Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 115 of 276
Found at i:36557542 original size:21 final size:22
Alignment explanation
Indices: 36557500--36557551 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
36557490 GATTCAAAAA
* *
36557500 GCCCGTGTGGAGGGAGGTACAC
1 GCCCGTGTGGACGGAGGCACAC
36557522 GCCCGTGTGG-CGGAGGCACAC
1 GCCCGTGTGGACGGAGGCACAC
*
36557543 GACCGTGTG
1 GCCCGTGTG
36557552 AAACATGGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.15, C:0.27, G:0.44, T:0.13
Consensus pattern (22 bp):
GCCCGTGTGGACGGAGGCACAC
Found at i:36561898 original size:42 final size:42
Alignment explanation
Indices: 36561841--36562370 Score: 630
Period size: 42 Copynumber: 12.6 Consensus size: 42
36561831 TGTTACGTAT
* *
36561841 GAGGTCCATTTACTTTTCATTACATTTA-AGGGCCCAGGTTTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGA-GGCCCAGGTGTG
** * * ** *
36561883 GAGGTTTATTCACTTTTCATCGCATTTAGAGATCCAAGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * * ****
36561925 GAAGTCTATTCACTTTTCATTGCATTTAGAGATTTAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * * *
36561967 GAGGTCCCTTTACTTTTCCTTGTATTTAGAGACCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * * *
36562009 GAGGTCCTTTTACTTTTCGTTGCATTTAGAGGCCTAGGTGTT
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* *
36562051 GAGCTTCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * * *
36562093 GAGGTCCATTCACATTTCATTGCATTTAGAGACCCAGGTGTA
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * * *
36562135 GAGGTCCATTCACATTTCATTGCATTTAGAGACCTAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * *
36562177 GAGGTCCATTCACATTTCATTGCATTTAGAGGCCCAAGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* * * * *
36562219 GAGGTCCATTTGCTTTTTATTGCATATAGAGGCACAGGTATG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* *
36562261 GAGGTCCATTTACTTTTTATTGCATTTAGAGGCCCAAGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
* *
36562303 GAGGTCCATTTACTTTTCATTGCATTTAAAGGCCTAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
36562345 GAGGTCCATTTACTTTTCATTGCATT
1 GAGGTCCATTTACTTTTCATTGCATT
36562371 GTATATGAAG
Statistics
Matches: 423, Mismatches: 64, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
42 422 1.00
43 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.38
Consensus pattern (42 bp):
GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTG
Found at i:36567057 original size:3 final size:3
Alignment explanation
Indices: 36567049--36567074 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36567039 TTACTAAATA
36567049 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
36567075 AGGATCGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:36570788 original size:15 final size:15
Alignment explanation
Indices: 36570764--36570794 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36570754 AATTTGGATG
36570764 TTATTGTTATTATTT
1 TTATTGTTATTATTT
*
36570779 TTATTTTTATTATTT
1 TTATTGTTATTATTT
36570794 T
1 T
36570795 GTAGGTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (15 bp):
TTATTGTTATTATTT
Found at i:36572599 original size:25 final size:25
Alignment explanation
Indices: 36572571--36572641 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
36572561 CCTCTTTTAA
*
36572571 AAACTGGGGCAAAGCCCTTTTTGAT
1 AAACTGGGGCAAAGCCCTTTTCGAT
*
36572596 AAACTGGGGCAAAGCCCTTTTCGGT
1 AAACTGGGGCAAAGCCCTTTTCGAT
36572621 AAACTGGGGCAAAGCCCTTTT
1 AAACTGGGGCAAAGCCCTTTT
36572642 AGCACTTCCT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (25 bp):
AAACTGGGGCAAAGCCCTTTTCGAT
Found at i:36572701 original size:10 final size:10
Alignment explanation
Indices: 36572688--36572726 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
36572678 ATATGTGAAT
36572688 ATATCATGGC
1 ATATCATGGC
36572698 ATATCATGTGC
1 ATATCATG-GC
36572709 ATATCATGGC
1 ATATCATGGC
36572719 ATATCATG
1 ATATCATG
36572727 TACAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:36572714 original size:21 final size:21
Alignment explanation
Indices: 36572688--36572727 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
36572678 ATATGTGAAT
36572688 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
36572709 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
36572728 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:36576374 original size:25 final size:25
Alignment explanation
Indices: 36576346--36576416 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
36576336 CCTCTTTTAA
36576346 AAACTGGGGCAAAGCCCTTTTTGAT
1 AAACTGGGGCAAAGCCCTTTTTGAT
* *
36576371 AAACTAGGGCAAAGCCCTTTTTGGT
1 AAACTGGGGCAAAGCCCTTTTTGAT
36576396 AAACTGGGGCAAAG-CCTTTTT
1 AAACTGGGGCAAAGCCCTTTTT
36576417 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
24 7 0.16
25 36 0.84
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
AAACTGGGGCAAAGCCCTTTTTGAT
Found at i:36576488 original size:21 final size:21
Alignment explanation
Indices: 36576462--36576502 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36576452 CATATGTGAA
* *
36576462 TATATCATGGCATATCATGTG
1 TATATCATGGAAAATCATGTG
36576483 TATATCATGGAAAATCATGT
1 TATATCATGGAAAATCATGT
36576503 ATAAAAGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (21 bp):
TATATCATGGAAAATCATGTG
Found at i:36578541 original size:20 final size:18
Alignment explanation
Indices: 36578508--36578563 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
36578498 ACAATTCTTT
36578508 TCTCTTCTTATTTTCTCC
1 TCTCTTCTTATTTTCTCC
36578526 TCTCTTCATCTATTTTCT-C
1 TCTCTTC-T-TATTTTCTCC
36578545 T-TCTTCTTATTTT-TCC
1 TCTCTTCTTATTTTCTCC
36578561 TCT
1 TCT
36578564 ATAGCCGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.03
16 8 0.24
17 2 0.06
18 12 0.35
19 3 0.09
20 8 0.24
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.62
Consensus pattern (18 bp):
TCTCTTCTTATTTTCTCC
Found at i:36580007 original size:85 final size:85
Alignment explanation
Indices: 36579864--36580127 Score: 510
Period size: 85 Copynumber: 3.1 Consensus size: 85
36579854 GGCCAGCCAT
36579864 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
36579929 GTAAGGTTTAATAAAATAAA
66 GTAAGGTTTAATAAAATAAA
36579949 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
36580014 GTAAGGTTTAATAAAATAAA
66 GTAAGGTTTAATAAAATAAA
36580034 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
36580099 GTAAGGATTAATAAAATAAA
66 GTAAGGTTTAATAAAATAAA
*
36580119 GGGCATGGG
1 GAGCATGGG
36580128 CAATAAAATA
Statistics
Matches: 177, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 177 1.00
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGTTTAATAAAATAAA
Found at i:36581446 original size:47 final size:47
Alignment explanation
Indices: 36581392--36581559 Score: 266
Period size: 47 Copynumber: 3.6 Consensus size: 47
36581382 TATTTGAATA
*
36581392 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36581439 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36581486 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
36581533 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
36581560 TCCCGAAGGG
Statistics
Matches: 113, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.01
47 111 0.98
48 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36583488 original size:26 final size:25
Alignment explanation
Indices: 36583459--36583517 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
36583449 ATTTACTAAA
*
36583459 ATACCCTATGTATG-AAAATTACCATT
1 ATACCCTA-G-ATGCAAAATGACCATT
*
36583485 ATACCCCTAGGTGCAAAATGACCATT
1 ATA-CCCTAGATGCAAAATGACCATT
36583511 ATACCCT
1 ATACCCT
36583518 TAGGGTTGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 6 0.21
26 18 0.62
27 5 0.17
ACGTcount: A:0.36, C:0.25, G:0.10, T:0.29
Consensus pattern (25 bp):
ATACCCTAGATGCAAAATGACCATT
Found at i:36583664 original size:28 final size:28
Alignment explanation
Indices: 36583624--36583712 Score: 144
Period size: 28 Copynumber: 3.2 Consensus size: 28
36583614 GGAGGAAGCG
36583624 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
36583652 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
36583680 TTCTAGTGGCCCTGCCACAATTATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
36583707 TTCTGG
1 TTCTGG
36583713 CAGCCATGCT
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 5 0.09
28 52 0.91
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:36587147 original size:35 final size:35
Alignment explanation
Indices: 36587108--36587178 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
36587098 ATGCACATCA
36587108 TCTCTGTTCGTATTCATCAATTTACATCAAAAACT
1 TCTCTGTTCGTATTCATCAATTTACATCAAAAACT
36587143 TCTCTGTTCGTATTCATCAATTTACATCAAAAACT
1 TCTCTGTTCGTATTCATCAATTTACATCAAAAACT
36587178 T
1 T
36587179 GTACACAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.41
Consensus pattern (35 bp):
TCTCTGTTCGTATTCATCAATTTACATCAAAAACT
Found at i:36597390 original size:33 final size:33
Alignment explanation
Indices: 36597324--36597394 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
36597314 TAAATTTCCA
* * *
36597324 TTATAAATTAAGCTTGAGGTTATATTATTATTC
1 TTATAAATTAAGCCTGAAGTTATATTATCATTC
*
36597357 TTATACATTAAGCCTGAAGTTATATTGA-CATTC
1 TTATAAATTAAGCCTGAAGTTATATT-ATCATTC
36597390 TTATA
1 TTATA
36597395 GTTCAGGGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.45
Consensus pattern (33 bp):
TTATAAATTAAGCCTGAAGTTATATTATCATTC
Found at i:36599075 original size:70 final size:70
Alignment explanation
Indices: 36598924--36599081 Score: 174
Period size: 70 Copynumber: 2.2 Consensus size: 70
36598914 TATATAGCCA
* * * * * *
36598924 AATACACAAGGTTCATTATAATATCTCATATGGCCGAATATATAAGTTCAAATTATCATCACATG
1 AATATACAA-GTTCAATAAAATATCTCATATGGCCGAATATACAAATTCAAATTAACATCACATG
* *
36598989 TAACCT
65 AAACCG
* * * *
36598995 AATGTTCAAGTTCAATAAAATATCTCATATGGCCGAATATACAAATTC-AATATAACCTCATATG
1 AATATACAAGTTCAATAAAATATCTCATATGGCCGAATATACAAATTCAAAT-TAACATCACATG
*
36599059 AAATCG
65 AAACCG
36599065 AATATACAAGTTCAATA
1 AATATACAAGTTCAATA
36599082 TAACTTCACA
Statistics
Matches: 71, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
69 3 0.04
70 62 0.87
71 6 0.08
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.31
Consensus pattern (70 bp):
AATATACAAGTTCAATAAAATATCTCATATGGCCGAATATACAAATTCAAATTAACATCACATGA
AACCG
Found at i:36599102 original size:35 final size:35
Alignment explanation
Indices: 36599026--36599124 Score: 108
Period size: 35 Copynumber: 2.8 Consensus size: 35
36599016 ATCTCATATG
* *
36599026 GCCGAATATACAAATTCAATATAACCTCATATGAA
1 GCCGAATATACAAATTCAATATAACCTCACAAGAA
** * * *
36599061 ATCGAATATACAAGTTCAATATAACTTCACAAGCA
1 GCCGAATATACAAATTCAATATAACCTCACAAGAA
* * *
36599096 GCCGAATGTACAAACTCAATATGACCTCA
1 GCCGAATATACAAATTCAATATAACCTCA
36599125 AATGTACATA
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.24
Consensus pattern (35 bp):
GCCGAATATACAAATTCAATATAACCTCACAAGAA
Found at i:36606464 original size:13 final size:13
Alignment explanation
Indices: 36606446--36606473 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36606436 AAAAATGCAC
36606446 ACAGAGTAAGCCA
1 ACAGAGTAAGCCA
36606459 ACAGAGTAAGCCA
1 ACAGAGTAAGCCA
36606472 AC
1 AC
36606474 TTAGCTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.21, T:0.07
Consensus pattern (13 bp):
ACAGAGTAAGCCA
Found at i:36606843 original size:70 final size:70
Alignment explanation
Indices: 36606714--36606849 Score: 164
Period size: 70 Copynumber: 1.9 Consensus size: 70
36606704 TCATTATATT
** * * * * * *
36606714 ATCTCATATGGCCGAATATATGAGTTCAAAATATCATCACATGTAACCTAATGTTCAAGTTCAAT
1 ATCTCATATGGCCGAATATACAAATTCAAAATAACATCACATGAAACCGAATATACAAGTTCAAT
36606779 AAAAC
66 AAAAC
* * * *
36606784 ATCTCATATGGCCGAATATACAAATTCAATATAACCTCATATGAAATCGAATATACAAGTTCAAT
1 ATCTCATATGGCCGAATATACAAATTCAAAATAACATCACATGAAACCGAATATACAAGTTCAAT
36606849 A
66 A
36606850 GAACTTCACA
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
70 54 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.29
Consensus pattern (70 bp):
ATCTCATATGGCCGAATATACAAATTCAAAATAACATCACATGAAACCGAATATACAAGTTCAAT
AAAAC
Found at i:36615997 original size:39 final size:39
Alignment explanation
Indices: 36615784--36615981 Score: 315
Period size: 39 Copynumber: 5.1 Consensus size: 39
36615774 TGTGAATATA
* *
36615784 TATATGCGAGAATTATATCCGGACTTCAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
*
36615823 TATAAGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
* *
36615862 TATATGCGAGAGTTATATCTGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
* *
36615901 TATATGCGAGAATTATATCCGGACTTTATGTCCACAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
* *
36615940 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
36615979 TAT
1 TAT
36615982 GTGCTGGACA
Statistics
Matches: 147, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 147 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
Found at i:36624960 original size:30 final size:30
Alignment explanation
Indices: 36624924--36624981 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
36624914 ACAGTCGTGG
36624924 CACACGGCTGAGGCACACGACCGTGTCCTC
1 CACACGGCTGAGGCACACGACCGTGTCCTC
36624954 CACACGGCTGAGGCACACGACCGTGTCC
1 CACACGGCTGAGGCACACGACCGTGTCC
36624982 CTACCTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.21, C:0.40, G:0.28, T:0.12
Consensus pattern (30 bp):
CACACGGCTGAGGCACACGACCGTGTCCTC
Found at i:36625658 original size:31 final size:33
Alignment explanation
Indices: 36625617--36625681 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 33
36625607 TCTAAATTAA
*
36625617 TTAATTAGATAAATATTA-T-TTTATTAATATT
1 TTAATAAGATAAATATTATTATTTATTAATATT
** *
36625648 TTAATAAGATATTTATTATTATTTATTATTATT
1 TTAATAAGATAAATATTATTATTTATTAATATT
36625681 T
1 T
36625682 ATTTAGTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 15 0.54
32 1 0.04
33 12 0.43
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (33 bp):
TTAATAAGATAAATATTATTATTTATTAATATT
Found at i:36625672 original size:10 final size:10
Alignment explanation
Indices: 36625657--36625684 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
36625647 TTTAATAAGA
36625657 TATTTATTAT
1 TATTTATTAT
36625667 TATTTATTAT
1 TATTTATTAT
36625677 TATTTATT
1 TATTTATT
36625685 TAGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TATTTATTAT
Found at i:36627378 original size:33 final size:32
Alignment explanation
Indices: 36627341--36627444 Score: 138
Period size: 33 Copynumber: 3.2 Consensus size: 32
36627331 TACCTAAAAG
*
36627341 GTACAACTGGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACACT-TGTGT
* *
36627374 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACAC-TTGTGT
*
36627407 GTACAA-TTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-ACTTGTGT
36627439 GTACAA
1 GTACAA
36627445 TGTAAAAAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
32 27 0.43
33 35 0.56
34 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (32 bp):
GTACAACTTGAAAAGGAAATGTACACTTGTGT
Found at i:36627521 original size:31 final size:31
Alignment explanation
Indices: 36627449--36627554 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
36627439 GTACAATGTA
* *
36627449 AAAAGTGGTAGCTTCGGCTACCTGATCATTG
1 AAAAGTGGTAGCTTCGGCTACCTGATTAATG
*
36627480 -AAAGTAGTAGCTTCGGCTACCTGATTAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATTAATG
* * *
36627510 AAAAGTGGTAGCTCCAGCTACCTGATTAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATTAATG
*
36627541 AATAGTGGTAGCTT
1 AAAAGTGGTAGCTT
36627555 TAGCTACAAG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
30 27 0.42
31 38 0.58
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATTAATG
Found at i:36627696 original size:27 final size:27
Alignment explanation
Indices: 36627651--36627702 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
36627641 TAGTTGAACT
*
36627651 ATGGCAAATTAATAAAGTGTGCCAATG
1 ATGGCAAAGTAATAAAGTGTGCCAATG
* *
36627678 ATGGCAAAGTGATATAGTGTGCCAA
1 ATGGCAAAGTAATAAAGTGTGCCAA
36627703 ACATAGCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (27 bp):
ATGGCAAAGTAATAAAGTGTGCCAATG
Found at i:36630262 original size:26 final size:27
Alignment explanation
Indices: 36630226--36630278 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
36630216 TGTCAGCTAG
* *
36630226 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
36630252 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
36630279 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:36631616 original size:48 final size:49
Alignment explanation
Indices: 36631551--36631696 Score: 194
Period size: 48 Copynumber: 3.0 Consensus size: 49
36631541 TGTACAAGAT
36631551 ATATATATATGTGGTAAAG-CAGAATGGCTAATGT-AAAGTATGTATGAG
1 ATATATATATGTGGTAAAGCCAGAATGGCTAATGTGAAA-TATGTATGAG
* * *
36631599 ATATATATATCTGGTAAAGTC-GAAAGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCAGAATGGCTAATGTGAAATATGTATGAG
**
36631647 -TCATGCATATGTGGTAAAGCCA-AATGGCTAATGTGAAATATGTATGAG
1 AT-ATATATATGTGGTAAAGCCAGAATGGCTAATGTGAAATATGTATGAG
36631695 AT
1 AT
36631697 GTGTATATAT
Statistics
Matches: 86, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
47 1 0.01
48 80 0.93
49 5 0.06
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (49 bp):
ATATATATATGTGGTAAAGCCAGAATGGCTAATGTGAAATATGTATGAG
Found at i:36634087 original size:47 final size:49
Alignment explanation
Indices: 36634018--36634116 Score: 184
Period size: 47 Copynumber: 2.1 Consensus size: 49
36634008 GACCAACAGT
36634018 GAAAATATTTTAAGGGCAAAATGGTCAATTAGT-A-AGAGAGAATTCTA
1 GAAAATATTTTAAGGGCAAAATGGTCAATTAGTAAGAGAGAGAATTCTA
36634065 GAAAATATTTTAAGGGCAAAATGGTCAATTAGTAAGAGAGAGAATTCTA
1 GAAAATATTTTAAGGGCAAAATGGTCAATTAGTAAGAGAGAGAATTCTA
36634114 GAA
1 GAA
36634117 TGTAATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 33 0.66
48 1 0.02
49 16 0.32
ACGTcount: A:0.45, C:0.06, G:0.22, T:0.26
Consensus pattern (49 bp):
GAAAATATTTTAAGGGCAAAATGGTCAATTAGTAAGAGAGAGAATTCTA
Found at i:36634779 original size:23 final size:22
Alignment explanation
Indices: 36634740--36634782 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
36634730 AAAAATTGTG
36634740 AAAATTGAATTAGAATTTTAAT
1 AAAATTGAATTAGAATTTTAAT
36634762 AAAATATGAAATTA-AATTTTA
1 AAAAT-TG-AATTAGAATTTTA
36634783 CTGAGTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 9 0.47
24 5 0.26
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (22 bp):
AAAATTGAATTAGAATTTTAAT
Found at i:36635930 original size:32 final size:32
Alignment explanation
Indices: 36635902--36635981 Score: 97
Period size: 33 Copynumber: 2.5 Consensus size: 32
36635892 AGGTACACGG
36635902 GAAAAGGAAATGTACACTGTGTATGTACAACTT
1 GAAAAGGAAATGTACACTGTGTATGTAC-ACTT
* * * * *
36635935 AAAAAGGAAACGTGCACTTTGTGTGTACACTT
1 GAAAAGGAAATGTACACTGTGTATGTACACTT
*
36635967 GAAAAGGAATTGTAC
1 GAAAAGGAAATGTAC
36635982 GCCTTGTGTG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
32 15 0.39
33 23 0.61
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (32 bp):
GAAAAGGAAATGTACACTGTGTATGTACACTT
Found at i:36636036 original size:31 final size:31
Alignment explanation
Indices: 36635999--36636145 Score: 188
Period size: 31 Copynumber: 4.7 Consensus size: 31
36635989 GTGTACAATG
* *
36635999 TGAAAAGTGGTAGCTTTAGCTACTTGATTAA
1 TGAAAAGTGGTAGCTTCAGCTACCTGATTAA
*
36636030 TGAAAAGTGGTAGCTTCAGCTACCTGATTAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATTAA
* *
36636061 TGAAAAGTAGTAGCTTC-GACTACCTAATTAA
1 TGAAAAGTGGTAGCTTCAG-CTACCTGATTAA
* * *
36636092 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATTAA
* *
36636123 TGAATAGTGGTAGCTTCGGCTAC
1 TGAAAAGTGGTAGCTTCAGCTAC
36636146 AAGTGATAAG
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
30 1 0.01
31 98 0.98
32 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATTAA
Found at i:36636139 original size:62 final size:62
Alignment explanation
Indices: 36635998--36636145 Score: 208
Period size: 62 Copynumber: 2.4 Consensus size: 62
36635988 TGTGTACAAT
* * * * *
36635998 GTGAAAAGTGGTAGCTT-TAGCTACTTGATTAATGAAAAGTGGTAGCTTCAGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGA-CTACCTAATTAATGAAAAGTGGTAGCTCCAGCTACCTGATCA
*
36636060 GTGAAAAGTAGTAGCTTCGACTACCTAATTAATGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGACTACCTAATTAATGAAAAGTGGTAGCTCCAGCTACCTGATCA
* *
36636122 GTGAATAGTGGTAGCTTCGGCTAC
1 GTGAAAAGTGGTAGCTTCGACTAC
36636146 AAGTGATAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
62 75 0.99
63 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (62 bp):
GTGAAAAGTGGTAGCTTCGACTACCTAATTAATGAAAAGTGGTAGCTCCAGCTACCTGATCA
Found at i:36636266 original size:27 final size:27
Alignment explanation
Indices: 36636235--36636286 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
36636225 TAGTTGAACT
*
36636235 ATGGCAAAGTGATAAAGTGTGCCAATA
1 ATGGCAAAGTGATAAACTGTGCCAATA
*
36636262 ATGGCAAAGTGATATACTGTGCCAA
1 ATGGCAAAGTGATAAACTGTGCCAA
36636287 ACATAGCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.23
Consensus pattern (27 bp):
ATGGCAAAGTGATAAACTGTGCCAATA
Found at i:36636295 original size:27 final size:27
Alignment explanation
Indices: 36636238--36636296 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
36636228 TTGAACTATG
* *
36636238 GCAAAGTGATAAAGTGTGCCAATAATG
1 GCAAAGTGATAAACTGTGCCAATAATA
*
36636265 GCAAAGTGATATACTGTGCCAA-ACATA
1 GCAAAGTGATAAACTGTGCCAATA-ATA
36636292 GCAAA
1 GCAAA
36636297 CTGTTCAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.20
Consensus pattern (27 bp):
GCAAAGTGATAAACTGTGCCAATAATA
Found at i:36638170 original size:44 final size:45
Alignment explanation
Indices: 36638102--36638223 Score: 140
Period size: 46 Copynumber: 2.7 Consensus size: 45
36638092 GCATAACTGT
* * *
36638102 GCCGATGCCATGTCCTAGATATGTCTTACACTGAC-ACATCTTGTA-
1 GCCGATG-CATGTCCCAGACATGTCTTACACTGACTACATCCTG-AG
* * **
36638147 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCCTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC-TACATCCTGAG
36638193 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
36638224 AGCACTTGTA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
44 23 0.35
45 8 0.12
46 35 0.53
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTACATCCTGAG
Found at i:36639157 original size:56 final size:56
Alignment explanation
Indices: 36639086--36639193 Score: 171
Period size: 56 Copynumber: 1.9 Consensus size: 56
36639076 TGCAAGTGCT
* *
36639086 TCAAGTTGCTGAAAAATTTAAGCTTTCAAACCCCCTTTCATAGCTGATATTTCTAG
1 TCAAGTTGCTAAAAAATTTAAGCTTTCAAACCCCATTTCATAGCTGATATTTCTAG
* * *
36639142 TCAAGTTGCTAAAAAATTTAATCTTTCAAACCCTATTTCATGGCTGATATTT
1 TCAAGTTGCTAAAAAATTTAAGCTTTCAAACCCCATTTCATAGCTGATATTT
36639194 TCGATGGAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.38
Consensus pattern (56 bp):
TCAAGTTGCTAAAAAATTTAAGCTTTCAAACCCCATTTCATAGCTGATATTTCTAG
Found at i:36648832 original size:48 final size:48
Alignment explanation
Indices: 36648770--36649770 Score: 1750
Period size: 48 Copynumber: 20.9 Consensus size: 48
36648760 TATATATGTG
* *
36648770 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTACA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
36648818 TGTGGTAAAGCCGAATGACTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
36648866 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTACA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
36648914 TGTGGTAAAGCCGAATGACTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
36648962 TGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
36649010 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
36649058 TGTGGTAAAGCTGAATGACTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
36649106 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
36649154 TGTGGTAAAGCTGAATGACTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
**
36649202 TGTGGTAAAGCCGAATGGCTAGGGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36649250 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36649298 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36649346 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36649394 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36649442 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
36649490 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
36649538 TGTGGTAAAGCCGAATGACTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36649586 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36649634 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36649682 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
36649730 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
36649771 GTGTGTATAT
Statistics
Matches: 907, Mismatches: 46, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 907 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:36649961 original size:37 final size:37
Alignment explanation
Indices: 36649911--36650013 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
36649901 GGAAATATAT
36649911 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36649948 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36649985 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
36650014 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36656010 original size:18 final size:18
Alignment explanation
Indices: 36655983--36656018 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
36655973 AACTGGCCTA
36655983 ATACGCTCAAT-AATCTC
1 ATACGCTCAATAAATCTC
36656000 ATACAGCTCAATAAATCTC
1 ATAC-GCTCAATAAATCTC
36656019 GGACTCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.28
Consensus pattern (18 bp):
ATACGCTCAATAAATCTC
Found at i:36658315 original size:38 final size:38
Alignment explanation
Indices: 36658264--36658340 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
36658254 GAGAACACAA
36658264 CACCGTAAAATATCTTCTAAAATCTGAATCACTCTTTC
1 CACCGTAAAATATCTTCTAAAATCTGAATCACTCTTTC
*
36658302 CACCGTAAAATATCTTCTAAAATCTGAATCTCTCTTTC
1 CACCGTAAAATATCTTCTAAAATCTGAATCACTCTTTC
36658340 C
1 C
36658341 GACTAACTGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (38 bp):
CACCGTAAAATATCTTCTAAAATCTGAATCACTCTTTC
Found at i:36663706 original size:47 final size:47
Alignment explanation
Indices: 36663615--36663737 Score: 137
Period size: 47 Copynumber: 2.6 Consensus size: 47
36663605 AGGGTAAGGT
* * *
36663615 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCA-A
1 GCCGATGCCATGTCC-AGACATGGTCTTACACTGACTCACATCTCACA
*
36663662 GTCGATGCCATGTCTCAGACATGGTCTTACACTGACT-ACCATCTCACA
1 GCCGATGCCATGTC-CAGACATGGTCTTACACTGACTCA-CATCTCACA
*
36663710 GCCAATG-CATGTCCCAGACAT-GTCTTAC
1 GCCGATGCCATGT-CCAGACATGGTCTTAC
36663738 TTTGGCTGTA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
46 8 0.12
47 50 0.76
48 8 0.12
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCAGACATGGTCTTACACTGACTCACATCTCACA
Found at i:36665395 original size:68 final size:67
Alignment explanation
Indices: 36665323--36665472 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
36665313 CATCATGTGT
* * * *
36665323 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
36665385 ATGTAG
62 ATGTAG
** * *
36665391 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
36665456 AG
66 AG
36665458 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
36665473 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:36665428 original size:64 final size:64
Alignment explanation
Indices: 36665347--36665530 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
36665337 AGACATTATG
* *
36665347 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
36665411 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36665476 AA
63 AA
* * * *
36665478 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
36665531 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:36669874 original size:64 final size:64
Alignment explanation
Indices: 36669794--36669977 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
36669784 AGACATTATG
* *
36669794 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTTGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTTGACAAGAGAGCTACGAGATAA
* * * * * * *
36669858 ATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTTGACAAGAGAGCTACGAGAT
36669923 AA
63 AA
* * * *
36669925 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATG-TGTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTTG-ACAAGAGAGC
36669978 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTTGACAAGAGAGCTACGAGATAA
Found at i:36671857 original size:48 final size:46
Alignment explanation
Indices: 36671768--36671899 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 46
36671758 TTATGTCTCG
* * **
36671768 AGGCCAATGCATGTCCCAGACATGTCTTACACTAGCCCTCATCTTA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATA
* * *
36671814 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATG
1 AGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATA
*
36671862 CGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
36671900 ACACACAAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 21 0.28
47 28 0.38
48 25 0.34
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (46 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATA
Found at i:36686229 original size:40 final size:40
Alignment explanation
Indices: 36686155--36686231 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
36686145 CTTAGGTTCT
* * *
36686155 TTTTTTAGATTTAGTTTCATTTTTTTCTTTCTTTCTTAGG
1 TTTTTCAGATTTAGTTTCATTTTGTTCTTGCTTTCTTAGG
36686195 TTTTTCAGAGTTTAGTTT-A-TTTGTTCGTTGCTTTCTT
1 TTTTTCAGA-TTTAGTTTCATTTTGTTC-TTGCTTTCTT
36686232 TCAAGAGATC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 6 0.19
40 18 0.56
41 8 0.25
ACGTcount: A:0.12, C:0.10, G:0.13, T:0.65
Consensus pattern (40 bp):
TTTTTCAGATTTAGTTTCATTTTGTTCTTGCTTTCTTAGG
Found at i:36688131 original size:41 final size:41
Alignment explanation
Indices: 36688047--36688185 Score: 181
Period size: 41 Copynumber: 3.4 Consensus size: 41
36688037 AAAACGCCGT
* * *
36688047 AAAGGTAAAGCATTAGTGGCGTTTTT-GCATAAACACCGCA
1 AAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACACCGCA
* * *
36688087 AAAGGTAAAGCAATAGCGACATTTTTCTCATAAACACCACA
1 AAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACACCGCA
* *
36688128 AAAGGTAAAGCAATAACGGTGTTTTTCTCATAAACACACCGCA
1 AAAGGTAAAGCAATAGCGGCGTTTTTCTCAT-AA-ACACCGCA
36688171 AAAGGTAAAGCAATA
1 AAAGGTAAAGCAATA
36688186 AATGCCGCAA
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
40 22 0.26
41 39 0.46
42 2 0.02
43 22 0.26
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (41 bp):
AAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACACCGCA
Found at i:36693043 original size:40 final size:40
Alignment explanation
Indices: 36692984--36693071 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
36692974 TGGATGATAA
* * *
36692984 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CCGGGCTAAGTCCCAAAGGCAGTTGAGCGAG-TAGCTATAT
36693024 CCGGGCTAAGTCCCAAAGGCAGTTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCAAAGGCAGTTGAGCGAGTAGCTATAT
36693064 CC-GGCTAA
1 CCGGGCTAA
36693072 ATCCTGAAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 8 0.18
40 36 0.82
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCAAAGGCAGTTGAGCGAGTAGCTATAT
Found at i:36704221 original size:29 final size:27
Alignment explanation
Indices: 36704203--36704272 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36704193 ATTTTAAGTC
36704203 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
36704230 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
36704258 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
36704273 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:36704266 original size:28 final size:28
Alignment explanation
Indices: 36704203--36704300 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
36704193 ATTTTAAGTC
*
36704203 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
36704230 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36704258 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36704287 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36704301 CAATCTCAGG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36716975 original size:40 final size:40
Alignment explanation
Indices: 36716908--36717084 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
36716898 ACCCAAGTAT
*
36716908 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
36716947 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
36716987 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
36717027 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
36717067 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
36717085 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:36725020 original size:40 final size:40
Alignment explanation
Indices: 36724943--36725079 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 40
36724933 ACCCAAGTAT
36724943 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
36724982 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * *
36725022 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
36725062 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
36725080 TTATCATCCG
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.15
40 68 0.83
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:36727302 original size:27 final size:27
Alignment explanation
Indices: 36727272--36727449 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36727262 ATATTGAGTC
* * * *
36727272 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36727299 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36727326 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36727354 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36727381 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36727408 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36727435 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36727450 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36727411 original size:82 final size:81
Alignment explanation
Indices: 36727293--36727448 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36727283 TGCTATATAA
* *
36727293 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36727358 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36727375 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36727439 CACTTAGTGC
65 CACTTAGTGC
36727449 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36729281 original size:41 final size:41
Alignment explanation
Indices: 36729224--36729304 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
36729214 ACTCAGTAAT
36729224 ATTCAAAATCATATTCGGCCTTAGTACACACTTGTTAGCCG
1 ATTCAAAATCATATTCGGCCTTAGTACACACTTGTTAGCCG
*
36729265 ATTCAAAATCATATTCGGCCTTAGTACTCACTTGTTAGCC
1 ATTCAAAATCATATTCGGCCTTAGTACACACTTGTTAGCC
36729305 TATTTTTCTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (41 bp):
ATTCAAAATCATATTCGGCCTTAGTACACACTTGTTAGCCG
Found at i:36729778 original size:47 final size:47
Alignment explanation
Indices: 36729724--36729816 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
36729714 AATACATTAT
*
36729724 TTTATTGTTATTACCCATCACATTTTGTCTATCCTCATTTTCATGGC
1 TTTATTGTTATTACCCATCACATTTTGTCTATCCTCATTGTCATGGC
36729771 TTTATTGTTATTACCCATCACATTTTGTCTATCCTCATTGTCATGG
1 TTTATTGTTATTACCCATCACATTTTGTCTATCCTCATTGTCATGG
36729817 TCGGCCACTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.19, C:0.23, G:0.10, T:0.48
Consensus pattern (47 bp):
TTTATTGTTATTACCCATCACATTTTGTCTATCCTCATTGTCATGGC
Found at i:36732781 original size:27 final size:27
Alignment explanation
Indices: 36732751--36732947 Score: 268
Period size: 27 Copynumber: 7.3 Consensus size: 27
36732741 TACTGAAATG
* * *
36732751 CCCTCGATTTGTAGAATTACCACTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
36732778 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTA
*
36732805 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
36732832 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
36732859 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
36732886 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * * *
36732913 CCTTCAATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
36732940 CCCTCGAT
1 CCCTCGAT
36732948 GTGAAATTAC
Statistics
Matches: 150, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:36732823 original size:54 final size:54
Alignment explanation
Indices: 36732751--36732947 Score: 295
Period size: 54 Copynumber: 3.6 Consensus size: 54
36732741 TACTGAAATG
** * * * *
36732751 CCCTCGATTTGTAGAATTACCACTTTACCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
36732805 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
*
36732859 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
* * * *
36732913 CCTTCAATTTACAAAATTATCGTTTTACCCTCGAT
1 CCCTCGATTTACAAAATTACCATTTTACCCTCGAT
36732948 GTGAAATTAC
Statistics
Matches: 132, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 132 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
Found at i:36733008 original size:27 final size:26
Alignment explanation
Indices: 36732978--36733101 Score: 176
Period size: 27 Copynumber: 4.6 Consensus size: 26
36732968 TGTAGGATAG
36732978 AATTACCAAAATAACCCTAGTTTGTAA
1 AATTACCAAAAT-ACCCTAGTTTGTAA
36733005 AATTACCAAAATACTCCTAGTTTGTAA
1 AATTACCAAAATAC-CCTAGTTTGTAA
* *
36733032 AATTACCAAAATACCACTAGTTTATGA
1 AATTACCAAAATACC-CTAGTTTGTAA
* *
36733059 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AGTTTGTAA
36733086 AATTACCAAAATACCC
1 AATTACCAAAATACCC
36733102 CTGATTTACA
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
26 5 0.06
27 82 0.94
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:36733108 original size:27 final size:27
Alignment explanation
Indices: 36732978--36733128 Score: 173
Period size: 27 Copynumber: 5.6 Consensus size: 27
36732968 TGTAGGATAG
*
36732978 AATTACCAAAATAACCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
36733005 AATTACCAAAATACTCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
36733032 AATTACCAAAATACCACTAGTTTATGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
36733059 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
36733086 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
36733113 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
36733129 TTGACTTTCT
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.05
27 96 0.91
28 4 0.04
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:36733115 original size:81 final size:81
Alignment explanation
Indices: 36732978--36733127 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 81
36732968 TGTAGGATAG
* * **
36732978 AATTACCAAAATAACCCTAGTTTGTAAAATTACCAAAATACTCCTAGTTTGTAAAATTACCA-AA
1 AATTACCAAAATAACCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA-CAGAA
36733042 ATACCACTAGTTTATGA
65 ATACCACTAGTTTATGA
*
36733059 AATTACCGAAAT-ACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAGA
1 AATTACCAAAATAACCCT-AATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAGA
36733122 AATACC
64 AATACC
36733128 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
80 8 0.13
81 53 0.87
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATAACCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAA
TACCACTAGTTTATGA
Found at i:36733179 original size:27 final size:27
Alignment explanation
Indices: 36733084--36733191 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
36733074 CTCAATTTGT
** * *
36733084 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
36733111 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
36733138 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
36733167 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
36733192 GTAGATTTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
27 41 0.61
28 7 0.10
29 19 0.28
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:36733309 original size:27 final size:27
Alignment explanation
Indices: 36733232--36733309 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
36733222 AAATGACTAA
* *
36733232 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
36733259 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
36733286 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
36733310 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:36734189 original size:52 final size:52
Alignment explanation
Indices: 36734111--36734284 Score: 273
Period size: 52 Copynumber: 3.4 Consensus size: 52
36734101 GAGGAAGTGC
36734111 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
36734163 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* ** * *
36734215 -AAAGGGCTTAAGTTCTAGTTTATTGAAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
36734265 AAAAGAGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
36734285 ATTAAATAGG
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
50 20 0.18
51 39 0.35
52 52 0.47
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:36734224 original size:25 final size:26
Alignment explanation
Indices: 36734111--36734284 Score: 219
Period size: 26 Copynumber: 6.8 Consensus size: 26
36734101 GAGGAAGTGC
**
36734111 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
36734137 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
36734163 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
36734189 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* ** * **
36734215 -AAAGGGCTTAAGTTCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
36734240 AAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
36734265 AAAAGAGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
36734285 ATTAAATAGG
Statistics
Matches: 128, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
25 47 0.37
26 81 0.63
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:36734488 original size:42 final size:42
Alignment explanation
Indices: 36734429--36734520 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
36734419 TAGTCTCCCC
* ** *
36734429 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
36734471 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
36734513 AAATGGGC
1 AAATGGGC
36734521 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:36734579 original size:31 final size:31
Alignment explanation
Indices: 36734544--36734622 Score: 158
Period size: 31 Copynumber: 2.5 Consensus size: 31
36734534 CGTTTACAGT
36734544 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
36734575 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
36734606 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
36734623 AACCGTTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:36749745 original size:43 final size:43
Alignment explanation
Indices: 36749698--36749849 Score: 152
Period size: 43 Copynumber: 3.5 Consensus size: 43
36749688 TCCCAGATGT
* *
36749698 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAA
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAA
* *
36749741 GGTCTTACACAAAATCAAATA-CGATGTCGA-TGTCCCAGACATA
1 GGTCTTACACGAAATCAAATATCGATG-CCACTGTCCCAGACA-A
* **
36749784 -GTCTTACACGTAAATCACAA-ATCGATGCCAAC-GTCCTAGACGT
1 GGTCTTACACG-AAATCA-AATATCGATGCC-ACTGTCCCAGACAA
*
36749827 GGTCTTACACGAAATCACATATC
1 GGTCTTACACGAAATCAAATATC
36749850 AGAATCCTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 18
0.76 0.08 0.15
Matches are distributed among these distances:
42 26 0.29
43 38 0.42
44 26 0.29
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAA
Found at i:36752476 original size:39 final size:39
Alignment explanation
Indices: 36752417--36752573 Score: 260
Period size: 39 Copynumber: 4.0 Consensus size: 39
36752407 AATTATATTA
*
36752417 CCAACACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
36752456 CCAACACGAAGCCTGTGGGACTTTAGCCCAGATACATTT
1 CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
36752495 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
36752534 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
36752573 C
1 C
36752574 TAGTGTCTTG
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (39 bp):
CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:36767064 original size:20 final size:21
Alignment explanation
Indices: 36767041--36767081 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
36767031 TGTTTTTATT
*
36767041 TTTCCTTTTTTTTAT-TTCTA
1 TTTCCATTTTTTTATGTTCTA
36767061 TTTCCATTTTTTTATGTTCTA
1 TTTCCATTTTTTTATGTTCTA
36767082 AAAAGACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.12, C:0.15, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTCCATTTTTTTATGTTCTA
Found at i:36769165 original size:30 final size:30
Alignment explanation
Indices: 36769130--36769187 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36769120 TAGGCACTAC
* *
36769130 CACACGGGCAATCCACACGCTCGTGTGTGA
1 CACACGAGCAAGCCACACGCTCGTGTGTGA
*
36769160 CACACGAGCAGGCCACACGCTCGTGTGT
1 CACACGAGCAAGCCACACGCTCGTGTGT
36769188 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.34, G:0.28, T:0.16
Consensus pattern (30 bp):
CACACGAGCAAGCCACACGCTCGTGTGTGA
Found at i:36769477 original size:11 final size:11
Alignment explanation
Indices: 36769461--36769502 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
36769451 ATCTCCACTC
36769461 AATTTCTTTAG
1 AATTTCTTTAG
36769472 AATTTCTTTAG
1 AATTTCTTTAG
*
36769483 AAGTTCTTTAG
1 AATTTCTTTAG
*
36769494 -GTTTCTTTA
1 AATTTCTTTA
36769503 TGTTTTGTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 7 0.25
11 21 0.75
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.55
Consensus pattern (11 bp):
AATTTCTTTAG
Found at i:36771739 original size:28 final size:26
Alignment explanation
Indices: 36771699--36771773 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 26
36771689 AATGTGATTG
*
36771699 GGCCTAATGGCCATATGAATTTAATTAA
1 GGCCTAATGGCCATATGAATGTAA--AA
* * *
36771727 GGCCTAATGGCCACATAAATGTGAAA
1 GGCCTAATGGCCATATGAATGTAAAA
36771753 GGACCTAATGGGCCATATGAA
1 GG-CCTAAT-GGCCATATGAA
36771774 AGAGATTGGG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 4 0.10
27 6 0.15
28 29 0.74
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (26 bp):
GGCCTAATGGCCATATGAATGTAAAA
Found at i:36772715 original size:9 final size:9
Alignment explanation
Indices: 36772699--36772741 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
36772689 GGTATTTTTC
36772699 GGTAATTCG
1 GGTAATTCG
*
36772708 GTTAATTCG
1 GGTAATTCG
36772717 GGTAATTCG
1 GGTAATTCG
36772726 GGTAATTCG
1 GGTAATTCG
*
36772735 GATAATT
1 GGTAATT
36772742 TTTAACCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.37
Consensus pattern (9 bp):
GGTAATTCG
Found at i:36772918 original size:12 final size:12
Alignment explanation
Indices: 36772901--36772925 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36772891 AGTAATTTCA
36772901 GGTCGGTTAACC
1 GGTCGGTTAACC
36772913 GGTCGGTTAACC
1 GGTCGGTTAACC
36772925 G
1 G
36772926 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:36776705 original size:18 final size:19
Alignment explanation
Indices: 36776667--36776707 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36776657 GTTGTGAATT
36776667 GGCTAAACGGGCCGAAATG
1 GGCTAAACGGGCCGAAATG
* *
36776686 GGCTAAATGGGCC-CAATG
1 GGCTAAACGGGCCGAAATG
36776704 GGCT
1 GGCT
36776708 GTGGGCCCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.27, C:0.22, G:0.37, T:0.15
Consensus pattern (19 bp):
GGCTAAACGGGCCGAAATG
Found at i:36776884 original size:56 final size:56
Alignment explanation
Indices: 36776776--36776886 Score: 134
Period size: 56 Copynumber: 2.0 Consensus size: 56
36776766 GAGCATGACT
** * * *
36776776 ATAAATGTGATTGGGCCTAATGGACGTATGAATGTGATTTGGCCCTAATGGGCCAC
1 ATAAATGTGAAAGGGCCTAATGGACATATGAAAGAGATTTGGCCCTAATGGGCCAC
* * *
36776832 ATAAATGTGAAAGGGCCTAATAGGCCATATGAAAGAGA-TTGGGCCTAGTGGGCCA
1 ATAAATGTGAAAGGGCCTAAT-GGACATATGAAAGAGATTTGGCCCTAATGGGCCA
36776887 TTTATATATA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
56 34 0.74
57 12 0.26
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (56 bp):
ATAAATGTGAAAGGGCCTAATGGACATATGAAAGAGATTTGGCCCTAATGGGCCAC
Found at i:36780524 original size:31 final size:31
Alignment explanation
Indices: 36780481--36780564 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
36780471 TTAGTCTTGA
36780481 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
36780511 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
36780542 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
36780565 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:36780635 original size:42 final size:42
Alignment explanation
Indices: 36780588--36780679 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
36780578 TGGCCCTTAG
* * *
36780588 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
36780630 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
36780672 GCCCATTT
1 GCCCATTT
36780680 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
Found at i:36780878 original size:25 final size:26
Alignment explanation
Indices: 36780827--36780896 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 26
36780817 CTCTTTTAAT
*
36780827 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTCTGATA
* *
36780852 AACTGGGGCAGGGCCCTTTTC-GGTA
1 AACTGGGGCAGAGCCCTTTTCTGATA
* *
36780877 AACTAGGACAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
36780897 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (26 bp):
AACTGGGGCAGAGCCCTTTTCTGATA
Found at i:36781848 original size:27 final size:27
Alignment explanation
Indices: 36781818--36781869 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
36781808 GTAAATCTAC
36781818 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
36781845 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAGGGTATTTCTATAATTTT
36781870 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:36781968 original size:54 final size:54
Alignment explanation
Indices: 36781909--36782064 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 54
36781899 GTAAATCAGA
* *
36781909 GGTATTTTGGTAATTTTACAAA-TTGAAGGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAG-AGGTATTTCGGTAATTTCACAAACCAGG
* * * * *
36781963 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGGTAATTTCACAAACCAGG
* ** * *
36782017 GGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 GGTATTTTGGTAATTTTA-CAAACTAGAGGTATTTCGGTAATTTCACAA
36782065 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 81 0.94
55 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACTAGAGGTATTTCGGTAATTTCACAAACCAGG
Found at i:36782048 original size:81 final size:81
Alignment explanation
Indices: 36781909--36782064 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
36781899 GTAAATCAGA
* * *
36781909 GGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGT
1 GGTATTTTGGTAATTTTACAAATAGAAGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGT
*
36781974 AATTTTACAAACTAGG
66 AATTTCACAAACTAGG
* * **
36781990 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCTA-CAGGGGTATTTC
1 GGTATTTTGGTAATTTTACAAA-TAGAAGGTATTTCGGTAATTTC-A-CAAACCAGGGGTATTTC
36782052 AGTAATTTCACAA
63 AGTAATTTCACAA
36782065 TCGAGGGTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 3 0.05
81 57 0.89
82 4 0.06
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATAGAAGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGT
AATTTCACAAACTAGG
Found at i:36782071 original size:27 final size:27
Alignment explanation
Indices: 36781909--36782064 Score: 147
Period size: 27 Copynumber: 5.8 Consensus size: 27
36781899 GTAAATCAGA
* * * *
36781909 GGTATTTTGGTAATTTTACAAA-TTGAA
1 GGTATTTCGGTAATTTCACAAACTAG-G
* *
36781936 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTCGGTAATTTCACAAACTAGG
*
36781963 GGTATTTCGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTCACAAACTAGG
* *
36781990 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTCACAAACTAGG
* **
36782017 GGTATTTTGGTAA-TTCTATCCTAC-AGG
1 GGTATTTCGGTAATTTC-A-CAAACTAGG
*
36782044 GGTATTTCAGTAATTTCACAA
1 GGTATTTCGGTAATTTCACAA
36782065 TCGAGGGTAA
Statistics
Matches: 109, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.03
27 99 0.91
28 7 0.06
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTCACAAACTAGG
Found at i:36782093 original size:27 final size:27
Alignment explanation
Indices: 36782063--36782260 Score: 297
Period size: 27 Copynumber: 7.3 Consensus size: 27
36782053 GTAATTTCAC
*
36782063 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
36782090 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
36782117 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
36782144 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
36782171 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
36782198 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
36782225 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
36782252 AATCGAGGG
1 AATCGAGGG
36782261 CATTTCAGTA
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 157 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:36782173 original size:81 final size:81
Alignment explanation
Indices: 36782063--36782260 Score: 333
Period size: 81 Copynumber: 2.4 Consensus size: 81
36782053 GTAATTTCAC
* * * *
36782063 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
*
36782128 AAACGGTAATTCTGTA
66 AAACGGTAATTCTATA
*
36782144 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
36782209 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
*
36782225 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
36782261 CATTTCAGTA
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 110 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:36810027 original size:42 final size:43
Alignment explanation
Indices: 36809927--36810083 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
36809917 ATCTAGTACA
* *
36809927 ATGCCAACATCCCAGGCGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACATGAAATCAAATATCG
*
36809970 ATG-CTACTATCCCAGACAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACATGAAATCAAATATCG
* * *
36810012 ATGCCAACGTCCCAGACGTGGTCTTACACGCAAAT--AATAAGTCA
1 ATGCCAACATCCCAGACGTGGTCTTACATG-AAATCAAAT-A-TCG
* * *
36810056 ATGCCAACGTCTCAGACGTGGTTTTACA
1 ATGCCAACATCCCAGACGTGGTCTTACA
36810084 CGATAACATA
Statistics
Matches: 97, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
41 4 0.04
42 27 0.28
43 38 0.39
44 28 0.29
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACATGAAATCAAATATCG
Found at i:36812137 original size:14 final size:14
Alignment explanation
Indices: 36812075--36812138 Score: 51
Period size: 13 Copynumber: 4.5 Consensus size: 14
36812065 AATAACATTA
36812075 TAAAATAT-AAAAT
1 TAAAATATCAAAAT
*
36812088 TAAATTATGTTCAAAAT
1 TAAA--AT-ATCAAAAT
*
36812105 TAAAATATAAAAAT
1 TAAAATATCAAAAT
* *
36812119 T-AAATCTCAAATT
1 TAAAATATCAAAAT
36812132 TAAAATA
1 TAAAATA
36812139 ATAGAGAGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
13 14 0.36
14 11 0.28
15 4 0.10
16 1 0.03
17 9 0.23
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (14 bp):
TAAAATATCAAAAT
Found at i:36816447 original size:25 final size:25
Alignment explanation
Indices: 36816419--36816468 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
36816409 TCTACTAGAA
36816419 ATTTTATGTCCTAACACAATACTTT
1 ATTTTATGTCCTAACACAATACTTT
*
36816444 ATTTTATGTTCTAACACAATACTTT
1 ATTTTATGTCCTAACACAATACTTT
36816469 CTTGAACCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.32, C:0.18, G:0.04, T:0.46
Consensus pattern (25 bp):
ATTTTATGTCCTAACACAATACTTT
Found at i:36827762 original size:12 final size:12
Alignment explanation
Indices: 36827745--36827774 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36827735 TCAGTGAGTT
36827745 ACATGGGCAAGG
1 ACATGGGCAAGG
*
36827757 ACATGGGCTAGG
1 ACATGGGCAAGG
36827769 ACATGG
1 ACATGG
36827775 CCGTTTGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.40, T:0.13
Consensus pattern (12 bp):
ACATGGGCAAGG
Found at i:36831965 original size:85 final size:84
Alignment explanation
Indices: 36831843--36831997 Score: 229
Period size: 85 Copynumber: 1.8 Consensus size: 84
36831833 GAGACTATGT
* * * *
36831843 GTAAGACCATAACTAGGTTATGGCATCAATATGAGATTATGTGTAAGACCATATCTGGGATATGG
1 GTAAGACCATAACTAGGCTATGGCATCAATACGAGATTATATGTAAGACCATATCTGGGATATGA
36831908 CATTGATATGAGACTTCGA
66 CATTGATATGAGACTTCGA
* * * *
36831927 GTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTATATGTAAGACGATATCTGGGATATG
1 GTAAGACCATAACTAGGCTA-TGGCATCAATACGAGATTATATGTAAGACCATATCTGGGATATG
36831992 ACATTG
65 ACATTG
36831998 GTACGGTACT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
84 17 0.27
85 45 0.73
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (84 bp):
GTAAGACCATAACTAGGCTATGGCATCAATACGAGATTATATGTAAGACCATATCTGGGATATGA
CATTGATATGAGACTTCGA
Found at i:36831974 original size:43 final size:42
Alignment explanation
Indices: 36831832--36831991 Score: 169
Period size: 42 Copynumber: 3.8 Consensus size: 42
36831822 TTAGGGTTAC
* * * * * *
36831832 TGAGACTATGTGTAAGACCATAACTAGGTTATGGCATCAATA
1 TGAGATTATATGTAAGACCATATCTGGGATATGGCATCGATA
* *
36831874 TGAGATTATGTGTAAGACCATATCTGGGATATGGCATTGATA
1 TGAGATTATATGTAAGACCATATCTGGGATATGGCATCGATA
** * *
36831916 TGAGACTTCGA-GTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTATATGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
36831959 CGAGATTATATGTAAGACGATATCTGGGATATG
1 TGAGATTATATGTAAGACCATATCTGGGATATG
36831992 ACATTGGTAC
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 64 0.66
43 33 0.34
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGATTATATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:36835918 original size:43 final size:43
Alignment explanation
Indices: 36835870--36835956 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
36835860 GATTAACGAG
*
36835870 ATGTGATTACGTGTAAAACCATGTCTAGGACATTGGCATCATT
1 ATGTGATTACGTGGAAAACCATGTCTAGGACATTGGCATCATT
* *
36835913 ATGTGATTACGTGGAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACGTGGAAAACCATGTCTAGGACATTGGCATCATT
36835956 A
1 A
36835957 ATTAATTTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
ATGTGATTACGTGGAAAACCATGTCTAGGACATTGGCATCATT
Found at i:36835974 original size:43 final size:43
Alignment explanation
Indices: 36835870--36836020 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
36835860 GATTAACGAG
* *
36835870 ATGTGATTACGTGTAAAACCATGTCTAGGACATTGGCATCATT
1 ATGTAATTACGTGTAAGACCATGTCTAGGACATTGGCATCATT
* * *
36835913 ATGTGATTACGTGGAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTAATTACGTGTAAGACCATGTCTAGGACATTGGCATCATT
* * * *
36835956 AAT-TAATTTCGTGTAAGACCATAGT-T-GGGCTATCGGCATCAAT
1 -ATGTAATTACGTGTAAGACCAT-GTCTAGGAC-ATTGGCATCATT
* * *
36835999 ATGTGATAACATGTAAGACCAT
1 ATGTAATTACGTGTAAGACCAT
36836021 ATCTGGGATA
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
42 5 0.05
43 82 0.90
44 4 0.04
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
ATGTAATTACGTGTAAGACCATGTCTAGGACATTGGCATCATT
Found at i:36847740 original size:48 final size:48
Alignment explanation
Indices: 36847568--36847852 Score: 256
Period size: 48 Copynumber: 5.9 Consensus size: 48
36847558 AAAGGGTAAG
** * *
36847568 ATGCTGATGCCATG-TCTCGGACATGGTCTTACACTGGTTCTCATATATCA
1 ATGCTGATGCCATGTTC-CAAACATGGTCTTACACTGG--CTCACATAACA
* * * * * * *
36847618 GTG-TCGATGCCATG-TCCTAGACATGGTCTCATATTGGCTCATACAACA
1 ATGCT-GATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATAACA
* * *
36847666 ATGCTGATGCTA-CTTCCAAACATGGTCTTACACTGGCTCACATATCA
1 ATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACA
* * * * * * *
36847713 AGGCCGATACCATGTCCCAAACATGGTCTTACACTAGCTCTCAAAACA
1 ATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACA
* * * * *
36847761 ATGTTGAGGCCATGTTCCAAACATGGTCTTACATTGGCTCATACAACA
1 ATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACA
36847809 ATGCTGATGCCATGTTCCAAACATGGTCTTACACT-GCTCACATA
1 ATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
36847853 TCGCCCTAGT
Statistics
Matches: 187, Mismatches: 43, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
47 38 0.20
48 118 0.63
49 3 0.02
50 28 0.15
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACA
Found at i:36847848 original size:143 final size:145
Alignment explanation
Indices: 36847588--36847854 Score: 389
Period size: 143 Copynumber: 1.9 Consensus size: 145
36847578 CATGTCTCGG
* * * * * * *
36847588 ACATGGTCTTACACTGGTTCTCATATATCAGTGTCGATGCCATGTCCTAGACATGGTCTCATATT
1 ACATGGTCTTACACTAGCTCTCATATAACAATGTCGAGGCCATGTCCTAAACATGGTCTCACATT
*
36847653 GGCTCATACAACAATGCTGATGCTACTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCC
66 GGCTCATACAACAATGCTGATGCCACTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCC
36847718 GATACCATGTCCCAA
131 GATACCATGTCCCAA
* *
36847733 ACATGGTCTTACACTAGCTCTCA-A-AACAATGTTGAGGCCATGTTCC-AAACATGGTCTTACAT
1 ACATGGTCTTACACTAGCTCTCATATAACAATGTCGAGGCCATG-TCCTAAACATGGTCTCACAT
*
36847795 TGGCTCATACAACAATGCTGATGCCATGTTCCAAACATGGTCTTACACT-GCTCACATATC
65 TGGCTCATACAACAATGCTGATGCCA-CTTCCAAACATGGTCTTACACTGGCTCACATATC
36847855 GCCCTAGTAT
Statistics
Matches: 109, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
143 63 0.58
144 25 0.23
145 21 0.19
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (145 bp):
ACATGGTCTTACACTAGCTCTCATATAACAATGTCGAGGCCATGTCCTAAACATGGTCTCACATT
GGCTCATACAACAATGCTGATGCCACTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCC
GATACCATGTCCCAA
Found at i:36855476 original size:48 final size:47
Alignment explanation
Indices: 36855392--36855618 Score: 204
Period size: 48 Copynumber: 4.7 Consensus size: 47
36855382 AAAGGGTAAG
* * * * * *
36855392 ATGCCAATGCCATATCCCAGACATGGTTTTATACTGGCTCATACAACA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC-TACAACA
* *
36855440 ATGCCGATGCCATGTTCCAAACACGGTCTTACACTGGCT-TACATATCG
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTACA-A-CA
* * * * * *
36855488 AGGACGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-ACAACA
* ** * * *
36855536 GTGATGAGGCCATGTTCCAAACATGGTCTTACATTGGATCATACAACA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC-TACAACA
* *
36855584 ATGCCAATGTCATGTTCCAAACATGGTCTTACACT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACT
36855619 AGTTCACATA
Statistics
Matches: 141, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
46 4 0.03
47 1 0.01
48 131 0.93
49 3 0.02
50 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (47 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTACAACA
Found at i:36855598 original size:96 final size:96
Alignment explanation
Indices: 36855392--36855620 Score: 239
Period size: 96 Copynumber: 2.4 Consensus size: 96
36855382 AAAGGGTAAG
* * * * * *
36855392 ATGCCAATGCCATATCCCAGACATGGTTTTATACTGGCTCATACAACAATGCCGATGCCATGTTC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCATACAACAATGACGAGGCCATGTTC
* *
36855457 CAAACACGGTCTTACACTGGCTTACATATCG
66 CAAACACGGTCTTACACTGGCATACATATCA
* * * * * *
36855488 AGGACGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATAACAGTGATGAGGCCATGTT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ACAACAATGACGAGGCCATGTT
* *
36855552 CCAAACATGGTCTTACATTGGATCATACA-A-CA
65 CCAAACACGGTCTTACACTGG--CATACATATCA
* * *
36855584 ATGCCAATGTCATGTTCCAAACATGGTCTTACACTAG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAG
36855621 TTCACATATC
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
95 1 0.01
96 101 0.94
97 1 0.01
98 5 0.05
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCATACAACAATGACGAGGCCATGTTC
CAAACACGGTCTTACACTGGCATACATATCA
Found at i:36859335 original size:42 final size:42
Alignment explanation
Indices: 36859276--36859439 Score: 206
Period size: 42 Copynumber: 3.9 Consensus size: 42
36859266 TTAGGGTTAC
* *
36859276 TGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGAGTAAGACCATATCTGGGATATGGCATCGATA
* *
36859318 TGAGATTATGCGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGAGTAAGACCATATCTGGGATATGGCATCGATA
* * *
36859360 TGAGACTT-CGAGTAAGACCATAGCTGGGCTATTGGCATCAATA
1 TGAGA-TTACGAGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
36859403 CGAGATTAC-ATGTAAGACCATATCTAGGATATGGCAT
1 TGAGATTACGA-GTAAGACCATATCTGGGATATGGCAT
36859440 TTGTACGGTA
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
42 72 0.68
43 34 0.32
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
TGAGATTACGAGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:36859422 original size:85 final size:84
Alignment explanation
Indices: 36859276--36859439 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 84
36859266 TTAGGGTTAC
* * * * **
36859276 TGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTATGCGTAAGACCATAT
1 TGAGACTACGAGTAAGACCATAGCTGGGATATGGCATCAATACGAGATTACACGTAAGACCATAT
*
36859341 CTGGGATATGGCATCGATA
66 CTAGGATATGGCATCGATA
* * *
36859360 TGAGACTTCGAGTAAGACCATAGCTGGGCTATTGGCATCAATACGAGATTACATGTAAGACCATA
1 TGAGACTACGAGTAAGACCATAGCTGGGATA-TGGCATCAATACGAGATTACACGTAAGACCATA
36859425 TCTAGGATATGGCAT
65 TCTAGGATATGGCAT
36859440 TTGTACGGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 27 0.39
85 42 0.61
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (84 bp):
TGAGACTACGAGTAAGACCATAGCTGGGATATGGCATCAATACGAGATTACACGTAAGACCATAT
CTAGGATATGGCATCGATA
Found at i:36871932 original size:26 final size:27
Alignment explanation
Indices: 36871902--36871961 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
36871892 TAATATCGTA
*
36871902 ACAAAGCTGCTAGTAACAGTA-AT-GC
1 ACAAAGCTGCCAGTAACAGTATATGGC
*
36871927 AGCAAAGCTGCCAGTATCAGTATATGGC
1 A-CAAAGCTGCCAGTAACAGTATATGGC
36871955 ACAAAGC
1 ACAAAGC
36871962 CATGAGTAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.03
26 18 0.60
27 8 0.27
28 3 0.10
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
ACAAAGCTGCCAGTAACAGTATATGGC
Found at i:36871996 original size:40 final size:40
Alignment explanation
Indices: 36871951--36872146 Score: 266
Period size: 40 Copynumber: 4.9 Consensus size: 40
36871941 TATCAGTATA
* * ** *
36871951 TGGCACAAAGCCATGAGTAGCAACACGAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAGCGGCACAAAGCCATCAATAG
* *
36871991 CGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAGCGGCACAAAGCCATCAATAG
* *
36872031 TGGCACAAAGCCATCAATAGCGGTACAAAGCCATCAGTAG
1 TGGCACAAAGCCATCAATAGCGGCACAAAGCCATCAATAG
* * **
36872071 TAGCACAAAGCCATCAATAGTGGCACAAAGCTGTCAATAG
1 TGGCACAAAGCCATCAATAGCGGCACAAAGCCATCAATAG
*
36872111 TGGCACAAAGCCATCAATAGCAGCACAAAGCCATCA
1 TGGCACAAAGCCATCAATAGCGGCACAAAGCCATCA
36872147 GTAGGTCCAC
Statistics
Matches: 134, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.40, C:0.26, G:0.20, T:0.14
Consensus pattern (40 bp):
TGGCACAAAGCCATCAATAGCGGCACAAAGCCATCAATAG
Found at i:36872157 original size:20 final size:20
Alignment explanation
Indices: 36871978--36872146 Score: 257
Period size: 20 Copynumber: 8.4 Consensus size: 20
36871968 TAGCAACACG
*
36871978 AAGCCATCAATAGCGGCACA
1 AAGCCATCAATAGTGGCACA
36871998 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGTGGCACA
36872018 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGTGGCACA
* *
36872038 AAGCCATCAATAGCGGTACA
1 AAGCCATCAATAGTGGCACA
* *
36872058 AAGCCATCAGTAGTAGCACA
1 AAGCCATCAATAGTGGCACA
36872078 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGTGGCACA
**
36872098 AAGCTGTCAATAGTGGCACA
1 AAGCCATCAATAGTGGCACA
**
36872118 AAGCCATCAATAGCAGCACA
1 AAGCCATCAATAGTGGCACA
36872138 AAGCCATCA
1 AAGCCATCA
36872147 GTAGGTCCAC
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 134 1.00
ACGTcount: A:0.40, C:0.26, G:0.20, T:0.14
Consensus pattern (20 bp):
AAGCCATCAATAGTGGCACA
Found at i:36872202 original size:36 final size:36
Alignment explanation
Indices: 36872148--36872218 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
36872138 AAGCCATCAG
*
36872148 TAGGTCCACAGTCGTCTTGTGCGACCCGTGCAACCT
1 TAGGTCCACAATCGTCTTGTGCGACCCGTGCAACCT
* *
36872184 TAGGTCCACAATCTTCTTGTGCGACCTGTGCAACC
1 TAGGTCCACAATCGTCTTGTGCGACCCGTGCAACC
36872219 ATATCAGTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.18, C:0.32, G:0.23, T:0.27
Consensus pattern (36 bp):
TAGGTCCACAATCGTCTTGTGCGACCCGTGCAACCT
Found at i:36880211 original size:53 final size:53
Alignment explanation
Indices: 36880148--36880250 Score: 179
Period size: 53 Copynumber: 1.9 Consensus size: 53
36880138 AAAAGAGTTG
36880148 ATACTTCGCAAAGCTCACGATAGTTCGTTTGCTTTGCATTCTGGAGAAACGAA
1 ATACTTCGCAAAGCTCACGATAGTTCGTTTGCTTTGCATTCTGGAGAAACGAA
* * *
36880201 ATACTTCGCAAAGCTCATGATAGTTCTTTTGCTTTTCATTCTGGAGAAAC
1 ATACTTCGCAAAGCTCACGATAGTTCGTTTGCTTTGCATTCTGGAGAAAC
36880251 AAAAATGTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (53 bp):
ATACTTCGCAAAGCTCACGATAGTTCGTTTGCTTTGCATTCTGGAGAAACGAA
Found at i:36891489 original size:27 final size:27
Alignment explanation
Indices: 36891458--36891635 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36891448 TAAATTGTAC
36891458 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36891485 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36891511 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36891539 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36891567 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36891594 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36891621 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36891636 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36891572 original size:82 final size:81
Alignment explanation
Indices: 36891459--36891614 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36891449 AAATTGTACA
* *
36891459 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36891523 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36891540 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36891605 TGCGAGTTGA
65 TGCGAATTGA
36891615 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36891626 original size:82 final size:81
Alignment explanation
Indices: 36891455--36891635 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36891445 GATTAAATTG
* *
36891455 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36891520 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36891536 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36891600 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36891618 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36891636 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36894335 original size:9 final size:9
Alignment explanation
Indices: 36894321--36894356 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
36894311 CATGCAAATT
36894321 AGAAAAGAA
1 AGAAAAGAA
36894330 AGAAAAGAA
1 AGAAAAGAA
36894339 A-AGAAAGAA
1 AGA-AAAGAA
36894348 AGAAAAGAA
1 AGAAAAGAA
36894357 GAAGAGAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 1 0.04
9 23 0.92
10 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (9 bp):
AGAAAAGAA
Found at i:36894336 original size:5 final size:5
Alignment explanation
Indices: 36894321--36894361 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
36894311 CATGCAAATT
36894321 AGAAA AG-AA AGAAA AGAAA AG-AA AG-AA AGAAA AGAAGA AGA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAA-A AGA
36894362 GAAGGCACGG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 12 0.36
5 17 0.52
6 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:36894347 original size:18 final size:19
Alignment explanation
Indices: 36894324--36894361 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
36894314 GCAAATTAGA
36894324 AAAGAAAGAAAAGAA-AAG
1 AAAGAAAGAAAAGAAGAAG
36894342 AAAGAAAGAAAAGAAGAAG
1 AAAGAAAGAAAAGAAGAAG
36894361 A
1 A
36894362 GAAGGCACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAAGAAAGAAAAGAAGAAG
Found at i:36894364 original size:13 final size:13
Alignment explanation
Indices: 36894321--36894356 Score: 63
Period size: 13 Copynumber: 2.7 Consensus size: 13
36894311 CATGCAAATT
36894321 AGAAAAGAAAGAAA
1 AGAAAAGAAAG-AA
36894335 AGAAAAGAAAGAA
1 AGAAAAGAAAGAA
36894348 AGAAAAGAA
1 AGAAAAGAA
36894357 GAAGAGAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AGAAAAGAAAGAA
Found at i:36896067 original size:25 final size:22
Alignment explanation
Indices: 36896035--36896079 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 22
36896025 TAGTTGAGGC
36896035 AATGTTGGTATGGTAGCTTAGCCT
1 AATGTTGGTAT-GT-GCTTAGCCT
36896059 AATGCTTGGTATGTGCTTAGC
1 AATG-TTGGTATGTGCTTAGC
36896080 TTCAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 7 0.35
24 6 0.30
25 7 0.35
ACGTcount: A:0.20, C:0.13, G:0.29, T:0.38
Consensus pattern (22 bp):
AATGTTGGTATGTGCTTAGCCT
Found at i:36902329 original size:20 final size:20
Alignment explanation
Indices: 36902306--36902344 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36902296 AAAGTGATGA
* *
36902306 ACCATTTCATTTATTTACTT
1 ACCATTCCATTTACTTACTT
36902326 ACCATTCCATTTACTTACT
1 ACCATTCCATTTACTTACT
36902345 GTAAGCTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:36906105 original size:27 final size:27
Alignment explanation
Indices: 36906068--36906432 Score: 422
Period size: 27 Copynumber: 13.6 Consensus size: 27
36906058 GTGACAACCG
36906068 TCGA-TTGTAAAATTACTGAAATACCC
1 TCGATTTGTAAAATTACTGAAATACCC
36906094 TCGATTTGTAAAATTACTGAAATACCC
1 TCGATTTGTAAAATTACTGAAATACCC
*
36906121 TC-AGTTTGCAAAATTACTGAAATACCC
1 TCGA-TTTGTAAAATTACTGAAATACCC
36906148 TCGATTTGTAAAATTACTGAAATACCC
1 TCGATTTGTAAAATTACTGAAATACCC
* * *
36906175 TCAACTTGTAAAATTAC-CAAAGTACCC
1 TCGATTTGTAAAATTACTGAAA-TACCC
* * * ** *
36906202 CCGGTTTATAAAATTACCCAAATATCC
1 TCGATTTGTAAAATTACTGAAATACCC
* *
36906229 TTGATTTGTAAAATTA-TCGAAATACCG
1 TCGATTTGTAAAATTACT-GAAATACCC
36906256 TCGA-TTGTAAAATTACTGAAATACCC
1 TCGATTTGTAAAATTACTGAAATACCC
* * *
36906282 TCAATTTGTAAAATTACCGAAATACCA
1 TCGATTTGTAAAATTACTGAAATACCC
36906309 TCGA-TTGTAAAATTACTGAAATACCC
1 TCGATTTGTAAAATTACTGAAATACCC
* *
36906335 TTGATTTGTAAAATTA-TCAAAATACCC
1 TCGATTTGTAAAATTACT-GAAATACCC
** *
36906362 TC-AGTTTACAAAATTACTAAAATACCC
1 TCGA-TTTGTAAAATTACTGAAATACCC
* *
36906389 TCAATTTGTAAAATTACTAAAATACCC
1 TCGATTTGTAAAATTACTGAAATACCC
*
36906416 TCGACTTGTAAAATTAC
1 TCGATTTGTAAAATTAC
36906433 CACAGTACCC
Statistics
Matches: 290, Mismatches: 36, Indels: 25
0.83 0.10 0.07
Matches are distributed among these distances:
26 55 0.19
27 228 0.79
28 7 0.02
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TCGATTTGTAAAATTACTGAAATACCC
Found at i:36906215 original size:81 final size:80
Alignment explanation
Indices: 36906068--36906496 Score: 470
Period size: 81 Copynumber: 5.3 Consensus size: 80
36906058 GTGACAACCG
* * *
36906068 TCGA-TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCAGTTTGCAA
1 TCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAATACCCTCAGTTTACAA
*
36906132 AATTACTGAAATACCC
65 AATTACCGAAATACCC
* * * *
36906148 TCGATTTGTAAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGGTTTATAA
1 TCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAA-TACCCTCAGTTTACAA
* *
36906213 AATTACCCAAATATCC
65 AATTACCGAAATACCC
* * * * **
36906229 TTGATTTGTAAAATTA-TCGAAATACCGTCGA-TTGTAAAATTACTGAAATACCCTCAATTTGTA
1 TCGATTTGTAAAATTACT-GAAATACCCTCGACTTGTAAAATTAC-CAAATACCCTCAGTTTACA
*
36906292 AAATTACCGAAATACCA
64 AAATTACCGAAATACCC
* * *
36906309 TCGA-TTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTATCAAAATACCCTCAGTTTACAA
1 TCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTA-CCAAATACCCTCAGTTTACAA
**
36906373 AATTACTAAAATACCC
65 AATTACCGAAATACCC
* * * * * *
36906389 TCAATTTGTAAAATTACTAAAATACCCTCGACTTGTAAAATTACCACAGTACCCCCAATTTACAT
1 TCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCA-AATACCCTCAGTTTACAA
***
36906454 AATTACCGTTTTACCC
65 AATTACCGAAATACCC
** *
36906470 TCGATTTACAAAATTATTGAAATACCC
1 TCGATTTGTAAAATTACTGAAATACCC
36906497 CTGTAGGGTA
Statistics
Matches: 290, Mismatches: 50, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
79 22 0.08
80 94 0.32
81 174 0.60
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (80 bp):
TCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAATACCCTCAGTTTACAAA
ATTACCGAAATACCC
Found at i:36906511 original size:27 final size:27
Alignment explanation
Indices: 36906481--36906820 Score: 191
Period size: 27 Copynumber: 12.2 Consensus size: 27
36906471 CGATTTACAA
*
36906481 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
36906508 AATTACCT-AAATAACCTTGTAGGGTAG
1 AATTA-CTGAAATACCCCTGTAGGGTAG
* * * * *
36906535 AAATACCGAAATACCCTTCTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * **
36906562 AAATACCGAAATACCTTTGTAGGGTAGG
1 AATTACTGAAATACCCCTGTAGGGTA-G
* *
36906590 AA-TACCGACATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
36906616 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **** *** *
36906643 AATTACTGAATTCTACCGAAATACCCCTAT
1 AATTACTGAA--ATACCCCTGTA-GGGTAG
* * * * *
36906673 AAGGTAGAATTACCGAAATACCCCTATAAGGTAG
1 AA--T--TACT--G-AAATACCCCTGTAGGGTAG
* *
36906707 AATTACTAAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
36906734 AATTACCGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
36906761 AATTACTAAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
36906788 AATTACCGAAATACCCTTGT-GAGGTAA
1 AATTACTGAAATACCCCTGTAG-GGTAG
36906815 AATTAC
1 AATTAC
36906821 CATTTTACCC
Statistics
Matches: 240, Mismatches: 58, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
26 5 0.02
27 202 0.84
28 4 0.02
29 6 0.03
30 6 0.03
32 2 0.01
34 6 0.03
35 7 0.03
37 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:36906546 original size:54 final size:54
Alignment explanation
Indices: 36906488--36906803 Score: 299
Period size: 54 Copynumber: 5.7 Consensus size: 54
36906478 CAAAATTATT
* * *
36906488 GAAATACCCCTGTAGGGTAGAATTACCTAAATAACCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACC
* * * * ** *
36906542 GAAATACCCTTCTAAGGTAGAAATACCGAAATACCTTTGTAGGGTAGGAATACC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACC
* * *
36906596 GACATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACTGAATTCTACC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT-AGG--G---TA--GAA--ATACC
* * * * * *
36906660 GAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACC
* * * * * *
36906714 AAAATACCCCTGTAGGATAGAATTACCGAAATACCCCTATAAGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACC
* *
36906768 AAAATACCCCTGTAGGATAGAATTACCGAAATACCC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCC
36906804 TTGTGAGGTA
Statistics
Matches: 222, Mismatches: 30, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
54 167 0.75
55 3 0.01
56 3 0.01
57 1 0.00
58 2 0.01
60 2 0.01
61 1 0.00
62 2 0.01
63 2 0.01
64 39 0.18
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACC
Done.