Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 114 of 276
Found at i:36164281 original size:16 final size:16
Alignment explanation
Indices: 36164260--36164290 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36164250 ATAAATTTGA
36164260 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
36164276 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
36164291 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:36178292 original size:40 final size:40
Alignment explanation
Indices: 36178215--36178472 Score: 344
Period size: 40 Copynumber: 6.5 Consensus size: 40
36178205 AAACCAAGTA
* * * *
36178215 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
36178254 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36178294 CCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36178334 CCTTCGGGACTTAGCCCGAAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36178374 CCTTCGGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
36178414 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
36178454 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36178473 TTATCATCCG
Statistics
Matches: 199, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.07
40 185 0.93
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36179753 original size:29 final size:30
Alignment explanation
Indices: 36179711--36179769 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
36179701 TATTCGGCCA
36179711 AGTTCAACAACATGAGAAC-TTTTCTTTTT
1 AGTTCAACAACATGAGAACTTTTTCTTTTT
* *
36179740 AGTTGAACAACATGAGTACTTTTTCTTTTT
1 AGTTCAACAACATGAGAACTTTTTCTTTTT
36179770 TTTTTCTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (30 bp):
AGTTCAACAACATGAGAACTTTTTCTTTTT
Found at i:36187190 original size:42 final size:42
Alignment explanation
Indices: 36187138--36187939 Score: 1415
Period size: 42 Copynumber: 19.1 Consensus size: 42
36187128 CTAAGTTCGG
* * *
36187138 ATATAGTACCAGCACTAAGCATGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187180 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187222 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187264 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187306 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187348 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187390 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187432 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187474 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187516 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187558 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187600 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187642 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187684 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187726 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187768 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187810 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
36187852 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187894 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
36187936 ATAT
1 ATAT
36187940 TATATCGAGA
Statistics
Matches: 721, Mismatches: 39, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 721 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:36187247 original size:84 final size:84
Alignment explanation
Indices: 36187138--36187939 Score: 1577
Period size: 84 Copynumber: 9.5 Consensus size: 84
36187128 CTAAGTTCGG
* * *
36187138 ATATAGTACCAGCACTAAGCATGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187203 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187222 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187287 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187306 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187371 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187390 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187455 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187474 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187539 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187558 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187623 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187642 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187707 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187726 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187791 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187810 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
36187875 CGGGATTTAACCTGGATAT
66 CGGGATTTAACCTGGATAT
36187894 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
36187940 TATATCGAGA
Statistics
Matches: 715, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 715 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (84 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACGAAGCCTG
CGGGATTTAACCTGGATAT
Found at i:36194428 original size:40 final size:40
Alignment explanation
Indices: 36194391--36195271 Score: 1717
Period size: 40 Copynumber: 22.0 Consensus size: 40
36194381 CAGATATAGT
* * *
36194391 ACCAGCACTAAGCCCGCGGGATTTAACCCGGATATATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGG--ATATATATG
36194433 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194473 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194513 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194553 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194593 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194633 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194673 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194713 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194753 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194793 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194833 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194873 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194913 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194953 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36194993 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36195033 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36195073 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36195113 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36195153 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36195193 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
36195233 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
36195272 TATATCGAGA
Statistics
Matches: 836, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
40 807 0.97
42 29 0.03
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (40 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATG
Found at i:36199971 original size:15 final size:15
Alignment explanation
Indices: 36199951--36200006 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
36199941 GTATCTTGGG
36199951 TTTCTTTATTCTTGA
1 TTTCTTTATTCTTGA
*
36199966 TTTCTTTATTCTGGA
1 TTTCTTTATTCTTGA
*
36199981 TTTCTCTA-TCTTGGA
1 TTTCTTTATTCTT-GA
36199996 TTTCTTTATTC
1 TTTCTTTATTC
36200007 GATTTCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 3 0.09
15 30 0.86
16 2 0.06
ACGTcount: A:0.12, C:0.16, G:0.09, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTTGA
Found at i:36202456 original size:46 final size:46
Alignment explanation
Indices: 36202403--36202576 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
36202393 TGGTTGAGCA
* *
36202403 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGATTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGATCG
* * * *
36202449 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGA-T---CG
* * * * *
36202496 TCTGAGCTCGTTGAGTTGAGTACGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGATCG
* *
36202542 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
36202577 GGGCGGGTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
46 61 0.59
47 25 0.24
49 1 0.01
50 7 0.07
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGATCG
Found at i:36202559 original size:93 final size:93
Alignment explanation
Indices: 36202400--36202570 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
36202390 GGATGGTTGA
* ** *
36202400 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGATTGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
36202465 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * * *
36202493 GCATCTGAGCTCGTTGAGTTGAGTACGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
36202558 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36202571 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:36210827 original size:16 final size:16
Alignment explanation
Indices: 36210806--36210837 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36210796 AAGGCAGTAA
36210806 GGTATTCGGTGTAGGG
1 GGTATTCGGTGTAGGG
36210822 GGTATTCGGTGTAGGG
1 GGTATTCGGTGTAGGG
36210838 AGCAAAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.50, T:0.31
Consensus pattern (16 bp):
GGTATTCGGTGTAGGG
Found at i:36219813 original size:40 final size:40
Alignment explanation
Indices: 36219609--36219813 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
36219599 CGGAATTTAA
** *
36219609 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36219649 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36219689 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * * *
36219729 CCAGATTTAGTAACTCGTACAAATGCCTTC-GAATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36219769 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36219809 CCGGA
1 CCGGA
36219814 CATCATTCAA
Statistics
Matches: 141, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.03
40 128 0.91
41 9 0.06
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36220750 original size:80 final size:80
Alignment explanation
Indices: 36220617--36220775 Score: 300
Period size: 80 Copynumber: 2.0 Consensus size: 80
36220607 AAAGAAGATT
*
36220617 CAAGAATCATCAATCTACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCAATGCCAT
1 CAAGAATCATCAATCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCAATGCCAT
36220682 TAACACAAAATCCAG
66 TAACACAAAATCCAG
*
36220697 CAAGAATCATCAATCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCAATGGCAT
1 CAAGAATCATCAATCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCAATGCCAT
36220762 TAACACAAAATCCA
66 TAACACAAAATCCA
36220776 CCTAGGCCGA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.25
Consensus pattern (80 bp):
CAAGAATCATCAATCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCAATGCCAT
TAACACAAAATCCAG
Found at i:36222110 original size:40 final size:40
Alignment explanation
Indices: 36222066--36222254 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
36222056 GCTACTAGCT
*
36222066 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
36222106 CAAATGCCTTCCGGACCTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
36222146 CGAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
36222186 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
36222226 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
36222255 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:36229068 original size:32 final size:33
Alignment explanation
Indices: 36229023--36229085 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
36229013 GCAACGGGTT
36229023 CTGGGCCGAAG-CCCTTTTCAGA-ATACAGTAAA
1 CTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAAA
36229055 CTGGGCC-ATAGCCCCTTTTCAGATAACAGTA
1 CTGGGCCGA-AGCCCCTTTTCAGATAACAGTA
36229086 TGGCCCGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 1 0.04
32 9 0.32
33 17 0.61
34 1 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (33 bp):
CTGGGCCGAAGCCCCTTTTCAGATAACAGTAAA
Found at i:36242414 original size:21 final size:22
Alignment explanation
Indices: 36242385--36242425 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36242375 TACAAATGTT
36242385 ATTTATCTAACAACAAACATGC
1 ATTTATCTAACAACAAACATGC
* *
36242407 ATTT-TCTATCATCAAACAT
1 ATTTATCTAACAACAAACAT
36242426 CAAAATACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.34
Consensus pattern (22 bp):
ATTTATCTAACAACAAACATGC
Found at i:36243639 original size:18 final size:18
Alignment explanation
Indices: 36243616--36243654 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
36243606 AAAATGATTC
36243616 AATTAATGAA-TTTAATAT
1 AATTAATGAAGTTTAAT-T
*
36243634 AATTAATTAAGTTTAATT
1 AATTAATGAAGTTTAATT
36243652 AAT
1 AAT
36243655 AACTAAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (18 bp):
AATTAATGAAGTTTAATT
Found at i:36246568 original size:43 final size:42
Alignment explanation
Indices: 36246520--36246636 Score: 189
Period size: 43 Copynumber: 2.7 Consensus size: 42
36246510 GTGTGAATTC
*
36246520 GTGTAAGACCATGTCTAGGACATTGGTATCGAAGTGATAAAAT
1 GTGTAAGACCATGTCT-GGACATTGGCATCGAAGTGATAAAAT
*
36246563 GTGTAAGACCATGTTTGGGACATTGGCATCGAAGTGATAAAAT
1 GTGTAAGACCATGTCT-GGACATTGGCATCGAAGTGATAAAAT
36246606 GTGTAAGACCATGTCTGGAACATTGGCATCG
1 GTGTAAGACCATGTCTGG-ACATTGGCATCG
36246637 TATATGACTC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 2 0.03
43 67 0.97
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGACATTGGCATCGAAGTGATAAAAT
Found at i:36248631 original size:20 final size:20
Alignment explanation
Indices: 36248603--36248640 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36248593 AATTAATCTT
36248603 GTTTAATTA-ACTTAATTTAG
1 GTTTAATTATAC-TAATTTAG
*
36248623 GTTTTATTATACTAATTT
1 GTTTAATTATACTAATTT
36248641 TACTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.55
Consensus pattern (20 bp):
GTTTAATTATACTAATTTAG
Found at i:36251600 original size:27 final size:27
Alignment explanation
Indices: 36251581--36251965 Score: 437
Period size: 27 Copynumber: 14.2 Consensus size: 27
36251571 ATTACCAAAG
**
36251581 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
36251608 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
36251635 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
36251662 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
36251689 TACTCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
36251716 TACCCTCGATTTATAGAATTATACTGTTT
1 TACCCTCGATTTACAGAA-T-TACCATTT
* *
36251745 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
36251772 TACCCTCGGTTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
36251799 CACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
36251826 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
36251853 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * **
36251880 TACACTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
36251907 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
36251934 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
36251961 TACCC
1 TACCC
36251966 CTAGGGTGTT
Statistics
Matches: 312, Mismatches: 44, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
27 285 0.91
28 2 0.01
29 25 0.08
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:36251671 original size:81 final size:81
Alignment explanation
Indices: 36251581--36251965 Score: 482
Period size: 81 Copynumber: 4.7 Consensus size: 81
36251571 ATTACCAAAG
* **
36251581 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATTATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
36251646 TACAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * * * *
36251662 TACCCTCGATTTATAGAATTACTATTTTACTCTTGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* * *
36251727 TATAGAATTATACTGTTT
66 TACA-AAAT-TACCGTTT
* * * ** *
36251745 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGGTTTACAAAATTACTGTTTCACCCTCGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
36251810 TACAAAATTACCATTT
66 TACAAAATTACCGTTT
* * * * *
36251826 TACCCTCGATTTATAAAATTACTATTTTACCCTCAATTTACAGAATTACCATTTTACACTTGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
36251891 TACAAAATTACTGTTT
66 TACAAAATTACCGTTT
* * * * *
36251907 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCC
36251966 CTAGGGTGTT
Statistics
Matches: 255, Mismatches: 47, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
81 184 0.72
82 5 0.02
83 66 0.26
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:36251688 original size:54 final size:54
Alignment explanation
Indices: 36251554--36251965 Score: 527
Period size: 54 Copynumber: 7.6 Consensus size: 54
36251544 ATTACTGAAA
* * * *** *
36251554 TACCCTCGAATTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
36251608 TACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
36251662 TACCCTCGATTTATAGAATTACTATTTTACTCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
36251716 TACCCTCGATTTATAGAATTATACTGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATA-AAAT-TACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * * *
36251772 TACCCTCGGTTTACAAAATTACTGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* *
36251826 TACCCTCGATTTATAAAATTACTATTTTACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
36251880 TACACTTGATTTACAAAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
*
36251934 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACTATTTTACCC
36251966 CTAGGGTGTT
Statistics
Matches: 311, Mismatches: 45, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
54 261 0.84
55 5 0.02
56 45 0.14
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:36252245 original size:27 final size:26
Alignment explanation
Indices: 36252201--36252252 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36252191 CTCGTTGCAA
*
36252201 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
36252228 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
36252253 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:36252537 original size:25 final size:25
Alignment explanation
Indices: 36252509--36252572 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
36252499 CATTCACATT
* *
36252509 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
36252534 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
36252559 CTGATTCTGATTCT
1 CTGATTCTGATTCT
36252573 CATTTTGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:36252545 original size:6 final size:6
Alignment explanation
Indices: 36252506--36252593 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
36252496 TTGCATTCAC
* * *
36252506 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
36252556 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
36252594 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:36255983 original size:40 final size:39
Alignment explanation
Indices: 36255885--36256147 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
36255875 TCCTCGTTCA
* * * *
36255885 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
36255924 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36255963 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36256003 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
36256043 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
36256083 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
36256124 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36256148 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:36256107 original size:120 final size:119
Alignment explanation
Indices: 36255885--36256147 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
36255875 TCCTCGTTCA
* * *
36255885 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
36255950 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
36256003 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
36256068 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
36256124 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
36256148 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:36256156 original size:41 final size:41
Alignment explanation
Indices: 36256079--36256156 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36256069 TTTGTATCTC
* * *
36256079 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36256120 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36256157 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36263885 original size:40 final size:40
Alignment explanation
Indices: 36263824--36264069 Score: 325
Period size: 40 Copynumber: 6.2 Consensus size: 40
36263814 CGGAATTTAG
* * * *
36263824 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
36263864 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
36263904 CCGGAT-ATATAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
36263943 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
36263983 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
36264023 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
36264063 CCGGATA
1 CCGGATA
36264070 TCATTCAAAT
Statistics
Matches: 185, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 36 0.19
40 149 0.81
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:36266086 original size:15 final size:15
Alignment explanation
Indices: 36266066--36266095 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36266056 TCCGACTAGG
*
36266066 GTCACATTTTGGGCT
1 GTCACAATTTGGGCT
36266081 GTCACAATTTGGGCT
1 GTCACAATTTGGGCT
36266096 AAAAGGGCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.37
Consensus pattern (15 bp):
GTCACAATTTGGGCT
Found at i:36266249 original size:27 final size:27
Alignment explanation
Indices: 36266203--36266504 Score: 381
Period size: 27 Copynumber: 11.2 Consensus size: 27
36266193 ATTACTAAAA
* * * ***
36266203 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
*
36266230 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
36266257 TACCCTCGA-TTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
**
36266283 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
36266310 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
36266337 TACCCTCGATTCACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
36266364 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
36266391 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
36266418 TACCCTCGATTTATAGGATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
36266445 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
36266472 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
36266499 TACCCT
1 TACCCT
36266505 TAGGGTGTTA
Statistics
Matches: 241, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.10
27 218 0.90
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:36266783 original size:27 final size:26
Alignment explanation
Indices: 36266739--36266790 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36266729 CTCGCTGCAA
*
36266739 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
36266766 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
36266791 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:36266858 original size:26 final size:27
Alignment explanation
Indices: 36266829--36266888 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
36266819 CCACATATAT
*
36266829 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
36266855 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
36266882 ATATCTG
1 ATATCTG
36266889 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:36267042 original size:31 final size:31
Alignment explanation
Indices: 36267007--36267116 Score: 118
Period size: 31 Copynumber: 3.5 Consensus size: 31
36266997 TTGTATTCGC
36267007 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
36267038 ATTCTGATTTTGATTTTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
36267069 ATTCTGATTCTGATTCTAATT--CTG-TCACCTG
1 ATTCTGATTTTGATTCT-GTTACCTGAT-A-CTG
36267100 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
36267117 CATTTTGATT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
29 1 0.02
30 2 0.03
31 61 0.94
32 1 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:36267046 original size:6 final size:6
Alignment explanation
Indices: 36267007--36267137 Score: 72
Period size: 6 Copynumber: 21.3 Consensus size: 6
36266997 TTGTATTCGC
* * * *
36267007 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
36267056 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTA ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
36267106 ATTTTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
36267138 AATGTTTCTT
Statistics
Matches: 94, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
5 5 0.05
6 78 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:36267070 original size:37 final size:37
Alignment explanation
Indices: 36267029--36267128 Score: 137
Period size: 37 Copynumber: 2.7 Consensus size: 37
36267019 ATTCTGTTAC
* *
36267029 CTGATACTGATTCTGATTTTGATTTTGTCACCTAATT
1 CTGATTCTGATTCTGATTTTGATTCTGTCACCTAATT
* * *
36267066 CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTTTGATTCTGTCACCTAATT
* *
36267103 CTGATTTTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTTTGATTCT
36267129 AGTTCTGATA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTTTGATTCTGTCACCTAATT
Found at i:36268571 original size:42 final size:42
Alignment explanation
Indices: 36268511--36268674 Score: 179
Period size: 42 Copynumber: 3.9 Consensus size: 42
36268501 TTAGGGTTAC
* *
36268511 TGAGATTACGTGTCAGACCATATCTGGGATATGGCATCTATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
* * * *
36268553 TGAGATTTCGTATAAGACCAAATCTGGGATATGCCATCAATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
* * *
36268595 TGAGACTT-CGTGTAAGACCATGA-CTGGGCTATTGCAATCGATA
1 TGAGA-TTACGTGTAAGACCAT-ATCTGGGATATGGC-ATCAATA
* * *
36268638 CGAGATTACATGTAAGACCATATCTGGGATATAGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
36268675 TGTTATGGTA
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
42 66 0.65
43 35 0.35
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:36270254 original size:31 final size:32
Alignment explanation
Indices: 36270197--36270256 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
36270187 ACGAAGTCAC
* *
36270197 CAGATATAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATAGATATTGTGGCGAAGCCACCAAAA
*
36270229 CAGATATATATA-TGTGGCGAAGCCACCA
1 CAGATATAGATATTGTGGCGAAGCCACCA
36270257 GATTGCAGCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 14 0.56
32 11 0.44
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAAAA
Found at i:36271771 original size:40 final size:40
Alignment explanation
Indices: 36271687--36271871 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
36271677 TCGAATGATG
* *
36271687 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
36271726 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36271767 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36271806 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
36271845 AACCGGGCTATGTCCTGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36271872 AACGAGTTGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:36271826 original size:79 final size:81
Alignment explanation
Indices: 36271687--36271869 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
36271677 TCGAATGATG
* * *
36271687 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATT
36271751 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
36271766 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCAAAGGCA
36271828 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
36271846 ACCGGGCTATGTCCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36271870 TGAACGAGTT
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATT
TGTGCGAGTTACTATA
Found at i:36271893 original size:79 final size:79
Alignment explanation
Indices: 36271743--36271894 Score: 200
Period size: 79 Copynumber: 1.9 Consensus size: 79
36271733 CTAAGATCCG
* **
36271743 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
36271808 CGGGTTAAGTCCCA
66 CGGGTTAAGTCCCA
* * * * *
36271822 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCTGAAGGCATTTGAACGAGTTGCTATA
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTACTAAA
36271886 TCC-GGTTAA
64 TCCGGGTTAA
36271895 ATTCCGAAGG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 2 0.03
79 36 0.57
80 25 0.40
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAGTCCCA
Found at i:36277390 original size:40 final size:40
Alignment explanation
Indices: 36277299--36277521 Score: 193
Period size: 40 Copynumber: 5.6 Consensus size: 40
36277289 TCCTCGTTCA
* * * * *
36277299 AATGCCTTCGGGACATAGCCC-CATTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGA-TTTAATAACTCGCACG
* * *
36277338 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36277378 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
36277418 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * ** *
36277458 AAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCACG
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
*
36277499 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36277522 CAGCATTCAA
Statistics
Matches: 152, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 33 0.22
40 109 0.72
41 10 0.07
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36292416 original size:12 final size:11
Alignment explanation
Indices: 36292371--36292425 Score: 58
Period size: 12 Copynumber: 4.8 Consensus size: 11
36292361 AGATAAATAT
*
36292371 TATTTTATTAA
1 TATTTTATTTA
*
36292382 TATTTTGAATTGA
1 TATTTT--ATTTA
36292395 TA-TTTATTTA
1 TATTTTATTTA
36292405 TATTTATATTTA
1 TATTT-TATTTA
36292417 TATTTTATT
1 TATTTTATT
36292426 AATTTTTACT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
10 6 0.16
11 12 0.32
12 14 0.37
13 6 0.16
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (11 bp):
TATTTTATTTA
Found at i:36292423 original size:23 final size:23
Alignment explanation
Indices: 36292371--36292433 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
36292361 AGATAAATAT
36292371 TATTTTATTAATATTTTGAATTGA
1 TATTTTATTAATATTTT-AATTGA
* *
36292395 TA-TTTATTTATA-TTTATATTTA
1 TATTTTATTAATATTTTA-ATTGA
36292417 TATTTTATTAAT-TTTTA
1 TATTTTATTAATATTTTA
36292434 CTTAGCATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 1 0.03
22 9 0.27
23 21 0.64
24 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (23 bp):
TATTTTATTAATATTTTAATTGA
Found at i:36293356 original size:28 final size:30
Alignment explanation
Indices: 36293299--36293359 Score: 83
Period size: 28 Copynumber: 2.1 Consensus size: 30
36293289 ACTTATTTTA
*
36293299 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
36293329 TTGTTAA-TTTATT-TTATTTTAGAA-ACAT
1 TTGTTAATTTTATTATTATTTTA-AAGACAT
36293357 TTG
1 TTG
36293360 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 15 0.52
29 7 0.24
30 7 0.24
ACGTcount: A:0.30, C:0.03, G:0.10, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:36293511 original size:12 final size:12
Alignment explanation
Indices: 36293481--36293513 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
36293471 TATATATTTT
36293481 AAAATT-ATATA
1 AAAATTAATATA
36293492 AAAA-TAATATA
1 AAAATTAATATA
36293503 AAAATTAATAT
1 AAAATTAATAT
36293514 GGGCGGGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:36296432 original size:43 final size:43
Alignment explanation
Indices: 36296284--36296432 Score: 119
Period size: 42 Copynumber: 3.5 Consensus size: 43
36296274 AGCTCCTACA
* * * * * *
36296284 ATGCC-ATATCCCAGATATGCTCTTACATGTTATCACATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAACG
* * * * *
36296326 ATGGCAATAG-CTCAG-CTATGGT-TTACACGAAATCAAATAACG
1 ATGCCAAT-GTCCCAGAC-ATGGTCTTACATGTAATCACATAACG
* * *
36296368 AT-TCAATGTCTCAAACATGGTCTTACATGTAATCACATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAACG
36296410 ATGCCAATGTCCCAGACATGGTC
1 ATGCCAATGTCCCAGACATGGTC
36296433 GTACGCATAA
Statistics
Matches: 81, Mismatches: 19, Indels: 13
0.72 0.17 0.12
Matches are distributed among these distances:
40 1 0.01
41 13 0.16
42 40 0.49
43 27 0.33
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAACG
Found at i:36296444 original size:43 final size:42
Alignment explanation
Indices: 36296356--36296448 Score: 105
Period size: 43 Copynumber: 2.2 Consensus size: 42
36296346 GTTTACACGA
* * * * **
36296356 AATCAAATAACGATTCAATGTCTCAAACATGGTCTTACATGT
1 AATCACATAACGATCCAATGTCCCAAACATGGTCGTACACAT
* *
36296398 AATCACATAACGATGCCAATGTCCCAGACATGGTCGTACGCAT
1 AATCACATAACGAT-CCAATGTCCCAAACATGGTCGTACACAT
36296441 AATCACAT
1 AATCACAT
36296449 CTCGTTAATC
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 13 0.31
43 29 0.69
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.26
Consensus pattern (42 bp):
AATCACATAACGATCCAATGTCCCAAACATGGTCGTACACAT
Found at i:36303048 original size:17 final size:18
Alignment explanation
Indices: 36303028--36303061 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36303018 GAAAAATTAG
36303028 TGTGA-GGACAAAAGCAT
1 TGTGAGGGACAAAAGCAT
*
36303045 TGTGAGGGGCAAAAGCA
1 TGTGAGGGACAAAAGCA
36303062 AAGTGAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.38, C:0.12, G:0.35, T:0.15
Consensus pattern (18 bp):
TGTGAGGGACAAAAGCAT
Found at i:36309383 original size:13 final size:13
Alignment explanation
Indices: 36309365--36309389 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36309355 AATCACAAAT
36309365 AAATACACATATC
1 AAATACACATATC
36309378 AAATACACATAT
1 AAATACACATAT
36309390 TTTTTTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:36315725 original size:164 final size:164
Alignment explanation
Indices: 36315455--36315782 Score: 640
Period size: 164 Copynumber: 2.0 Consensus size: 164
36315445 AAACATGTCA
36315455 CCAACATGTTGTGTTAGTGATGTATGGTAAGGAAAATAAAATATTAAGCATGATAATTAAAATAA
1 CCAACATGTTGTGTTAGTGATGTATGGTAAGGAAAATAAAATATTAAGCATGATAATTAAAATAA
36315520 ATTAAAGAAAGGAATTAAACAATGAAAAGGAAGGGTGATG-AAAAAAAATGGTCTCATCCATACC
66 ATTAAAGAAAGGAATTAAACAATGAAAAGGAAGGGTGATGAAAAAAAAATGGTCTCATCCATACC
36315584 CCCCCCTTGTTGCCGTGAGTTGAGGAAAGAAAAC
131 CCCCCCTTGTTGCCGTGAGTTGAGGAAAGAAAAC
36315618 CCAACATGTTGTGTTAGTGATGTATGGTAAGGAAAAATAAAATATTAAGCATGATAATTAAAATA
1 CCAACATGTTGTGTTAGTGATGTATGGTAAGG-AAAATAAAATATTAAGCATGATAATTAAAATA
36315683 AATTAAAGAAAGGAATTAAACAATGAAAAGGAAGGGTGATGAAAAAAAAATGGTCTCATCCATAC
65 AATTAAAGAAAGGAATTAAACAATGAAAAGGAAGGGTGATGAAAAAAAAATGGTCTCATCCATAC
36315748 CCCCCCCTTGTTGCCGTGAGTTGAGGAAAGAAAAC
130 CCCCCCCTTGTTGCCGTGAGTTGAGGAAAGAAAAC
36315783 AAAAAAAAAA
Statistics
Matches: 163, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
163 32 0.20
164 73 0.45
165 58 0.36
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (164 bp):
CCAACATGTTGTGTTAGTGATGTATGGTAAGGAAAATAAAATATTAAGCATGATAATTAAAATAA
ATTAAAGAAAGGAATTAAACAATGAAAAGGAAGGGTGATGAAAAAAAAATGGTCTCATCCATACC
CCCCCCTTGTTGCCGTGAGTTGAGGAAAGAAAAC
Found at i:36317480 original size:27 final size:27
Alignment explanation
Indices: 36317449--36317626 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36317439 TAAATTGTAC
36317449 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36317476 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36317502 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36317530 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36317558 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36317585 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36317612 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36317627 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36317563 original size:82 final size:81
Alignment explanation
Indices: 36317450--36317605 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36317440 AAATTGTACA
* *
36317450 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36317514 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36317531 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36317596 TGCGAGTTGA
65 TGCGAATTGA
36317606 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36317617 original size:82 final size:81
Alignment explanation
Indices: 36317446--36317626 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36317436 GATTAAATTG
* *
36317446 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36317511 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36317527 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36317591 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36317609 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36317627 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36317637 original size:27 final size:27
Alignment explanation
Indices: 36317531--36317637 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
36317521 TGACCATGCG
* * * *
36317531 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
36317559 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
36317586 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
36317613 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
36317638 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:36319609 original size:300 final size:300
Alignment explanation
Indices: 36319067--36319665 Score: 1137
Period size: 300 Copynumber: 2.0 Consensus size: 300
36319057 GGTTCGGGGT
36319067 GTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCGATTCTAGGACTACCGTAATGTGTTGGGT
1 GTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCGATTCTAGGACTACCGTAATGTGTTGGGT
*
36319132 CTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGATTTCTGACAATTGTAAATGT
66 CTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGATTTCTGACAATCGTAAATGT
*
36319197 GTTTATTTATAGTAATGGATCCCGATCGTGACCGAGAGGTAGCTGATGATCTTGAGAGTGTAGCG
131 GTTTATTTATAGTAATGGATCCCGATCGTGACCGAGAAGTAGCTGATGATCTTGAGAGTGTAGCG
36319262 CCTGCTCCCGCACAAGGGACAGTGCCGGCAGACTCTCAACCTAATGCTAGTAATCCA-AATGATG
196 CCTGCTCCCGCACAAGGGACAGTGCCGGCAGACTCTCAACCTAATGCTAGTAAT-CAGAATGATG
36319326 AAGCTAGACAAGCATTCTATAGCGTGATGAATGATTGGTTC
260 AAGCTAGACAAGCATTCTATAGCGTGATGAATGATTGGTTC
*
36319367 GTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCGATTCTAGGACTACCGTAATGTTTTGGGT
1 GTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCGATTCTAGGACTACCGTAATGTGTTGGGT
36319432 CTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGATTTCTGACAATCGTAAATGT
66 CTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGATTTCTGACAATCGTAAATGT
36319497 GTTTATTTATAGTAATGGATCCCGATCGTGACCGAGAAGTAGCTGATGATCTTGAGAGTGTAGCG
131 GTTTATTTATAGTAATGGATCCCGATCGTGACCGAGAAGTAGCTGATGATCTTGAGAGTGTAGCG
*
36319562 CCTGCTCCCGCACAAGGGACAGTGCCGGCGGACTCTCAACCTAATGCTAGTAATCAGAATGATGA
196 CCTGCTCCCGCACAAGGGACAGTGCCGGCAGACTCTCAACCTAATGCTAGTAATCAGAATGATGA
*
36319627 AGCTAGACAAGCATTCTATAGTGTGATGAATGATTGGTT
261 AGCTAGACAAGCATTCTATAGCGTGATGAATGATTGGTT
36319666 TAACCAATAC
Statistics
Matches: 293, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
299 2 0.01
300 291 0.99
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (300 bp):
GTTACATTTTATTGGTATCAGAGCTACGGTTTAGTCGATTCTAGGACTACCGTAATGTGTTGGGT
CTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGATTTCTGACAATCGTAAATGT
GTTTATTTATAGTAATGGATCCCGATCGTGACCGAGAAGTAGCTGATGATCTTGAGAGTGTAGCG
CCTGCTCCCGCACAAGGGACAGTGCCGGCAGACTCTCAACCTAATGCTAGTAATCAGAATGATGA
AGCTAGACAAGCATTCTATAGCGTGATGAATGATTGGTTC
Found at i:36321172 original size:50 final size:50
Alignment explanation
Indices: 36321116--36321215 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
36321106 GAGCAAGACT
36321116 ATTGATTTGAGGTGCGCAAATAACGAAGTAATCTGAATTGAGTCTGCGGA
1 ATTGATTTGAGGTGCGCAAATAACGAAGTAATCTGAATTGAGTCTGCGGA
36321166 ATTGATTTGAGGTGCGCAAATAACGAAGTAATCTGAATTGAGTCTGCGGA
1 ATTGATTTGAGGTGCGCAAATAACGAAGTAATCTGAATTGAGTCTGCGGA
36321216 CTTGGAGGGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (50 bp):
ATTGATTTGAGGTGCGCAAATAACGAAGTAATCTGAATTGAGTCTGCGGA
Found at i:36325852 original size:40 final size:39
Alignment explanation
Indices: 36325821--36326030 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
36325811 GGACTAAGAT
* *
36325821 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
36325861 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
36325901 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
36325941 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
36325981 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
36326020 CCGAAGGCATT
1 CCGAAGGCATT
36326031 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:36325984 original size:120 final size:120
Alignment explanation
Indices: 36325768--36326030 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
36325758 TTGAATGCTG
* *
36325768 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
36325832 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
36325888 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
36325951 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
36326007 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36326031 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:36326050 original size:79 final size:80
Alignment explanation
Indices: 36325769--36326065 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
36325759 TGAATGCTGT
* ** * * * **
36325769 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
36325832 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
36325849 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
36325913 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
36325929 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
36325993 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
36326008 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
36326066 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:36354008 original size:7 final size:7
Alignment explanation
Indices: 36353998--36354026 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
36353988 TTATATATAA
36353998 TATTTAT
1 TATTTAT
36354005 TATTTAT
1 TATTTAT
36354012 TATTTAT
1 TATTTAT
36354019 TATTTAT
1 TATTTAT
36354026 T
1 T
36354027 TTGATTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTTAT
Found at i:36381963 original size:46 final size:46
Alignment explanation
Indices: 36381913--36382036 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 46
36381903 TCCACATTAT
* * * *
36381913 GAGAGCCAGTGTAAGACATGTCTGGGATATGCATCGGCATTGAGAC
1 GAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCATGGAGAC
** * *
36381959 GAGAGCTAGTGTAAGACATGTTTGTAACATGCATTGGCCTGGAGAC
1 GAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCATGGAGAC
36382005 GTA-AGCTAGTGTAAGACATGTTTGGGACATGC
1 G-AGAGCTAGTGTAAGACATGTTTGGGACATGC
36382037 TTCAGCTACG
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 66 0.99
47 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25
Consensus pattern (46 bp):
GAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCATGGAGAC
Found at i:36391495 original size:53 final size:53
Alignment explanation
Indices: 36391438--36391652 Score: 421
Period size: 53 Copynumber: 4.1 Consensus size: 53
36391428 ATTCTGGTGG
36391438 CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTGGAAA
1 CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTGGAAA
36391491 CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTGGAAA
1 CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTGGAAA
36391544 CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTGGAAA
1 CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTGGAAA
*
36391597 CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTAGAAA
1 CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTGGAAA
36391650 CTA
1 CTA
36391653 GTCTGCAAAT
Statistics
Matches: 161, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 161 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (53 bp):
CTAAGCCACATATAAATCTGATTTTGGCAAAATATCAATTTGTCCTCTGGAAA
Found at i:36396636 original size:22 final size:22
Alignment explanation
Indices: 36396611--36396654 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
36396601 TTTGAGTCAG
36396611 GATTTATCACACTATCACAGGT
1 GATTTATCACACTATCACAGGT
36396633 GATTTATCACACTATCACAGGT
1 GATTTATCACACTATCACAGGT
36396655 TATATAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (22 bp):
GATTTATCACACTATCACAGGT
Found at i:36401815 original size:18 final size:20
Alignment explanation
Indices: 36401792--36401833 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
36401782 CATTTTTGGT
*
36401792 ATCTA-TTAA-TTGAGTATG
1 ATCTATTTAATTTGAATATG
36401810 ATCTATTTAATTTGAATATG
1 ATCTATTTAATTTGAATATG
36401830 ATCT
1 ATCT
36401834 GAATATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.24
19 4 0.19
20 12 0.57
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (20 bp):
ATCTATTTAATTTGAATATG
Found at i:36403912 original size:21 final size:21
Alignment explanation
Indices: 36403888--36403933 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
36403878 TTTTTTATAG
36403888 AAACAATAGAGAAAATCGTGC
1 AAACAATAGAGAAAATCGTGC
36403909 AAACAATAGAGAAAATCGTGC
1 AAACAATAGAGAAAATCGTGC
36403930 AAAC
1 AAAC
36403934 TCATAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.54, C:0.15, G:0.17, T:0.13
Consensus pattern (21 bp):
AAACAATAGAGAAAATCGTGC
Found at i:36406858 original size:43 final size:43
Alignment explanation
Indices: 36406734--36406845 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
36406724 GCTGGTATTA
36406734 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
* * *
36406777 TATTCGGGCCTTTGTGCCAAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
36406820 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
36406846 GTAATACCGG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.12, C:0.26, G:0.33, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
Found at i:36415113 original size:40 final size:40
Alignment explanation
Indices: 36415053--36415236 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
36415043 TATTCGAATG
*
36415053 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
36415093 ATATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
36415133 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
36415173 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
36415213 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
36415237 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:36415186 original size:80 final size:80
Alignment explanation
Indices: 36415053--36415236 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
36415043 TATTCGAATG
* * *
36415053 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
36415117 ATTTGTACGAGTTG-CT
65 ATTTATACGAG-TGACC
* *
36415133 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
* *
36415198 TTTATGCTAGTGACC
66 TTTATACGAGTGACC
36415213 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36415237 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATACGAGTGACC
Found at i:36419184 original size:10 final size:10
Alignment explanation
Indices: 36419169--36419213 Score: 54
Period size: 10 Copynumber: 4.2 Consensus size: 10
36419159 AAATGCTCGT
36419169 GAAAAAAAAA
1 GAAAAAAAAA
36419179 GAAAAAAAAGAAA
1 G--AAAAAA-AAA
*
36419192 GAAAAGAAAA
1 GAAAAAAAAA
36419202 GAAAAAAAAA
1 GAAAAAAAAA
36419212 GA
1 GA
36419214 GCATATGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
10 15 0.50
11 5 0.17
12 6 0.20
13 4 0.13
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:36419185 original size:9 final size:9
Alignment explanation
Indices: 36419171--36419211 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
36419161 ATGCTCGTGA
36419171 AAAAAAAAG
1 AAAAAAAAG
36419180 AAAAAAAAG
1 AAAAAAAAG
*
36419189 AAAGAAAAG
1 AAAAAAAAG
36419198 AAAAGAAAA-
1 AAAA-AAAAG
36419207 AAAAA
1 AAAAA
36419212 GAGCATATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 1 0.03
9 24 0.83
10 4 0.14
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:36420934 original size:37 final size:37
Alignment explanation
Indices: 36420884--36420963 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
36420874 CTTATTACGA
* *
36420884 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
36420921 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
36420958 GGTCTT
1 AGTCTT
36420964 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:36421153 original size:47 final size:47
Alignment explanation
Indices: 36421094--36421391 Score: 413
Period size: 47 Copynumber: 6.4 Consensus size: 47
36421084 TATCACATTT
* * *
36421094 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
36421139 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
36421186 ATACACCTGTTCACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
36421233 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
36421280 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
** *
36421327 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
36421375 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
36421392 TATTCAATTA
Statistics
Matches: 226, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
45 6 0.03
46 1 0.00
47 200 0.88
48 18 0.08
49 1 0.00
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:36421430 original size:141 final size:140
Alignment explanation
Indices: 36421136--36421422 Score: 350
Period size: 141 Copynumber: 2.0 Consensus size: 140
36421126 GGCCTTATCT
* * *
36421136 CACATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACACATACACCTGTTCACT
1 CACATACACATGTTCACATTCATCACATTGGCCACTCGGCCTTATCACACATACACATGTTCACA
** * *
36421201 TTCATCACATTGGCCATTCGGCTTTATCACACATATACATGTTCACTTTCATCACATTGGCCATT
66 TTCATCACATTGGCCATTCGGCCCTATCACACATATACATGTTCACTTTCATCACATTAGACATT
* * *
36421266 CGGCCTTATCA
131 C-GACATACCA
* * * **
36421277 CACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACA
1 CACATACACATGTTCACATTCATCACATTGGCCACTCGGCCTTATCACACATACACATGTTCACA
36421342 TTCATCACATTGGCCATTCGGCCCTATTCACACATATACACT-TTCACATTT-ATTCA-ATTAGA
66 TTCATCACATTGGCCATTCGGCCCTA-TCACACATATACA-TGTTCAC-TTTCA-TCACATTAGA
36421404 C-TTC-ACATACCA
127 CATTCGACATACCA
*
36421416 CATATAC
1 CACATAC
36421423 TATCATGTAC
Statistics
Matches: 126, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
139 11 0.09
141 84 0.67
142 24 0.19
143 7 0.06
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (140 bp):
CACATACACATGTTCACATTCATCACATTGGCCACTCGGCCTTATCACACATACACATGTTCACA
TTCATCACATTGGCCATTCGGCCCTATCACACATATACATGTTCACTTTCATCACATTAGACATT
CGACATACCA
Found at i:36425886 original size:20 final size:18
Alignment explanation
Indices: 36425853--36425889 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
36425843 TGTGATGTTT
36425853 ATATGCTTAATTTAATTA
1 ATATGCTTAATTTAATTA
36425871 ATATGACTTAAATTTAATT
1 ATATG-CTT-AATTTAATT
36425890 CATGTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 3 0.18
20 9 0.53
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (18 bp):
ATATGCTTAATTTAATTA
Found at i:36430642 original size:55 final size:52
Alignment explanation
Indices: 36430487--36430682 Score: 133
Period size: 53 Copynumber: 3.7 Consensus size: 52
36430477 TTTCTTTTTA
* * * *
36430487 AACTTACCAGTGCCATGTCTTGACATGGTATTACGTGATATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGAT-TCCTTGCCTTATG
* * * * *
36430540 AACTCACCATTGCCATGCCTTGGCATGGTCTTACTTAGGA-TCTTTGCCTTATCG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTAC--ATGATTCCTTGCCTTAT-G
** * * * * *
36430594 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGA-TTCCTTGCCTTAT-G
* * * * *
36430649 AACTTACAAATGCCATGCCTTGGCAAGGTCTTAC
1 AACTCACCAATGCCATGTCTTGACATGGTCTTAC
36430683 TTGGTATCCT
Statistics
Matches: 108, Mismatches: 29, Indels: 11
0.73 0.20 0.07
Matches are distributed among these distances:
53 43 0.40
54 27 0.25
55 38 0.35
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (52 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATTCCTTGCCTTATG
Found at i:36445294 original size:158 final size:158
Alignment explanation
Indices: 36445006--36445319 Score: 565
Period size: 158 Copynumber: 2.0 Consensus size: 158
36444996 ATGCCTAAGT
* *
36445006 GGTCAGGCCGTGTACTACACTCGCCGGTGTCCCTAACCCATGTAACTCTCTGACTTTTAAGGCAT
1 GGTCAGGCCATGTACTACACTCGCCCGTGTCCCTAACCCATGTAACTCTCTGACTTTTAAGGCAT
*
36445071 GAAGAAATTAAAGTAACACCGCCAAGTCAGACGCTCGTGTGCTAGGCTGTGTGACAAATTTTATT
66 GAAGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGACAAATTTTATT
36445136 TTAGAATTTTAGGTGCAGTTTTCATATG
131 TTAGAATTTTAGGTGCAGTTTTCATATG
*
36445164 GGTCAGGCCATGTACTACACTCGCCCGTGTCCCTAACCCGTGTAACTCTCTGACTTTTAAGGCAT
1 GGTCAGGCCATGTACTACACTCGCCCGTGTCCCTAACCCATGTAACTCTCTGACTTTTAAGGCAT
* *
36445229 GAAGAAATTAAAGTAACACGGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGGCAAATTTTATT
66 GAAGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGACAAATTTTATT
*
36445294 TTCGAATTTTAGGTGCAGTTTTCATA
131 TTAGAATTTTAGGTGCAGTTTTCATA
36445320 CGGCTGTGTA
Statistics
Matches: 149, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
158 149 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (158 bp):
GGTCAGGCCATGTACTACACTCGCCCGTGTCCCTAACCCATGTAACTCTCTGACTTTTAAGGCAT
GAAGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGACAAATTTTATT
TTAGAATTTTAGGTGCAGTTTTCATATG
Found at i:36448824 original size:29 final size:29
Alignment explanation
Indices: 36448774--36448926 Score: 213
Period size: 29 Copynumber: 5.3 Consensus size: 29
36448764 TAAGTCCGCG
*
36448774 CACTTAGTG-TTATATAATCAAACTCGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
36448802 CACTTAGTGCTTACATAATCAAACTCGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
36448831 CACTTAGTGCTTACATAATCAAACTCGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
* *
36448860 CACTTAGTGC-TATATAATCAAACTTGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
* * * *
36448888 CACTTAGTGCTATGCA-ATTTAAACCCGCA
1 CACTTAGTGCT-TACATAATCAAACTCGCA
36448917 CACTTAGTGC
1 CACTTAGTGC
36448927 CAATCTCATG
Statistics
Matches: 113, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 35 0.31
29 76 0.67
30 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (29 bp):
CACTTAGTGCTTACATAATCAAACTCGCA
Found at i:36448881 original size:57 final size:58
Alignment explanation
Indices: 36448774--36448926 Score: 213
Period size: 57 Copynumber: 2.7 Consensus size: 58
36448764 TAAGTCCGCG
*
36448774 CACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCGCA
1 CACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCGCA
* *
36448831 CACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACTTGCA
1 CACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCGCA
* * * *
36448888 CACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
36448927 CAATCTCATG
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 56 0.64
58 31 0.36
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (58 bp):
CACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCGCA
Found at i:36449104 original size:19 final size:19
Alignment explanation
Indices: 36449080--36449118 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
36449070 ATAATTACAT
36449080 AGACATTATGACTATTTAA
1 AGACATTATGACTATTTAA
*
36449099 AGACATTATGCCTATTTAA
1 AGACATTATGACTATTTAA
36449118 A
1 A
36449119 TCAATACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (19 bp):
AGACATTATGACTATTTAA
Found at i:36460091 original size:53 final size:53
Alignment explanation
Indices: 36460011--36460116 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
36460001 GCAAGTTGAG
*
36460011 CCCAAGATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGTCCGGTTGCGT
1 CCCAAGATTCATTGGGCCGTACAAAATCTCCGAACGAGTTGGTCCGGTTGCGT
36460064 CCCAAGATTCATTGGGCCGTACAAAATCTCCGAACGAGTTGGTCCGGTTGCGT
1 CCCAAGATTCATTGGGCCGTACAAAATCTCCGAACGAGTTGGTCCGGTTGCGT
36460117 ATAGATTGAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (53 bp):
CCCAAGATTCATTGGGCCGTACAAAATCTCCGAACGAGTTGGTCCGGTTGCGT
Found at i:36462145 original size:40 final size:40
Alignment explanation
Indices: 36462055--36462361 Score: 273
Period size: 40 Copynumber: 7.6 Consensus size: 40
36462045 TTGAATGCTG
* * * * * *
36462055 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * * *
36462095 TCTGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
36462135 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA---A
** * *
36462179 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
** *
36462219 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
36462259 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
36462299 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
36462338 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36462362 TGAACGAGGA
Statistics
Matches: 227, Mismatches: 31, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
39 36 0.16
40 147 0.65
41 10 0.04
43 2 0.01
44 31 0.14
45 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:36462206 original size:84 final size:81
Alignment explanation
Indices: 36462102--36462363 Score: 302
Period size: 84 Copynumber: 3.2 Consensus size: 81
36462092 ATATCTGGAT
*
36462102 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
1 TAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
36462167 TTATTAAATCCATCCGGAC
66 TTATTAAA---ATCCGGAC
**
36462186 TAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCGA
1 TAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGA
**
36462250 GTTATT-AAATCCGGGT
65 GTTATTAAAATCCGGAC
* * ** * *
36462266 TAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGA
1 TAAGAT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGA
* *
36462329 GTTACTAAAA-CCGGGC
65 GTTATTAAAATCCGGAC
*
36462345 TATG-TCCCGAAGGCATTTG
1 TAAGAT-CCGAAGGCATTTG
36462364 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
79 34 0.22
80 55 0.35
83 2 0.01
84 65 0.41
85 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (81 bp):
TAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
TTATTAAAATCCGGAC
Found at i:36462381 original size:79 final size:79
Alignment explanation
Indices: 36462130--36462396 Score: 218
Period size: 79 Copynumber: 3.3 Consensus size: 79
36462120 GTGCGAGATA
* * *
36462130 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCATCCGGACTAAGAT-CC
1 CTAAATCC-GGTTAAATCCCGAAGGCATTCGTGCGAGTTACTAAA---A-CCGGGCTAAG-TCCC
* ** *
36462194 GAAGGCATTTGTGCGA-GATA
60 GAAGGCATTCGAACGAGGA-G
* * * *
36462214 CTAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAG
1 CTAAATCCGG-TTAA-ATCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
** **
36462278 GCATTCGTGCGAGTTG
64 GCATTCGAACGAGGAG
* ** * *
36462294 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCC-GGTTAAATCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
36462358 CATTTGAACGAGGAG
65 CATTCGAACGAGGAG
*
36462373 CTATATCCGGTTAAATCCCGAAGG
1 CTAAATCCGGTTAAATCCCGAAGG
36462397 TACGTGATTT
Statistics
Matches: 150, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
78 14 0.09
79 48 0.32
80 45 0.30
81 2 0.01
83 2 0.01
84 38 0.25
85 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CTAAATCCGGTTAAATCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAG
Found at i:36470360 original size:40 final size:40
Alignment explanation
Indices: 36470277--36470499 Score: 204
Period size: 40 Copynumber: 5.6 Consensus size: 40
36470267 TTGAATGCTG
* * * * *
36470277 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
36470317 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
36470357 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
36470397 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * * *
36470437 TCCGGGTTATGTCGCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
36470476 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36470500 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
39 33 0.21
40 113 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:36470414 original size:80 final size:79
Alignment explanation
Indices: 36470277--36470501 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 79
36470267 TTGAATGCTG
* * * * * *
36470277 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
36470340 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
36470357 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
36470422 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * * *
36470437 TCCGGGTTATGTCGCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
36470501 G
65 G
36470502 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 80 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:36470499 original size:79 final size:80
Alignment explanation
Indices: 36470353--36470499 Score: 224
Period size: 79 Copynumber: 1.9 Consensus size: 80
36470343 TGCGAGATAC
** *
36470353 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
36470418 ATTCGTGCGAATTGT
66 ATTCGTGCGAATTGT
* * * *
36470433 TAAATCCGGGTTATGTCGCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
36470497 ATT
66 ATT
36470500 TGAACGAGGA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 34 0.57
80 26 0.43
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
ATTCGTGCGAATTGT
Found at i:36470519 original size:79 final size:80
Alignment explanation
Indices: 36470352--36470534 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
36470342 GTGCGAGATA
** *
36470352 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
36470417 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * * *
36470432 TTAAATCCGGGTTATGTCGCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
36470496 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
36470511 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
36470535 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 13 0.15
79 45 0.54
80 26 0.31
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:36470519 original size:119 final size:120
Alignment explanation
Indices: 36470277--36470534 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
36470267 TTGAATGCTG
* * * * *
36470277 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
36470342 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
36470397 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCGCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGATC-CGAAGGCCA
* * * * *
36470459 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
36470516 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36470535 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 52 0.45
120 38 0.33
121 10 0.09
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:36473286 original size:47 final size:47
Alignment explanation
Indices: 36473225--36473541 Score: 546
Period size: 47 Copynumber: 6.7 Consensus size: 47
36473215 TGTATATATA
** *
36473225 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* *
36473272 TGAGATAAGTCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
36473319 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
36473366 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
36473413 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* *
36473460 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATG
*
36473507 TGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
36473542 GAAGTGTATA
Statistics
Matches: 259, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 258 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
Found at i:36473487 original size:22 final size:22
Alignment explanation
Indices: 36473460--36473534 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
36473450 CATGTGTATG
36473460 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
36473482 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
36473507 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
36473529 TGTGAT
1 TGTGAT
36473535 GGATGTGGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:36476309 original size:34 final size:34
Alignment explanation
Indices: 36476267--36476331 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
36476257 TTAAAGGTTG
36476267 AAAAACCTTATTCTAATCACTGTCAAATAGATTA
1 AAAAACCTTATTCTAATCACTGTCAAATAGATTA
36476301 AAAAACCTTATTCTAATCACTGTCAAATAGA
1 AAAAACCTTATTCTAATCACTGTCAAATAGA
36476332 ATTGTAGTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (34 bp):
AAAAACCTTATTCTAATCACTGTCAAATAGATTA
Found at i:36478215 original size:41 final size:40
Alignment explanation
Indices: 36478159--36478244 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
36478149 CAAATACATT
* *
36478159 TAAAACAAATATTAAAATAAGAAACAAATAAAAAATGATAC
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAA
* * * * *
36478200 TAAAACAATTCTTAAAACAATACACAAATTAAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
36478240 TAAAA
1 TAAAA
36478245 AGTGATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.22
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:36479350 original size:148 final size:147
Alignment explanation
Indices: 36479040--36479352 Score: 399
Period size: 147 Copynumber: 2.2 Consensus size: 147
36479030 AACTAGGAAG
36479040 TTTAGATTTTAAAAAATAAAAATACATTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAA
1 TTTAGATTTTAAAAAATAAAAATACATTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAA
* * *
36479105 ACAAATTTTTGATTTTTTCAACTATTTCAAAATAAAAGTTTTAATCATTAAGAAAGATAGTGTTT
66 ACAAAATTTTGATTTTTTCAACTATTTCAAAATAAAAGTTTTAATCATTAAGAAAGATAATGATT
* *
36479170 TTTTTTGAAGGAGAAAT
131 TTTTTTGAAAGAGAAAC
* ** *
36479187 TTTAGATTTTGAAAAATAAAAATATGTTTTTTTAAGTCATTTTAAAGGAAAGTTT-AAGTTATTA
1 TTTAGATTTTAAAAAATAAAAATACATTTTTTT-AGTCATTTTAAAGGAAAGTTTAAAATT-TTA
* * * * **
36479251 AAATAAAATTTTGATTTTTTTAACTATTTCGAAAT-AAAGTTTTGATTTTTAAGAAA-AGTAAT-
64 AAACAAAATTTTGATTTTTTCAACTATTTCAAAATAAAAGTTTTAATCATTAAGAAAGA-TAATG
36479313 ATTTTTTTT-AAAGA-AAAC
128 ATTTTTTTTGAAAGAGAAAC
36479331 TTT-GATTTTACAAAAA-AAAAAT
1 TTTAGATTTTA-AAAAATAAAAAT
36479353 CTGGCCACCA
Statistics
Matches: 146, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
143 12 0.08
144 11 0.08
145 4 0.03
146 9 0.06
147 55 0.38
148 55 0.38
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (147 bp):
TTTAGATTTTAAAAAATAAAAATACATTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAA
ACAAAATTTTGATTTTTTCAACTATTTCAAAATAAAAGTTTTAATCATTAAGAAAGATAATGATT
TTTTTTGAAAGAGAAAC
Found at i:36480471 original size:37 final size:37
Alignment explanation
Indices: 36480412--36480483 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
36480402 AGCTCAGATG
*
36480412 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
36480449 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
36480484 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:36480683 original size:48 final size:48
Alignment explanation
Indices: 36480630--36480771 Score: 230
Period size: 48 Copynumber: 3.0 Consensus size: 48
36480620 CCACACCTCC
* * * *
36480630 TACATACTTCACACTAGCCCTTCAGCTTTACCACATATACGTATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
36480678 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
36480726 TACATATTTCACATTAGACATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
36480772 TAATCTTGTG
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:36484052 original size:82 final size:82
Alignment explanation
Indices: 36483904--36484096 Score: 291
Period size: 82 Copynumber: 2.4 Consensus size: 82
36483894 ATTACCACAA
* * * * *
36483904 GCACAATTGCCTTCGGGTCTTAACCCGG--GCATAGCAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCACACAAATGCCTGCGGGTCTTAG
36483967 CCCGGACATATCAACTT
66 CCCGGACATATCAACTT
* *
36483984 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCACACAAATGCCTGCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCACACAAATGCCTGCGGGTCTTAG
*
36484049 CCCGGATATATCAACTT
66 CCCGGACATATCAACTT
*
36484066 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
36484097 AAATTCAAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 27 0.26
82 75 0.74
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (82 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATACATAGCAACTCACACAAATGCCTGCGGGTCTTAG
CCCGGACATATCAACTT
Found at i:36484095 original size:40 final size:40
Alignment explanation
Indices: 36483904--36484096 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
36483894 ATTACCACAA
* ** *
36483904 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
36483944 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATATCAACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
36483984 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
* * * *
36484026 ACACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
36484066 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
36484097 AAATTCAAAT
Statistics
Matches: 135, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 2 0.01
40 96 0.71
41 2 0.01
42 35 0.26
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:36488716 original size:3 final size:3
Alignment explanation
Indices: 36488710--36488762 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
36488700 AATTAAATCA
36488710 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36488758 AAT AA
1 AAT AA
36488763 AGGATCGAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36489552 original size:55 final size:55
Alignment explanation
Indices: 36489486--36489759 Score: 268
Period size: 55 Copynumber: 5.3 Consensus size: 55
36489476 AGGCCCTCAG
36489486 TGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
1 TGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
* ** * * *
36489541 TGTAGGCAATGTTATGACAGCT-T-GGTGACT-C-CACTAGG--CCCT---C--A
1 TGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
36489585 GTGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
1 -TGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
* ** * * *
36489641 TGTAGGCAATGTTATGACAGCT-T-GGTGACT-C-CACTAGG--CCCT---C--A
1 TGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
36489685 GTGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
1 -TGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
36489741 TGTAGGCAATGTTATGACA
1 TGTAGGCAATGTTATGACA
36489760 GCTTGGTGAC
Statistics
Matches: 171, Mismatches: 24, Indels: 48
0.70 0.10 0.20
Matches are distributed among these distances:
44 2 0.01
45 42 0.25
46 4 0.02
47 6 0.04
48 2 0.01
49 20 0.12
51 20 0.12
52 2 0.01
53 6 0.04
54 4 0.02
55 61 0.36
56 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (55 bp):
TGTAGGCAATGTTATGACAACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTA
Found at i:36489578 original size:100 final size:100
Alignment explanation
Indices: 36489405--36489778 Score: 748
Period size: 100 Copynumber: 3.7 Consensus size: 100
36489395 ATTTATTTAT
36489405 ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
1 ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
36489470 TCCACTAGGCCCTCAGTGTAGGCAATGTTATGACA
66 TCCACTAGGCCCTCAGTGTAGGCAATGTTATGACA
36489505 ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
1 ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
36489570 TCCACTAGGCCCTCAGTGTAGGCAATGTTATGACA
66 TCCACTAGGCCCTCAGTGTAGGCAATGTTATGACA
36489605 ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
1 ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
36489670 TCCACTAGGCCCTCAGTGTAGGCAATGTTATGACA
66 TCCACTAGGCCCTCAGTGTAGGCAATGTTATGACA
36489705 ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
1 ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
36489770 TCCACTAGG
66 TCCACTAGG
36489779 GACGTTAGTG
Statistics
Matches: 274, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 274 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (100 bp):
ACTCTACCTAATTGCTTACTAGGCTCCCTACCCTTATGTAGGCAATGTTATGACAGCTTGGTGAC
TCCACTAGGCCCTCAGTGTAGGCAATGTTATGACA
Found at i:36490976 original size:12 final size:12
Alignment explanation
Indices: 36490961--36491018 Score: 73
Period size: 12 Copynumber: 4.8 Consensus size: 12
36490951 TCAATCATTA
*
36490961 ATTCATTTATCC
1 ATTCATTCATCC
36490973 ATTCATTCATCC
1 ATTCATTCATCC
*
36490985 ATCCATTCATCC
1 ATTCATTCATCC
36490997 ATTCATTCA-CTC
1 ATTCATTCATC-C
*
36491009 ATTCACTCAT
1 ATTCATTCAT
36491019 TTGTTTATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
11 1 0.03
12 39 0.98
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (12 bp):
ATTCATTCATCC
Found at i:36490981 original size:4 final size:4
Alignment explanation
Indices: 36490950--36491019 Score: 59
Period size: 4 Copynumber: 17.5 Consensus size: 4
36490940 GTGCCCCAAT
* * * * * * *
36490950 TTCA ATCA TTAA TTCA TTTA TCCA TTCA TTCA TCCA TCCA TTCA TCCA
1 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA
* *
36490998 TTCA TTCA CTCA TTCA CTCA TT
1 TTCA TTCA TTCA TTCA TTCA TT
36491020 TGTTTATTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (4 bp):
TTCA
Found at i:36491310 original size:18 final size:19
Alignment explanation
Indices: 36491273--36491310 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
36491263 TTTAATTTCC
36491273 TTCAAGTCACTTTTATTCA
1 TTCAAGTCACTTTTATTCA
36491292 TTCAA-TCA-TTTTCATTCA
1 TTCAAGTCACTTTT-ATTCA
36491310 T
1 T
36491311 ATACCAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.26, C:0.21, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCAAGTCACTTTTATTCA
Found at i:36499496 original size:43 final size:42
Alignment explanation
Indices: 36499444--36499570 Score: 139
Period size: 44 Copynumber: 2.9 Consensus size: 42
36499434 ATAGGGTTCT
* *
36499444 GATATGTGATTTTGTGTAAGACTACATCTGGCACGTTGGCATC
1 GATATGTGATTTTGTGTAAGAC-ACGTCTGGGACGTTGGCATC
* *
36499487 GATTTGTGATTTATGTGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATGTGATTT-TGTGTAAGACAC-GTCTGGGAC-GTTGGCATC
***
36499531 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
1 GATATGTGATTTTGTGTAAGA-CACGTCTGGGACGTTGGC
36499571 GTTGTATGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
42 1 0.01
43 32 0.46
44 36 0.51
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (42 bp):
GATATGTGATTTTGTGTAAGACACGTCTGGGACGTTGGCATC
Found at i:36499507 original size:44 final size:43
Alignment explanation
Indices: 36499444--36499570 Score: 143
Period size: 43 Copynumber: 2.9 Consensus size: 43
36499434 ATAGGGTTCT
* *
36499444 GATATGTGATTT-TGTGTAAGACTACATCTGGCACGTTGGCATC
1 GATATGTGATTTATGTGTAAGAC-ACGTCTGGGACGTTGGCATC
* *
36499487 GATTTGTGATTTATGTGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATGTGATTTATGTGTAAGACAC-GTCTGGGAC-GTTGGCATC
**
36499531 GATATGTGA-TTACATGTAAGACCACGTCTGGGACGTTGGC
1 GATATGTGATTTATGTGTAAGA-CACGTCTGGGACGTTGGC
36499571 GTTGTATGAG
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
42 1 0.01
43 35 0.49
44 34 0.48
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
GATATGTGATTTATGTGTAAGACACGTCTGGGACGTTGGCATC
Found at i:36504650 original size:40 final size:40
Alignment explanation
Indices: 36504585--36504809 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
36504575 CAATTGAGGA
* *
36504585 TTATATCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
36504625 TTATTTTCGGGTTAAGTCCCAAAGGCATTCGTGCTAGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
36504665 TTATTCCCGGGTTGAGTCCCAAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
36504705 TTATTTCCAGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
36504745 CTATTTCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
36504785 TTACATCCGGGCTAAATCCCGAAGG
1 TTATTTCCGGGTTAAGTCCCGAAGG
36504810 TAATTGGGTT
Statistics
Matches: 162, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 162 1.00
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:36510826 original size:44 final size:44
Alignment explanation
Indices: 36510759--36510881 Score: 155
Period size: 43 Copynumber: 2.8 Consensus size: 44
36510749 AATAGGGTTC
*
36510759 CGATATGTGATTT-CGTGTAAGACCACATCTGGGAC-GTTGGCAT
1 CGATATGTGATTTACGTGTAAGACCACGTCTGGGACAG-TGGCAT
*
36510802 CGATTTGTGATTTACGTGTAAGACC-CTGTCTGGGACAGTGGCAT
1 CGATATGTGATTTACGTGTAAGACCAC-GTCTGGGACAGTGGCAT
* * *
36510846 TGATATGTGA-TTACATGTAAGACCACGTTTGGGACA
1 CGATATGTGATTTACGTGTAAGACCACGTCTGGGACA
36510882 TTAGCATTGT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
43 35 0.50
44 34 0.49
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
CGATATGTGATTTACGTGTAAGACCACGTCTGGGACAGTGGCAT
Found at i:36518306 original size:46 final size:46
Alignment explanation
Indices: 36518239--36518406 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
36518229 GCCCATAAGC
*
36518239 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
* * * * * * **
36518285 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAG-TTACATC-TCT
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCATCCA-CAAGT
* * *
36518331 CGAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
*
36518378 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
36518407 TGCCCAAACA
Statistics
Matches: 95, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
46 61 0.64
47 34 0.36
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
Found at i:36518397 original size:93 final size:93
Alignment explanation
Indices: 36518238--36518410 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
36518228 CGCCCATAAG
* * *
36518238 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
36518303 ACGAGCTCAGATGCCTAGTTACATCTCT
66 ACGAGCTCAGATGCCTAGTTACATCTCT
*
36518331 CGAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
* *
36518396 ACGAGTTCGGATGCC
66 ACGAGCTCAGATGCC
36518411 CAAACATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.19
Consensus pattern (93 bp):
CGAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCT
Found at i:36518425 original size:46 final size:46
Alignment explanation
Indices: 36518239--36518425 Score: 134
Period size: 46 Copynumber: 4.0 Consensus size: 46
36518229 GCCCATAAGC
* * * * *
36518239 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA--CAAGT
1 GAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCCATACATCCTAGT
* * *
36518285 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCT--C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACATC-CTAGT
* * * * *
36518332 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCATACATCCTAGT
* *
36518378 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCTAGT
36518424 GA
1 GA
36518426 CATGTCACTT
Statistics
Matches: 107, Mismatches: 23, Indels: 22
0.70 0.15 0.14
Matches are distributed among these distances:
44 11 0.10
45 1 0.01
46 60 0.56
47 30 0.28
49 5 0.05
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.19
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCTAGT
Found at i:36520970 original size:48 final size:49
Alignment explanation
Indices: 36520917--36521027 Score: 138
Period size: 49 Copynumber: 2.3 Consensus size: 49
36520907 GTCCCAGATT
* *
36520917 GGTCTTACACTGACTTTCATATATCGAG-G-CGATGCCATGT-CTAAGACA
1 GGTCTTACACTGACTCTCATATATC-AGTGTCGATGCCATGTCCCAA-ACA
* * *
36520965 GGTCTTACATTGGCTCTCATCTATCAGTGTCGATGCCATGTCCCAAACA
1 GGTCTTACACTGACTCTCATATATCAGTGTCGATGCCATGTCCCAAACA
36521014 GGTCTTACACTGAC
1 GGTCTTACACTGAC
36521028 ACACAATAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
47 2 0.04
48 22 0.42
49 26 0.49
50 3 0.06
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (49 bp):
GGTCTTACACTGACTCTCATATATCAGTGTCGATGCCATGTCCCAAACA
Found at i:36525589 original size:49 final size:49
Alignment explanation
Indices: 36525473--36525597 Score: 128
Period size: 49 Copynumber: 2.6 Consensus size: 49
36525463 AAAGTCAATT
* * * *
36525473 CCATGTCCC-AGCAAGTTTTACACTGACTTTCATATATCGAGGCCGATG
1 CCATGTCCCAAACAAGTCTTACACTGACTCTCATACATCGAGGCCGATG
* * * * * *
36525521 CCATGTCCCAGATAGGTCTTACACTGGCTCTCATCCATCG-GTGTCGATG
1 CCATGTCCCAAACAAGTCTTACACTGACTCTCATACATCGAG-GCCGATG
*
36525570 CCATGTCCCAAACAAGTCTTACGCTGAC
1 CCATGTCCCAAACAAGTCTTACACTGAC
36525598 ACACAACAAG
Statistics
Matches: 60, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
48 10 0.17
49 50 0.83
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
CCATGTCCCAAACAAGTCTTACACTGACTCTCATACATCGAGGCCGATG
Found at i:36531967 original size:49 final size:49
Alignment explanation
Indices: 36531903--36532121 Score: 184
Period size: 49 Copynumber: 4.6 Consensus size: 49
36531893 ATCAAAGTCG
*
36531903 ATGCCATGTTCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCTA
1 ATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCTA
* ** * * **
36531952 ATGCCATGTCTCAGACAGGTCTTACACTGGCTCTCATGTATCG-GTATCA
1 ATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCT-A
* * * * *
36532001 ATGCCATGTCCTAGACAGGTCTTACACTAAC--ACACA-A-C-AAGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCTA
* * * **
36532045 ACGCCATGTCCCAGACAGGTCTTACACTAGCTTGT-ATATTTCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAACTT-TCATATATCGAGGCTA
* *
36532094 ATG-CATGTCCCATACATGTCTTACACTA
1 ATGCCATGTCCCAGACAGGTCTTACACTA
36532122 GCATACATAT
Statistics
Matches: 132, Mismatches: 30, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
44 28 0.21
45 2 0.02
46 3 0.02
47 2 0.02
48 26 0.20
49 71 0.54
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCTA
Found at i:36536261 original size:22 final size:23
Alignment explanation
Indices: 36536207--36536258 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
36536197 AATAAAACCT
36536207 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
* *
36536229 AATAAAAAGTAGTCTTAAAGTAG
1 AATAAAAAGTAGTCTTAAAGAAA
36536252 AATAAAA
1 AATAAAA
36536259 GTAAAAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:36546329 original size:55 final size:55
Alignment explanation
Indices: 36546236--36546341 Score: 169
Period size: 55 Copynumber: 1.9 Consensus size: 55
36546226 TTTCGTTGAG
36546236 TATGACCATAAGTGACTAAATTGGTGAGTGATTGGTCAAATTTAGGTTCTGATAA
1 TATGACCATAAGTGACTAAATTGGTGAGTGATTGGTCAAATTTAGGTTCTGATAA
* * *
36546291 TATGACTATAAGTGACTATATTGGTGAGATG-TTTGTCAAATTTAGGTTCTG
1 TATGACCATAAGTGACTAAATTGGTGAG-TGATTGGTCAAATTTAGGTTCTG
36546342 GTGGTGTTGA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 45 0.96
56 2 0.04
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (55 bp):
TATGACCATAAGTGACTAAATTGGTGAGTGATTGGTCAAATTTAGGTTCTGATAA
Found at i:36552365 original size:16 final size:15
Alignment explanation
Indices: 36552340--36552431 Score: 75
Period size: 16 Copynumber: 6.0 Consensus size: 15
36552330 AAGATTTTGC
*
36552340 CAAAATAAAACAAACA
1 CAAAAAAAAACAAA-A
36552356 CAAAAAAAAA-AAGAA
1 CAAAAAAAAACAA-AA
*
36552371 -AAAAAACAACAAAA
1 CAAAAAAAAACAAAA
*
36552385 CAACAAAACAACAAAA
1 CAA-AAAAAAACAAAA
36552401 CAAAAAGGAAAACAAAA
1 CAAAAA--AAAACAAAA
36552418 -AAATAAAAAA-AAAA
1 CAAA-AAAAAACAAAA
36552432 TAAAGAGAGA
Statistics
Matches: 66, Mismatches: 3, Indels: 16
0.78 0.04 0.19
Matches are distributed among these distances:
14 14 0.21
15 14 0.21
16 28 0.42
17 10 0.15
ACGTcount: A:0.82, C:0.13, G:0.03, T:0.02
Consensus pattern (15 bp):
CAAAAAAAAACAAAA
Found at i:36552384 original size:8 final size:8
Alignment explanation
Indices: 36552373--36552403 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
36552363 AAAAAGAAAA
36552373 AAAACAAC
1 AAAACAAC
36552381 AAAACAAC
1 AAAACAAC
36552389 AAAACAAC
1 AAAACAAC
36552397 AAAACAA
1 AAAACAA
36552404 AAAGGAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAACAAC
Found at i:36552426 original size:8 final size:8
Alignment explanation
Indices: 36552341--36552406 Score: 55
Period size: 8 Copynumber: 8.2 Consensus size: 8
36552331 AGATTTTGCC
*
36552341 AAAATAAA
1 AAAACAAA
36552349 ACAAACACAA
1 A-AAACA-AA
36552359 AAAA-AAA
1 AAAACAAA
*
36552366 AAGA-AAA
1 AAAACAAA
*
36552373 AAAACAAC
1 AAAACAAA
*
36552381 AAAACAAC
1 AAAACAAA
*
36552389 AAAACAAC
1 AAAACAAA
36552397 AAAACAAA
1 AAAACAAA
36552405 AA
1 AA
36552407 GGAAAACAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
7 11 0.22
8 29 0.58
9 7 0.14
10 3 0.06
ACGTcount: A:0.82, C:0.15, G:0.02, T:0.02
Consensus pattern (8 bp):
AAAACAAA
Found at i:36552427 original size:8 final size:8
Alignment explanation
Indices: 36552355--36552428 Score: 55
Period size: 8 Copynumber: 9.1 Consensus size: 8
36552345 TAAAACAAAC
36552355 ACAAAAAA
1 ACAAAAAA
36552363 A-AAAAGAA
1 ACAAAA-AA
36552371 A-AAAAACA
1 ACAAAAA-A
*
36552379 ACAAAACA
1 ACAAAAAA
*
36552387 ACAAAACA
1 ACAAAAAA
36552395 ACAAAACAA
1 ACAAAA-AA
*
36552404 A-AAGGAAA
1 ACAA-AAAA
36552412 ACAAAAAA
1 ACAAAAAA
*
36552420 ATAAAAAA
1 ACAAAAAA
36552428 A
1 A
36552429 AAATAAAGAG
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
7 5 0.09
8 41 0.75
9 9 0.16
ACGTcount: A:0.82, C:0.12, G:0.04, T:0.01
Consensus pattern (8 bp):
ACAAAAAA
Found at i:36555583 original size:40 final size:39
Alignment explanation
Indices: 36555510--36555719 Score: 167
Period size: 40 Copynumber: 5.3 Consensus size: 39
36555500 CTAACGGGGT
* * * *
36555510 TAAGTCTCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGAAT-ATTCCGGGC
* * *
36555550 TAAGTCCCGAAGGCATTGGTGCGAGTTAATAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGAAT-ATTCCGGGC
* * *
36555590 TAAGTCCCGAAGGCATTTGTGTGAATTG-CTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCG-AGTGAATAT-TCCGGGC
* * *
36555630 TAAGACCCGAAGGCATTTATGCTAGTGACCATA-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGA--ATATTCCGGGC
* * **
36555670 TAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGAATAT-TCCGGGC
*
36555708 TAAATCCCGAAG
1 TAAGTCCCGAAG
36555720 ATACTTGGGT
Statistics
Matches: 137, Mismatches: 26, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
37 2 0.01
38 13 0.09
39 17 0.12
40 101 0.74
41 2 0.01
42 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGAATATTCCGGGC
Done.