TAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTATGCACAAATGCCTTCGGGACTTAGCCCGGATATA
32917545 GTCACTAGCACAAATG
66 GTCACTAGCACAAATG
* * * *
32917561 CCTTCGGAACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCAGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA-T-GCACAAATGCCTTCGGGACTTAGCCCGGATA
32917626 TAGTCACTAGCACAAATG
64 TAGTCACTAGCACAAATG
*
32917644 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA-GCACAAATACCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTATGCACAAATGCCTTCGGGACTTAGCCCGGATAT
32917707 CATCCGAATA
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
76 12 0.09
77 14 0.11
79 1 0.01
80 45 0.35
83 54 0.43
84 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTATGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCACTAGCACAAATG
Found at i:32917650 original size:40 final size:40
Alignment explanation
Indices: 32917485--32917706 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
32917475 AACCCAAGTA
* * *
32917485 CCTTCGGGATTTAG-CCGGATATAG-CAACTTGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
32917524 CCTTCGGG---TAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
32917561 CCTTCGGAACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
* *
32917604 CCTTCGGGACTTCGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
32917644 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
32917684 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
32917707 CATCCGAATA
Statistics
Matches: 162, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
36 3 0.02
37 28 0.17
38 1 0.01
39 9 0.06
40 86 0.53
43 34 0.21
44 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:32924499 original size:47 final size:45
Alignment explanation
Indices: 32924389--32924499 Score: 118
Period size: 48 Copynumber: 2.4 Consensus size: 45
32924379 ATATTTGTGT
* *
32924389 GCTAGTGTAAGACATGTCTGGGATATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTAGGATATGCATCGG-CACATTACGAGA
* *
32924435 GCCAGTGTAAGTCCATGTCTAGGATATGGCATC-G-ACATTGAGACGAGA
1 GCTAGTGTAAG-ACATGTCTAGGATAT-GCATCGGCACATT---ACGAGA
32924483 GCTAGTGTAAGACATGT
1 GCTAGTGTAAGACATGT
32924500 ATGGGACATG
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
45 5 0.09
46 10 0.19
47 19 0.35
48 20 0.37
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTAGGATATGCATCGGCACATTACGAGA
Found at i:32931858 original size:40 final size:40
Alignment explanation
Indices: 32931779--32931920 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
32931769 AACCCAAGTA
* * * *
32931779 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATG
32931818 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
* * *
32931858 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
32931898 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
32931921 CATCCGAATA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.14
40 79 0.84
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
Found at i:32933303 original size:13 final size:13
Alignment explanation
Indices: 32933285--32933310 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32933275 ATTTTTATTT
32933285 TTAACATAAAATA
1 TTAACATAAAATA
32933298 TTAACATAAAATA
1 TTAACATAAAATA
32933311 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Done.