Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 113 of 276
Found at i:35846220 original size:42 final size:42
Alignment explanation
Indices: 35846131--35846221 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
35846121 TCCTAATTGG
* * *
35846131 GAAAATAATTCCCTTATTTTAATAAACTACTAAAACATGAGA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
* *
35846173 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
*
35846215 TAAAATA
1 GAAAATA
35846222 TTTCTAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.30
Consensus pattern (42 bp):
GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
Found at i:35846265 original size:19 final size:18
Alignment explanation
Indices: 35846243--35846282 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
35846233 TTAATAAAAC
35846243 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
35846262 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
35846280 TTA
1 TTA
35846283 AAATATACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:35850012 original size:36 final size:36
Alignment explanation
Indices: 35849971--35850042 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
35849961 TTGAAGTTTC
*
35849971 AATCTTATTTGATTTGTAAAATTCTTGAATTTTTTT
1 AATCTTATTTGATCTGTAAAATTCTTGAATTTTTTT
35850007 AATCTTATTTGATCTGTAAAATTCTTGAATTTTTTT
1 AATCTTATTTGATCTGTAAAATTCTTGAATTTTTTT
35850043 TTCAAATACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.07, G:0.08, T:0.57
Consensus pattern (36 bp):
AATCTTATTTGATCTGTAAAATTCTTGAATTTTTTT
Found at i:35851132 original size:135 final size:135
Alignment explanation
Indices: 35850915--35851167 Score: 402
Period size: 135 Copynumber: 1.9 Consensus size: 135
35850905 CATTTTTTAT
* *
35850915 ATGATAAATTGTGTCATGTAGCATCCAATGATTGGTCTACGTGTCAAAAAATGTCATGTCAAATT
1 ATGATAAATTGTGTCATGTAGCATCCAATGATTGGTCTACATGTCAAAAAATGCCATGTCAAATT
* * *
35850980 TCCGTTAGAGATTTTAATATGAGTGATCAAAATGAACAAACTATGTAAAGTAGTATGCAACACTT
66 TCCATTAGAGATTTTAATAGGAGTGACCAAAATGAACAAACTATGTAAAGTAGTATGCAACACTT
35851045 ATGAC
131 ATGAC
*
35851050 ATGATAAATTGTG-CTATGT-GACATCCAATGATTGGTCTACATGTCAAAAAATGCCATGTCAGA
1 ATGATAAATTGTGTC-ATGTAG-CATCCAATGATTGGTCTACATGTCAAAAAATGCCATGTCAAA
* *
35851113 TTTCCATTAGAGATTTTAATAGGAGTGACCAAAATGAACGAACTATGTAACGTAG
64 TTTCCATTAGAGATTTTAATAGGAGTGACCAAAATGAACAAACTATGTAAAGTAG
35851168 GTATCTAAAT
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
134 2 0.02
135 106 0.98
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (135 bp):
ATGATAAATTGTGTCATGTAGCATCCAATGATTGGTCTACATGTCAAAAAATGCCATGTCAAATT
TCCATTAGAGATTTTAATAGGAGTGACCAAAATGAACAAACTATGTAAAGTAGTATGCAACACTT
ATGAC
Found at i:35852364 original size:26 final size:26
Alignment explanation
Indices: 35852335--35852439 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
35852325 TGATACATAT
35852335 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
35852361 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
35852387 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
35852413 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
35852439 T
1 T
35852440 AATGGGCATT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:35854107 original size:27 final size:27
Alignment explanation
Indices: 35854041--35854181 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
35854031 AGGAAGCGTC
*
35854041 CTGGTGGCTATGCCACA-ATTATCTGA-
1 CTGGTGGCTCTGCCACATA-TATCTGAT
35854067 CTGGTGGCTCTGCCACATATATCT-AT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
35854093 CCTGGTGGCTATGCCACA-ATTATCTGAT
1 -CTGGTGGCTCTGCCACATA-TATCTGAT
*
35854121 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
35854148 CTGGTGGCTCTACCACATATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
35854176 CTGGTG
1 CTGGTG
35854182 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
25 1 0.01
26 22 0.22
27 69 0.68
28 10 0.10
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:35854152 original size:54 final size:54
Alignment explanation
Indices: 35854039--35854181 Score: 218
Period size: 54 Copynumber: 2.6 Consensus size: 54
35854029 GGAGGAAGCG
35854039 TCCTGGTGGCTATGCCACAATTATCTGA-CTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
*
35854092 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
* * *
35854146 TTCTGGTGGCTCTACCAC-ATATATCTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAAT-TATCTG-ATCTGGTG
35854182 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 30 0.36
54 45 0.54
55 8 0.10
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
Found at i:35854196 original size:27 final size:27
Alignment explanation
Indices: 35854060--35854199 Score: 100
Period size: 27 Copynumber: 5.2 Consensus size: 27
35854050 ATGCCACAAT
*
35854060 TATCTG-A-CTGGTGGCTCTGCCACATA
1 TATCTGTATCTGGTGGCTC-GTCACATA
* *
35854086 TATC--TATCCTGGTGGCTATGCCACA-A
1 TATCTGTAT-CTGGTGGCT-CGTCACATA
*
35854112 TTATCTG-ATCTGGTGGCTCTGCCACATA
1 -TATCTGTATCTGGTGGCTC-GTCACATA
35854140 TATCTGT-TCTGGTGGCTC-TACCACATA
1 TATCTGTATCTGGTGGCTCGT--CACATA
*
35854167 TATCTGTATCTGGTGACTTCGTCACA-A
1 TATCTGTATCTGGTGGC-TCGTCACATA
35854194 TATCTG
1 TATCTG
35854200 GCAACCTCGC
Statistics
Matches: 95, Mismatches: 4, Indels: 29
0.74 0.03 0.23
Matches are distributed among these distances:
25 1 0.01
26 5 0.05
27 71 0.75
28 15 0.16
29 2 0.02
30 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCGTCACATA
Found at i:35859147 original size:26 final size:26
Alignment explanation
Indices: 35859111--35859192 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
35859101 TGATACAAAT
35859111 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
35859137 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
35859163 TGATAATGGTTTGGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
35859189 TGAT
1 TGAT
35859193 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.05, G:0.27, T:0.39
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:35860393 original size:27 final size:27
Alignment explanation
Indices: 35860296--35860399 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
35860286 AGGAAGCGTC
*
35860296 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
35860323 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
35860350 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
35860377 CTGGTGACT-TCGTCACAATATCT
1 CTGGTGGCTCT-GCCACAATATCT
35860400 AGCAGCCTCG
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
26 9 0.13
27 60 0.86
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:35861619 original size:32 final size:31
Alignment explanation
Indices: 35861570--35861636 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 31
35861560 GAAATAGATA
*
35861570 CATGTGGCGAAGAGAGTAATT-TTTTAGCAAAG
1 CATGTGGCAAAGAGAGT-ATTCTTTTAGC-AAG
35861602 CATGTGGCAAATG-GAGTATTCTTTTAGCAAG
1 CATGTGGCAAA-GAGAGTATTCTTTTAGCAAG
35861633 CATG
1 CATG
35861637 GTCAGATATG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
31 10 0.31
32 21 0.66
33 1 0.03
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (31 bp):
CATGTGGCAAAGAGAGTATTCTTTTAGCAAG
Found at i:35867632 original size:12 final size:12
Alignment explanation
Indices: 35867617--35867656 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
35867607 AGAAGTGTTA
35867617 GAGAAAGTCTTC
1 GAGAAAGTCTTC
* *
35867629 GAGAGAAGTGTTA
1 GAGA-AAGTCTTC
35867642 GAGAAAGTCTTC
1 GAGAAAGTCTTC
35867654 GAG
1 GAG
35867657 GTTAGTTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.35, C:0.10, G:0.33, T:0.23
Consensus pattern (12 bp):
GAGAAAGTCTTC
Found at i:35867635 original size:25 final size:25
Alignment explanation
Indices: 35867607--35867656 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
35867597 GGGTTGTGAA
35867607 AGAAGTGTTAGAGAAAGTCTTCGAG
1 AGAAGTGTTAGAGAAAGTCTTCGAG
35867632 AGAAGTGTTAGAGAAAGTCTTCGAG
1 AGAAGTGTTAGAGAAAGTCTTCGAG
35867657 GTTAGTTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.32, T:0.24
Consensus pattern (25 bp):
AGAAGTGTTAGAGAAAGTCTTCGAG
Found at i:35868431 original size:5 final size:5
Alignment explanation
Indices: 35868396--35868437 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
35868386 AATCCCTGTG
*
35868396 ATTTT -TTTT ATATTT ATTTT -TTTT ATGTT ATTTT ATTTT ATT
1 ATTTT ATTTT AT-TTT ATTTT ATTTT ATTTT ATTTT ATTTT ATT
35868438 GTTAAAAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 8 0.25
5 19 0.59
6 5 0.16
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:35868440 original size:16 final size:15
Alignment explanation
Indices: 35868396--35868441 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
35868386 AATCCCTGTG
35868396 ATTTTTTTTATAT-TT
1 ATTTTTTTTAT-TGTT
35868411 ATTTTTTTTA-TGTT
1 ATTTTTTTTATTGTT
35868425 ATTTTATTTTATTGTT
1 ATTTT-TTTTATTGTT
35868441 A
1 A
35868442 AAAGGGGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 1 0.04
14 7 0.25
15 15 0.54
16 5 0.18
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (15 bp):
ATTTTTTTTATTGTT
Found at i:35870683 original size:48 final size:48
Alignment explanation
Indices: 35870614--35870751 Score: 188
Period size: 48 Copynumber: 2.9 Consensus size: 48
35870604 TAGGGTTATG
* *
35870614 TGTGATCCCATGTAAGACCATGT-TAGGGACATGGTATTGGCACCGATA
1 TGTGATCCCATGTAAGACCATGTCT-GGGACATGGCATTGGCACCAATA
* *
35870662 TGTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATA
* * * *
35870710 GGTAATCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
35870752 TCTTACTATG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
48 79 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATA
Found at i:35875166 original size:17 final size:19
Alignment explanation
Indices: 35875124--35875168 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
35875114 CTTTATTTTC
35875124 TTATTTATTGTTCTAATAT
1 TTATTTATTGTTCTAATAT
35875143 TTGATTTATTGTTCT-AT-T
1 TT-ATTTATTGTTCTAATAT
35875161 TTATTTAT
1 TTATTTAT
35875169 CTTAGTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.24
18 3 0.12
19 4 0.16
20 12 0.48
ACGTcount: A:0.22, C:0.04, G:0.07, T:0.67
Consensus pattern (19 bp):
TTATTTATTGTTCTAATAT
Found at i:35877273 original size:17 final size:18
Alignment explanation
Indices: 35877251--35877284 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35877241 TGAATTGGGC
35877251 CGTGTG-GACCACACGGA
1 CGTGTGAGACCACACGGA
*
35877268 CGTGTGAGTCCACACGG
1 CGTGTGAGACCACACGG
35877285 GTGTGTGGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.29, G:0.35, T:0.15
Consensus pattern (18 bp):
CGTGTGAGACCACACGGA
Found at i:35882334 original size:80 final size:79
Alignment explanation
Indices: 35882210--35882361 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 79
35882200 AGTGATTAAT
* * * *
35882210 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTCTGGGCTAAG-CGCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCAATTCTGGACTAAGAC-CCAAAGGC-CT
35882274 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
*
35882290 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC-ATATCTGGACTAAGACCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCAAT-TCTGGACTAAGACCCAAAGGCCTT
35882354 GTGCGAGT
65 GTGCGAGT
35882362 GGTTATATCC
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
79 12 0.18
80 52 0.80
81 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCAATTCTGGACTAAGACCCAAAGGCCTTG
TGCGAGTTACTATA
Found at i:35882350 original size:40 final size:40
Alignment explanation
Indices: 35882177--35882325 Score: 203
Period size: 40 Copynumber: 3.7 Consensus size: 40
35882167 CTAATGGGGT
* *
35882177 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* *
35882217 TAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* * *
35882257 TAAG-CGCCAAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTC-CCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGC
35882297 TAAGTCCCGAAGGCATTTGTGCTAGTGAC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGAC
35882326 CATATCTGGA
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 92 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
Found at i:35882370 original size:39 final size:40
Alignment explanation
Indices: 35882177--35882377 Score: 133
Period size: 40 Copynumber: 5.1 Consensus size: 40
35882167 CTAATGGGGT
* * * * * *
35882177 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCGGGC
1 TAAGACCCGAAGGCACTTGTGCGAGTGACTATA-TCCGGAC
* * * * * *
35882217 TAAGTCCCGAAGGCATTTGTGCTAGTTACTA-ATTCTGGGC
1 TAAGACCCGAAGGCACTTGTGCGAGTGACTATA-TCCGGAC
* * * *
35882257 TAAG-CGCCAAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGAC-CCGAAGGCACTTGTGCGAGTGACTATATCCGGAC
* * * * *
35882297 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCTGGAC
1 TAAGACCCGAAGGCACTTGTGCGAGTGACTATATCCGGAC
**
35882337 TAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCCGG-C
1 TAAGACCCGAAGGCACTTGTGCGAGTGACTATATCCGGAC
35882375 TAA
1 TAA
35882378 ATCCCAAAGA
Statistics
Matches: 138, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 4 0.03
39 18 0.13
40 114 0.83
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGACCCGAAGGCACTTGTGCGAGTGACTATATCCGGAC
Found at i:35889346 original size:40 final size:40
Alignment explanation
Indices: 35889297--35889374 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
35889287 CATTCTTTCA
* *
35889297 CAAAAAAATGATATCAATAATATCCTTTCTTCTATTGTTT
1 CAAAAAAATGATATCAAGAATATCCTTTCTACTATTGTTT
* *
35889337 CAAAAAAATGATATCAAGGATATTCTTTCTACTATTGT
1 CAAAAAAATGATATCAAGAATATCCTTTCTACTATTGT
35889375 CAAATTACAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (40 bp):
CAAAAAAATGATATCAAGAATATCCTTTCTACTATTGTTT
Found at i:35900487 original size:24 final size:24
Alignment explanation
Indices: 35900455--35900501 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
35900445 ATGCACAGCC
*
35900455 AGAAACAGATACAATTTCAGATTT
1 AGAAACAGATACAAATTCAGATTT
* *
35900479 AGAATCAGATCCAAATTCAGATT
1 AGAAACAGATACAAATTCAGATT
35900502 ACAAAAACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.28
Consensus pattern (24 bp):
AGAAACAGATACAAATTCAGATTT
Found at i:35901014 original size:34 final size:34
Alignment explanation
Indices: 35900965--35901076 Score: 136
Period size: 34 Copynumber: 3.3 Consensus size: 34
35900955 TGGGCCCACA
* **
35900965 TGCCCTTGTGGGCCCATATTCCCAATTTGACCTT
1 TGCCCGTGTGGGCCCATACGCCCAATTTGACCTT
* *
35900999 TTCCCGTGTGGGCCCATACGCCCAATTTGCCCTT
1 TGCCCGTGTGGGCCCATACGCCCAATTTGACCTT
* * *
35901033 TGCCCGTGTGGGCCCACAC-CTCAATTTGCCCTT
1 TGCCCGTGTGGGCCCATACGCCCAATTTGACCTT
*
35901066 TGCCCATGTGG
1 TGCCCGTGTGG
35901077 CCTACACGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
33 23 0.33
34 46 0.67
ACGTcount: A:0.12, C:0.36, G:0.21, T:0.30
Consensus pattern (34 bp):
TGCCCGTGTGGGCCCATACGCCCAATTTGACCTT
Found at i:35905024 original size:28 final size:28
Alignment explanation
Indices: 35904984--35905040 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
35904974 AAGACATTCT
35904984 TCAGCAGGACGCAGTCAATCTATTGTCC
1 TCAGCAGGACGCAGTCAATCTATTGTCC
*
35905012 TCAGCAGGACGCAGTCAATCTGTTGTCC
1 TCAGCAGGACGCAGTCAATCTATTGTCC
35905040 T
1 T
35905041 TCACGCTCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (28 bp):
TCAGCAGGACGCAGTCAATCTATTGTCC
Found at i:35911411 original size:21 final size:22
Alignment explanation
Indices: 35911387--35911440 Score: 56
Period size: 27 Copynumber: 2.3 Consensus size: 22
35911377 TGTAGGAGGA
35911387 GTGAGT-TTATGAAAGCTCAAT
1 GTGAGTATTATGAAAGCTCAAT
35911408 GTGAGTCTAAGATTATGAAAGCTCAAT
1 GTGAG--T---ATTATGAAAGCTCAAT
35911435 GTGAGT
1 GTGAGT
35911441 CTAAGAGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
21 5 0.19
23 1 0.04
25 1 0.04
27 20 0.74
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.31
Consensus pattern (22 bp):
GTGAGTATTATGAAAGCTCAAT
Found at i:35911423 original size:27 final size:28
Alignment explanation
Indices: 35911393--35911451 Score: 111
Period size: 27 Copynumber: 2.1 Consensus size: 28
35911383 AGGAGTGAGT
35911393 TTATGAAAGCTCAATGTGAGTCTAAGA-
1 TTATGAAAGCTCAATGTGAGTCTAAGAG
35911420 TTATGAAAGCTCAATGTGAGTCTAAGAG
1 TTATGAAAGCTCAATGTGAGTCTAAGAG
35911448 TTAT
1 TTAT
35911452 CTAAACAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (28 bp):
TTATGAAAGCTCAATGTGAGTCTAAGAG
Found at i:35914701 original size:46 final size:47
Alignment explanation
Indices: 35914518--35914831 Score: 238
Period size: 46 Copynumber: 6.7 Consensus size: 47
35914508 TTATTTGTGT
* * *
35914518 GCCAGAGTAAGACATGTTTGGGACAT-GCATCGGCCAC-ATTATG-AGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGG-CACGA-GATGTAGA
* * * *
35914564 GCTAGTGTAAGATCATGCCTGGGACATGGCATCGGCATTGAGACG-AGA
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCA-CGAGATGTAGA
* * *
35914612 GCTAGTGTAAGACATGCCTGGGACAT-GCATCGGCCTCGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGG-CACGAGATGTAGA
*
35914658 GCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCTACGAGATGT---
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGGC-ACGAGATGTAGA
* * * * *
35914702 GTCAGTGTAAGACCATATTTGGGACATGGCATCAGCACGAATATGTGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCACG-AGATGT-AGA
* * ** *
35914752 GCTAGTGTAAGAACATGTTTGGGACATGGCATC-G-ACTTGATGGATGA
1 GCCAGTGTAAG-ACATGTCTGGGACATGGCATCGGCACGAGATGTA-GA
*
35914799 GCCAGTGTAAGACGATGTATGGGACATGGCATC
1 GCCAGTGTAAGAC-ATGTCTGGGACATGGCATC
35914832 AACATTATAC
Statistics
Matches: 222, Mismatches: 29, Indels: 33
0.78 0.10 0.12
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 76 0.34
47 63 0.28
48 26 0.12
49 2 0.01
50 28 0.13
51 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCACGAGATGTAGA
Found at i:35918570 original size:15 final size:15
Alignment explanation
Indices: 35918543--35918586 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
35918533 TATAGTTCCG
35918543 TATCTTGGGATTTCTC
1 TATCTT-GGATTTCTC
*
35918559 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
35918574 TA-CTTGGTTTTCT
1 TATCTTGGATTTCT
35918587 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 10 0.38
16 6 0.23
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:35921865 original size:46 final size:47
Alignment explanation
Indices: 35921718--35921984 Score: 219
Period size: 46 Copynumber: 5.7 Consensus size: 47
35921708 TTTGTGTGCC
* * *
35921718 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTGTCAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-AGAGCT
* * * * * **
35921764 AGTGTAAGATCATGTATTGGACATGGCATCGACATTGAGA-CAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCT
*
35921812 AGTGTAAGACATGTCTGGGACATGCCTCGGCCTCGAGATGTA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCT
* * *
35921858 AGTGTAAGACATGTCTGGGACATGCATCGG-TTATGAGATGT-G-TC-
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCT
* * *
35921902 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACGAATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-AGATGT-AGAGCT
*
35921952 AGTGTAAGAACATGTCTAGGACATGGCATCGGC
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGC
35921985 ATTATACCCT
Statistics
Matches: 175, Mismatches: 30, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
44 9 0.05
45 17 0.10
46 71 0.41
47 25 0.14
48 22 0.13
49 2 0.01
50 28 0.16
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCT
Found at i:35925556 original size:18 final size:18
Alignment explanation
Indices: 35925533--35925570 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
35925523 CAATATCCAA
35925533 CCCTGGGTATCATGATAT
1 CCCTGGGTATCATGATAT
35925551 CCCTGGGTATCATGATAT
1 CCCTGGGTATCATGATAT
35925569 CC
1 CC
35925571 ATGTAGGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (18 bp):
CCCTGGGTATCATGATAT
Found at i:35929136 original size:14 final size:13
Alignment explanation
Indices: 35929108--35929133 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35929098 ATTTTTTTAC
35929108 CTTTTTTAAAAAA
1 CTTTTTTAAAAAA
35929121 CTTTTTTAAAAAA
1 CTTTTTTAAAAAA
35929134 ACTCCAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
CTTTTTTAAAAAA
Found at i:35933385 original size:50 final size:50
Alignment explanation
Indices: 35933301--35933495 Score: 187
Period size: 50 Copynumber: 3.9 Consensus size: 50
35933291 ATTATAGAAA
* * * *
35933301 ATCAAATATAAGATCACATATGTGCATACCTATATGGCTGAATATGCAAG
1 ATCAAATATAACATCAAATATGTACATACCTATATGGCCGAATATGCAAG
* * * *
35933351 ATCAAATTTAACATCAAATATGTACTTACTTATATGGCCGAATATACAA-
1 ATCAAATATAACATCAAATATGTACATACCTATATGGCCGAATATGCAAG
* * * * * * * *
35933400 ATTTAAATATAATATCACATTTGTGCATACCT-TCATGGCCAAATATTCAAA
1 A-TCAAATATAACATCAAATATGTACATACCTAT-ATGGCCGAATATGCAAG
* * *
35933451 ATCCAATATAACATCACATATGTACATACCTATGTGGCCGAATAT
1 ATCAAATATAACATCAAATATGTACATACCTATATGGCCGAATAT
35933496 ATACAAGGTC
Statistics
Matches: 116, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
49 2 0.02
50 112 0.97
51 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (50 bp):
ATCAAATATAACATCAAATATGTACATACCTATATGGCCGAATATGCAAG
Found at i:35933417 original size:100 final size:100
Alignment explanation
Indices: 35933304--35933496 Score: 262
Period size: 100 Copynumber: 1.9 Consensus size: 100
35933294 ATAGAAAATC
** * *
35933304 AAATATAAGATCACATATGTGCATACCTAT-ATGGCTGAATATGCAAGATCAAATTTAACATCAA
1 AAATATAAGATCACATATGTGCATACCT-TCATGGCCAAATATGCAAAATCAAATATAACATCAA
* *
35933368 ATATGTACTTACTTATATGGCCGAATATACAAATTT
65 ATATGTACATACCTATATGGCCGAATATACAAATTT
* * * * *
35933404 AAATATAATATCACATTTGTGCATACCTTCATGGCCAAATATTCAAAATCCAATATAACATCACA
1 AAATATAAGATCACATATGTGCATACCTTCATGGCCAAATATGCAAAATCAAATATAACATCAAA
*
35933469 TATGTACATACCTATGTGGCCGAATATA
66 TATGTACATACCTATATGGCCGAATATA
35933497 TACAAGGTCA
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 1 0.01
100 79 0.99
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (100 bp):
AAATATAAGATCACATATGTGCATACCTTCATGGCCAAATATGCAAAATCAAATATAACATCAAA
TATGTACATACCTATATGGCCGAATATACAAATTT
Found at i:35954154 original size:36 final size:36
Alignment explanation
Indices: 35954107--35954179 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
35954097 TCATATGTTA
*
35954107 ATACGTCGTCTCTACAGCAAATATAATTATGGGTTT
1 ATACGTCGTCTCTACACCAAATATAATTATGGGTTT
35954143 ATACGTCGTCTCTACACCAAATATAATTATGGGTTT
1 ATACGTCGTCTCTACACCAAATATAATTATGGGTTT
35954179 A
1 A
35954180 GAATTGATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Consensus pattern (36 bp):
ATACGTCGTCTCTACACCAAATATAATTATGGGTTT
Found at i:35962257 original size:85 final size:84
Alignment explanation
Indices: 35962134--35962369 Score: 292
Period size: 85 Copynumber: 2.8 Consensus size: 84
35962124 TTGTTGTGGG
* *
35962134 TGCACAACATATTTGAAGATTAAACAAACTGCCACTTGGTTCATGATTGAACCACATATTTGTAG
1 TGCACAACATATTTGCATATTAAACAAACTG-CACTTGGTTCATGATTGAACCACATATTTGTAG
35962199 TTACTACCACTTGTTATGAA
65 TTACTACCACTTGTTATGAA
* * * *
35962219 TGCACAACATATTTGCATATTAAACAAAATGCGACTTGGTTCATGATCGAACCACATATATGCAG
1 TGCACAACATATTTGCATATTAAACAAACTGC-ACTTGGTTCATGATTGAACCACATATTTGTAG
* ** * *
35962284 TTATTGTCACTTGTTGTGAG
65 TTACTACCACTTGTTATGAA
* * * * *
35962304 TACACAACATATTTGCATACTAAACTAACTGTCACTTGGTTCCTAATTGAACCACACTATTTGTA
1 TGCACAACATATTTGCATATTAAACAAACTG-CACTTGGTTCATGATTGAACCACA-TATTTGTA
35962369 G
64 G
35962370 ATTAAATTGC
Statistics
Matches: 128, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
84 1 0.01
85 119 0.93
86 8 0.06
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (84 bp):
TGCACAACATATTTGCATATTAAACAAACTGCACTTGGTTCATGATTGAACCACATATTTGTAGT
TACTACCACTTGTTATGAA
Found at i:35967193 original size:16 final size:15
Alignment explanation
Indices: 35967172--35967201 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
35967162 GAAATGTTTT
35967172 TGATTAATTGATATTC
1 TGATTAATTG-TATTC
35967188 TGATTAATTGTATT
1 TGATTAATTGTATT
35967202 TATTTATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.03, G:0.13, T:0.53
Consensus pattern (15 bp):
TGATTAATTGTATTC
Found at i:35969509 original size:28 final size:27
Alignment explanation
Indices: 35969477--35969536 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
35969467 TAATAACATA
35969477 AAATAA-AACAAATAAAAGAATGAAAAAG
1 AAATAATAA-AAATAAAAGAA-GAAAAAG
* * *
35969505 AAATAATAAACATAATAGAAGAAAATG
1 AAATAATAAAAATAAAAGAAGAAAAAG
35969532 AAATA
1 AAATA
35969537 GGGAGAAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 11 0.39
28 15 0.54
29 2 0.07
ACGTcount: A:0.72, C:0.03, G:0.10, T:0.15
Consensus pattern (27 bp):
AAATAATAAAAATAAAAGAAGAAAAAG
Found at i:35970216 original size:7 final size:7
Alignment explanation
Indices: 35970206--35970231 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
35970196 ATAAAGGTTA
35970206 AAAATGT
1 AAAATGT
35970213 AAAATGT
1 AAAATGT
35970220 AAAATGT
1 AAAATGT
35970227 AAAAT
1 AAAAT
35970232 AATATATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.27
Consensus pattern (7 bp):
AAAATGT
Found at i:35970475 original size:25 final size:25
Alignment explanation
Indices: 35970447--35970514 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 25
35970437 ATTTTTTATT
35970447 TTGATGAATATTTTGAGTTATGCCA
1 TTGATGAATATTTTGAGTTATGCCA
*
35970472 TTGATGAATATTTTGGGTTATGCCA
1 TTGATGAATATTTTGAGTTATGCCA
*
35970497 TTGATGAATA-ATTGAGTT
1 TTGATGAATATTTTGAGTT
35970515 TTGTGATGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 6 0.15
25 34 0.85
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (25 bp):
TTGATGAATATTTTGAGTTATGCCA
Found at i:35971219 original size:43 final size:42
Alignment explanation
Indices: 35971169--35971285 Score: 173
Period size: 43 Copynumber: 2.7 Consensus size: 42
35971159 TGTGTATTCG
35971169 TGTAAGACCACGTCTGGGACGTAGGCATCGTTATGTGATTACA
1 TGTAAGACCACGTCTGGGACGT-GGCATCGTTATGTGATTACA
*
35971212 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTGGCATCGTTATGTGATTACA
*
35971255 TGTAAGACCACATCTGGGACGTTGGCATCGT
1 TGTAAGACCACGTCTGGGACG-TGGCATCGT
35971286 ATGATATGTG
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
42 2 0.03
43 62 0.93
44 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTGGCATCGTTATGTGATTACA
Found at i:35974382 original size:16 final size:15
Alignment explanation
Indices: 35974355--35974403 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
35974345 AGTTAATATT
35974355 TATATATGATTTAAAG
1 TATATAT-ATTTAAAG
*
35974371 TATATGATATTTAATG
1 TATAT-ATATTTAAAG
*
35974387 T-TATTTATTTAAAG
1 TATATATATTTAAAG
35974401 TAT
1 TAT
35974404 TCAGATTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 9 0.32
15 4 0.14
16 13 0.46
17 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (15 bp):
TATATATATTTAAAG
Found at i:35977591 original size:9 final size:10
Alignment explanation
Indices: 35977565--35977589 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
35977555 TATGTATACA
35977565 TTTTTTAATT
1 TTTTTTAATT
35977575 TTTTTTAATT
1 TTTTTTAATT
35977585 TTTTT
1 TTTTT
35977590 AAGAACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTAATT
Found at i:35978734 original size:13 final size:13
Alignment explanation
Indices: 35978716--35978746 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
35978706 TAGTTTTAAT
35978716 AATAAAAAAATAA
1 AATAAAAAAATAA
*
35978729 AATAAAATAATAA
1 AATAAAAAAATAA
35978742 AATAA
1 AATAA
35978747 TAAATAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (13 bp):
AATAAAAAAATAA
Found at i:35981127 original size:25 final size:24
Alignment explanation
Indices: 35981097--35981147 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
35981087 CATGGTGGTT
35981097 TGAGGAGTTTATACTCCTCATTCC
1 TGAGGAGTTTATACTCCTCATTCC
* *
35981121 TGNAGGAGTTTTTTCTCCTCATTCC
1 TG-AGGAGTTTATACTCCTCATTCC
35981146 TG
1 TG
35981148 CTGTCAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.41
Consensus pattern (24 bp):
TGAGGAGTTTATACTCCTCATTCC
Found at i:35982487 original size:30 final size:30
Alignment explanation
Indices: 35982440--35982499 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
35982430 TTCCCGAGCC
*
35982440 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
35982470 TAGGGGAAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGT-GTAATTATGCAAAAGTT
35982500 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:35990235 original size:65 final size:65
Alignment explanation
Indices: 35990131--35990521 Score: 764
Period size: 65 Copynumber: 6.0 Consensus size: 65
35990121 AACTTCAACA
35990131 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
1 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
35990196 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
1 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
35990261 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
1 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
35990326 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
1 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
35990391 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
1 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
* *
35990456 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAATTTGTTCGTTTCTCCCATG
1 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
35990521 T
1 T
35990522 AACACCACAT
Statistics
Matches: 324, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 324 1.00
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (65 bp):
TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
Found at i:35991671 original size:12 final size:11
Alignment explanation
Indices: 35991656--35991733 Score: 66
Period size: 13 Copynumber: 6.4 Consensus size: 11
35991646 TTATACCTCA
35991656 TTTTTCTTTTTC
1 TTTTT-TTTTTC
35991668 TTTTTTTCCTTTTC
1 -TTTTTT--TTTTC
*
35991682 TTTTTATTTTC
1 TTTTTTTTTTC
35991693 TTTTTTATTTTC
1 TTTTTT-TTTTC
35991705 TCTCTTTTTTTTCC
1 T-T-TTTTTTTT-C
*
35991719 TTTTTCTTTTC
1 TTTTTTTTTTC
35991730 TTTT
1 TTTT
35991734 CTTATTTTTC
Statistics
Matches: 56, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
11 15 0.27
12 14 0.25
13 16 0.29
14 11 0.20
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:35991679 original size:9 final size:8
Alignment explanation
Indices: 35991662--35991751 Score: 51
Period size: 8 Copynumber: 10.8 Consensus size: 8
35991652 CTCATTTTTC
35991662 TTTTTCTT
1 TTTTTCTT
35991670 TTTTTCCTT
1 TTTTT-CTT
35991679 TTCTTT-TT
1 TT-TTTCTT
*
35991687 ATTTTCTT
1 TTTTTCTT
35991695 TTTTAT-TT
1 TTTT-TCTT
* *
35991703 TCTCTCTTT
1 TTTTTC-TT
35991712 TTTTTCCTT
1 TTTTT-CTT
35991721 TTTCTT-TT
1 TTT-TTCTT
*
35991729 CTTTTCTT
1 TTTTTCTT
*
35991737 ATTTTTCAT
1 -TTTTTCTT
35991746 TTTTTC
1 TTTTTC
35991752 AGGTCTTCTT
Statistics
Matches: 63, Mismatches: 9, Indels: 20
0.68 0.10 0.22
Matches are distributed among these distances:
7 6 0.10
8 29 0.46
9 22 0.35
10 6 0.10
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTCTT
Found at i:35991685 original size:25 final size:23
Alignment explanation
Indices: 35991657--35991733 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 23
35991647 TATACCTCAT
35991657 TTTTCTTTTTCTTTTTTTCCTTTTC
1 TTTT-TTTTTCTTTTTTT-CTTTTC
35991682 TTTTTATTTTCTTTTTTAT-TTTCTC
1 TTTTT-TTTTCTTTTTT-TCTTT-TC
*
35991707 TCTTTTTTTTC-CTTTTTCTTTTC
1 T-TTTTTTTTCTTTTTTTCTTTTC
35991730 TTTT
1 TTTT
35991734 CTTATTTTTC
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
22 3 0.07
23 4 0.09
24 11 0.24
25 23 0.50
26 5 0.11
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTTTTCTTTTTTTCTTTTC
Found at i:35991695 original size:31 final size:28
Alignment explanation
Indices: 35991656--35991728 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
35991646 TTATACCTCA
*
35991656 TTTTTCTTTTTCTTTTTTTCCTTTTCTTTT
1 TTTTTCTTTTTCTTTTTTT-C-TCTCTTTT
*
35991686 TATTTTC-TTTT-TTATTTTCTCTCTTTT
1 T-TTTTCTTTTTCTTTTTTTCTCTCTTTT
*
35991713 TTTTCCTTTTTCTTTT
1 TTTTTCTTTTTCTTTT
35991729 CTTTTCTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
26 4 0.11
27 12 0.33
28 4 0.11
29 6 0.17
30 5 0.14
31 5 0.14
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (28 bp):
TTTTTCTTTTTCTTTTTTTCTCTCTTTT
Found at i:35991704 original size:37 final size:38
Alignment explanation
Indices: 35991662--35991751 Score: 112
Period size: 37 Copynumber: 2.4 Consensus size: 38
35991652 CTCATTTTTC
*
35991662 TTTTTCTTTTTTTCCTTTTCTTTTTATTTTCTTTT-TTA
1 TTTTTCTTTTTTT-CTTTCCTTTTTATTTTCTTTTCTTA
* *
35991700 TTTTCTCTCTTTTT-TTTCCTTTTTCTTTTCTTTTCTTA
1 TTTT-TCTTTTTTTCTTTCCTTTTTATTTTCTTTTCTTA
*
35991738 TTTTTCATTTTTTC
1 TTTTTCTTTTTTTC
35991752 AGGTCTTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
37 25 0.57
38 11 0.25
39 8 0.18
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (38 bp):
TTTTTCTTTTTTTCTTTCCTTTTTATTTTCTTTTCTTA
Found at i:35991724 original size:32 final size:30
Alignment explanation
Indices: 35991656--35991733 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 30
35991646 TTATACCTCA
*
35991656 TTTTTCTTTTTCTTTTTTTCCTTTTCTTTT
1 TTTTTCTTTTTCTTTTTCTCCTTTTCTTTT
35991686 TATTTTCTTTTT-TATTTTCTCTCTTTT-TTTT
1 T-TTTTCTTTTTCT-TTTTCTC-CTTTTCTTTT
35991717 CCTTTTTC-TTTTCTTTT
1 --TTTTTCTTTTTCTTTT
35991734 CTTATTTTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
30 2 0.05
31 27 0.66
32 11 0.27
33 1 0.02
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (30 bp):
TTTTTCTTTTTCTTTTTCTCCTTTTCTTTT
Found at i:35991741 original size:25 final size:24
Alignment explanation
Indices: 35991670--35991741 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 24
35991660 TCTTTTTCTT
*
35991670 TTTTTCCTTTTC-TTTTTATTTTCT
1 TTTTT-CTTTTCTTTTTTATTTTCC
*
35991694 TTTTTATTTTCTCTCTTTT-TTTTCC
1 TTTTTCTTTTCT-T-TTTTATTTTCC
35991719 TTTTTCTTTTCTTTTCTTATTTT
1 TTTTTCTTTTCTTTT-TTATTTT
35991742 TCATTTTTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
23 7 0.17
24 8 0.20
25 21 0.52
26 4 0.10
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (24 bp):
TTTTTCTTTTCTTTTTTATTTTCC
Found at i:35994591 original size:30 final size:30
Alignment explanation
Indices: 35994555--35994615 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
35994545 GAGTTTTCAG
* *
35994555 GATCCACACGGGCTGGGCACACGCCCATGT
1 GATCCACACGGGCAGGCCACACGCCCATGT
35994585 GATCCACACGGGCAGGCCACACGCCCATGT
1 GATCCACACGGGCAGGCCACACGCCCATGT
35994615 G
1 G
35994616 CCAGCCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.21, C:0.38, G:0.30, T:0.11
Consensus pattern (30 bp):
GATCCACACGGGCAGGCCACACGCCCATGT
Found at i:35998852 original size:26 final size:26
Alignment explanation
Indices: 35998816--35998868 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35998806 CCGTATGAGA
*
35998816 GGCACGAGCTCGACCATTTGGGTCGT
1 GGCACGAGCTCGACCATTTGGGCCGT
35998842 GGCACGAGCTCGACCATTTGGGCCGT
1 GGCACGAGCTCGACCATTTGGGCCGT
35998868 G
1 G
35998869 TAGGCCGTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (26 bp):
GGCACGAGCTCGACCATTTGGGCCGT
Found at i:35999397 original size:40 final size:38
Alignment explanation
Indices: 35999351--35999453 Score: 120
Period size: 40 Copynumber: 2.7 Consensus size: 38
35999341 TTTTATAGTA
35999351 CCACTTGGTGTGTAGGGTTGGATGGGTCGATTTTATCC
1 CCACTTGGTGTGTAGGGTTGGATGGGTCGATTTTATCC
* * *
35999389 CCATACTTGGTATGTAGGGCTGGGA-AGGTCGATTTTATCC
1 CC--ACTTGGTGTGTAGGG-TTGGATGGGTCGATTTTATCC
*
35999429 CCACATGGTGTGCT-GGGTTGGATGG
1 CCACTTGGTGTG-TAGGGTTGGATGG
35999454 AGATGGTGTG
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
37 4 0.08
38 14 0.26
39 1 0.02
40 30 0.57
41 4 0.08
ACGTcount: A:0.16, C:0.17, G:0.35, T:0.33
Consensus pattern (38 bp):
CCACTTGGTGTGTAGGGTTGGATGGGTCGATTTTATCC
Found at i:36009626 original size:16 final size:16
Alignment explanation
Indices: 36009574--36009628 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 16
36009564 TATTATGTAA
*
36009574 TAATATTAAAAGTGATAT
1 TAATA-TAATAGT-ATAT
*
36009592 TAAT-TAAATATTA-AT
1 TAATAT-AATAGTATAT
36009607 TAATATAATAGTATAT
1 TAATATAATAGTATAT
36009623 TAATAT
1 TAATAT
36009629 GAAATTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 12 0.39
16 11 0.35
17 4 0.13
18 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (16 bp):
TAATATAATAGTATAT
Found at i:36009626 original size:31 final size:33
Alignment explanation
Indices: 36009574--36009641 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 33
36009564 TATTATGTAA
36009574 TAATATTAAAAGTGATATTAAT-TAAATATTAAT
1 TAATATTAAAAGTGATATTAATATAAA-ATTAAT
* *
36009607 TAATA-TAATAGT-ATATTAATATGAAATTAAT
1 TAATATTAAAAGTGATATTAATATAAAATTAAT
36009638 TAAT
1 TAAT
36009642 TTGGGCATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 18 0.56
32 9 0.28
33 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (33 bp):
TAATATTAAAAGTGATATTAATATAAAATTAAT
Found at i:36014474 original size:88 final size:88
Alignment explanation
Indices: 36014325--36014496 Score: 308
Period size: 88 Copynumber: 2.0 Consensus size: 88
36014315 TCATGTGGTA
* *
36014325 TTATCTCATGCATCAAAGGTTATAAACTTACTATTATCATAAACTTATAAGCTAACATAATTCCA
1 TTATCTCATGCATCAAAGGATATAAACTTACTATTATCAAAAACTTATAAGCTAACATAATTCCA
36014390 ACAAACTAACACACAATAAGCAT
66 ACAAACTAACACACAATAAGCAT
*
36014413 TTATCTCATGCATCAAAGGATATAAACTTACTATTATCAAAAACTTATATGCTAACATAATTCCA
1 TTATCTCATGCATCAAAGGATATAAACTTACTATTATCAAAAACTTATAAGCTAACATAATTCCA
*
36014478 ACAAACTAACACATAATAA
66 ACAAACTAACACACAATAA
36014497 ACACTTATGT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 80 1.00
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (88 bp):
TTATCTCATGCATCAAAGGATATAAACTTACTATTATCAAAAACTTATAAGCTAACATAATTCCA
ACAAACTAACACACAATAAGCAT
Found at i:36016324 original size:50 final size:51
Alignment explanation
Indices: 36016205--36016336 Score: 149
Period size: 52 Copynumber: 2.6 Consensus size: 51
36016195 GTTGTGAGAA
* * ** **
36016205 CACATGTGTAGTACTATGTGTAGGCTACTGTGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGG-TTTAGGT
* *
36016257 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTTAGGT
* * *
36016307 CGCATGTGTAGTACTAAGTACTGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
36016337 TACGTACCTG
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 32 0.47
52 36 0.53
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTTAGGT
Found at i:36018560 original size:78 final size:77
Alignment explanation
Indices: 36018467--36018630 Score: 172
Period size: 78 Copynumber: 2.1 Consensus size: 77
36018457 GAATTTAAAC
* ** * * *
36018467 CCGGTATAATACCAGCTCGA-AGCCTGTGGGACTTT-AGCCCGGACATATTTCTAGCACGTAGCC
1 CCGGTATAATACCAGCAC-ATAGCCT-ACGGACTTTAAGCCCGGACATAATTCCAGCACATAGCC
36018530 TAC-GAACCTTAAGT
64 TACAG-ACCTTAAGT
* * *
36018544 CCGGTTATAATTCCAGCACATAGCCTACGGACTTTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGG-TATAATACCAGCACATAGCCTACGGACTTTAAGCCCGGACATAATTCCAGCACATAGCCT
*
36018609 GCAGACCTTAAGT
65 ACAGACCTTAAGT
36018622 CCGGATATA
1 CCGG-TATA
36018631 CTTCATCACT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
77 12 0.17
78 59 0.82
79 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (77 bp):
CCGGTATAATACCAGCACATAGCCTACGGACTTTAAGCCCGGACATAATTCCAGCACATAGCCTA
CAGACCTTAAGT
Found at i:36018562 original size:39 final size:39
Alignment explanation
Indices: 36018505--36018630 Score: 164
Period size: 39 Copynumber: 3.2 Consensus size: 39
36018495 GGACTTTAGC
* * * *
36018505 CCGGACATATTTCTAGCACGTAGCCTACGAACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGAACCTTAAGT
* * *
36018544 CCGGTTATAATTCCAGCACATAGCCTACGGACTTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGAACCTTAAGT
*
36018583 CCGGATATAATTCCAGCACATAGCCTGC-AGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGA-ACCTTAAGT
36018622 CCGGATATA
1 CCGGATATA
36018631 CTTCATCACT
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTACGAACCTTAAGT
Found at i:36020588 original size:49 final size:49
Alignment explanation
Indices: 36020534--36020839 Score: 489
Period size: 49 Copynumber: 6.3 Consensus size: 49
36020524 TTATCGCATT
* *
36020534 TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
*
36020583 TATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ACA
1 TATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
*
36020630 TACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
36020679 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
* *
36020728 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
*
36020777 TATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
36020824 TATACACTTTCACATT
1 TATACACTTTCACATT
36020840 TATTCAAATA
Statistics
Matches: 244, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
47 64 0.26
48 1 0.00
49 178 0.73
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
Found at i:36020691 original size:96 final size:96
Alignment explanation
Indices: 36020523--36020839 Score: 503
Period size: 96 Copynumber: 3.3 Consensus size: 96
36020513 CCCTTCGGGA
* * * *
36020523 CTTATCGCATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
36020588 A-TGTTCACATTCATCACATTGGCCATTCGGC
66 ACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36020619 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
36020683 CACTTTCACATTCATCACATTGGCCATTCGGC
65 CACTTTCACATTCATCACATTGGCCATTCGGC
* *
36020715 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
*
36020780 ACACTTTCACATTCATCACATTGGCCATTAGGC
64 ACACTTTCACATTCATCACATTGGCCATTCGGC
36020813 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36020840 TATTCAAATA
Statistics
Matches: 205, Mismatches: 11, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
95 1 0.00
96 113 0.55
97 1 0.00
98 89 0.43
99 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:36020825 original size:145 final size:143
Alignment explanation
Indices: 36020523--36020839 Score: 485
Period size: 145 Copynumber: 2.2 Consensus size: 143
36020513 CCCTTCGGGA
* * * *
36020523 CTTATCGCATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
* *
36020588 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
66 ATGTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATACACATGTTCACATTCATCACA
*
36020653 TTGGCCATTCGGC
131 TTGGCCATTAGGC
36020666 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
* *
36020731 ACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT-TTCACATTC
64 ACA-TGTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ACATACACA-TGTTCACATTC
36020794 ATCACATTGGCCATTAGGC
125 ATCACATTGGCCATTAGGC
36020813 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36020840 TATTCAAATA
Statistics
Matches: 159, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
143 7 0.04
145 108 0.68
146 1 0.01
147 42 0.26
148 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ATGTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATACACATGTTCACATTCATCACA
TTGGCCATTAGGC
Found at i:36022355 original size:56 final size:56
Alignment explanation
Indices: 36022288--36022463 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
36022278 TATTAGTTTA
*
36022288 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
36022344 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
36022400 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
36022456 TTGCCCAT
1 TTGCCCAT
36022464 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:36036917 original size:17 final size:17
Alignment explanation
Indices: 36036895--36036951 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
36036885 AATTTGAATT
36036895 AAAATTAAAAATATATA
1 AAAATTAAAAATATATA
36036912 AAAATTCAAAAAT-TACTA
1 AAAATT-AAAAATATA-TA
*
36036930 AAATTTATAAAATAATATA
1 AAAATTA-AAAAT-ATATA
36036949 AAA
1 AAA
36036952 TCCTCAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 9 0.26
18 18 0.53
19 5 0.15
20 2 0.06
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAATTAAAAATATATA
Found at i:36037738 original size:27 final size:25
Alignment explanation
Indices: 36037703--36037763 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
36037693 TTTTGAGCAC
36037703 TTTATATTTTTATAAATTTTAATAATT
1 TTTA-ATTTTTATAAATTTT-ATAATT
** *
36037730 TTTGAATTTTTATGGATTTTTTAATT
1 TTT-AATTTTTATAAATTTTATAATT
36037756 TTTAATTT
1 TTTAATTT
36037764 ATAATTTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 5 0.17
26 8 0.27
27 16 0.53
28 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (25 bp):
TTTAATTTTTATAAATTTTATAATT
Found at i:36037740 original size:18 final size:19
Alignment explanation
Indices: 36037719--36037761 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
36037709 TTTTTATAAA
36037719 TTTTAAT-AATTTTTGAAT
1 TTTTAATGAATTTTTGAAT
* *
36037737 TTTT-ATGGATTTTTTAAT
1 TTTTAATGAATTTTTGAAT
36037755 TTTTAAT
1 TTTTAAT
36037762 TTATAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 2 0.10
18 17 0.81
19 2 0.10
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (19 bp):
TTTTAATGAATTTTTGAAT
Found at i:36037757 original size:7 final size:7
Alignment explanation
Indices: 36037747--36037780 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
36037737 TTTTATGGAT
36037747 TTTTTAA
1 TTTTTAA
36037754 TTTTTAA
1 TTTTTAA
*
36037761 TTTATAA
1 TTTTTAA
*
36037768 TTTCTAA
1 TTTTTAA
36037775 TTTTTA
1 TTTTTA
36037781 TAATTATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (7 bp):
TTTTTAA
Found at i:36039892 original size:21 final size:21
Alignment explanation
Indices: 36039866--36039908 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
36039856 GGTTCGCTGT
*
36039866 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
36039887 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
36039908 A
1 A
36039909 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:36039908 original size:16 final size:16
Alignment explanation
Indices: 36039889--36039921 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
36039879 TGTATTGGAT
*
36039889 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
36039905 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
36039921 T
1 T
36039922 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:36039966 original size:45 final size:44
Alignment explanation
Indices: 36039900--36039994 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
36039890 GGATTAGAGG
* *
36039900 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
36039945 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
36039989 TGTAAT
1 TGTAAT
36039995 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:36040177 original size:18 final size:17
Alignment explanation
Indices: 36040156--36040190 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36040146 TTATTATTTA
*
36040156 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
36040174 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
36040191 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:36040184 original size:28 final size:27
Alignment explanation
Indices: 36040114--36040186 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
36040104 TTTATTATCA
*
36040114 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
36040142 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
36040169 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
36040187 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:36041362 original size:18 final size:17
Alignment explanation
Indices: 36041341--36041375 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36041331 TTATTATTAA
36041341 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
36041359 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
36041376 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:36041438 original size:17 final size:16
Alignment explanation
Indices: 36041416--36041462 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
36041406 ACTCAAATCA
36041416 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
36041433 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
36041447 TAAATATATGATTTAA
1 T-AATATATGATTTAA
36041463 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:36041463 original size:17 final size:17
Alignment explanation
Indices: 36041435--36041468 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
36041425 ATTATAACTA
*
36041435 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
36041452 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
36041469 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:36041611 original size:93 final size:92
Alignment explanation
Indices: 36041501--36041695 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
36041491 GATTATAGTT
* * *
36041501 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
36041564 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
36041594 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
36041659 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
36041686 TATGAATTTA
1 TATGAATTTA
36041696 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:36049718 original size:42 final size:42
Alignment explanation
Indices: 36049659--36049742 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
36049649 TAGGGCATTT
36049659 AACCAAGGAATATGCTCTCAAGCCACATGTCGTATAATAGGG
1 AACCAAGGAATATGCTCTCAAGCCACATGTCGTATAATAGGG
36049701 AACCAAGGAATATGCTCTCAAGCCACATGTCGTATAATAGGG
1 AACCAAGGAATATGCTCTCAAGCCACATGTCGTATAATAGGG
36049743 TTACCAGTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (42 bp):
AACCAAGGAATATGCTCTCAAGCCACATGTCGTATAATAGGG
Found at i:36050459 original size:20 final size:20
Alignment explanation
Indices: 36050430--36050474 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
36050420 AACACATATG
* *
36050430 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
36050450 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
36050470 TTCAT
1 TTCAT
36050475 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:36053034 original size:31 final size:31
Alignment explanation
Indices: 36052999--36053057 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
36052989 TTAACGGTAA
* *
36052999 AGTGACTAAAATTGACGACTTATCTAACGAG
1 AGTGACTAAAATTGACAACTCATCTAACGAG
36053030 AGTGACTAAAATTGACAACTCATCTAAC
1 AGTGACTAAAATTGACAACTCATCTAAC
36053058 ATGAATGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (31 bp):
AGTGACTAAAATTGACAACTCATCTAACGAG
Found at i:36053072 original size:31 final size:31
Alignment explanation
Indices: 36053001--36053072 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
36052991 AACGGTAAAG
* * *
36053001 TGACTAAAATTGACGACTTATCTAACGAGAG
1 TGACTAAAATTGACAACTCATCTAACGAGAA
36053032 TGACTAAAATTGACAACTCATCTAAC-ATGAA
1 TGACTAAAATTGACAACTCATCTAACGA-GAA
*
36053063 TGACAAAAAT
1 TGACTAAAAT
36053073 AACAATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (31 bp):
TGACTAAAATTGACAACTCATCTAACGAGAA
Found at i:36053539 original size:12 final size:13
Alignment explanation
Indices: 36053510--36053539 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36053500 TTATTTTCAA
36053510 TAATTTTATGTAT
1 TAATTTTATGTAT
36053523 TAATTTTATGT-T
1 TAATTTTATGTAT
36053535 TAATT
1 TAATT
36053540 GATCTTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TAATTTTATGTAT
Found at i:36057871 original size:33 final size:32
Alignment explanation
Indices: 36057826--36057908 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 32
36057816 ATGCAACATG
**
36057826 ACATGC-TATAACAGACTAGTACGGTAGCAA-TA
1 ACATGCTTATAACAGA-TA-TACAATAGCAATTA
36057858 ACATGCTTATAACAAGTATATACAATAGCAATTA
1 ACATGCTTATAAC-AG-ATATACAATAGCAATTA
*
36057892 TCATGCTTATAACAGAT
1 ACATGCTTATAACAGAT
36057909 CATTACAGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
32 8 0.18
33 17 0.39
34 18 0.41
35 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (32 bp):
ACATGCTTATAACAGATATACAATAGCAATTA
Found at i:36062047 original size:40 final size:40
Alignment explanation
Indices: 36061973--36062050 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
36061963 TACAGTACCT
*
36061973 CTTGATGTGTAGGGTTGGATAGGTTGATTATATCCCCATA
1 CTTGATGTGTAGGGTTGGATAGGTCGATTATATCCCCATA
* * *
36062013 CTTGGTGTGTAGGGTTAGG-TGGGTCGATTTTATCCCCA
1 CTTGATGTGTAGGGTT-GGATAGGTCGATTATATCCCCA
36062051 CATGGTTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.18, C:0.14, G:0.31, T:0.37
Consensus pattern (40 bp):
CTTGATGTGTAGGGTTGGATAGGTCGATTATATCCCCATA
Found at i:36070033 original size:26 final size:27
Alignment explanation
Indices: 36069971--36070034 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
36069961 TTTATCGAGG
*
36069971 TTATTAGTTTACCGATAAATGAATATT
1 TTATTAATTTACCGATAAATGAATATT
* *
36069998 TTATTAATTTATCGATAAATTAATA-T
1 TTATTAATTTACCGATAAATGAATATT
36070024 TTATTAATTTA
1 TTATTAATTTA
36070035 GAGAATATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 12 0.35
27 22 0.65
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (27 bp):
TTATTAATTTACCGATAAATGAATATT
Found at i:36070182 original size:34 final size:33
Alignment explanation
Indices: 36070108--36070186 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 33
36070098 AATGAGTCAA
*
36070108 AGTTAATTGGTTCATGTAACAAAAAAAAGAAGTT
1 AGTTAATTGGTTCATGTAACAAAAAAAAAAAG-T
*
36070142 AATTAATTGGTTCATGTAACCAAAAAGAAAAAAG-
1 AGTTAATTGGTTCATGTAA-CAAAAA-AAAAAAGT
36070176 AGTTAA-TGGTT
1 AGTTAATTGGTT
36070187 TTAAAATCCA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
33 5 0.12
34 23 0.57
35 6 0.15
36 6 0.15
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (33 bp):
AGTTAATTGGTTCATGTAACAAAAAAAAAAAGT
Found at i:36074482 original size:78 final size:78
Alignment explanation
Indices: 36074394--36074550 Score: 287
Period size: 78 Copynumber: 2.0 Consensus size: 78
36074384 ATAAGCAGGA
*
36074394 AAATTGATAAATTAAGGGTAAAATTGGAATATTACAAAATTAACTAAATAAAACTAGGACTAAAT
1 AAATTGATAAATTAAGGGCAAAATTGGAATATTACAAAATTAACTAAATAAAACTAGGACTAAAT
*
36074459 AGGAAATATCTAG
66 AAGAAATATCTAG
*
36074472 AAATTGATAAATTAAGGGCAAAATTGGAATATTGCAAAATTAACTAAATAAAACTAGGACTAAAT
1 AAATTGATAAATTAAGGGCAAAATTGGAATATTACAAAATTAACTAAATAAAACTAGGACTAAAT
36074537 AAGAAATATCTAG
66 AAGAAATATCTAG
36074550 A
1 A
36074551 TTTCTCTTCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.26
Consensus pattern (78 bp):
AAATTGATAAATTAAGGGCAAAATTGGAATATTACAAAATTAACTAAATAAAACTAGGACTAAAT
AAGAAATATCTAG
Found at i:36074520 original size:37 final size:35
Alignment explanation
Indices: 36074393--36074520 Score: 87
Period size: 37 Copynumber: 3.4 Consensus size: 35
36074383 AATAAGCAGG
* *
36074393 AAAATTGATAAATTAAGGGTAAAATTGGAATATTAC
1 AAAATTAATAAATTAAGGGCAAAATTGGAATATT-C
* * * *
36074429 AAAATTAACTAAATAAAACTAGGACTAAATAGGAA-ATATC
1 AAAATTAA-TAAAT--TA--AGGGCAAAATTGGAATAT-TC
*
36074469 TAGAAATTGATAAATTAAGGGCAAAATTGGAATATTGC
1 -A-AAATTAATAAATTAAGGGCAAAATTGGAATATT-C
36074507 AAAATTAACTAAAT
1 AAAATTAA-TAAAT
36074521 AAAACTAGGA
Statistics
Matches: 69, Mismatches: 12, Indels: 21
0.68 0.12 0.21
Matches are distributed among these distances:
36 13 0.19
37 24 0.35
38 3 0.04
39 2 0.03
40 3 0.04
41 18 0.26
42 6 0.09
ACGTcount: A:0.52, C:0.06, G:0.14, T:0.27
Consensus pattern (35 bp):
AAAATTAATAAATTAAGGGCAAAATTGGAATATTC
Found at i:36076193 original size:54 final size:57
Alignment explanation
Indices: 36076062--36076200 Score: 171
Period size: 54 Copynumber: 2.5 Consensus size: 57
36076052 ATTAGGATCT
* * *
36076062 GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCATTGCAGG
1 GAATTTAGCCTGGACTGGTAATCCCGA-CCAAGCTCATTAGAGT-ATTGTCATTACAGG
36076121 GAATTTAGCCTGGACTGGTAATCCCGA-CAATGCTC--TATGAGT-TTGT-ATTACAGG
1 GAATTTAGCCTGGACTGGTAATCCCGACCAA-GCTCATTA-GAGTATTGTCATTACAGG
*
36076175 GGATTTAGCCTGGACTGGTAATCCCG
1 GAATTTAGCCTGGACTGGTAATCCCG
36076201 CTGTAAGGAT
Statistics
Matches: 74, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
54 32 0.43
55 4 0.05
56 2 0.03
57 7 0.09
58 4 0.05
59 25 0.34
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (57 bp):
GAATTTAGCCTGGACTGGTAATCCCGACCAAGCTCATTAGAGTATTGTCATTACAGG
Found at i:36076806 original size:23 final size:23
Alignment explanation
Indices: 36076780--36076824 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
36076770 TGGGTATGTG
*
36076780 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
36076803 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
36076825 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:36077986 original size:26 final size:28
Alignment explanation
Indices: 36077927--36077986 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 28
36077917 CATATACTAT
*
36077927 TAATTATTATATGATCATAACAAAAAAA
1 TAATTATTATATGAACATAACAAAAAAA
36077955 -AA-TATTAT-T-AACATAA-AATAAAAA
1 TAATTATTATATGAACATAACAA-AAAAA
36077979 TAATTATT
1 TAATTATT
36077987 TTATTATTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
23 2 0.07
24 11 0.39
25 3 0.11
26 10 0.36
27 2 0.07
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (28 bp):
TAATTATTATATGAACATAACAAAAAAA
Found at i:36078673 original size:17 final size:17
Alignment explanation
Indices: 36078651--36078706 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
36078641 AATGTTTACT
36078651 ATATTATTATTAT-TTTA
1 ATATTA-TATTATATTTA
36078668 ATATTATATTATATTTA
1 ATATTATATTATATTTA
* *
36078685 ATAATACTTTTATTATTTA
1 ATATTA-TATTA-TATTTA
36078704 ATA
1 ATA
36078707 CATTAGCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 6 0.18
17 15 0.44
18 4 0.12
19 9 0.26
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (17 bp):
ATATTATATTATATTTA
Found at i:36078677 original size:19 final size:19
Alignment explanation
Indices: 36078655--36078706 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
36078645 TTTACTATAT
*
36078655 TATTATTATTTTAATATTA-
1 TATTATTA-TTTAATAATAC
36078674 TATTA-TATTTAATAATAC
1 TATTATTATTTAATAATAC
*
36078692 TTTTATTATTTAATA
1 TATTATTATTTAATA
36078707 CATTAGCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 9 0.31
18 6 0.21
19 14 0.48
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATTATTTAATAATAC
Found at i:36087204 original size:44 final size:44
Alignment explanation
Indices: 36087141--36087225 Score: 161
Period size: 44 Copynumber: 1.9 Consensus size: 44
36087131 CAACTGGACC
*
36087141 ACTCTTTCCATAATTAATTAATATTAATTTATTTAGCCCAAATT
1 ACTCTTTCCATAATTAATTAATAATAATTTATTTAGCCCAAATT
36087185 ACTCTTTCCATAATTAATTAATAATAATTTATTTAGCCCAA
1 ACTCTTTCCATAATTAATTAATAATAATTTATTTAGCCCAA
36087226 GTTAAATTGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.38, C:0.16, G:0.02, T:0.44
Consensus pattern (44 bp):
ACTCTTTCCATAATTAATTAATAATAATTTATTTAGCCCAAATT
Found at i:36089502 original size:15 final size:15
Alignment explanation
Indices: 36089482--36089538 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
36089472 CGATGAATTT
36089482 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
36089497 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
36089512 ATTGAATTTATATTG
1 ATTGAATTTATATTG
36089527 ATTGAA-TTATAT
1 ATTGAATTTATAT
36089539 AATATACATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:36089994 original size:21 final size:21
Alignment explanation
Indices: 36089922--36090017 Score: 111
Period size: 21 Copynumber: 4.5 Consensus size: 21
36089912 AGGCACTTTA
36089922 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
*
36089945 TGTGTCGAATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
*
36089966 TGTGTCGTATCAGGAACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
36089987 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
36090008 TGTGTCGTAT
1 TGTGTCGTAT
36090018 ACTGATCAGG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
21 55 0.87
23 8 0.13
ACGTcount: A:0.16, C:0.22, G:0.27, T:0.35
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:36090002 original size:42 final size:42
Alignment explanation
Indices: 36089909--36090017 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 42
36089899 GGCTTTATCG
* * *
36089909 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGA
1 ATCAGGCACCTCATGTGTCGTA--TCAGGAACCTCGTGTGTCGA
* *
36089953 ATCAGGCACCTCGTGTGTCGTATCAGGAACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGAACCTCGTGTGTCGA
* * * *
36089995 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
36090018 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 36 0.65
44 19 0.35
ACGTcount: A:0.17, C:0.22, G:0.26, T:0.35
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGAACCTCGTGTGTCGA
Found at i:36094319 original size:18 final size:18
Alignment explanation
Indices: 36094296--36094332 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
36094286 GATTAGAGCA
36094296 TATTTTAGTCTTTAAATT
1 TATTTTAGTCTTTAAATT
36094314 TATTTTAGTCTTTAAATT
1 TATTTTAGTCTTTAAATT
36094332 T
1 T
36094333 TACTTCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTTTAGTCTTTAAATT
Found at i:36097799 original size:17 final size:19
Alignment explanation
Indices: 36097767--36097804 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
36097757 ACTTTTAAAA
36097767 ATTAAAAATCATTAAAATT
1 ATTAAAAATCATTAAAATT
36097786 ATTAAAAAT-A-TAAAATT
1 ATTAAAAATCATTAAAATT
36097803 AT
1 AT
36097805 AATCTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 1 0.05
19 9 0.47
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTAAAAATCATTAAAATT
Found at i:36109068 original size:45 final size:45
Alignment explanation
Indices: 36108985--36109070 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
36108975 TTATATGCCT
* * *
36108985 AAAATGAGTAAGACCATAGTTGAAAGATGTTATGGCATCATGATA
1 AAAATGAGTAAGACCATAGCTGAAAAATGCTATGGCATCATGATA
*
36109030 AAAATGAGTAAGATCATAGCTGAAAAATGCTA-GAGCATCAT
1 AAAATGAGTAAGACCATAGCTGAAAAATGCTATG-GCATCAT
36109071 ATGAAAGCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.24
Consensus pattern (45 bp):
AAAATGAGTAAGACCATAGCTGAAAAATGCTATGGCATCATGATA
Found at i:36112023 original size:39 final size:39
Alignment explanation
Indices: 36111981--36112118 Score: 213
Period size: 39 Copynumber: 3.5 Consensus size: 39
36111971 ATTCACTTAT
* * *
36111981 AAGCATATATCACATTACACATATAATCACATAAAATTT
1 AAGCATATATCACAATACTCATATAATCACATAAAATTC
* *
36112020 AAGCATATATCACAATACTCATGTAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAAAATTC
* *
36112059 AAGCATATATCACAATACTTATATAATCACATAATATTC
1 AAGCATATATCACAATACTCATATAATCACATAAAATTC
36112098 AAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
36112119 AAGACATGTT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAAAATTC
Found at i:36114902 original size:26 final size:26
Alignment explanation
Indices: 36114873--36114928 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
36114863 TGGTACAAAT
36114873 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
36114899 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
36114925 TGAT
1 TGAT
36114929 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:36116591 original size:27 final size:26
Alignment explanation
Indices: 36116551--36116691 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 26
36116541 AGGAAACATC
*
36116551 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
36116578 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
36116605 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
36116632 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
36116659 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
36116686 CTGGTG
1 CTGGTG
36116692 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.09
27 89 0.89
28 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:36116633 original size:54 final size:53
Alignment explanation
Indices: 36116551--36116691 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
36116541 AGGAAACATC
36116551 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
36116605 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
36116659 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
36116692 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.09
54 75 0.91
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:36121983 original size:26 final size:26
Alignment explanation
Indices: 36121954--36122061 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
36121944 TGGTACAAAT
36121954 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
36121980 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
36122006 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
36122032 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
36122058 TGAT
1 TGAT
36122062 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:36123742 original size:54 final size:54
Alignment explanation
Indices: 36123660--36123800 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 54
36123650 AGGAAGCGTC
* *
36123660 CTGGTGGCTATGCCACAATTATCTGATCTTGTGGCTCTGCCACTTATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
36123714 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
36123768 CTGGTGGCTCTGCCACAA-TATCTATATCTGGTG
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTG
36123801 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:36123794 original size:32 final size:27
Alignment explanation
Indices: 36123660--36123800 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
36123650 AGGAAGCGTC
* *
36123660 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
* *
36123687 CTTGTGGCTCTGCCACTTATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
* *
36123714 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGTT
36123741 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
*
36123768 CTGGTGGCTCTGCCACA-ATATCTATAT
1 CTGGTGGCTCTGCCACATATATCTGT-T
36123795 CTGGTG
1 CTGGTG
36123801 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 9 0.09
27 88 0.89
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:36132215 original size:47 final size:46
Alignment explanation
Indices: 36132016--36132284 Score: 183
Period size: 47 Copynumber: 5.7 Consensus size: 46
36132006 GGGTTATATT
* * * * *
36132016 GCCGATGCCATCTCCCAGATATGGTTTTACACTGGCTCTCATA-TACGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATACT--GTG
* * * * *
36132065 TGCTGATGCATGTCCCAGACATGTCTTACACTAGTA--CA-ACTCTTA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATACT-GTG
* * * * ** *
36132110 GCCGATGCGTGTCCCAGACACGTCTT-CAACTAGCTA-TCTTTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTAC-ACTGGC-ACTCATACT-GTG
* * *
36132157 GCCGATGCATGTCCCAGACATGTCTTACAGTGGCACTCGT-CTCTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATACTGTG
*
36132202 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACTGTG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATACTGTG
*
36132251 GCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
36132285 GCACAAATCA
Statistics
Matches: 175, Mismatches: 33, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.16
45 4 0.02
46 26 0.15
47 61 0.35
48 33 0.19
49 16 0.09
50 6 0.03
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATACTGTG
Found at i:36132265 original size:94 final size:92
Alignment explanation
Indices: 36132014--36132284 Score: 273
Period size: 94 Copynumber: 2.9 Consensus size: 92
36132004 ATGGGTTATA
* * * * *
36132014 TTGCCGATGCCATCTCCCAGATATGGTTTTACACTGGCTCTCATATACGCGTGCTGATGCATGTC
1 TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CGAG-GCCGATGCATGTC
* *
36132079 CCAGACATGTCTTACACTAGTACAACTCT
64 CCAGACATGTCTTACACTGGCACAACTCT
* * * * * * *
36132108 TAGCCGATG-CGTGTCCCAGACA-CGTCTT-CAACTAGCTATCTTTGTCGAGGCCGATGCATGTC
1 TTGCCGATGCCATGTCCCAGACATGGTCTTAC-ACTGGCTCTC-ATATCGAGGCCGATGCATGTC
* *
36132170 CCAGACATGTCTTACAGTGGCAC-TCGTCT
64 CCAGACATGTCTTACACTGGCACAAC-TCT
* *
36132199 CTGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-CTGTGGCCGAAGCATGT
1 -T-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-GAGGCCGATGCATGT
36132263 CCCAGACATGTCTTACACTGGC
63 CCCAGACATGTCTTACACTGGC
36132285 GCACAAATCA
Statistics
Matches: 142, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
90 1 0.01
91 36 0.25
92 16 0.11
93 20 0.14
94 55 0.39
95 13 0.09
96 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (92 bp):
TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCATGTCCC
AGACATGTCTTACACTGGCACAACTCT
Found at i:36136022 original size:42 final size:43
Alignment explanation
Indices: 36135943--36136093 Score: 146
Period size: 42 Copynumber: 3.5 Consensus size: 43
36135933 TCCTGGACGT
* * * *
36135943 GGTCTTACATGAAATTCAG-TATCGATGCCTCTGTCCCAAATAG
1 GGTCTTACACGAAATTCAGATA-CGATGCCTATGTCCCAGATAC
* * *
36135986 GGTCTTACACGAAA-TCAGATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATTCAGATACGATGCCTATGTCCCAGATAC
* * *
36136028 GGTCTTACACATAAATCTCAAAT-CGAGGCCTATGTCCCAGATAC
1 GGTCTTACAC-GAAAT-TCAGATACGATGCCTATGTCCCAGATAC
*
36136072 GGTCTTACACGATATCTCAGAT
1 GGTCTTACACGAAAT-TCAGAT
36136094 CGAGGTCAAC
Statistics
Matches: 89, Mismatches: 15, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
42 30 0.34
43 27 0.30
44 27 0.30
45 5 0.06
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGAAATTCAGATACGATGCCTATGTCCCAGATAC
Found at i:36139928 original size:31 final size:31
Alignment explanation
Indices: 36139893--36139954 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
36139883 CATTAACGAG
36139893 CAATTCTTCCAGACTTTATCAACCAAGACAC
1 CAATTCTTCCAGACTTTATCAACCAAGACAC
*
36139924 CAATTCTTGCAGACTTTATCAACCAAGACAC
1 CAATTCTTCCAGACTTTATCAACCAAGACAC
36139955 TTTTGCCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.31, G:0.08, T:0.26
Consensus pattern (31 bp):
CAATTCTTCCAGACTTTATCAACCAAGACAC
Found at i:36142939 original size:42 final size:43
Alignment explanation
Indices: 36142842--36142967 Score: 125
Period size: 42 Copynumber: 3.0 Consensus size: 43
36142832 GTACAATGTT
* * *
36142842 GATGTCCCAAACGTGGTCTTACATGAAATTCAGTATCGATGCC
1 GATGTCCCAGACATGGTCTTACACGAAATTCAGTATCGATGCC
** * * *
36142885 TCTATCCTAGACAAGGTCTTACACGAAA-TCAG-ATACGATGCC
1 GATGTCCCAGACATGGTCTTACACGAAATTCAGTAT-CGATGCC
36142927 GATGTCCCAGACATGGTCTTACAC-AATATCTCAG-ATCGATG
1 GATGTCCCAGACATGGTCTTACACGAA-AT-TCAGTATCGATG
36142968 TCAACGTTCC
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
41 4 0.06
42 31 0.47
43 25 0.38
44 6 0.09
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
GATGTCCCAGACATGGTCTTACACGAAATTCAGTATCGATGCC
Found at i:36146021 original size:43 final size:43
Alignment explanation
Indices: 36145874--36146021 Score: 126
Period size: 43 Copynumber: 3.4 Consensus size: 43
36145864 TGTGATTTCG
* *
36145874 TGTAAGACCACATCTGGGAC-GTTGGCATCGAT-TTGAGATTTACA
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGATATT-TGA-TTACA
** * * * *
36145918 TGTAAGACCGTGTCTGAGACA-TCAGCATC-ATATTTGATTTCG
1 TGTAAGACCACGTCTGGGACAGT-GGCATCGATATTTGATTACA
* *
36145960 TGTAAGACC-CTGTTTGGGACAGTGGTATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATTACA
36146003 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
36146022 TGTTGGCATT
Statistics
Matches: 81, Mismatches: 16, Indels: 15
0.72 0.14 0.13
Matches are distributed among these distances:
42 24 0.30
43 33 0.41
44 24 0.30
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTACA
Found at i:36153646 original size:46 final size:46
Alignment explanation
Indices: 36153533--36153657 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
36153523 GCCACATTAT
* *
36153533 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGGGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGAC
* * * * *
36153581 GAGAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCTCGAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGAC
36153627 GTAG-GCCAGTGTAAGACATGTCTGGGACATG
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATG
36153658 TATTGGCTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 37 0.55
47 16 0.24
48 14 0.21
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.21
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGAC
Found at i:36153672 original size:46 final size:44
Alignment explanation
Indices: 36153537--36153708 Score: 130
Period size: 46 Copynumber: 3.7 Consensus size: 44
36153527 CATTATGAGA
* * * * *
36153537 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGGGACGAG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA-TAG
* *
36153584 AGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCTCGAGATGTAG
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA--TAG
* * * *
36153631 GCCAGTGTAAGACATGTCTGGGACATGTATTGG-CTATGAGATAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATAG
** *
36153675 TTCAGTGTAAGTCCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAG-ACATGTCTGGGACAT-GCATCG
36153709 ACACGGATAT
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
44 11 0.11
45 16 0.16
46 48 0.48
47 16 0.16
48 10 0.10
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAG
Found at i:36161301 original size:46 final size:46
Alignment explanation
Indices: 36161233--36161541 Score: 325
Period size: 46 Copynumber: 6.7 Consensus size: 46
36161223 TTTGTGTGCT
*
36161233 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTC
*
36161279 TGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGTC
** * *
36161323 AGTGTAAGACCATGTCTGGGACATAGCATCAACAT-G-TATAG-AAGTGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-GTAA--GTC
** *
36161371 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATG-AGAG-C
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGTC
*
36161418 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTC
*
36161465 TGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGTC
36161509 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
36161542 ATTATACCCT
Statistics
Matches: 226, Mismatches: 18, Indels: 37
0.80 0.06 0.13
Matches are distributed among these distances:
44 22 0.10
45 34 0.15
46 102 0.45
47 18 0.08
48 44 0.19
49 3 0.01
50 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTC
Found at i:36164023 original size:108 final size:110
Alignment explanation
Indices: 36163824--36164024 Score: 275
Period size: 108 Copynumber: 1.8 Consensus size: 110
36163814 TTTAAGGATA
* * *
36163824 CCATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCCAAGGCAAGGATGCCATGTAATA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCCAAGGCAAGGATACCATGTAAGA
* *
36163889 CCATGTCAAGACGTGGCATTGATAAGTTACTATAAGGAAAACATC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAACATC
* *
36163934 CCATGTAAGACCATGCCAAGGTATGG-AATTGG--AGAG-TTCATAAGGCAAGGATACCATGTAA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAG-GTTTC-CAAGGCAAGGATACCATGTAA
* *
36163995 GACCATGTCGAGACATGGCAATGGTAAGTT
64 GACCATGTCAAGACATGGCAATGATAAGTT
36164025 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
107 5 0.06
108 45 0.56
109 6 0.08
110 24 0.30
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCCAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAACATC
Done.