Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 116 of 276
Found at i:36906573 original size:81 final size:81
Alignment explanation
Indices: 36906488--36906817 Score: 315
Period size: 81 Copynumber: 4.0 Consensus size: 81
36906478 CAAAATTATT
* * * * * * *
36906488 GAAATACCCCTGTAGGGTAGAATTACCTAAATAACCTTGTAGGGTAGAAATACCGAAATACCCTT
1 GAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
*
36906553 CTAAGGTAGAAATACC
66 GTAAGGTAGAAATACC
** * * * *
36906569 GAAATACCTTTGTAGGGTAGGAA-TACCGACATACCCCTGTAGGGTAGAATTACTGAAATACCCC
1 GAAATACCCCTATAAGGTA-GAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCC
36906633 TGTAAGGTAGAATTACTGAATTCTACC
65 TGTAAGGTAG----A---AA---TACC
* * **
36906660 GAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACTAAAATACCCCT
1 GAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
*
36906725 GT-AGGATAGAATTACC
66 GTAAGG-TAGAAATACC
** * *
36906741 GAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCTT
1 GAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
*
36906806 GTGAGGTA-AAAT
66 GTAAGGTAGAAAT
36906818 TACCATTTTA
Statistics
Matches: 207, Mismatches: 28, Indels: 29
0.78 0.11 0.11
Matches are distributed among these distances:
80 3 0.01
81 125 0.60
82 6 0.03
84 1 0.00
85 1 0.00
87 1 0.00
88 2 0.01
90 6 0.03
91 62 0.30
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.25
Consensus pattern (81 bp):
GAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
GTAAGGTAGAAATACC
Found at i:36906746 original size:118 final size:118
Alignment explanation
Indices: 36906538--36906767 Score: 327
Period size: 118 Copynumber: 1.9 Consensus size: 118
36906528 AGGGTAGAAA
* * ** * * * *
36906538 TACCGAAATACCCTTCTAAGGTAGAAATACCGAAATACCTTTGTAGGGTAGGAATACCGACATAC
1 TACCGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTATAAGGTAGGAATACCAAAATAC
* * *
36906603 CCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACTGAATTC
66 CCCTGTAGGATAGAATTACCGAAATACCCCTATAAGGTAGAATTACTGAATTC
* *
36906656 TACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAAGGTA-GAATTACTAAAATA
1 TACCGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTATAAGGTAGGAA-TACCAAAATA
36906720 CCCCTGTAGGATAGAATTACCGAAATACCCCTATAAGGTAGAATTACT
65 CCCCTGTAGGATAGAATTACCGAAATACCCCTATAAGGTAGAATTACT
36906768 AAAATACCCC
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
117 3 0.03
118 95 0.97
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (118 bp):
TACCGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTATAAGGTAGGAATACCAAAATAC
CCCTGTAGGATAGAATTACCGAAATACCCCTATAAGGTAGAATTACTGAATTC
Found at i:36906779 original size:145 final size:145
Alignment explanation
Indices: 36906530--36906793 Score: 379
Period size: 145 Copynumber: 1.8 Consensus size: 145
36906520 AACCTTGTAG
* * * ** *
36906530 GGTAGAAATACCGAAATACCCTTCTAAGGTAGAAATACCGAAATACCTTTGTAGGGTAGGAATAC
1 GGTAGAAATACCGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTGTAGGATAGGAATAC
* * * *
36906595 CGACATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGG-TAGAATTACTGAATTCTAC
66 CGAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGT-AGGATAGAATTACTGAATTCTAC
36906659 CGAAATACCCCTATAA
130 CGAAATACCCCTATAA
* * *
36906675 GGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGATA-GAATTA
1 GGTAGAAATACCGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTGTAGGATAGGAA-TA
36906739 CCGAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTAC
65 CCGAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTAC
36906794 CGAAATACCC
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
144 6 0.06
145 98 0.94
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.24
Consensus pattern (145 bp):
GGTAGAAATACCGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTGTAGGATAGGAATAC
CGAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGATAGAATTACTGAATTCTACC
GAAATACCCCTATAA
Found at i:36906821 original size:27 final size:27
Alignment explanation
Indices: 36906656--36906821 Score: 210
Period size: 27 Copynumber: 6.1 Consensus size: 27
36906646 TACTGAATTC
36906656 TACCGAAATACCCCTATAAGGTAGAAT
1 TACCGAAATACCCCTATAAGGTAGAAT
36906683 TACCGAAATACCCCTATAAGGTAGAAT
1 TACCGAAATACCCCTATAAGGTAGAAT
** *
36906710 TACTAAAATACCCCTGT-AGGATAGAAT
1 TACCGAAATACCCCTATAAGG-TAGAAT
36906737 TACCGAAATACCCCTATAAGGTAGAAT
1 TACCGAAATACCCCTATAAGGTAGAAT
** *
36906764 TACTAAAATACCCCTGT-AGGATAGAAT
1 TACCGAAATACCCCTATAAGG-TAGAAT
* * * *
36906791 TACCGAAATACCCTTGTGAGGTAAAAT
1 TACCGAAATACCCCTATAAGGTAGAAT
36906818 TACC
1 TACC
36906822 ATTTTACCCC
Statistics
Matches: 122, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.05
27 110 0.90
28 6 0.05
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCCTATAAGGTAGAAT
Found at i:36907134 original size:27 final size:27
Alignment explanation
Indices: 36907045--36907127 Score: 141
Period size: 27 Copynumber: 3.1 Consensus size: 27
36907035 TGGAGGAAGC
*
36907045 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
*
36907072 GTTCTGGTGGCTCTGCCACAAATATTT
1 GTTCTGGTGGCTCTGCCACAAATATCT
36907099 GTTCTGGTGGCTCTGCCAC-AATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
36907125 GTT
1 GTT
36907128 TTTGGTGACT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 9 0.17
27 44 0.83
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:36907303 original size:58 final size:58
Alignment explanation
Indices: 36907218--36907336 Score: 175
Period size: 58 Copynumber: 2.1 Consensus size: 58
36907208 TGTAGGCTTC
* *
36907218 GTGCCAATTATAGACCTGTTATCAATGGCTGAGTGCCGATCATGTTACTGAAGGCTGT
1 GTGCCAATTATAGACCCGTTATCAATGGCTGAGTGCCGATCATGTTACCGAAGGCTGT
* * * * *
36907276 GTGCCGATTATAGACCCGTTATTAATGGCTGGGTGTCGATCATGTTACCGAAGGTTGT
1 GTGCCAATTATAGACCCGTTATCAATGGCTGAGTGCCGATCATGTTACCGAAGGCTGT
36907334 GTG
1 GTG
36907337 TAGTTATTGT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (58 bp):
GTGCCAATTATAGACCCGTTATCAATGGCTGAGTGCCGATCATGTTACCGAAGGCTGT
Found at i:36907478 original size:27 final size:27
Alignment explanation
Indices: 36907425--36907505 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
36907415 ATTCTGTTAA
* *
36907425 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
*
36907452 GTGGCTCTGCCACAATATTTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* * *
36907479 GTGACTCTGTCATAATATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
36907505 G
1 G
36907506 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 5 0.11
27 40 0.87
28 1 0.02
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:36908799 original size:20 final size:20
Alignment explanation
Indices: 36908774--36908893 Score: 91
Period size: 20 Copynumber: 6.0 Consensus size: 20
36908764 GATGCATAAC
*
36908774 AGGGGCACTGAAGTGCAAAT
1 AGGGGCACCGAAGTGCAAAT
* *
36908794 AGGGGCA-CAAACGTGCAAAC
1 AGGGGCACCGAA-GTGCAAAT
* *
36908814 AGGGGCACCGTAGCGCAAAT
1 AGGGGCACCGAAGTGCAAAT
** * * *
36908834 AAAGACACTGAAGTGTATAA-
1 AGGGGCACCGAAGTGCA-AAT
* *
36908854 AGGGGCACCAAAGTGCAAAC
1 AGGGGCACCGAAGTGCAAAT
*
36908874 AGGGGCACCGAAGTGGAAAT
1 AGGGGCACCGAAGTGCAAAT
36908894 CTGTACATGT
Statistics
Matches: 73, Mismatches: 23, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
19 4 0.05
20 65 0.89
21 4 0.05
ACGTcount: A:0.38, C:0.19, G:0.32, T:0.11
Consensus pattern (20 bp):
AGGGGCACCGAAGTGCAAAT
Found at i:36909994 original size:19 final size:20
Alignment explanation
Indices: 36909970--36910008 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
36909960 TTTTGTTTTC
36909970 TTCTTT-TATTAACTTTTAT
1 TTCTTTATATTAACTTTTAT
* *
36909989 TTCTTTATTTTATCTTTTAT
1 TTCTTTATATTAACTTTTAT
36910009 CTTTTAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (20 bp):
TTCTTTATATTAACTTTTAT
Found at i:36911845 original size:36 final size:35
Alignment explanation
Indices: 36911766--36911835 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
36911756 CATTATAATC
* **
36911766 ACTGTCACATGGTATGAAAACATACTGACATATTT
1 ACTGTCACATGGCATGAAAACATACCCACATATTT
*
36911801 ACTGTCACATGGCATGAATAACATACCCATATATT
1 ACTGTCACATGGCATGAA-AACATACCCACATATT
36911836 CTCTTTCACA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 17 0.57
36 13 0.43
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (35 bp):
ACTGTCACATGGCATGAAAACATACCCACATATTT
Found at i:36912565 original size:125 final size:125
Alignment explanation
Indices: 36912434--36912677 Score: 409
Period size: 125 Copynumber: 2.0 Consensus size: 125
36912424 ATGTTTCTAT
*
36912434 CCGTGTGCTCAATTCTTTGCATTCTATTTCTCAAATTTAAGGTGTAGGGGACACACGGCCTAACC
1 CCGTGTGCTCAATTCTTAGCATTCTATTTCTCAAATTTAAGGTGTAGGGGACACACGGCCTAACC
* *
36912499 ACATGCCCACGTACCATACTGTGTGTCACACAC-AGTCTAAACACATGCCCGTGTCTTTGC
66 ACATGCCCACGTACCAGACTGTGTGTCACACACGA-TCTAAACACACGCCCGTGTCTTTGC
*
36912559 CCGTGTGCTCAATTCTTAGCATTCTGTTTCTCAAATTTAAGGTGTAGGGGACACACGGCCTAACC
1 CCGTGTGCTCAATTCTTAGCATTCTATTTCTCAAATTTAAGGTGTAGGGGACACACGGCCTAACC
* * *
36912624 ACATGCCCATGTACTAGACTGTGTGTCACACACGATCTAGACACACGCCCGTGT
66 ACATGCCCACGTACCAGACTGTGTGTCACACACGATCTAAACACACGCCCGTGT
36912678 GTCTACCCAT
Statistics
Matches: 111, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
125 110 0.99
126 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (125 bp):
CCGTGTGCTCAATTCTTAGCATTCTATTTCTCAAATTTAAGGTGTAGGGGACACACGGCCTAACC
ACATGCCCACGTACCAGACTGTGTGTCACACACGATCTAAACACACGCCCGTGTCTTTGC
Found at i:36913697 original size:57 final size:57
Alignment explanation
Indices: 36913543--36913742 Score: 244
Period size: 57 Copynumber: 3.5 Consensus size: 57
36913533 ATGAAATTTC
* * *
36913543 AGGATTACCAGTCTAGGCTAAATCCTTTATGTAACGTATGCTTAAAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAGCTTAATT
* *
36913600 AGGATTACTAGTCTAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAGCTTAATT
* * * * *
36913657 AGGATTACCAGTCCAGGCTAAATCC-TAATTGTATCATATGCTCGAGAAGA-ATTATATC
1 AGGATTACCAGTCCAGGCTAAATCCTTTA-TGTAACGTATGCTC-AGAAGAGCTTA-ATT
*
36913715 AGGATTACCCGTCC-GAGCTAAATCCTTT
1 AGGATTACCAGTCCAG-GCTAAATCCTTT
36913743 CTATAACGAG
Statistics
Matches: 126, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
56 2 0.02
57 93 0.74
58 30 0.24
59 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAGCTTAATT
Found at i:36914307 original size:19 final size:20
Alignment explanation
Indices: 36914283--36914326 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
36914273 TACAACACAT
*
36914283 ATTTTTTAT-AAATTTCAAA
1 ATTTTTCATCAAATTTCAAA
* *
36914302 ATTTTTCATCAATTTTCACA
1 ATTTTTCATCAAATTTCAAA
36914322 ATTTT
1 ATTTT
36914327 ACATTTTAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTTTCATCAAATTTCAAA
Found at i:36923757 original size:57 final size:57
Alignment explanation
Indices: 36923667--36923804 Score: 222
Period size: 57 Copynumber: 2.4 Consensus size: 57
36923657 ATCGAATTTC
* * *
36923667 AGGATTACCAGTCTAGGCTAAATCCTTTGTGTAATGTATGCTCAGAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAGCTTAATT
*
36923724 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGGTCAGAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAGCTTAATT
* *
36923781 AAGATTACTAGTCCAGGCTAAATC
1 AGGATTACCAGTCCAGGCTAAATC
36923805 TTAATTGTAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 75 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAGCTTAATT
Found at i:36924945 original size:159 final size:159
Alignment explanation
Indices: 36924656--36924955 Score: 582
Period size: 159 Copynumber: 1.9 Consensus size: 159
36924646 GTTGCCGGAG
36924656 TCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGCAGTCCATTTTAAAATTTTCCAGG
1 TCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGCAGTCCATTTTAAAATTTTCCAGG
*
36924721 CAGTTGGCTAACTGCGACACTGTCACCTTAAAAATCATACCTTGAGTTTCACAACTCGAAAATCA
66 CAATTGGCTAACTGCGACACTGTCACCTTAAAAATCATACCTTGAGTTTCACAACTCGAAAATCA
36924786 GTTTCGTAATTGTTCCCTGCAACTAGACT
131 GTTTCGTAATTGTTCCCTGCAACTAGACT
36924815 TCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGCAGTCCATTTTAAAATTTTCCAGG
1 TCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGCAGTCCATTTTAAAATTTTCCAGG
*
36924880 CAATTGGCTAACTGCGACACTGTCACCTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCA
66 CAATTGGCTAACTGCGACACTGTCACCTTAAAAATCATACCTTGAGTTTCACAACTCGAAAATCA
36924945 GTTTCGTAATT
131 GTTTCGTAATT
36924956 TTTCTATGAA
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
159 139 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (159 bp):
TCGGACACGAGGGGTTCACAGACTAAATTCGCTTACTATCGCAGTCCATTTTAAAATTTTCCAGG
CAATTGGCTAACTGCGACACTGTCACCTTAAAAATCATACCTTGAGTTTCACAACTCGAAAATCA
GTTTCGTAATTGTTCCCTGCAACTAGACT
Found at i:36929360 original size:40 final size:40
Alignment explanation
Indices: 36929330--36929486 Score: 203
Period size: 40 Copynumber: 3.9 Consensus size: 40
36929320 CAGATTTAGT
36929330 AACTCGCACCAATGCCTTCGGGTCTTAGCCCGGATATATC
1 AACTCGCACCAATGCCTTCGGGTCTTAGCCCGGATATATC
*
36929370 AACTTGCA-CAATTGCCTTCGGGTCTTAGCCCGGATATATC
1 AACTCGCACCAA-TGCCTTCGGGTCTTAGCCCGGATATATC
* * *
36929410 AATTCGCACAAATGCCTTCGGGTCTTAGCTCGGATATAATC
1 AACTCGCACCAATGCCTTCGGGTCTTAGCCCGGATAT-ATC
* * *
36929451 -ACTAGC-TCAATTGCCTTCGGGACTTAGCCCGGATAT
1 AACTCGCACCAA-TGCCTTCGGGTCTTAGCCCGGATAT
36929487 CATTCAAATG
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 5 0.05
40 92 0.90
41 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
AACTCGCACCAATGCCTTCGGGTCTTAGCCCGGATATATC
Found at i:36929438 original size:80 final size:80
Alignment explanation
Indices: 36929299--36929486 Score: 254
Period size: 80 Copynumber: 2.3 Consensus size: 80
36929289 CACCAGCATG
* * * * *
36929299 ATTGCTCTTCGGGACCTAGCCCAGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGG
1 ATTGC-CTTCGGGACTTAGCCCGGATATA-TCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGG
*
36929363 ATAT-ATCAACTTGCACA
64 ATATAATC-ACTAGCACA
* *
36929380 ATTGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCTCGGAT
1 ATTGCCTTCGGGACTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGAT
*
36929445 ATAATCACTAGCTCA
66 ATAATCACTAGCACA
36929460 ATTGCCTTCGGGACTTAGCCCGGATAT
1 ATTGCCTTCGGGACTTAGCCCGGATAT
36929487 CATTCAAATG
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
79 1 0.01
80 86 0.91
81 8 0.08
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (80 bp):
ATTGCCTTCGGGACTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGAT
ATAATCACTAGCACA
Found at i:36929816 original size:29 final size:29
Alignment explanation
Indices: 36929782--36929853 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
36929772 ATCAACCACG
* *
36929782 CACACTTAGTGCCATGTACTTT-AAACTCA
1 CACACTTAGTGCCATGCA-TTTCAAACCCA
* *
36929811 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCA
36929840 CACACTTAGTGCCA
1 CACACTTAGTGCCA
36929854 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCA
Found at i:36929896 original size:43 final size:43
Alignment explanation
Indices: 36929835--36930711 Score: 1709
Period size: 43 Copynumber: 20.4 Consensus size: 43
36929825 TGCATTTCAA
*
36929835 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
36929878 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
36929921 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36929964 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930007 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930050 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930093 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930136 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930179 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930222 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930265 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930308 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930351 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930394 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930437 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930480 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930523 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930566 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
36930609 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTGATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930652 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36930695 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
36930712 TGAAAACCAA
Statistics
Matches: 827, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 827 1.00
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:36930983 original size:50 final size:50
Alignment explanation
Indices: 36930903--36931003 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
36930893 TAGTCATAAC
*
36930903 ACTCCTTCAAAATTGCATCACTTATACCCTTATAATTCAATCCAAATCGA
1 ACTCCTTCAAAACTGCATCACTTATACCCTTATAATTCAATCCAAATCGA
*
36930953 ACTCTTTCAAAACTGCATCACTTATACCCTTATAATTCAATCCAAATCGA
1 ACTCCTTCAAAACTGCATCACTTATACCCTTATAATTCAATCCAAATCGA
36931003 A
1 A
36931004 ATTCAAATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.32
Consensus pattern (50 bp):
ACTCCTTCAAAACTGCATCACTTATACCCTTATAATTCAATCCAAATCGA
Found at i:36931838 original size:100 final size:100
Alignment explanation
Indices: 36931665--36931865 Score: 393
Period size: 100 Copynumber: 2.0 Consensus size: 100
36931655 ATATATGGCA
36931665 TAACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAGGGAATCCAGAAA
1 TAACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAGGGAATCCAGAAA
36931730 CCGTTCTGGCCCTGTCTCACGAGAACCTGAATATC
66 CCGTTCTGGCCCTGTCTCACGAGAACCTGAATATC
*
36931765 TAACTCTTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAGGGAATCCAGAAA
1 TAACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAGGGAATCCAGAAA
36931830 CCGTTCTGGCCCTGTCTCACGAGAACCTGAATATC
66 CCGTTCTGGCCCTGTCTCACGAGAACCTGAATATC
36931865 T
1 T
36931866 CTTAACATAC
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (100 bp):
TAACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAGGGAATCCAGAAA
CCGTTCTGGCCCTGTCTCACGAGAACCTGAATATC
Found at i:36932754 original size:40 final size:40
Alignment explanation
Indices: 36932710--36932973 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
36932700 GCACCTCGTT
* *
36932710 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36932750 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
36932790 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
36932830 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
36932870 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
36932909 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
36932950 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36932974 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36945185 original size:15 final size:16
Alignment explanation
Indices: 36945167--36945196 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36945157 TATTAAGATA
36945167 AATGC-AATTATCCTT
1 AATGCAAATTATCCTT
36945182 AATGCAAATTATCCT
1 AATGCAAATTATCCT
36945197 AAGTATGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.37
Consensus pattern (16 bp):
AATGCAAATTATCCTT
Found at i:36947238 original size:48 final size:48
Alignment explanation
Indices: 36947209--36947388 Score: 261
Period size: 48 Copynumber: 3.8 Consensus size: 48
36947199 AAGTCTCATG
*
36947209 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATA
1 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
* * *
36947257 TCAATGCCGATGTCATGTCCCAGATATGATCTTACACTAGCTCACATA
1 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
* * * * * *
36947305 TCAACGTCGATGCCATGTTCCAGACATGATTTTACACTGGCTCACATA
1 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
*
36947353 TCAATGCCGATGCCATGTCCCACACATGGTCTTACA
1 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
36947389 GCGGATCTCA
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (48 bp):
TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
Found at i:36947573 original size:30 final size:29
Alignment explanation
Indices: 36947537--36947598 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 29
36947527 TGTATCTTGT
36947537 AATATCAAATATTAAACACATAGTAATGGA
1 AATATCAAATATTAAACACATAGTAAT-GA
36947567 AATATCAAATATTAAACACATAGTAATGA
1 AATATCAAATATTAAACACATAGTAATGA
36947596 AAT
1 AAT
36947599 TGTTGAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 5 0.16
30 27 0.84
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.27
Consensus pattern (29 bp):
AATATCAAATATTAAACACATAGTAATGA
Found at i:36949807 original size:28 final size:26
Alignment explanation
Indices: 36949751--36949808 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 26
36949741 AAAATTATAT
* *
36949751 TTAATAATTTATTTTAAAATATTTCA
1 TTAATAATTTATTTTAAAATAATTAA
*
36949777 TTAATAATTTGGATTTTAAATTAATTAA
1 TTAATAATTT--ATTTTAAAATAATTAA
36949805 TTAA
1 TTAA
36949809 ATTGGATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 10 0.37
28 17 0.63
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (26 bp):
TTAATAATTTATTTTAAAATAATTAA
Found at i:36951522 original size:39 final size:40
Alignment explanation
Indices: 36951397--36951525 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
36951387 GCTACTCGTT
*
36951397 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36951437 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
36951477 CCAATGCCTTCGGG-CTTAGCTCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
36951516 CAAATGCCTT
1 CAAATGCCTT
36951526 TGGATCTTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 30 0.38
40 48 0.60
41 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36967780 original size:43 final size:43
Alignment explanation
Indices: 36967732--36967888 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
36967722 TGTGTTCTTG
*
36967732 TGTAAGACCACATCTGGGACGTTGGCATCGATATGTGATTTCGA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTC-A
* ***
36967776 -GTAAGACCATGTCTGGGACAAAGGCATCG-TAATTGTGA-TTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-A-TGTGATTTCA
* * *
36967818 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGACATGTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATGTGATTTCA
*
36967861 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
36967889 TGTACAATAT
Statistics
Matches: 91, Mismatches: 13, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
42 8 0.09
43 77 0.85
44 6 0.07
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCA
Found at i:36982241 original size:39 final size:39
Alignment explanation
Indices: 36982187--36982264 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
36982177 TATGAGACTG
36982187 TTGCCATGACAAAGGAGTGTAGTGCATTCCTGTAGAACA
1 TTGCCATGACAAAGGAGTGTAGTGCATTCCTGTAGAACA
*
36982226 TTGCCATGACAAAGGAGTGTAGTGCATTCTTGTAGAACA
1 TTGCCATGACAAAGGAGTGTAGTGCATTCCTGTAGAACA
36982265 AACTGCCACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (39 bp):
TTGCCATGACAAAGGAGTGTAGTGCATTCCTGTAGAACA
Found at i:36988051 original size:27 final size:26
Alignment explanation
Indices: 36988012--36988115 Score: 136
Period size: 27 Copynumber: 3.9 Consensus size: 26
36988002 GGAAGCGTCT
*
36988012 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAA-TATCTGATC
*
36988039 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACA-ATATCTGATC
36988066 TGGTGGCTCTGCCACAATATCTGTATC
1 TGGTGGCTCTGCCACAATATCTG-ATC
* * *
36988093 TGGTGACTTTGTCACAATATCTG
1 TGGTGGCTCTGCCACAATATCTG
36988116 GCAGCCTCAC
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 7 0.10
27 61 0.88
28 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGATC
Found at i:36991510 original size:25 final size:25
Alignment explanation
Indices: 36991482--36991534 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
36991472 CCATACTTAA
36991482 AAATAGTTACACTTTCAAAACTACC
1 AAATAGTTACACTTTCAAAACTACC
*
36991507 AAATATTTACACTTTCAAAACTACC
1 AAATAGTTACACTTTCAAAACTACC
36991532 AAA
1 AAA
36991535 ATGAAGTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (25 bp):
AAATAGTTACACTTTCAAAACTACC
Found at i:36998792 original size:48 final size:48
Alignment explanation
Indices: 36998692--36998813 Score: 129
Period size: 48 Copynumber: 2.5 Consensus size: 48
36998682 AGGTCTAGTG
* ** * * *
36998692 TAAGAGCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGAGCCAGTA
**
36998740 TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGA-CTTTGTA
1 TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGAGC-CAGTA
* * *
36998788 TAAGACCATATTTGGGATATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
36998814 AATATGTGGA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
47 1 0.02
48 61 0.98
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGAGCCAGTA
Found at i:37005499 original size:4 final size:4
Alignment explanation
Indices: 37005492--37005556 Score: 55
Period size: 4 Copynumber: 15.8 Consensus size: 4
37005482 GAGGACGGGG
*
37005492 GAAA GAAA GGGAAA GAAA GAGA -AAA GAAA GAAA GGAAA GAAA GAAAA
1 GAAA GAAA --GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GAAA G-AAA
37005539 GAAA G--A GAAA GGAAA GAA
1 GAAA GAAA GAAA -GAAA GAA
37005557 GAAGAGAGGG
Statistics
Matches: 51, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
2 2 0.04
3 2 0.04
4 31 0.61
5 12 0.24
6 4 0.08
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:37005528 original size:24 final size:23
Alignment explanation
Indices: 37005492--37005561 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 23
37005482 GAGGACGGGG
37005492 GAAAGAAAGGGAAAGAAAGAGAAAA
1 GAAAGAAA-GGAAAGAAA-AGAAAA
37005517 GAAAGAAAGGAAAG-AAAGAAAA
1 GAAAGAAAGGAAAGAAAAGAAAA
37005539 GAAAGAGAAAGGAAAGAAGAAGA
1 G-AA-AGAAAGGAAAGAA-AAGA
37005562 GAGGGAGAGC
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
22 7 0.17
23 4 0.10
24 17 0.41
25 9 0.22
26 4 0.10
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (23 bp):
GAAAGAAAGGAAAGAAAAGAAAA
Found at i:37005529 original size:9 final size:9
Alignment explanation
Indices: 37005491--37005556 Score: 63
Period size: 9 Copynumber: 7.9 Consensus size: 9
37005481 AGAGGACGGG
37005491 GGAAAGAAA
1 GGAAAGAAA
37005500 GGGAAAGAAA
1 -GGAAAGAAA
37005510 -G--AGAAA
1 GGAAAGAAA
*
37005516 AGAAAGAAA
1 GGAAAGAAA
37005525 GGAAAGAAA
1 GGAAAGAAA
*
37005534 GAAAAGAAA
1 GGAAAGAAA
37005543 -G--AGAAA
1 GGAAAGAAA
37005549 GGAAAGAA
1 GGAAAGAA
37005557 GAAGAGAGGG
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
6 10 0.21
7 2 0.04
8 1 0.02
9 25 0.53
10 9 0.19
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (9 bp):
GGAAAGAAA
Found at i:37007670 original size:33 final size:33
Alignment explanation
Indices: 37007621--37007686 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
37007611 TCTAATTCTT
* *
37007621 AAACGCTATTTCGGTATTCTAAAAATGAGTTTC
1 AAACACTATTTCGGTATTCTAAAAACGAGTTTC
* *
37007654 AAACACTATTTTGGTATTCTGAAAACGAGTTTC
1 AAACACTATTTCGGTATTCTAAAAACGAGTTTC
37007687 TGACACCGAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (33 bp):
AAACACTATTTCGGTATTCTAAAAACGAGTTTC
Found at i:37008203 original size:17 final size:17
Alignment explanation
Indices: 37008181--37008214 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37008171 TTTAAAGTTC
*
37008181 TATCGGTGGCTACGTCG
1 TATCGGTGGCAACGTCG
37008198 TATCGGTGGCAACGTCG
1 TATCGGTGGCAACGTCG
37008215 ATAAGTTGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.24, G:0.35, T:0.26
Consensus pattern (17 bp):
TATCGGTGGCAACGTCG
Found at i:37019150 original size:29 final size:27
Alignment explanation
Indices: 37019066--37019165 Score: 85
Period size: 29 Copynumber: 3.5 Consensus size: 27
37019056 ATGCATATAA
* *
37019066 CCCACTAGGCCCAATCTTATTCAAATGG
1 CCCACTAGGCCCAAT-TAATTCATATGG
* *
37019094 CCCATCTA-GCCCAGTTAATATTCTTATGG
1 CCCA-CTAGGCCCAATT-A-ATTCATATGG
*
37019123 CCCACTAGGCCCAATTGACCTTCATATGG
1 CCCACTAGGCCCAATT-A-ATTCATATGG
*
37019152 CCCATTAGGCCCAA
1 CCCACTAGGCCCAA
37019166 ATCATATTAT
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
27 1 0.02
28 13 0.22
29 44 0.76
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (27 bp):
CCCACTAGGCCCAATTAATTCATATGG
Found at i:37019279 original size:19 final size:19
Alignment explanation
Indices: 37019246--37019292 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
37019236 TGGGCCCAAC
*
37019246 AGCCCATT-AGGCCCATTT
1 AGCCCATTCTGGCCCATTT
37019264 AGCCCATTCTGGCCCATTT
1 AGCCCATTCTGGCCCATTT
* *
37019283 TGCCAATTCT
1 AGCCCATTCT
37019293 CAACCCCAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.32
Consensus pattern (19 bp):
AGCCCATTCTGGCCCATTT
Found at i:37020783 original size:37 final size:37
Alignment explanation
Indices: 37020733--37020811 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37020723 TTATTACGAA
* *
37020733 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
37020770 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
37020807 GTCTT
1 GTCTT
37020812 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:37021008 original size:47 final size:47
Alignment explanation
Indices: 37020930--37021445 Score: 888
Period size: 47 Copynumber: 10.9 Consensus size: 47
37020920 CCCTTCGGGA
* * * * * *
37020930 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37020977 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
37021024 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
37021071 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
37021118 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
37021165 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
37021212 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
37021259 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
37021306 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37021353 CTTATCACATATATACACTTTCATATTCGTCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37021400 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCAC--ATGTATACACTTTCACATTCATCACATCGGCCATTA
37021446 CGCCATACTA
Statistics
Matches: 450, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
47 416 0.92
49 34 0.08
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37021906 original size:74 final size:74
Alignment explanation
Indices: 37021785--37021930 Score: 258
Period size: 74 Copynumber: 2.0 Consensus size: 74
37021775 AATCTGACCA
37021785 CTCTTCACTACGAATCAAATTTCTCATTTTACAGAATTCAAAATGTGTTGTAGTTGATTTCATTT
1 CTCTTCACTACGAATCAAATTTCTCATTTTACAGAATTCAAAATGTGTTGTAGTTGATTTCATTT
37021850 GAAACTACG
66 GAAACTACG
* *
37021859 CTCTTCACTACGAAT-AAATTTTCTCATTTTGCAGAATTCAAAATGTGTTGTATTTGATTTCATT
1 CTCTTCACTACGAATCAAA-TTTCTCATTTTACAGAATTCAAAATGTGTTGTAGTTGATTTCATT
37021923 TGAAACTA
65 TGAAACTA
37021931 GACTCATTAA
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
73 3 0.04
74 66 0.96
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (74 bp):
CTCTTCACTACGAATCAAATTTCTCATTTTACAGAATTCAAAATGTGTTGTAGTTGATTTCATTT
GAAACTACG
Found at i:37024410 original size:16 final size:16
Alignment explanation
Indices: 37024390--37024442 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
37024380 CCAACTTTTA
*
37024390 GCTTTTCAGCCTTTCG
1 GCTTTTCAGCATTTCG
* *
37024406 AC-TTTC-GACTTTTCG
1 GCTTTTCAG-CATTTCG
37024421 GCTTTTCAGCATTTCG
1 GCTTTTCAGCATTTCG
37024437 GCTTTT
1 GCTTTT
37024443 GCCGATTCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 1 0.03
15 11 0.37
16 17 0.57
17 1 0.03
ACGTcount: A:0.09, C:0.26, G:0.17, T:0.47
Consensus pattern (16 bp):
GCTTTTCAGCATTTCG
Found at i:37025673 original size:16 final size:16
Alignment explanation
Indices: 37025652--37025682 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37025642 AAAAATTCAA
37025652 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
*
37025668 GATTTCGGGATTTTT
1 GATTTCGAGATTTTT
37025683 AGGGTGTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.26, T:0.52
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:37026217 original size:16 final size:17
Alignment explanation
Indices: 37026186--37026218 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37026176 TGGGGGTTGT
*
37026186 CAAATTCTTGGCTATAG
1 CAAAATCTTGGCTATAG
37026203 CAAAATCTT-GCTATAG
1 CAAAATCTTGGCTATAG
37026219 TTGTCATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (17 bp):
CAAAATCTTGGCTATAG
Found at i:37027534 original size:34 final size:35
Alignment explanation
Indices: 37027451--37027536 Score: 97
Period size: 34 Copynumber: 2.5 Consensus size: 35
37027441 GATTCTTTGT
* *
37027451 CTGCATACTG-TACTGATATGGGCTAAGGCCCAAA
1 CTGCTTACTGTTACTGAAATGGGCTAAGGCCCAAA
* * * *
37027485 CTGCTTTC-ATCACTGAAATGGGCTAAGGCCCAGA
1 CTGCTTACTGTTACTGAAATGGGCTAAGGCCCAAA
37027519 CTG-TTACTGTTACTGAAA
1 CTGCTTACTGTTACTGAAA
37027537 AGAGGTTAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
33 3 0.07
34 38 0.93
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (35 bp):
CTGCTTACTGTTACTGAAATGGGCTAAGGCCCAAA
Found at i:37032197 original size:7 final size:7
Alignment explanation
Indices: 37032185--37032222 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
37032175 CATAACATGC
37032185 ATATATT
1 ATATATT
37032192 ATATATT
1 ATATATT
37032199 ATATATT
1 ATATATT
37032206 -TA-A-T
1 ATATATT
37032210 ATATATT
1 ATATATT
37032217 ATATAT
1 ATATAT
37032223 ATGAATCGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
4 1 0.04
5 3 0.11
6 3 0.11
7 21 0.75
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
ATATATT
Found at i:37032197 original size:9 final size:9
Alignment explanation
Indices: 37032191--37032224 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
37032181 ATGCATATAT
37032191 TATATATTA
1 TATATATTA
37032200 TATAT-TTAA
1 TATATATT-A
37032209 TATATATTA
1 TATATATTA
37032218 TATATAT
1 TATATAT
37032225 GAATCGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TATATATTA
Found at i:37033785 original size:16 final size:17
Alignment explanation
Indices: 37033756--37033797 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
37033746 TTGGTGTAAT
*
37033756 TATATAT-ATATAATTTG
1 TATATATAAT-TAATATG
37033773 TAT-TATAATTAATATG
1 TATATATAATTAATATG
37033789 TATATATAA
1 TATATATAA
37033798 AATTTTGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (17 bp):
TATATATAATTAATATG
Found at i:37035618 original size:22 final size:24
Alignment explanation
Indices: 37035563--37035609 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
37035553 AAATTTTTAA
37035563 TAAATTAAAATAATTATTAAATAT
1 TAAATTAAAATAATTATTAAATAT
37035587 TAAATTAAAATAA-TA-TAAATAT
1 TAAATTAAAATAATTATTAAATAT
37035609 T
1 T
37035610 TTTTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.35
23 2 0.09
24 13 0.57
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TAAATTAAAATAATTATTAAATAT
Found at i:37041216 original size:58 final size:57
Alignment explanation
Indices: 37041096--37041215 Score: 132
Period size: 58 Copynumber: 2.1 Consensus size: 57
37041086 TCATTTTTAT
* * * * * *
37041096 TTTTTATTTTTATTTTGGAGAAAACCACATTTATTTCCAAATGACTCTATTTCTCCA
1 TTTTTATTTTCATTTTGGAAAAAACCACAATCATTTCCAAATGACTCCATTTATCCA
* ** *
37041153 TTTTTATTTTCATTTTGGAAAAAAACCATAATCATTTCCAAATGTTTCCCATTTATCTA
1 TTTTTATTTTCATTTTGG-AAAAAACCACAATCATTTCCAAATGACT-CCATTTATCCA
37041212 TTTT
1 TTTT
37041216 ACCATTTTTA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
57 17 0.33
58 22 0.43
59 12 0.24
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (57 bp):
TTTTTATTTTCATTTTGGAAAAAACCACAATCATTTCCAAATGACTCCATTTATCCA
Found at i:37042738 original size:37 final size:37
Alignment explanation
Indices: 37042667--37042778 Score: 134
Period size: 37 Copynumber: 3.0 Consensus size: 37
37042657 GTTTAAGCAA
* * * *
37042667 ACATTTAGTATAATCAATAGACATTTCTCTTTTGAGC
1 ACATTCAGTATATTCAATAGACATTGCTCGTTTGAGC
* * *
37042704 TCATTCAGTATATTCAGTAGGCATTGCTCGTTTGAGC
1 ACATTCAGTATATTCAATAGACATTGCTCGTTTGAGC
* * *
37042741 AAATTCAGTATATTCAATACATATTGCTCGTTTGAGC
1 ACATTCAGTATATTCAATAGACATTGCTCGTTTGAGC
37042778 A
1 A
37042779 TACTTTTAGT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (37 bp):
ACATTCAGTATATTCAATAGACATTGCTCGTTTGAGC
Found at i:37042844 original size:13 final size:13
Alignment explanation
Indices: 37042826--37042854 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37042816 CATACTTTCA
37042826 GTAGAATCAGTGG
1 GTAGAATCAGTGG
37042839 GTAGAATCAGTGG
1 GTAGAATCAGTGG
37042852 GTA
1 GTA
37042855 TGGCTCGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.07, G:0.38, T:0.24
Consensus pattern (13 bp):
GTAGAATCAGTGG
Found at i:37069584 original size:39 final size:39
Alignment explanation
Indices: 37069541--37069616 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
37069531 TATGTATGAG
* *
37069541 ATTGTATGACATCTTGCATATGCATTGGGGTAGGTTATT
1 ATTGTATGACATATTGCATATGCATTAGGGTAGGTTATT
*
37069580 ATTGTATGACATATTGCATGTGCATTAGGGTAGGTTA
1 ATTGTATGACATATTGCATATGCATTAGGGTAGGTTA
37069617 CTCTGATAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.25, C:0.09, G:0.26, T:0.39
Consensus pattern (39 bp):
ATTGTATGACATATTGCATATGCATTAGGGTAGGTTATT
Found at i:37069774 original size:30 final size:29
Alignment explanation
Indices: 37069718--37069804 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
37069708 GGGGATCTGG
*
37069718 CAATTTTATCACAATTATTCGTTATTTGT
1 CAATTTTATCGCAATTATTCGTTATTTGT
*
37069747 CAATTCTATCGCAATTATTCAGTTATTTTGT
1 CAATTTTATCGCAATTATTC-GTTA-TTTGT
* * *
37069778 -GATTTTATCGCATTTATTCGTTGTTTG
1 CAATTTTATCGCAATTATTCGTTATTTG
37069805 GAAGATTTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.08
29 21 0.42
30 20 0.40
31 5 0.10
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.52
Consensus pattern (29 bp):
CAATTTTATCGCAATTATTCGTTATTTGT
Found at i:37069812 original size:30 final size:29
Alignment explanation
Indices: 37069720--37069823 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
37069710 GGATCTGGCA
* *
37069720 ATTTTATCACAATTATTCGTTATTTGTCA-
1 ATTTTATCGCAATTATTCGTTATTTG-GAG
* * *
37069749 ATTCTATCGCAATTATTCAGTTATTTTGTG
1 ATTTTATCGCAATTATTC-GTTATTTGGAG
* *
37069779 ATTTTATCGCATTTATTCGTTGTTTGGAAG
1 ATTTTATCGCAATTATTCGTTATTTGG-AG
*
37069809 ATTTTCT-GCAATTAT
1 ATTTTATCGCAATTAT
37069824 ACCCATTTGG
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
29 30 0.50
30 30 0.50
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.51
Consensus pattern (29 bp):
ATTTTATCGCAATTATTCGTTATTTGGAG
Found at i:37073947 original size:28 final size:29
Alignment explanation
Indices: 37073897--37073962 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
37073887 CTTTCATTTA
* * *
37073897 TTTCACAATTTAACTCCTCAATTTACACT
1 TTTCTCAAATTAACTCCTCAATTGACACT
* *
37073926 TTTCTCAAATTAA-TCCTTAATTGACATT
1 TTTCTCAAATTAACTCCTCAATTGACACT
*
37073954 TTTGTCAAA
1 TTTCTCAAA
37073963 AACCTCTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 20 0.65
29 11 0.35
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.44
Consensus pattern (29 bp):
TTTCTCAAATTAACTCCTCAATTGACACT
Found at i:37076860 original size:30 final size:30
Alignment explanation
Indices: 37076824--37076923 Score: 121
Period size: 30 Copynumber: 3.3 Consensus size: 30
37076814 AAATAGTATA
*
37076824 AATATTATATTAAATTTAATATTTCATATT
1 AATATTAAATTAAATTTAATATTTCATATT
** * *
37076854 AATATTAAATT-AATAAAATATTATCTAGATG
1 AATATTAAATTAAATTTAATATT-TC-ATATT
*
37076885 AATATTAAATTAAATTTAATATCTCATATT
1 AATATTAAATTAAATTTAATATTTCATATT
37076915 AATATTAAA
1 AATATTAAA
37076924 CTAATAAAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
29 9 0.16
30 24 0.42
31 16 0.28
32 8 0.14
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (30 bp):
AATATTAAATTAAATTTAATATTTCATATT
Found at i:37076890 original size:31 final size:30
Alignment explanation
Indices: 37076853--37076969 Score: 112
Period size: 31 Copynumber: 3.8 Consensus size: 30
37076843 TATTTCATAT
37076853 TAATATTAAATTAATAAAATATTATCTAGA
1 TAATATTAAATTAATAAAATATTATCTAGA
** * *
37076883 TGAATATTAAATTAAATTTAATA-TCTCATA-T
1 T-AATATTAAATT-AATAAAATATTATC-TAGA
* *
37076914 TAATATTAAACTAATAAAATACTATCTAGA
1 TAATATTAAATTAATAAAATATTATCTAGA
*
37076944 TATATATTAAATTAAATTAAATATTA
1 TA-ATATTAAATT-AATAAAATATTA
37076970 AATTTATTAA
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
29 9 0.13
30 16 0.24
31 24 0.35
32 19 0.28
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (30 bp):
TAATATTAAATTAATAAAATATTATCTAGA
Found at i:37076919 original size:61 final size:60
Alignment explanation
Indices: 37076824--37076967 Score: 225
Period size: 61 Copynumber: 2.4 Consensus size: 60
37076814 AAATAGTATA
* * * *
37076824 AATATTATATTAAATTTAATATTTCATATTAATATTAAATTAATAAAATATTATCTAGAT
1 AATATTAAATTAAATTTAATATCTCATATTAATATTAAACTAATAAAATACTATCTAGAT
37076884 GAATATTAAATTAAATTTAATATCTCATATTAATATTAAACTAATAAAATACTATCTAGAT
1 -AATATTAAATTAAATTTAATATCTCATATTAATATTAAACTAATAAAATACTATCTAGAT
*
37076945 ATATATTAAATTAAATTAAATAT
1 A-ATATTAAATTAAATTTAATAT
37076968 TAAATTTATT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
60 1 0.01
61 76 0.99
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (60 bp):
AATATTAAATTAAATTTAATATCTCATATTAATATTAAACTAATAAAATACTATCTAGAT
Found at i:37078043 original size:35 final size:35
Alignment explanation
Indices: 37078003--37078075 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
37077993 AGTATCGTTC
*
37078003 CGATAATTCATAATTTACTTAA-CTATGGAGTCAGT
1 CGATAATTCACAATTTACTTAATC-ATGGAGTCAGT
37078038 CGATAATTCACAATTTACTTAATCATGGAGTCAGT
1 CGATAATTCACAATTTACTTAATCATGGAGTCAGT
37078073 CGA
1 CGA
37078076 CAAGAAGTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 35 0.97
36 1 0.03
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (35 bp):
CGATAATTCACAATTTACTTAATCATGGAGTCAGT
Found at i:37081929 original size:20 final size:20
Alignment explanation
Indices: 37081904--37081970 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
37081894 ATTTTGATAT
*
37081904 ACATGAT-TGATATGACATGC
1 ACATGATATG-TATGATATGC
*
37081924 ACATGATACGTATGATATGC
1 ACATGATATGTATGATATGC
*
37081944 ACATGTTATGTATGATATGC
1 ACATGATATGTATGATATGC
37081964 ACATGAT
1 ACATGAT
37081971 GTATTCATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
20 40 0.98
21 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37082048 original size:26 final size:26
Alignment explanation
Indices: 37082019--37082091 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
37082009 GAGGAAGTGC
37082019 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTACCG
37082045 AAAAGGGCTTATGCCCCT-GTTTACCG
1 AAAAGGGCTTATG-CCCTAGTTTACCG
*
37082071 AAAAGGGCTTATGCCCCAGTT
1 AAAAGGGCTTATGCCCTAGTT
37082092 ATTAAAAAGA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 3 0.07
26 37 0.84
27 4 0.09
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCTAGTTTACCG
Found at i:37082353 original size:31 final size:31
Alignment explanation
Indices: 37082318--37082381 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
37082308 CGTTTGCAGT
*
37082318 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGCCCCAGTAATATGAAATATGA
*
37082349 AAAGGCTTCGCCCCAGTATTATGAAATATGA
1 AAAGGCTTCGCCCCAGTAATATGAAATATGA
37082380 AA
1 AA
37082382 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGCCCCAGTAATATGAAATATGA
Found at i:37090018 original size:20 final size:20
Alignment explanation
Indices: 37089993--37090059 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
37089983 ATTTTGATAT
*
37089993 ACATGAT-TGATATGACATGC
1 ACATGATATG-TATGATATGC
37090013 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37090033 ACATGTTATGTATGATATGC
1 ACATGATATGTATGATATGC
37090053 ACATGAT
1 ACATGAT
37090060 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37090138 original size:26 final size:27
Alignment explanation
Indices: 37090109--37090182 Score: 132
Period size: 27 Copynumber: 2.8 Consensus size: 27
37090099 GAGGAAGTGC
*
37090109 AAAAGGGCTTATGCCCTAGTTTACCGA
1 AAAAGGGCTTATGCCCCAGTTTACCGA
37090136 AAAAGGGCTTATGCCCCAGTTTACCG-
1 AAAAGGGCTTATGCCCCAGTTTACCGA
37090162 AAAAGGGCTTATGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
37090183 ATTAAAAAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
26 21 0.46
27 25 0.54
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (27 bp):
AAAAGGGCTTATGCCCCAGTTTACCGA
Found at i:37090444 original size:31 final size:31
Alignment explanation
Indices: 37090409--37090472 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
37090399 CGTTTGCAGT
37090409 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
37090440 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37090471 AA
1 AA
37090473 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37105663 original size:19 final size:19
Alignment explanation
Indices: 37105621--37105663 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
37105611 GGGACACGCT
* **
37105621 TGTGTGCTCTCGACATGCC
1 TGTGTGCTCTCAACACACC
*
37105640 CGTGTGCTCTCAACACACC
1 TGTGTGCTCTCAACACACC
37105659 TGTGT
1 TGTGT
37105664 CCTCAGACCG
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.14, C:0.33, G:0.23, T:0.30
Consensus pattern (19 bp):
TGTGTGCTCTCAACACACC
Found at i:37110437 original size:48 final size:48
Alignment explanation
Indices: 37110283--37110430 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
37110273 ATATATACAC
* **
37110283 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
37110331 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
37110379 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
37110427 ATCT
1 ATCT
37110431 TGTACATCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:37111746 original size:26 final size:27
Alignment explanation
Indices: 37111701--37111753 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
37111691 TTAAATTCTG
* *
37111701 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
37111728 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
37111754 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:37123135 original size:40 final size:39
Alignment explanation
Indices: 37122946--37123128 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 39
37122936 GAATGATGTA
* * * *
37122946 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AAC
* * *
37122986 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-AC
*
37123026 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-C
* *
37123065 CGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAC
*
37123105 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
37123129 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
Found at i:37123151 original size:79 final size:79
Alignment explanation
Indices: 37122997--37123161 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
37122987 GGACTAAGAT
* **
37122997 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
37123062 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* * *
37123076 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
37123139 TATATCCG-GTTAAATT
63 TAAATCCGAGTTAAATC
37123155 CCGAAGG
1 CCGAAGG
37123162 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:37141924 original size:23 final size:23
Alignment explanation
Indices: 37141898--37141944 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
37141888 GGTTTGTAGA
37141898 CGCAATCAAACATTTGACAATTT
1 CGCAATCAAACATTTGACAATTT
*
37141921 CGCAATCAAACATTTGACGATTT
1 CGCAATCAAACATTTGACAATTT
37141944 C
1 C
37141945 TACACTTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (23 bp):
CGCAATCAAACATTTGACAATTT
Found at i:37147164 original size:27 final size:27
Alignment explanation
Indices: 37147126--37147180 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
37147116 NNNNNNNNNN
37147126 TGTAAATCGAGGGTAAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
*
37147153 TGTAAATCGAGGGTAAAATGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
37147180 T
1 T
37147181 ATCTTATTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.29
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAACGGTAATTC
Found at i:37147225 original size:27 final size:25
Alignment explanation
Indices: 37147195--37147279 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
37147185 TATTTCAGTG
37147195 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
37147222 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATC-GAGGTA-TTTGGTA
* *
37147249 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
37147276 ATTT
1 ATTT
37147280 GGTAAACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.08
27 38 0.79
28 6 0.12
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:37150279 original size:49 final size:49
Alignment explanation
Indices: 37150197--37150563 Score: 570
Period size: 49 Copynumber: 7.7 Consensus size: 49
37150187 GTATATTTGA
*
37150197 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
*
37150244 ATAAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
37150293 ATGAATGTGAAAGTGTATATATATGT--TAAGGCCGAATGACCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
37150340 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
37150389 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
37150438 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
37150487 ATGAATGTGAAAGTGTATATATA--TGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
*
37150534 ATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGAATGTGAAAGTGTATATATATGTGATAAG
37150564 TCCCGAAGGG
Statistics
Matches: 296, Mismatches: 18, Indels: 12
0.91 0.06 0.04
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 99 0.33
49 195 0.66
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (49 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:37150361 original size:96 final size:96
Alignment explanation
Indices: 37150197--37150563 Score: 560
Period size: 96 Copynumber: 3.8 Consensus size: 96
37150187 GTATATTTGA
* * * *
37150197 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-AGCCGATGTGATAAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGTATATATATGATAAGGCCGAATGA-CCAATGTGATGAATGTGAAAGTGTA
37150261 TATATATGTGATAAGGCCTAATGGCCGATGTG
65 TATATATGTGATAAGGCCTAATGGCCGATGTG
*
37150293 ATGAATGTGAAAGTGTATATATATGTTAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATATGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTAT
37150358 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
37150389 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATA--TGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGT
37150454 ATATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
37150487 ATGAATGTGAAAGTGTATATATATGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATATGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTAT
37150552 A-A-ATGTGATAAG
66 ATATATGTGATAAG
37150564 TCCCGAAGGG
Statistics
Matches: 252, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
94 10 0.04
95 1 0.00
96 148 0.59
97 1 0.00
98 92 0.37
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATATGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:37150458 original size:145 final size:146
Alignment explanation
Indices: 37150197--37150563 Score: 568
Period size: 145 Copynumber: 2.6 Consensus size: 146
37150187 GTATATTTGA
* *
37150197 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37150260 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT-TAAGG
66 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTATAAGG
37150324 CCGAATGACCAATGTG
131 CCGAATGACCAATGTG
37150340 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37150405 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
66 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT-ATAAG
* * *
37150470 GCCTAATGGCCGATGTG
130 GCCGAATGACCAATGTG
* * * * * * *
37150487 ATGAATGTGAAAGTGTATATATA--TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37150550 ATA-A-ATGTGATAAG
66 ATATATATGTGATAAG
37150564 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
143 25 0.12
144 1 0.00
145 141 0.68
147 41 0.20
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (146 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTATAAGG
CCGAATGACCAATGTG
Found at i:37150738 original size:37 final size:37
Alignment explanation
Indices: 37150682--37150760 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37150672 CCGAGCTCTA
* * *
37150682 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
37150719 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37150756 AAGAC
1 AAGAC
37150761 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37152103 original size:43 final size:44
Alignment explanation
Indices: 37152046--37152160 Score: 121
Period size: 42 Copynumber: 2.7 Consensus size: 44
37152036 AATGCCAACA
* *
37152046 TCCCAGACGTGGTCTTACATGTAATCACAT-ATCGATG-CCACTG
1 TCCCAGACATGGTCTTACATGTAATCACATAAACGATGTCCA-TG
* * * **
37152089 TCCCAGACAAGGTCTTACACG-AA-CTCATAAACGATGTTGATG
1 TCCCAGACATGGTCTTACATGTAATCACATAAACGATGTCCATG
37152131 TCCCAGACATGGTCTTACATGTAAATCACA
1 TCCCAGACATGGTCTTACATGT-AATCACA
37152161 AATTAGTGCC
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
41 4 0.07
42 29 0.51
43 19 0.33
44 2 0.04
45 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACATGTAATCACATAAACGATGTCCATG
Found at i:37158225 original size:40 final size:40
Alignment explanation
Indices: 37158127--37158709 Score: 913
Period size: 40 Copynumber: 14.6 Consensus size: 40
37158117 TCCTCGTTCA
* * * ** *
37158127 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
37158166 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37158206 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37158246 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
37158286 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
37158326 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
37158366 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37158406 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37158446 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37158486 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37158526 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
37158566 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
37158606 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
37158646 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
37158686 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37158710 CAGCATTCAA
Statistics
Matches: 517, Mismatches: 22, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
39 37 0.07
40 472 0.91
41 8 0.02
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:37166439 original size:40 final size:40
Alignment explanation
Indices: 37166391--37166778 Score: 722
Period size: 40 Copynumber: 9.7 Consensus size: 40
37166381 GCAAACACAT
* *
37166391 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37166431 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37166471 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
37166511 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37166551 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37166591 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37166631 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37166671 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37166711 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37166751 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
37166779 TCCAATGCTC
Statistics
Matches: 338, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 338 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:37177754 original size:15 final size:16
Alignment explanation
Indices: 37177725--37177754 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37177715 GAAAAATGAT
37177725 TTAACACATTATCAAA
1 TTAACACATTATCAAA
37177741 TTAACACA-TATCAA
1 TTAACACATTATCAA
37177755 TAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:37186395 original size:25 final size:25
Alignment explanation
Indices: 37186367--37186464 Score: 85
Period size: 25 Copynumber: 3.9 Consensus size: 25
37186357 ACGAGCTATG
*
37186367 AATCAGTATGCTCTCACGAGCTGCA
1 AATCAGTAAGCTCTCACGAGCTGCA
* *
37186392 AATCAATAAGCT-TATACGAGCTG-A
1 AATCAGTAAGCTCT-CACGAGCTGCA
* *
37186416 GAATCGGTAAGCTCTCACGAGTTGCA
1 -AATCAGTAAGCTCTCACGAGCTGCA
**
37186442 AATTGGTAAGCTCAT-ACGAGCTG
1 AATCAGTAAGCTC-TCACGAGCTG
37186465 AGTGTGGTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
24 2 0.03
25 54 0.92
26 3 0.05
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (25 bp):
AATCAGTAAGCTCTCACGAGCTGCA
Found at i:37186420 original size:50 final size:50
Alignment explanation
Indices: 37186352--37186466 Score: 151
Period size: 50 Copynumber: 2.3 Consensus size: 50
37186342 TTCCTGTACA
*
37186352 CTCATACGAGCT-ATGAATCAGTATGCTCTCACGAGCTGCAAATCAATAAG
1 CTCATACGAGCTGA-GAATCAGTAAGCTCTCACGAGCTGCAAATCAATAAG
* * * ***
37186402 CTTATACGAGCTGAGAATCGGTAAGCTCTCACGAGTTGCAAATTGGTAAG
1 CTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCAATAAG
37186452 CTCATACGAGCTGAG
1 CTCATACGAGCTGAG
37186467 TGTGGTTTGT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 55 0.98
51 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (50 bp):
CTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCAATAAG
Found at i:37196011 original size:28 final size:28
Alignment explanation
Indices: 37195971--37196030 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
37195961 AGTATCAATA
* *
37195971 CAGTTTGGGCCTTAGCCCTATACAGTAT
1 CAGTGTGGGCCTTAGCCCAATACAGTAT
**
37195999 CAGTGTGGGCCTTAGCCCAATGTAGTAT
1 CAGTGTGGGCCTTAGCCCAATACAGTAT
37196027 CAGT
1 CAGT
37196031 ACCATGTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (28 bp):
CAGTGTGGGCCTTAGCCCAATACAGTAT
Found at i:37196439 original size:27 final size:27
Alignment explanation
Indices: 37196379--37196443 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
37196369 GGGCATAATC
*
37196379 GTTATTTTACCATACAGGGGTATTACA
1 GTTATTTTACCATACAAGGGTATTACA
* * **
37196406 GTCATTTTACCCTACAAGGGTATTATG
1 GTTATTTTACCATACAAGGGTATTACA
37196433 GTTATTTTACC
1 GTTATTTTACC
37196444 TAACTAGGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (27 bp):
GTTATTTTACCATACAAGGGTATTACA
Found at i:37196452 original size:27 final size:26
Alignment explanation
Indices: 37196379--37196453 Score: 64
Period size: 27 Copynumber: 2.8 Consensus size: 26
37196369 GGGCATAATC
37196379 GTTATTTTACC-ATACAGGGGTATTACA
1 GTTATTTTACCTA-ACA-GGGTATTACA
* **
37196406 GTCATTTTACCCT-ACAAGGGTATTATG
1 GTTATTTTA-CCTAAC-AGGGTATTACA
37196433 GTTATTTTACCTAACTAGGGT
1 GTTATTTTACCTAAC-AGGGT
37196454 CTCAGTACAT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
26 3 0.08
27 33 0.85
28 3 0.08
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (26 bp):
GTTATTTTACCTAACAGGGTATTACA
Found at i:37212304 original size:43 final size:43
Alignment explanation
Indices: 37212227--37212312 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
37212217 ACAATGCCAA
*
37212227 TGTCCCAGACGTGGTCTTACATGTAACCACATATCGATGTCAC
1 TGTCCCAGACGTGGTCTTACATGTAACCACATATCGAAGTCAC
*
37212270 TGTCCCAGACAG-GGTCTTAC-TCGT-ACACATATATCGAAGTCAC
1 TGTCCCAGAC-GTGGTCTTACAT-GTAAC-CACATATCGAAGTCAC
37212313 ATATCAATGC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 34 0.89
44 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (43 bp):
TGTCCCAGACGTGGTCTTACATGTAACCACATATCGAAGTCAC
Found at i:37217387 original size:39 final size:40
Alignment explanation
Indices: 37217292--37217514 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
37217282 TTGAATGATG
*
37217292 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
37217330 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
37217371 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37217410 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
37217449 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
37217488 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37217515 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37217478 original size:79 final size:81
Alignment explanation
Indices: 37217292--37217514 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
37217282 TTGAATGATG
* * *
37217292 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
37217354 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
37217371 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
37217432 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
37217449 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
37217513 TG
66 TG
37217515 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:37217536 original size:79 final size:79
Alignment explanation
Indices: 37217292--37217547 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
37217282 TTGAATGATG
* * * *
37217292 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
37217353 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
37217371 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
37217435 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
37217449 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
37217512 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
37217529 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37217548 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:37218951 original size:40 final size:40
Alignment explanation
Indices: 37218907--37219019 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 40
37218897 CTCAATATCA
* *
37218907 CACACACAAAGTGTCGTACATAGCCGAAGCTATCTCAAAT
1 CACACACAAAGTGCCATACATAGCCGAAGCTATCTCAAAT
* * * * *
37218947 CACACACTAAGTGCCATATATAGTCGAAGCTATGTCGAAT
1 CACACACAAAGTGCCATACATAGCCGAAGCTATCTCAAAT
* ** * *
37218987 CGCACACTCAGTGCCATATATAGCCAAAGCTAT
1 CACACACAAAGTGCCATACATAGCCGAAGCTAT
37219020 GTTGTACCGC
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (40 bp):
CACACACAAAGTGCCATACATAGCCGAAGCTATCTCAAAT
Found at i:37219020 original size:40 final size:40
Alignment explanation
Indices: 37218926--37219042 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
37218916 AGTGTCGTAC
* * *
37218926 ATAGCCGAAGCTATCTCAAATCACACACTAAGTGCCATAT
1 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
* *
37218966 ATAGTCGAAGCTATGTCGAATCGCACACTCAGTGCCATAT
1 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
* * * *
37219006 ATAGCCAAAGCTATGTTGTACCGCACACTAAGTGCCA
1 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCA
37219043 CAAATAATCG
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
Found at i:37223560 original size:18 final size:18
Alignment explanation
Indices: 37223537--37223571 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37223527 ACGATGTGCC
*
37223537 AAACTATTTTCATGCTTG
1 AAACTATTTTAATGCTTG
37223555 AAACTATTTTAATGCTT
1 AAACTATTTTAATGCTT
37223572 ACTATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (18 bp):
AAACTATTTTAATGCTTG
Found at i:37225891 original size:39 final size:40
Alignment explanation
Indices: 37225654--37225895 Score: 350
Period size: 40 Copynumber: 6.1 Consensus size: 40
37225644 GATGATAACA
* *
37225654 AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCG
37225694 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
37225734 AAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCG
*
37225774 AAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
*
37225814 AAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
* * * *
37225853 AAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCG
1 AAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCG
37225892 AAGG
1 AAGG
37225896 TACTTGGTTT
Statistics
Matches: 186, Mismatches: 11, Indels: 11
0.89 0.05 0.05
Matches are distributed among these distances:
38 5 0.03
39 38 0.20
40 141 0.76
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
Found at i:37229765 original size:43 final size:43
Alignment explanation
Indices: 37229702--37229809 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 43
37229692 GGATTTACGG
* *
37229702 TATGTGATTGCATGTAAGACCATGTATGGGACA-TCGGTATCGTA
1 TATGTGATTACATGTAAGACCATGTATGGGACAGT-GGCATCG-A
* * * *
37229746 TATGTGATT-CGTGTAAGACCCTGTTTGGGATAGTGGCATCGA
1 TATGTGATTACATGTAAGACCATGTATGGGACAGTGGCATCGA
37229788 TATGTGATTACATGTAAGACCA
1 TATGTGATTACATGTAAGACCA
37229810 CGCCTGGGAC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
42 10 0.18
43 35 0.64
44 10 0.18
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (43 bp):
TATGTGATTACATGTAAGACCATGTATGGGACAGTGGCATCGA
Found at i:37229826 original size:43 final size:43
Alignment explanation
Indices: 37229702--37229827 Score: 114
Period size: 43 Copynumber: 2.9 Consensus size: 43
37229692 GGATTTACGG
* * * *
37229702 TATGTGATTGCATGTAAGACCATGTATGGGACATCGGTATCGTA
1 TATGTGATT-CATGTAAGACCACGTATGGGACGTTGGCATCGTA
* * *
37229746 TATGTGATTCGTGTAAGACC-CTGTTTGGGATAG-TGGCATCG-A
1 TATGTGATTCATGTAAGACCAC-GTATGGGA-CGTTGGCATCGTA
**
37229788 TATGTGATTACATGTAAGACCACGCCTGGGACGTTGGCAT
1 TATGTGATT-CATGTAAGACCACGTATGGGACGTTGGCAT
37229828 TATACGATAT
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
42 11 0.17
43 45 0.68
44 10 0.15
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
TATGTGATTCATGTAAGACCACGTATGGGACGTTGGCATCGTA
Found at i:37234909 original size:23 final size:24
Alignment explanation
Indices: 37234862--37234909 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
37234852 ATCTGTTCAG
*
37234862 TAAAAAATGTCATGTTTATTCTGA
1 TAAAAAATGTCATGATTATTCTGA
37234886 TAAAAAATGTC-TGAATTATT-TGA
1 TAAAAAATGTCATG-ATTATTCTGA
37234909 T
1 T
37234910 GACTCAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (24 bp):
TAAAAAATGTCATGATTATTCTGA
Found at i:37248205 original size:28 final size:28
Alignment explanation
Indices: 37248123--37248209 Score: 131
Period size: 29 Copynumber: 3.0 Consensus size: 28
37248113 TGAGGATGAC
37248123 TATAAATGTGAATTGGGCCT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
*
37248152 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
37248181 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
37248209 T
1 T
37248210 CTACAGGTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
28 18 0.33
29 36 0.67
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:37248520 original size:27 final size:27
Alignment explanation
Indices: 37248490--37248545 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
37248480 AAAACCGTAA
* ** *
37248490 TAAAAGGAAAAATTACCGAAATGCCCC
1 TAAAAGAAAAAAAGACCGAAATACCCC
37248517 T-AAAGAAAAAAAGACCGAAATACCCC
1 TAAAAGAAAAAAAGACCGAAATACCCC
37248543 TAA
1 TAA
37248546 GGGTTTAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.54, C:0.21, G:0.12, T:0.12
Consensus pattern (27 bp):
TAAAAGAAAAAAAGACCGAAATACCCC
Found at i:37251074 original size:43 final size:43
Alignment explanation
Indices: 37251002--37251112 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
37250992 ATAGGATTTA
37251002 CGATATGTGATTGCGTGTAAGACCATGTCTAGGACA-TCGACAT
1 CGATATGTGATTGCGTGTAAGACCATGTCTAGGACAGT-GACAT
* * *
37251045 CGTATATGTGATT-CGTGTATGACCCTGTCTAGGACAGTGGCAT
1 CG-ATATGTGATTGCGTGTAAGACCATGTCTAGGACAGTGACAT
* *
37251088 CGATATGTGATTACATGTAAGACCA
1 CGATATGTGATTGCGTGTAAGACCA
37251113 CTTCTGGGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
42 10 0.17
43 38 0.64
44 11 0.19
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
CGATATGTGATTGCGTGTAAGACCATGTCTAGGACAGTGACAT
Found at i:37255513 original size:79 final size:81
Alignment explanation
Indices: 37255377--37255559 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
37255367 TCGAATGATG
* *
37255377 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
37255441 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
37255456 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
37255518 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
37255536 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
37255560 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:37255575 original size:40 final size:40
Alignment explanation
Indices: 37255378--37255561 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
37255368 CGAATGATGT
* * * *
37255378 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
37255418 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
37255458 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37255496 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37255537 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37255562 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37255583 original size:79 final size:79
Alignment explanation
Indices: 37255430--37255594 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
37255420 GGACTAAGAT
* **
37255430 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
37255495 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37255509 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
37255572 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37255588 CCGAAGG
1 CCGAAGG
37255595 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37259950 original size:48 final size:48
Alignment explanation
Indices: 37259882--37260200 Score: 214
Period size: 48 Copynumber: 6.6 Consensus size: 48
37259872 TGTGCTAGTG
* *
37259882 TAAGACCATGTCTGGGACATGGCGTCGGGC-ACGATATGAGAGCCAGTA
1 TAAGACCATGTCTGGAACATGGCATC-GGCAACGATATGAGAGCCAGTA
* * * * * *
37259930 TAAGACTATGTTTGGAACATGGCATCGGCAATGTTATGAGATCCAGTG
1 TAAGACCATGTCTGGAACATGGCATCGGCAACGATATGAGAGCCAGTA
* * *** * * *
37259978 TAAGACCATGTCCGGGACATGGCATCGGCGTTGTTA-G-GTGCACTAGTG
1 TAAGACCATGTCTGGAACATGGCATCGGCAACGATATGAGAGC-C-AGTA
* * * * * *
37260026 TAAGAACATGTCTGGGACATGACAACGGCCAC-ATTATGAGAGCCAGTG
1 TAAGACCATGTCTGGAACATGGCATCGGCAACGA-TATGAGAGCCAGTA
* * * ** * * * *
37260074 TAAGACCATGTTTTGTACATGGCATCGGCATTGAGACGAGAGCTAGCA
1 TAAGACCATGTCTGGAACATGGCATCGGCAACGATATGAGAGCCAGTA
* ** * * *
37260122 TAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTG
1 TAAGACCATGTCTGGAACATGGCATCGGCAACGATATGAGAGCCAGTA
* **
37260170 TAAGACCATGTTTGGGGCATGGCATCGGCAA
1 TAAGACCATGTCTGGAACATGGCATCGGCAA
37260201 TTTGCCCTCT
Statistics
Matches: 210, Mismatches: 54, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
46 2 0.01
47 5 0.02
48 197 0.94
49 3 0.01
50 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTGGAACATGGCATCGGCAACGATATGAGAGCCAGTA
Found at i:37260046 original size:96 final size:95
Alignment explanation
Indices: 37259878--37260199 Score: 290
Period size: 96 Copynumber: 3.4 Consensus size: 95
37259868 TATGTGTGCT
* * * * * * *
37259878 AGTGTAAGACCATGTCTGGGACATGGCGTCGGGCA-CGATATGAGAGCCAGTATAAG-ACTATGT
1 AGTGTAAGACCATGTTTGGGACATGGCATC-GGCATTGAGACGAGAGCTAGCATAAGAAC-ATGT
* * *
37259941 TTGGAACATGGCATCGGCAATGTTATGAGATCC
64 CTGGGACATGGCATCGGC-ATGTTATGAGAGCC
** * ** * * **
37259974 AGTGTAAGACCATGTCCGGGACATGGCATCGGCGTTGTTAGGTGCA-CTAGTGTAAGAACATGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAG-AGCTAGCATAAGAACATGTC
* * **
37260038 TGGGACATGACAACGGCCACATTATGAGAGCC
65 TGGGACATGGCATCGG-CATGTTATGAGAGCC
* * *
37260070 AGTGTAAGACCATGTTTTGTACATGGCATCGGCATTGAGACGAGAGCTAGCATAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCTAGCATAAGAACATGTCT
* ** *
37260135 GGGACATGGCATCGGCCTCGACATGTGAGCC
66 GGGACATGGCATCGGCAT-GTTATGAGAGCC
*
37260166 AGTGTAAGACCATGTTTGGGGCATGGCATCGGCA
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA
37260200 ATTTGCCCTC
Statistics
Matches: 181, Mismatches: 39, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
95 5 0.03
96 172 0.95
97 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (95 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCTAGCATAAGAACATGTCT
GGGACATGGCATCGGCATGTTATGAGAGCC
Found at i:37260139 original size:144 final size:144
Alignment explanation
Indices: 37259876--37260150 Score: 372
Period size: 144 Copynumber: 1.9 Consensus size: 144
37259866 GATATGTGTG
* * ** * *
37259876 CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGGCACGATATGAGAGCCAGTATAAGACTATGT
1 CTAGTGTAAGAACATGTCTGGGACATGACAACGGCCACGATATGAGAGCCAGTATAAGACCATGT
** * * **
37259941 TTGGAACATGGCATCGGCAATGTTATGAGATCCAGTGTAAGACCATGTCCGGGACATGGCATCGG
66 TTGGAACATGGCATCGGCAATGAGACGAGAGCCAGCATAAGACCATGTCCGGGACATGGCATCGG
37260006 CGTTGTTAGGTGCA
131 CGTTGTTAGGTGCA
*
37260020 CTAGTGTAAGAACATGTCTGGGACATGACAACGGCCAC-ATTATGAGAGCCAGTGTAAGACCATG
1 CTAGTGTAAGAACATGTCTGGGACATGACAACGGCCACGA-TATGAGAGCCAGTATAAGACCATG
* * * * *
37260084 TTTTGTACATGGCATCGGCATTGAGACGAGAGCTAGCATAAGACCATGTCTGGGACATGGCATCG
65 TTTGGAACATGGCATCGGCAATGAGACGAGAGCCAGCATAAGACCATGTCCGGGACATGGCATCG
37260149 GC
130 GC
37260151 CTCGACATGT
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
143 1 0.01
144 111 0.99
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (144 bp):
CTAGTGTAAGAACATGTCTGGGACATGACAACGGCCACGATATGAGAGCCAGTATAAGACCATGT
TTGGAACATGGCATCGGCAATGAGACGAGAGCCAGCATAAGACCATGTCCGGGACATGGCATCGG
CGTTGTTAGGTGCA
Found at i:37260170 original size:144 final size:144
Alignment explanation
Indices: 37259869--37260190 Score: 369
Period size: 144 Copynumber: 2.2 Consensus size: 144
37259859 TTTGGGTGAT
* * ** *
37259869 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGGCACGATATGAGAGCCAGTATAAG
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGACAACGGCCACGATATGAGAGCCAGTATAAG
* ** * * **
37259934 ACTATGTTTGGAACATGGCATCGGCAATGTTATGAGATCCAGTGTAAGACCATGTCCGGGACATG
66 ACCATGTTTGGAACATGGCATCGGCAATGAGACGAGAGCCAGCATAAGACCATGTCCGGGACATG
* * **
37259999 GCATCGGCGTTGTT
131 GCATCGGCCTCGAC
* * *
37260013 AGGTGCA-CTAGTGTAAGAACATGTCTGGGACATGACAACGGCCAC-ATTATGAGAGCCAGTGTA
1 ATGTG-AGCTAGTGTAAGACCATGTCTGGGACATGACAACGGCCACGA-TATGAGAGCCAGTATA
* * * * *
37260076 AGACCATGTTTTGTACATGGCATCGGCATTGAGACGAGAGCTAGCATAAGACCATGTCTGGGACA
64 AGACCATGTTTGGAACATGGCATCGGCAATGAGACGAGAGCCAGCATAAGACCATGTCCGGGACA
37260141 TGGCATCGGCCTCGAC
129 TGGCATCGGCCTCGAC
* * *
37260157 ATGTGAGCCAGTGTAAGACCATGTTTGGGGCATG
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATG
37260191 GCATCGGCAA
Statistics
Matches: 146, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
143 2 0.01
144 144 0.99
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (144 bp):
ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGACAACGGCCACGATATGAGAGCCAGTATAAG
ACCATGTTTGGAACATGGCATCGGCAATGAGACGAGAGCCAGCATAAGACCATGTCCGGGACATG
GCATCGGCCTCGAC
Found at i:37263638 original size:40 final size:40
Alignment explanation
Indices: 37263555--37263817 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
37263545 TTGAATGCTG
* * * * * *
37263555 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
37263595 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
37263635 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
37263675 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
37263715 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37263755 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37263794 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37263818 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:37263837 original size:79 final size:80
Alignment explanation
Indices: 37263594--37263852 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
37263584 AAGTGAATAT
* * * * * *
37263594 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
37263658 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
37263674 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
37263739 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
37263754 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
37263818 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
37263833 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
37263853 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:37271590 original size:40 final size:40
Alignment explanation
Indices: 37271507--37271769 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
37271497 TTGAATGCTG
* * * * * *
37271507 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
37271547 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
37271587 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
37271627 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
37271667 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37271707 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37271746 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37271770 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:37271789 original size:79 final size:80
Alignment explanation
Indices: 37271546--37271804 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
37271536 AAGTGAATAT
* * * * * *
37271546 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
37271610 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
37271626 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
37271691 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
37271706 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
37271770 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
37271785 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
37271805 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:37276310 original size:27 final size:27
Alignment explanation
Indices: 37276280--37276371 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
37276270 ATTACCAAAC
*
37276280 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
37276307 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
37276334 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
37276361 TACCCTCGATT
1 TACCCTCGATT
37276372 GTGAAATTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:37276433 original size:27 final size:27
Alignment explanation
Indices: 37276403--37276526 Score: 162
Period size: 27 Copynumber: 4.6 Consensus size: 27
37276393 TATAAGGTAG
*
37276403 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * *
37276430 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
37276457 AATTACCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
37276484 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
37276511 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
37276527 TTGACTTTCT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
26 5 0.06
27 78 0.90
28 4 0.05
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:37276444 original size:54 final size:54
Alignment explanation
Indices: 37276384--37276502 Score: 154
Period size: 54 Copynumber: 2.2 Consensus size: 54
37276374 GAAATTATTG
*
37276384 AAATACCCCTA-TAAGGT-AGAATTACCAAAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCCTAGT-AGGTGA-AATTACCAAAATACCCTC-AATTTGTAAAATTACCA
* **
37276438 AAATACCACTAGTTTGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCCTAGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCA
37276492 AAATACCCCTA
1 AAATACCCCTA
37276503 ATTTACAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
54 54 0.95
55 3 0.05
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.27
Consensus pattern (54 bp):
AAATACCCCTAGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCA
Found at i:37276514 original size:54 final size:55
Alignment explanation
Indices: 37276403--37276583 Score: 174
Period size: 54 Copynumber: 3.3 Consensus size: 55
37276393 TATAAGGTAG
* * ***
37276403 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAATTTACAA
*
37276457 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAATTTACAA
* * * * **
37276511 AATTA-CAGAAATACCCT-TGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTCT-AATTTGT-AAAATTACCA-AAATACCACTAATTTACAA
*
37276567 AATTACTAAAATACCCT
1 AATTACCAAAATACCCT
37276584 TGGTTTGTAG
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
53 2 0.02
54 60 0.57
55 7 0.07
56 36 0.34
57 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (55 bp):
AATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAATTTACAA
Found at i:37276578 original size:27 final size:28
Alignment explanation
Indices: 37276538--37276589 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
37276528 TGACTTTCTA
*
37276538 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACTAGAAATACCCTTGGTTTAC
37276565 AAAATTACTA-AAATACCCTTGGTTT
1 AAAATTACTAGAAATACCCTTGGTTT
37276590 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (28 bp):
AAAATTACTAGAAATACCCTTGGTTTAC
Found at i:37276719 original size:27 final size:27
Alignment explanation
Indices: 37276643--37276707 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
37276633 ACCCCTAATA
* *
37276643 GGTAAAAAGACCGTAA-AGCCTCTGTAG
1 GGTAAAATGACCGTAATACCCT-TGTAG
*
37276670 GGTAAAATGACCGTAATACCCTTGTAT
1 GGTAAAATGACCGTAATACCCTTGTAG
37276697 GGTAAAATGAC
1 GGTAAAATGAC
37276708 GAATATGCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 30 0.88
28 4 0.12
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCTTGTAG
Found at i:37277585 original size:24 final size:24
Alignment explanation
Indices: 37277516--37277592 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 24
37277506 AGGAAGTGCT
** * *
37277516 AAAAGGGCCATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCA-TTTATCA
37277541 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCC-ATTTATCA
* *
37277566 AAAAGGTCTTTGCCCCATTTATTA
1 AAAAGGGCTTTGCCCCATTTATCA
37277590 AAA
1 AAA
37277593 GAGGCTCGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
24 10 0.22
25 34 0.76
26 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCATTTATCA
Done.