Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 117 of 276
Found at i:37277857 original size:31 final size:31
Alignment explanation
Indices: 37277805--37277887 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
37277795 CACTTACAGT
*
37277805 AAAGGCTTCAG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
37277835 AAAGGCTTCGGCCCGGTGATATGTTTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
37277866 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
37277888 TCGAGACTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 15 0.31
31 33 0.69
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:37280786 original size:48 final size:48
Alignment explanation
Indices: 37280657--37280934 Score: 215
Period size: 48 Copynumber: 5.8 Consensus size: 48
37280647 TGACATGTCT
* * * * *
37280657 GCTAGTGTAAGACCATGTCT-GAGACATGACATCGGCCATGATATAAGA
1 GCTAGTGTAAGACCATGTCTAG-GACATGGCATCAGCAATGTTATGAGA
* * * *
37280705 GCCAGTATAAGACCAT-T-TTGGAACATGGAATCAGCAATGTTATGAGA
1 GCTAGTGTAAGACCATGTCTAGG-ACATGGCATCAGCAATGTTATGAGA
* ** * * *
37280752 GCTAGTGTAAAACCATGTCTAGGACATGGCATCAGCGTTGTTAGGTGC
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAATGTTATGAGA
* * * * * **
37280800 GCTAGTGTAAGACCATGTTTGGGACATGGCAACAACGACATTATGAGA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAATGTTATGAGA
* * * ** *
37280848 GCCAGTGTAAGACCATGTTTAGGACATGGCATCAGC-CTCGACATGTG-
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAAT-GTTATGAGA
* *
37280895 GGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAAT
1 GCT-AGTGTAAGACCATGTCTAGGACATGGCATCAGCAAT
37280935 TTACCCTCTT
Statistics
Matches: 179, Mismatches: 44, Indels: 13
0.76 0.19 0.06
Matches are distributed among these distances:
46 2 0.01
47 35 0.20
48 138 0.77
49 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAATGTTATGAGA
Found at i:37280856 original size:96 final size:96
Alignment explanation
Indices: 37280744--37280926 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 96
37280734 ATCAGCAATG
* * * **
37280744 TTATGAGAGCTAGTGTAAAACCATGTCTAGGACATGGCATCAGCGTTGTTAGGTGCGCT-AGTGT
1 TTATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATCAGCCTCGACAGGTG-GCTCAGTGT
*
37280808 AAGACCATGTTTGGGACATGGCAACAACGACA
65 AAGACCATGTCTGGGACATGGCAACAACGACA
* * * *
37280840 TTATGAGAGCCAGTGTAAGACCATGTTTAGGACATGGCATCAGCCTCGACATGTGGGTCAGTGTA
1 TTATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATCAGCCTCGACAGGTGGCTCAGTGTA
37280905 AGACCATGTCTGGGACATGGCA
66 AGACCATGTCTGGGACATGGCA
37280927 TCAGCAATTT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
95 2 0.03
96 74 0.97
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
TTATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATCAGCCTCGACAGGTGGCTCAGTGTA
AGACCATGTCTGGGACATGGCAACAACGACA
Found at i:37282618 original size:47 final size:47
Alignment explanation
Indices: 37282549--37282691 Score: 259
Period size: 47 Copynumber: 3.0 Consensus size: 47
37282539 TAGGAATCAC
37282549 ACAGAGTAAGCTACAAAGAGCTTAGTAAGCCAAATACAATTGATTTA
1 ACAGAGTAAGCTACAAAGAGCTTAGTAAGCCAAATACAATTGATTTA
*
37282596 ACAGAGTAAGCTACAAAGAGCTTAGTAAGCCAAATACAAATGATTTA
1 ACAGAGTAAGCTACAAAGAGCTTAGTAAGCCAAATACAATTGATTTA
* *
37282643 ACAGAGTAAGCTACAATGAGCTTAGTAAGCCAAATACAATTGGTTTA
1 ACAGAGTAAGCTACAAAGAGCTTAGTAAGCCAAATACAATTGATTTA
37282690 AC
1 AC
37282692 TATTAAATCA
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.23
Consensus pattern (47 bp):
ACAGAGTAAGCTACAAAGAGCTTAGTAAGCCAAATACAATTGATTTA
Found at i:37282888 original size:35 final size:34
Alignment explanation
Indices: 37282838--37282911 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 34
37282828 TTTCACAGAA
37282838 ACAAAGTCTTTCATATTTAGAAATTTAGTACGAT
1 ACAAAGTCTTTCATATTTAGAAATTTAGTACGAT
37282872 ACAAGAGTCTTTCATATTTAGAAATTTAGTACGAT
1 ACAA-AGTCTTTCATATTTAGAAATTTAGTACGAT
37282907 ACAAA
1 ACAAA
37282912 CGTACCTGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
34 5 0.13
35 34 0.87
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (34 bp):
ACAAAGTCTTTCATATTTAGAAATTTAGTACGAT
Found at i:37290097 original size:40 final size:40
Alignment explanation
Indices: 37290042--37290354 Score: 448
Period size: 40 Copynumber: 7.8 Consensus size: 40
37290032 ATTTGAATTT
* *
37290042 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
* *
37290082 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
*
37290122 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
** *
37290162 TATCCGGGCTAAGACCCGCTGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
* *
37290202 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG--ATA
*
37290244 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
*
37290284 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATA
** * *
37290324 TGCCCGGGTTAAGACCCGGAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
37290355 TTGTGGTAAT
Statistics
Matches: 254, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
39 3 0.01
40 211 0.83
41 3 0.01
42 37 0.15
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
Found at i:37290307 original size:162 final size:160
Alignment explanation
Indices: 37290042--37290341 Score: 492
Period size: 162 Copynumber: 1.9 Consensus size: 160
37290032 ATTTGAATTT
* *
37290042 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGTCCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
* *
37290107 TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCT
66 TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCT
37290172 AAGACCCGCTGGCATTTGTGCGAGTTGATA
131 AAGACCCGCTGGCATTTGTGCGAGTTGATA
* * *
37290202 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG--ATATATCCGGGCTAAGACCCGAAGGC
* *
37290267 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATGCCCGGG
64 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGG
*
37290332 TTAAGACCCG
129 CTAAGACCCG
37290342 GAGGCAATTG
Statistics
Matches: 128, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
160 33 0.26
162 95 0.74
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (160 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCT
AAGACCCGCTGGCATTTGTGCGAGTTGATA
Found at i:37294390 original size:43 final size:42
Alignment explanation
Indices: 37294333--37294482 Score: 169
Period size: 42 Copynumber: 3.5 Consensus size: 42
37294323 AATGCCGACA
* * *
37294333 TCCCAGAC-GTGGTCTTACATGTAATTCAGTATCGATGCCTCTG
1 TCCCAGACAG-GGTCTTACACGTAATTCA-AATCGATGCCTATG
* *
37294376 TCCCAGACAGGGTCTTACACG-AAATCAAATACAATGCCTATG
1 TCCCAGACAGGGTCTTACACGTAATTCAAAT-CGATGCCTATG
* *
37294418 TCCCAGACATGGTCTTACACGTAAATCTCAAATCGAGGCCTATG
1 TCCCAGACAGGGTCTTACACGT-AAT-TCAAATCGATGCCTATG
*
37294462 TCCCAGAGAGGGTCTTACACG
1 TCCCAGACAGGGTCTTACACG
37294483 ATATCTCAGA
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 34 0.37
43 18 0.20
44 31 0.34
45 6 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGTAATTCAAATCGATGCCTATG
Found at i:37311564 original size:12 final size:12
Alignment explanation
Indices: 37311532--37311566 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
37311522 TCGTGATATT
37311532 AGCATGGTAAT-
1 AGCATGGTAATG
37311543 AGCATGGTAATG
1 AGCATGGTAATG
*
37311555 AGCATAGTAATG
1 AGCATGGTAATG
37311567 GCCTGGGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.37, C:0.09, G:0.29, T:0.26
Consensus pattern (12 bp):
AGCATGGTAATG
Found at i:37318108 original size:43 final size:42
Alignment explanation
Indices: 37317996--37318157 Score: 125
Period size: 43 Copynumber: 3.8 Consensus size: 42
37317986 CAATGCCAAC
* * *
37317996 GTCCCAGACGTGGCCTTACATGT-AATCAAATATCGATGACATT
1 GTCCCAGACATGGTCTTACATGTAAATCAAATAT-GATG-CAAT
* * **
37318039 GTCCCAGACAGGGTCTTATA-CAAAATCAAATATGATGCTAAT
1 GTCCCAGACATGGTCTTACATGTAAATCAAATATGATGC-AAT
* *
37318081 GTCCCAGACATGATCTTACATGTAAATCTCAAAT-CGATGCCAAT
1 GTCCCAGACATGGTCTTACATGTAAA--TCAAATATGATG-CAAT
** * *
37318125 GTCCCAGATGTGGTCTTACACG-AAATCACATAT
1 GTCCCAGACATGGTCTTACATGTAAATCAAATAT
37318158 CGGAATCCTA
Statistics
Matches: 93, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
41 6 0.06
42 23 0.25
43 32 0.34
44 25 0.27
45 7 0.08
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAAATCAAATATGATGCAAT
Found at i:37318140 original size:86 final size:85
Alignment explanation
Indices: 37317996--37318157 Score: 193
Period size: 86 Copynumber: 1.9 Consensus size: 85
37317986 CAATGCCAAC
* * * *
37317996 GTCCCAGACGTGGCCTTACATGTAATCAAATATCGATGACATTGTCCCAGACAGGGTCTTATACA
1 GTCCCAGACATGACCTTACATGTAATCAAATATCGATGACAATGTCCCAGACAGGGTCTTACACA
37318061 AAATCAAATATGATGCTAAT
66 AAATCAAATATGATGCTAAT
* * * *
37318081 GTCCCAGACATGATCTTACATGTAAATCTCAA-ATCGATGCCAATGTCCCAGA-TGTGGTCTTAC
1 GTCCCAGACATGACCTTACATGT-AATC-AAATATCGATGACAATGTCCCAGACAG-GGTCTTAC
* *
37318144 ACGAAATCACATAT
63 ACAAAATCAAATAT
37318158 CGGAATCCTA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
85 21 0.33
86 41 0.64
87 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (85 bp):
GTCCCAGACATGACCTTACATGTAATCAAATATCGATGACAATGTCCCAGACAGGGTCTTACACA
AAATCAAATATGATGCTAAT
Found at i:37318142 original size:44 final size:44
Alignment explanation
Indices: 37317988--37318144 Score: 128
Period size: 44 Copynumber: 3.6 Consensus size: 44
37317978 AACTCGTACA
* * *
37317988 ATGCCAACGTCCCAGACGTGGCCTTACATGT-AATC-AAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAATCTCAA-ATCG
* * ** * *
37318031 ATGACATTGTCCCAGACAG-GGTCTT--ATACAAA-ATCAAATATG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAAATCTCAAAT-CG
* * *
37318073 ATGCTAATGTCCCAGACATGATCTTACATGTAAATCTCAAATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAATCTCAAATCG
*
37318117 ATGCCAATGTCCCAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
37318145 CGAAATCACA
Statistics
Matches: 84, Mismatches: 22, Indels: 15
0.69 0.18 0.12
Matches are distributed among these distances:
41 4 0.05
42 24 0.29
43 19 0.23
44 31 0.37
45 6 0.07
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAAATCTCAAATCG
Found at i:37325717 original size:43 final size:42
Alignment explanation
Indices: 37325670--37325815 Score: 138
Period size: 43 Copynumber: 3.4 Consensus size: 42
37325660 TCTCAGATGT
37325670 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATATCGATGCCA-TGTCCCAGACAG
* * * * * *
37325713 GGTCTTACACGAAATCAAATA-CGATGTCGATGTCCCAAAAAT
1 GGTCTTACATGTAATCAAATATCGATG-CCATGTCCCAGACAG
*
37325755 GGTCTTACATGTAAATTTC-AA-ATCGATGCCAATGTCCCAGGC-G
1 GGTCTTACATGT-AA--TCAAATATCGATGCC-ATGTCCCAGACAG
37325798 TGGTCTTACATGTAATCA
1 -GGTCTTACATGTAATCA
37325816 CATACCAGAA
Statistics
Matches: 82, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.02
42 24 0.29
43 27 0.33
44 27 0.33
45 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATATCGATGCCATGTCCCAGACAG
Found at i:37329456 original size:6 final size:6
Alignment explanation
Indices: 37329445--37329583 Score: 142
Period size: 6 Copynumber: 22.8 Consensus size: 6
37329435 AACCAAAATG
*
37329445 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * *
37329493 AG-GTGAC AGAATC AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAAT--C AGAATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
37329542 AGAATC AGAATC AGAATT ACGTGAT- AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
37329584 GTGAATGCAA
Statistics
Matches: 112, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
5 7 0.06
6 95 0.85
7 7 0.06
8 3 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:37329534 original size:67 final size:67
Alignment explanation
Indices: 37329445--37329583 Score: 242
Period size: 67 Copynumber: 2.1 Consensus size: 67
37329435 AACCAAAATG
*
37329445 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGACAGAATCAGAA
37329510 TC
66 TC
* * *
37329512 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGATAGAATCAGAA
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGACAGAATCAGAA
37329577 TC
66 TC
37329579 AGAAT
1 AGAAT
37329584 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (67 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGACAGAATCAGAA
TC
Found at i:37329738 original size:27 final size:26
Alignment explanation
Indices: 37329701--37329766 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
37329691 AGCATGGCTG
*
37329701 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* **
37329727 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
37329754 CCAGAATCAGATA
1 CCAGAA-CAGATA
37329767 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:37329771 original size:27 final size:27
Alignment explanation
Indices: 37329720--37329772 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
37329710 ATATCGTGAC
* *
37329720 AGAGTCACCAGATACAGATATTGTGGT
1 AGAGCCACCAGATACAGATAATGTGGT
37329747 AGAGCCACCAGA-ATCAGATAATGTGG
1 AGAGCCACCAGATA-CAGATAATGTGG
37329773 CAAACCCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGT
Found at i:37329781 original size:27 final size:27
Alignment explanation
Indices: 37329725--37329782 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
37329715 GTGACAGAGT
* * * *
37329725 CACCAGATACAGATATTGTGGTAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
37329752 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
37329779 CACC
1 CACC
37329783 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:37329955 original size:22 final size:22
Alignment explanation
Indices: 37329907--37329965 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
37329897 GTAAATACAT
*
37329907 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
37329929 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
37329951 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
37329966 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:37330118 original size:27 final size:26
Alignment explanation
Indices: 37330053--37330134 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
37330043 TCGATCGGTC
* * *
37330053 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
37330079 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
37330106 AACAGATATTTGTGGCATAGCCGCCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
37330133 AA
1 AA
37330135 TGCTTCCTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:37330365 original size:27 final size:27
Alignment explanation
Indices: 37330334--37330530 Score: 110
Period size: 27 Copynumber: 7.3 Consensus size: 27
37330324 GGGGCAAAAT
*
37330334 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * *
37330361 TGTAATTCTACCCTAC-AGTGGTATTTC
1 GGTAATTTTACCCTACAAG-GGTATCTC
*
37330388 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATCTC
** * * * * *
37330415 AATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATCTC
* ** * *
37330442 GGTAATTCTGTCCTATAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * * * *
37330469 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
** * * *
37330496 GAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
*
37330523 AGTAATTT
1 GGTAATTT
37330531 CACAATCAAG
Statistics
Matches: 136, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
26 5 0.04
27 126 0.93
28 5 0.04
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATCTC
Found at i:37330400 original size:54 final size:54
Alignment explanation
Indices: 37330334--37330529 Score: 257
Period size: 54 Copynumber: 3.6 Consensus size: 54
37330324 GGGGCAAAAT
* * * * * *
37330334 GGTAATTTTACCCCACAAGGGTATCTCTGTAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
* * *
37330388 GGTATTTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
** *
37330442 GGTAATTCTGTCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
** *
37330496 GAAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
37330530 TCACAATCAA
Statistics
Matches: 121, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
Found at i:37330528 original size:81 final size:81
Alignment explanation
Indices: 37330336--37330529 Score: 221
Period size: 81 Copynumber: 2.4 Consensus size: 81
37330326 GGCAAAATGG
* * * * * ** * * *
37330336 TAATTTTACCCCACAAGGGTATCTCTGTAATTCTACCCTA-CAGTGGTATTTCGGTATTTCTACC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTGTCCTATAAG-GGTATTTCAGTAATTCTACC
37330400 CTACAAGGGTATTTCAA
65 CTACAAGGGTATTTCAA
* **
37330417 TAATTCTACCCTATAGGGGTATTTTGGTAATTCTGTCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTGTCCTATAAGGGTATTTCAGTAATTCTACCC
* *
37330482 TATAGGGGTATTTCGAA
66 TACAAGGGTATTTC-AA
37330499 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATT
37330530 TCACAATCAA
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
81 90 0.96
82 4 0.04
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTGTCCTATAAGGGTATTTCAGTAATTCTACCC
TACAAGGGTATTTCAA
Found at i:37330564 original size:27 final size:27
Alignment explanation
Indices: 37330534--37331022 Score: 593
Period size: 27 Copynumber: 18.1 Consensus size: 27
37330524 GTAATTTCAC
* *
37330534 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
37330561 AATCGAGCGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37330588 AA-CTGGGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * * **
37330615 AATCAAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37330642 AATCGAGGGTAAAACTGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
37330669 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
37330696 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
37330723 AA-CTGAAGGTAAAACGGTAATTCTGTG
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
37330750 AATCGAGGGTAAAACAGCAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
37330777 AA-CTGAGGGTAAAAC-GTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
37330803 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37330830 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
37330857 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
37330884 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
37330911 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37330938 AAGT-GAGGGTAAAACGATAATTCTGTA
1 AA-TCGAGGGTAAAACGGTAATTCTGTA
**
37330965 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37330992 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
37331019 AATC
1 AATC
37331023 AGGAGTACTT
Statistics
Matches: 398, Mismatches: 47, Indels: 33
0.83 0.10 0.07
Matches are distributed among these distances:
26 34 0.09
27 354 0.89
28 10 0.03
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:37336849 original size:79 final size:82
Alignment explanation
Indices: 37336726--37336910 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
37336716 GCTACTCGTT
* *
37336726 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37336789 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
37336806 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGTACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37336869 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37336886 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37336911 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37336910 original size:40 final size:40
Alignment explanation
Indices: 37336707--37336910 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
37336697 TGGAATTTAA
** *
37336707 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37336747 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37336787 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37336826 CCGGA-ATTAGTATCTCGTACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37336866 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37336906 CCGGA
1 CCGGA
37336911 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 94 0.68
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37341534 original size:38 final size:38
Alignment explanation
Indices: 37341490--37341648 Score: 210
Period size: 38 Copynumber: 4.1 Consensus size: 38
37341480 ATATGTTGGA
37341490 ATTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGT
1 ATTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGT
* *
37341528 AATATATCCGGGTTAAATTCCGTAGGCTTCGTGCTGGT
1 ATTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGT
* * *
37341566 ATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGT
1 ATTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGT
* * * *
37341604 ATTATATCTGAGTTTAAAGTCCCATAGGCTCCGTGCTGGT
1 ATTATATCCG-GGTTAAA-TCCCGTAGGCTTCGTGCTGGT
*
37341644 GTTAT
1 ATTAT
37341649 GTTTGGGTTT
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 78 0.75
39 6 0.06
40 20 0.19
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (38 bp):
ATTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGT
Found at i:37341570 original size:76 final size:78
Alignment explanation
Indices: 37341454--37341648 Score: 214
Period size: 76 Copynumber: 2.5 Consensus size: 78
37341444 ATTTGATGTG
* * * *** * * * *
37341454 TATCCGAGCTTAAAGACCCACAGGCTATATGTTGGAATTATATCCGGGTTAAATCCCGTAGGCTT
1 TATCCGAGGTTAAAGTCCCATAGGCTCCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
*
37341519 CGTGCTGGTAATA
66 AGTGCTGGTAATA
* * *
37341532 TATCCG-GGTTAAA-TTCCGTAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
1 TATCCGAGGTTAAAGTCCCATAGGCTCCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
*
37341595 AGTGCTGGTATTA
66 AGTGCTGGTAATA
* * *
37341608 TATCTGAGTTTAAAGTCCCATAGGCTCCGTGCTGGTGTTAT
1 TATCCGAGGTTAAAGTCCCATAGGCTCCGTGCTGGTATTAT
37341649 GTTTGGGTTT
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
76 55 0.58
77 12 0.13
78 28 0.29
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (78 bp):
TATCCGAGGTTAAAGTCCCATAGGCTCCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
AGTGCTGGTAATA
Found at i:37343255 original size:43 final size:43
Alignment explanation
Indices: 37343207--37343514 Score: 436
Period size: 43 Copynumber: 7.2 Consensus size: 43
37343197 GCATGAAACT
*
37343207 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTTGTGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
* *
37343250 CGGTGATGTGTATTCGGGCCTTTCTGCCTAGCAGGATTCGTGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
* *
37343293 CGGTGATGAGTATTTGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
37343336 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
* * *
37343379 CGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCTCCGTGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
** * * *
37343422 TAGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGCTCCGTGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
** * * * **
37343465 TAGTGATGTATATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
37343508 CGGTGAT
1 CGGTGAT
37343515 TCAAGCAAGG
Statistics
Matches: 243, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 243 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
Found at i:37346156 original size:47 final size:47
Alignment explanation
Indices: 37346097--37346428 Score: 495
Period size: 47 Copynumber: 7.1 Consensus size: 47
37346087 GAAATGATAG
*
37346097 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
37346144 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
37346191 AAAGGCCAAATGGCCGCTGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
37346238 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37346285 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37346332 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
37346378 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37346425 TAAG
1 TAAG
37346429 TCCCGAAGGG
Statistics
Matches: 262, Mismatches: 22, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
46 40 0.15
47 222 0.85
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:37346589 original size:37 final size:37
Alignment explanation
Indices: 37346547--37346625 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
37346537 CCGAGCTCTA
* * *
37346547 AAGACCCGATGACTACGTGTGGGGATTTTATCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
* *
37346584 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
37346621 AAGAC
1 AAGAC
37346626 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
Found at i:37352136 original size:38 final size:38
Alignment explanation
Indices: 37352075--37352263 Score: 229
Period size: 38 Copynumber: 4.9 Consensus size: 38
37352065 ATTTGATGTG
* *
37352075 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
37352115 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
*
37352153 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
37352191 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
37352229 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGG
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGG
37352264 TGTTATGTTT
Statistics
Matches: 134, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
37 2 0.01
38 94 0.70
39 13 0.10
40 25 0.19
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:37360053 original size:13 final size:13
Alignment explanation
Indices: 37360035--37360060 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37360025 AACAGCCTTG
37360035 ACACGGGCGTGTC
1 ACACGGGCGTGTC
37360048 ACACGGGCGTGTC
1 ACACGGGCGTGTC
37360061 CCTGCTGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:37361662 original size:19 final size:17
Alignment explanation
Indices: 37361638--37361673 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
37361628 ATGAACAAAA
37361638 GTGAAAATAGTGTAAATTG
1 GTGAAAATA-TG-AAATTG
37361657 GTGAAAATATGAAATTG
1 GTGAAAATATGAAATTG
37361674 AATTGGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 9 0.53
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (17 bp):
GTGAAAATATGAAATTG
Found at i:37392724 original size:40 final size:40
Alignment explanation
Indices: 37392687--37392991 Score: 420
Period size: 40 Copynumber: 7.7 Consensus size: 40
37392677 GCTACTCGTT
* * *
37392687 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
37392727 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37392767 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37392807 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37392847 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
37392887 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
37392926 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
37392967 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37392992 CATCATTCGA
Statistics
Matches: 242, Mismatches: 18, Indels: 10
0.90 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.13
40 196 0.81
41 13 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37401421 original size:43 final size:43
Alignment explanation
Indices: 37401349--37401462 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
37401339 TATCACATAC
* * * * * *
37401349 CGATGCCACTGTCCCGGACAGGGTCTTACATGAAATC-GATTAA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAT-A
* * *
37401392 CGATGCCAATGTCCAAGACATGGTTTTACACGTAATCTCAATA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATA
*
37401435 CAATGCCAATGTCCCAGACATGGTCTTA
1 CGATGCCAATGTCCCAGACATGGTCTTA
37401463 TAAGTAATCA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
43 56 0.97
44 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATA
Found at i:37403563 original size:6 final size:6
Alignment explanation
Indices: 37403542--37403737 Score: 132
Period size: 6 Copynumber: 31.8 Consensus size: 6
37403532 TATTAGAACT
* * * *
37403542 AGAATC AAAATG AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C
* * * * * *
37403591 AGAATC AAAATC AAAATC AAAATC AAAATT AGGTAA-C AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * * *
37403640 AGTATC AGGTAA-C AGAATC AGAATC AGAACC AAAATC AGAATT AGGTAA-C
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
37403690 AGAATC AGAATC AGTATC AGGTAAT- AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAAT
37403738 GTGAATGCCA
Statistics
Matches: 151, Mismatches: 24, Indels: 30
0.74 0.12 0.15
Matches are distributed among these distances:
5 10 0.07
6 123 0.81
7 10 0.07
8 8 0.05
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:37403595 original size:37 final size:37
Alignment explanation
Indices: 37403554--37403647 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
37403544 AATCAAAATG
* * *
37403554 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAAAATTAGGTAAC
* *
37403591 AGAATCAAAATCAAAATCAAAATCAAAATTAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAAAATTAGGTAAC
*
37403628 AGAATCAAAATCAGTATCAG
1 AGAATCAAAATCAGAATCAG
37403648 GTAACAGAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.52, C:0.14, G:0.15, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAAAATTAGGTAAC
Found at i:37403639 original size:25 final size:25
Alignment explanation
Indices: 37403605--37403665 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
37403595 TCAAAATCAA
*
37403605 AATCAAAATCAAAATTAGGTAACAG
1 AATCAAAATCAAAATCAGGTAACAG
**
37403630 AATCAAAATCAGTATCAGGTAACAG
1 AATCAAAATCAAAATCAGGTAACAG
*
37403655 AATCAGAATCA
1 AATCAAAATCA
37403666 GAACCAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.52, C:0.15, G:0.13, T:0.20
Consensus pattern (25 bp):
AATCAAAATCAAAATCAGGTAACAG
Found at i:37403640 original size:62 final size:62
Alignment explanation
Indices: 37403565--37403733 Score: 257
Period size: 62 Copynumber: 2.7 Consensus size: 62
37403555 GAATCAGAAT
* * * * *
37403565 CAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATCAAAATCAAAATCAAAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAAAATCAAAATTAGGTAA
* * *
37403627 CAGAATCAAAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAAAATCAAAATTAGGTAA
*
37403689 CAGAATCAGAATCAGTATCAGGTAATAGAATCAGAATCAGAATCA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCA
37403734 GAATGTGAAT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 96 1.00
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAAAATCAAAATTAGGTAA
Found at i:37403668 original size:37 final size:37
Alignment explanation
Indices: 37403627--37403737 Score: 129
Period size: 37 Copynumber: 3.0 Consensus size: 37
37403617 AATTAGGTAA
*
37403627 CAGAATCAAAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAAAATCAGAATCAGGTAACAGAATCAGAAT
* *
37403664 CAGAACCAAAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAAAATCAGAATCAGGTAACAGAATCAGAAT
* *
37403701 CAGTATCAGGTAAT-AGAATCA-G-AATCAGAATCAGAAT
1 CAGAATCA--AAATCAGAATCAGGTAA-CAGAATCAGAAT
37403738 GTGAATGCCA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
36 2 0.03
37 53 0.83
38 6 0.09
39 3 0.05
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (37 bp):
CAGAATCAAAATCAGAATCAGGTAACAGAATCAGAAT
Found at i:37403701 original size:25 final size:25
Alignment explanation
Indices: 37403652--37403734 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 25
37403642 TATCAGGTAA
* *
37403652 CAGAATCA-G-AATCAGAACCAAAAT
1 CAGAATCAGGTAA-CAGAATCAGAAT
*
37403676 CAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
* *
37403701 CAGTATCAGGTAATAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
37403726 CAGAATCAG
1 CAGAATCAG
37403735 AATGTGAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
24 7 0.14
25 41 0.82
26 2 0.04
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAGAAT
Found at i:37404279 original size:27 final size:27
Alignment explanation
Indices: 37404249--37404410 Score: 182
Period size: 27 Copynumber: 6.0 Consensus size: 27
37404239 AGGGGTAAAA
* * *
37404249 CGGTAATTTTACCCCACAAGGGTATCT
1 CGGTAATTCTACCCTACAAGGGTATTT
* *
37404276 CGGTAATTCTACCCTATAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
** *
37404303 TAGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* *
37404330 CGATATTTCTACCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
37404357 CGGTAATTCTACCCTA-AAGGGGTATTT
1 CGGTAATTCTACCCTACAA-GGGTATTT
** * *
37404384 TAGTAATTCTACCCTATAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
37404411 TNNNNNNNNN
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.02
27 112 0.97
28 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
CGGTAATTCTACCCTACAAGGGTATTT
Found at i:37404378 original size:81 final size:80
Alignment explanation
Indices: 37404254--37404410 Score: 269
Period size: 81 Copynumber: 1.9 Consensus size: 80
37404244 TAAAACGGTA
*
37404254 ATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTA
1 ATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCTA
37404319 CAGGGGTATTTCGAT
66 CAGGGGTATTTCGAT
* *
37404334 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCT
1 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCT
*
37404399 ATAGGGGTATTT
65 ACAGGGGTATTT
37404411 TNNNNNNNNN
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
80 4 0.06
81 68 0.94
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (80 bp):
ATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCTA
CAGGGGTATTTCGAT
Found at i:37412712 original size:46 final size:46
Alignment explanation
Indices: 37412660--37412831 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
37412650 TCTTGTAGTC
*
37412660 GATGCATGTCCCAGTCATGTCTTACACTAGCTTACGTCTCAAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGGCT
* * * *
37412706 GATGCATG-CCACAGACATGTGTTACACTAGCACT-CGTCTCAATGCC
1 GATGCATGTCC-CAGACATGTCTTACACTAGC-TTACGTCTCAAGGCT
* * * *
37412752 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTA--TATTATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG--CTTACGTCTCAAGGCT
*
37412800 GATGCATGTCCCAGGCATGTCTTACACTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT
37412832 CACAATAACC
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 51 0.50
47 25 0.24
48 21 0.20
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGGCT
Found at i:37416162 original size:37 final size:37
Alignment explanation
Indices: 37416112--37416190 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37416102 TTATTACGAA
* * *
37416112 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37416149 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37416186 GTCTT
1 GTCTT
37416191 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37416434 original size:49 final size:47
Alignment explanation
Indices: 37416309--37416694 Score: 610
Period size: 47 Copynumber: 8.1 Consensus size: 47
37416299 CCCTTCGGGA
* * * * * * *
37416309 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37416356 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37416403 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37416452 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37416501 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37416550 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37416597 CTTATCACATATATACTCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37416644 CTTATCACATATATACTCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37416691 CTTA
1 CTTA
37416695 CTATCATTTC
Statistics
Matches: 323, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 178 0.55
49 145 0.45
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37416559 original size:22 final size:22
Alignment explanation
Indices: 37416531--37416606 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
37416521 TTTCACATTC
37416531 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
* ** *** *
37416553 ATCACATATGTACACTTTCACATT
1 ATCACAT-CGGCCA-TTAGGCCTT
37416577 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
37416600 ATCACAT
1 ATCACAT
37416607 ATATACTCTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:37421083 original size:46 final size:46
Alignment explanation
Indices: 37421033--37421251 Score: 277
Period size: 46 Copynumber: 4.7 Consensus size: 46
37421023 TGGTTGAGCA
37421033 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37421079 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
37421125 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
37421170 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAAA-G
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAATG
* * *
37421218 -CTTGAGCTCGTTCAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37421252 GGGGCGGGTT
Statistics
Matches: 153, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
43 6 0.04
45 5 0.03
46 103 0.67
47 29 0.19
48 3 0.02
49 1 0.01
50 4 0.03
51 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:37421207 original size:93 final size:91
Alignment explanation
Indices: 37421033--37421249 Score: 271
Period size: 93 Copynumber: 2.4 Consensus size: 91
37421023 TGGTTGAGCA
* *
37421033 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAGGTCCGAACTCGTTGAGTTGA
37421098 GTCCGAGTTCACTTATGGATGC-AAATG
65 GTCCGAGTTCACTTATGGATGCGAAA-G
* *
37421125 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCATCCGAACTCGTTGAGT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AGG--TCCGAACTCGTTGAGT
*
37421188 TGAGTCCGAGTTCATTTATGGATGCGAAAG
62 TGAGTCCGAGTTCACTTATGGATGCGAAAG
* * *
37421218 -CTTGAGCTCGTTCAGTTGAGTCCGAGTTCACT
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACT
37421250 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
89 6 0.06
91 4 0.04
92 30 0.28
93 65 0.60
94 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (91 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAGGTCCGAACTCGTTGAGTTGAG
TCCGAGTTCACTTATGGATGCGAAAG
Found at i:37426997 original size:27 final size:27
Alignment explanation
Indices: 37426967--37427144 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37426957 ATATTGAGTC
* * * *
37426967 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37426994 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37427021 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37427049 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37427076 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37427103 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37427130 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37427145 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37427106 original size:82 final size:81
Alignment explanation
Indices: 37426988--37427143 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37426978 TGCTATATAA
* *
37426988 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37427053 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37427070 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37427134 CACTTAGTGC
65 CACTTAGTGC
37427144 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37439644 original size:52 final size:52
Alignment explanation
Indices: 37439570--37439672 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
37439560 TTAATTCCCA
*
37439570 AGCCTAGGGGCAAAAGTCTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAAG
1 AGCCTAGGGGCAAAAGGCTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAAG
* *
37439622 AGCCTAGGGGCAAAAGGGTAATTATGCAAAAGTTTAGGGGTAAAAGTGTAA
1 AGCCTAGGGGCAAAAGGCTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAA
37439673 TTTTTTTAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.39, C:0.10, G:0.30, T:0.21
Consensus pattern (52 bp):
AGCCTAGGGGCAAAAGGCTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAAG
Found at i:37440152 original size:46 final size:46
Alignment explanation
Indices: 37440102--37440964 Score: 1375
Period size: 46 Copynumber: 18.7 Consensus size: 46
37440092 TGGTTGAGCA
37440102 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440194 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440240 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
37440286 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTA-AC-TAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
37440330 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-C
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
37440377 ACCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTAGGGGAGGGC--ATG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA-TGGA-TGCAAATG
37440424 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440470 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440516 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440562 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440608 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440654 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440700 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440746 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
37440792 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
37440838 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
37440883 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-C
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
37440930 ACCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37440965 GGGGCGGGTT
Statistics
Matches: 765, Mismatches: 34, Indels: 36
0.92 0.04 0.04
Matches are distributed among these distances:
43 6 0.01
44 4 0.01
45 12 0.02
46 697 0.91
47 35 0.05
48 6 0.01
50 5 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:37446372 original size:27 final size:27
Alignment explanation
Indices: 37446342--37446727 Score: 380
Period size: 27 Copynumber: 14.3 Consensus size: 27
37446332 TTAGTTTACC
37446342 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
37446369 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37446396 AAATTATCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
37446423 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37446450 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ** *
37446477 AAATTACTAGAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37446504 AAATCACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
37446531 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37446558 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37446585 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37446612 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
37446639 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
37446666 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * * *
37446693 AAATTACCATAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
37446720 AAATTACC
1 AAATTACC
37446728 GTTTTACCCT
Statistics
Matches: 295, Mismatches: 62, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
26 4 0.01
27 287 0.97
28 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:37446671 original size:54 final size:54
Alignment explanation
Indices: 37446342--37446656 Score: 452
Period size: 54 Copynumber: 5.8 Consensus size: 54
37446332 TTAGTTTACC
* *
37446342 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
37446396 AAATTATCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
37446450 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
37446504 AAATCACCAAAATACCCCTGGCTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
37446558 AAATTACCAAAATACCCTTGGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATACCCTTGGTTTATA
* * *
37446612 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT
37446657 CGACCTGTAA
Statistics
Matches: 233, Mismatches: 26, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
53 1 0.00
54 231 0.99
55 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:37446735 original size:27 final size:27
Alignment explanation
Indices: 37446691--37446764 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
37446681 CCTCGACTTG
*
37446691 TAAAATTACCATAGTACCC-CTGATTTA
1 TAAAATTACCATAGTACCCTC-AATTTA
* **
37446718 TAAAATTACCGTTTTACCCTCAATTTA
1 TAAAATTACCATAGTACCCTCAATTTA
* * *
37446745 CAAAATTACCAAAATACCCT
1 TAAAATTACCATAGTACCCT
37446765 TGTAGGGTAG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.32
Consensus pattern (27 bp):
TAAAATTACCATAGTACCCTCAATTTA
Found at i:37447005 original size:27 final size:27
Alignment explanation
Indices: 37446748--37446998 Score: 358
Period size: 27 Copynumber: 9.3 Consensus size: 27
37446738 CAATTTACAA
* *
37446748 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37446775 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
37446802 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37446829 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
37446856 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37446883 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
37446910 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
37446937 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
37446964 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
37446991 AATTACCG
1 AATTACCG
37446999 GGATACCTTG
Statistics
Matches: 201, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 201 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:37447512 original size:27 final size:27
Alignment explanation
Indices: 37447482--37447579 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
37447472 ATTCTGTTAA
* *
37447482 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
37447509 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * * *
37447536 GTGGCTCTACCACAGTATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
37447563 GTGACTCTGTCACAATA
1 GTGGCTATGCCACAATA
37447580 GCTGACAACT
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
26 6 0.11
27 45 0.79
28 6 0.11
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:37447758 original size:6 final size:6
Alignment explanation
Indices: 37447743--37447833 Score: 53
Period size: 6 Copynumber: 14.8 Consensus size: 6
37447733 ATTCTGTTAC
* * * * *
37447743 CTGATA CTGATT CTGATT TTGATT ATG-TT ACCTGATA CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
37447792 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGA-TT CTGAT
37447834 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:37447775 original size:31 final size:31
Alignment explanation
Indices: 37447720--37447822 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
37447710 TTGCATTCAC
*
37447720 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
* *
37447752 ATTCTGATTTTGATTATGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
37447783 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
37447814 ATTCTGATT
1 ATTCTGATT
37447823 CTAGTTCTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
31 55 0.89
32 7 0.11
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:37453360 original size:47 final size:49
Alignment explanation
Indices: 37453268--37453363 Score: 151
Period size: 47 Copynumber: 2.0 Consensus size: 49
37453258 ATTCTAGAAG
37453268 TTTTTAGTATGAAATTGTATTGGAATATTAATGAGGAGATCTTAAATAGA
1 TTTTTAGTATGAAATTGTATT-GAATATTAATGAGGAGATCTTAAATAGA
* *
37453318 TTTTTAGTATGAAATTGT-TT-AATATTAATGATGAGGTCTTAAATAG
1 TTTTTAGTATGAAATTGTATTGAATATTAATGAGGAGATCTTAAATAG
37453364 CAATTTGACC
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
47 24 0.55
49 2 0.05
50 18 0.41
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (49 bp):
TTTTTAGTATGAAATTGTATTGAATATTAATGAGGAGATCTTAAATAGA
Found at i:37453998 original size:45 final size:46
Alignment explanation
Indices: 37453947--37454036 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
37453937 ATTATGCAAA
37453947 AGTTTAGGGGCAAAAGTGTAA-TTTTTTAAAGTTCGTATTAAATGT
1 AGTTTAGGGGCAAAAGTGTAATTTTTTTAAAGTTCGTATTAAATGT
37453992 AGTTTAGGGGCAAAAGTGTAATTTTTTTAAAGTTCGTATTAAATG
1 AGTTTAGGGGCAAAAGTGTAATTTTTTTAAAGTTCGTATTAAATG
37454037 CTGTTTTGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 21 0.48
46 23 0.52
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.40
Consensus pattern (46 bp):
AGTTTAGGGGCAAAAGTGTAATTTTTTTAAAGTTCGTATTAAATGT
Found at i:37454501 original size:46 final size:46
Alignment explanation
Indices: 37454451--37454620 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
37454441 TTGAGCATCC
* * *
37454451 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCT
* * * *
37454497 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CGTCT
* * *
37454544 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCT
37454590 -AAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
37454621 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 54 0.53
47 28 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCT
Found at i:37454604 original size:93 final size:93
Alignment explanation
Indices: 37454445--37454615 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
37454435 GGATGGTTGA
* * *
37454445 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAGT
37454510 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* **
37454538 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACGCCT-AAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAA-CTCGTTGAG
37454602 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
37454616 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37457109 original size:45 final size:45
Alignment explanation
Indices: 37457045--37457135 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
37457035 CAGCCAGTGT
*
37457045 AGGGAGCTCGAGATTTGTTAAACCCGAGTGCCAGCGGTGTGGTAG
1 AGGGAACTCGAGATTTGTTAAACCCGAGTGCCAGCGGTGTGGTAG
* *
37457090 AGGGAACTCGAGATTTGTTAAACTCGAGTGCTAGCGGTGTGGTAG
1 AGGGAACTCGAGATTTGTTAAACCCGAGTGCCAGCGGTGTGGTAG
37457135 A
1 A
37457136 AATCTTTTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.24, C:0.15, G:0.36, T:0.24
Consensus pattern (45 bp):
AGGGAACTCGAGATTTGTTAAACCCGAGTGCCAGCGGTGTGGTAG
Found at i:37460636 original size:40 final size:40
Alignment explanation
Indices: 37460542--37460686 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
37460532 TACTCGAATG
*
37460542 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
37460583 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
37460623 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
37460663 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
37460687 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:37468664 original size:40 final size:40
Alignment explanation
Indices: 37468570--37468714 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
37468560 TACTCGAATG
*
37468570 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
37468611 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
37468651 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
37468691 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
37468715 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:37473061 original size:46 final size:46
Alignment explanation
Indices: 37472915--37473062 Score: 167
Period size: 46 Copynumber: 3.2 Consensus size: 46
37472905 AGGCATCCGA
* * *
37472915 CCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGT
1 CCGAGTTCATTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGT
* * *
37472961 CCGAGTTC-TTGA-GG-TGTAACTAGGCATCCGAACTCGTTGAGTTGAGT
1 CCGAGTTCATTTATGGATGCAA--ACGC--CCGAACTCGTTGAGTTGAGT
* *
37473008 CCTAGTTCATTTATGGATGCAAACGCCCGAGCTCGTTGAGTTGAGT
1 CCGAGTTCATTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGT
37473054 CCGAGTTCA
1 CCGAGTTCA
37473063 CTTAGGGGCG
Statistics
Matches: 84, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
43 4 0.05
44 2 0.02
45 4 0.05
46 35 0.42
47 27 0.32
48 6 0.07
49 2 0.02
50 4 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAGTTCATTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGT
Found at i:37476788 original size:40 final size:40
Alignment explanation
Indices: 37476690--37476992 Score: 389
Period size: 40 Copynumber: 7.6 Consensus size: 40
37476680 TCCTCGTTCA
* * * ** *
37476690 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
37476729 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37476769 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37476809 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37476849 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
37476889 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
37476929 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
37476969 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37476993 CAGCATTCAA
Statistics
Matches: 239, Mismatches: 20, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 194 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:37483424 original size:40 final size:39
Alignment explanation
Indices: 37483326--37483588 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
37483316 TCCTCGTTCA
* * * *
37483326 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
37483365 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
37483404 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
37483444 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
37483484 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
37483524 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
37483565 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37483589 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:37483548 original size:120 final size:119
Alignment explanation
Indices: 37483326--37483588 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
37483316 TCCTCGTTCA
* * *
37483326 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
37483391 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
37483444 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
37483509 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
37483565 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
37483589 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:37483597 original size:41 final size:41
Alignment explanation
Indices: 37483520--37483597 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37483510 TTTGTATCTC
* * *
37483520 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37483561 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37483598 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37496882 original size:48 final size:47
Alignment explanation
Indices: 37496821--37497043 Score: 166
Period size: 48 Copynumber: 4.7 Consensus size: 47
37496811 GGGTTGATGA
* * * *
37496821 GATCCCGTATAAGACCATATTTGGGATATGGCATCAGCATCGATATGT
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCAT-AGCATCGATATGT
* * **
37496869 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCACCTTTATGT
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCA-TAGCATCGATATGT
* * * * *
37496917 GATCCCATGTAAGACCGTGTCTGGGACATGGCATTGCATCGATTTGA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATAGCATCGATATGT
* ** ** * * *
37496964 GAACGTTGTGTAAGACCATAG-CTGGGTTATTGGCTTCG-AT--ATGTGT
1 GATC-CCGTGTAAGACCAT-GTCTGGGACA-TGGCATAGCATCGATATGT
* *
37497010 GATCCCATGTAAGAACATGTCTGGGACATGGCAT
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCAT
37497044 TGGAATCAAT
Statistics
Matches: 135, Mismatches: 35, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
44 6 0.04
45 16 0.12
46 7 0.05
47 11 0.08
48 87 0.64
49 8 0.06
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (47 bp):
GATCCCGTGTAAGACCATGTCTGGGACATGGCATAGCATCGATATGT
Found at i:37500789 original size:40 final size:40
Alignment explanation
Indices: 37500604--37500775 Score: 310
Period size: 40 Copynumber: 4.3 Consensus size: 40
37500594 AGAGGATATA
37500604 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
37500644 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
37500684 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
* *
37500724 CGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCC
37500764 CGAAGGCATTTG
1 CGAAGGCATTTG
37500776 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
40 127 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
Found at i:37500793 original size:80 final size:80
Alignment explanation
Indices: 37500604--37500808 Score: 272
Period size: 80 Copynumber: 2.6 Consensus size: 80
37500594 AGAGGATATA
** *
37500604 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 CGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
37500669 ATCCGGGTTAAGTCC
66 ATCCGGGCTAAGTCC
** *
37500684 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-
*
37500749 AA-CCGGGCTATGTCC
65 AATCCGGGCTAAGTCC
* * *
37500764 CGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
37500809 TACGTGATTT
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
79 15 0.13
80 98 0.85
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
ATCCGGGCTAAGTCC
Found at i:37506067 original size:54 final size:53
Alignment explanation
Indices: 37505901--37506072 Score: 202
Period size: 54 Copynumber: 3.2 Consensus size: 53
37505891 CCCAAAATAG
**
37505901 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAAT-CCCCTATATA
** *
37505955 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGATAGTAATGCCC-ATATA
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATCCCCTATATA
* * * * * *
37506007 GGGTAAAAAGACCGTAATGCCCTTGTAGGATAAAATGACCGTAATATCCCTGTATA
1 --GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAAT-CCCCTATATA
37506063 GTAAAATGAC
1 GTAAAATGAC
37506073 GATTATGCCC
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
52 3 0.03
53 3 0.03
54 87 0.87
55 3 0.03
56 4 0.04
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (53 bp):
GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATCCCCTATATA
Found at i:37506067 original size:81 final size:81
Alignment explanation
Indices: 37505897--37506072 Score: 237
Period size: 81 Copynumber: 2.2 Consensus size: 81
37505887 AAACCCCAAA
* * * *
37505897 ATAG-GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAA
1 ATAGAGTAAAATGACAGTAATGCCCATATAGGGTAAAAAGACCGTAATGCCCCTATAGGATAAAA
*
37505961 TGACCGTAATGCCCCT
66 TGACCGTAATACCCCT
* * * *
37505977 ATAGGGTAAAATGATAGTAATGCCCATATAGGGTAAAAAGACCGTAATGCCCTTGTAGGATAAAA
1 ATAGAGTAAAATGACAGTAATGCCCATATAGGGTAAAAAGACCGTAATGCCCCTATAGGATAAAA
*
37506042 TGACCGTAATATCCCT
66 TGACCGTAATACCCCT
* *
37506058 GTATAGTAAAATGAC
1 ATAGAGTAAAATGAC
37506073 GATTATGCCC
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 4 0.05
81 78 0.95
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (81 bp):
ATAGAGTAAAATGACAGTAATGCCCATATAGGGTAAAAAGACCGTAATGCCCCTATAGGATAAAA
TGACCGTAATACCCCT
Found at i:37506072 original size:27 final size:27
Alignment explanation
Indices: 37505900--37506051 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
37505890 CCCCAAAATA
37505900 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
37505927 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
37505954 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
** *
37505981 GGTAAAATGATAGTAATGCCCATATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * *
37506008 GGTAAAAAGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
37506035 GATAAAATGACCGTAAT
1 GGTAAAATGACCGTAAT
37506052 ATCCCTGTAT
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTATAG
Found at i:37507972 original size:19 final size:19
Alignment explanation
Indices: 37507941--37507992 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
37507931 ATAAAGTATT
*
37507941 TAAAAAAT-TTTAAGTAAA
1 TAAAAAATAATTAAGTAAA
*
37507959 TAAAAAATAATTAATTAAA
1 TAAAAAATAATTAAGTAAA
37507978 -ATAAAAATAATTAAG
1 TA-AAAAATAATTAAG
37507993 AATTATCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 9 0.31
19 20 0.69
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
TAAAAAATAATTAAGTAAA
Found at i:37519245 original size:46 final size:45
Alignment explanation
Indices: 37519192--37519360 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
37519182 TGGGCATCCA
37519192 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*** *
37519238 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GAA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
* *
37519285 AGA-TCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCC
1 A-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*
37519330 AAGCTCTTTGAGTTGAGTCCGAGTTCACTTA
1 AA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
37519361 CGGCCGGGTT
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 4 0.04
46 54 0.53
47 30 0.30
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCG
Found at i:37522158 original size:15 final size:15
Alignment explanation
Indices: 37522138--37522193 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
37522128 GTATCTTGGG
37522138 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
37522153 TTTCTTTATTCTAGA
1 TTTCTTTATTCTGGA
*
37522168 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
37522183 TTTCTTTATTC
1 TTTCTTTATTC
37522194 GGTTTCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.14, C:0.16, G:0.09, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:37524639 original size:46 final size:45
Alignment explanation
Indices: 37524586--37524761 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
37524576 TATTTGGGCA
37524586 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
37524632 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
37524679 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
37524725 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37524762 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:37524741 original size:93 final size:93
Alignment explanation
Indices: 37524582--37524753 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
37524572 AGGATATTTG
* *
37524582 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
37524647 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
37524675 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
37524740 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
37524754 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:37531618 original size:25 final size:25
Alignment explanation
Indices: 37531559--37531621 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
37531549 TAGCTCTCAT
* *
37531559 GAGCTTTCTATTATATGGTTATTGC
1 GAGCTTCCTGTTATATGGTTATTGC
37531584 GAGCTTCCTGTTATATGGTTATTGC
1 GAGCTTCCTGTTATATGGTTATTGC
*
37531609 GGGCTTCCTGTTA
1 GAGCTTCCTGTTA
37531622 ATAGCTCTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGTTATTGC
Found at i:37534452 original size:34 final size:34
Alignment explanation
Indices: 37534414--37534479 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
37534404 AGGTATTTAA
*
37534414 GGGATTTAGTTCATAACTAAAAATGAAAACATAG
1 GGGATTTAGTTCATAACTAAAAAGGAAAACATAG
37534448 GGGATTTAGTTCATAACTAAAAAGGAAAACAT
1 GGGATTTAGTTCATAACTAAAAAGGAAAACAT
37534480 CTCAGAAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.47, C:0.09, G:0.18, T:0.26
Consensus pattern (34 bp):
GGGATTTAGTTCATAACTAAAAAGGAAAACATAG
Found at i:37542885 original size:40 final size:40
Alignment explanation
Indices: 37542808--37543025 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
37542798 AAACCAAGTA
* *
37542808 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
37542847 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37542887 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37542927 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
37542967 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37543007 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37543026 TTATCATCCG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 15 0.09
40 153 0.91
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37557909 original size:24 final size:24
Alignment explanation
Indices: 37557882--37557927 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
37557872 AGCTCCCGTT
* *
37557882 ATATGGCTCTTTGTGAGCTTCTCG
1 ATATGGCTCTTTATGAACTTCTCG
*
37557906 ATATGGTTCTTTATGAACTTCT
1 ATATGGCTCTTTATGAACTTCT
37557928 TGATTACGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (24 bp):
ATATGGCTCTTTATGAACTTCTCG
Found at i:37562314 original size:23 final size:22
Alignment explanation
Indices: 37562277--37562319 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
37562267 AACATTTTAT
* *
37562277 ACCAAAATTTCAACCAATTCACA
1 ACCAAAATATAAACC-ATTCACA
37562300 ACCAAAATATAAACCATTCA
1 ACCAAAATATAAACCATTCA
37562320 TGCCATACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (22 bp):
ACCAAAATATAAACCATTCACA
Found at i:37563248 original size:42 final size:42
Alignment explanation
Indices: 37563136--37563253 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
37563126 AGCTCGAACA
* *
37563136 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCC
1 ATGCC-ATGTCCCAGACATGGTCTTACACGTAATCAAATATCC
* *
37563179 ATGCCACTGTCCCAGACAGGGTCTTACACG-ATATCAAATA-CG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGTA-ATCAAATATCC
* * *
37563221 ATGTCGATGTCCCAGACATGGTTTTACATGTAA
1 ATG-CCATGTCCCAGACATGGTCTTACACGTAA
37563254 ATCTCAAATC
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
42 27 0.43
43 36 0.57
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGTAATCAAATATCC
Found at i:37565079 original size:19 final size:19
Alignment explanation
Indices: 37565017--37565071 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
37565007 AATTAATTTG
*
37565017 ATAACAG-AATTCATCTAT
1 ATAACAGTAATTCATCCAT
* *
37565035 TTAAACAGTACTTCATCCAT
1 AT-AACAGTAATTCATCCAT
37565055 ATAACAGTAATTCATCC
1 ATAACAGTAATTCATCC
37565072 GTGTAACATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 1 0.03
19 19 0.63
20 10 0.33
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.33
Consensus pattern (19 bp):
ATAACAGTAATTCATCCAT
Found at i:37565299 original size:24 final size:24
Alignment explanation
Indices: 37565262--37565314 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
37565252 AGCTCTATTG
* *
37565262 AGCT-AAAACGGTAAGCTTTTACA
1 AGCTGAAAACAGTAAGCTCTTACA
*
37565285 AGCTGAAAACAGTAAGCTCTTACG
1 AGCTGAAAACAGTAAGCTCTTACA
37565309 AGCTGA
1 AGCTGA
37565315 TATATCGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (24 bp):
AGCTGAAAACAGTAAGCTCTTACA
Found at i:37567850 original size:68 final size:67
Alignment explanation
Indices: 37567736--37567926 Score: 174
Period size: 65 Copynumber: 2.9 Consensus size: 67
37567726 CGCAATGGCA
* * * * * *
37567736 GACTTCATACGTTGCCATAACCTAACTACGGACTTACACTGA-ATGATGCCATGTTTA-CAGTCA
1 GACTTCATATGTTGTCATAACCAAACTATGGTCTTACAC-AATATGATG-CATGTTTATCA-TCA
37567799 TAGAG
63 TAGAG
* * * * *
37567804 GACTTCATATGTTGTCATAACCCATCTATGGTCTTACACAATATGAT--ATGTTTATTATCCTGG
1 GACTTCATATGTTGTCATAACCAAACTATGGTCTTACACAATATGATGCATGTTTATCATCATAG
*
37567867 TG
66 AG
* * * *
37567869 GACTTCAAATGTTGTCATAGCCAAACTTTGGTTTTACACAATATGATGTCATGTTTAT
1 GACTTCATATGTTGTCATAACCAAACTATGGTCTTACACAATATGATG-CATGTTTAT
37567927 TCTCCTGGCA
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
65 53 0.52
66 1 0.01
67 1 0.01
68 46 0.46
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (67 bp):
GACTTCATATGTTGTCATAACCAAACTATGGTCTTACACAATATGATGCATGTTTATCATCATAG
AG
Found at i:37567881 original size:65 final size:67
Alignment explanation
Indices: 37567803--37567934 Score: 178
Period size: 65 Copynumber: 2.0 Consensus size: 67
37567793 CAGTCATAGA
* * *
37567803 GGACTTCATATGTTGTCATAACCCATCTATGGTCTTACACAATATGA-T-ATGTTTATTATCCTG
1 GGACTTCAAATGTTGTCATAACCAAACTATGGTCTTACACAATATGAGTCATGTTTATTATCCTG
37567866 GT
66 GT
* * * *
37567868 GGACTTCAAATGTTGTCATAGCCAAACTTTGGTTTTACACAATATGATGTCATGTTTATTCTCCT
1 GGACTTCAAATGTTGTCATAACCAAACTATGGTCTTACACAATATGA-GTCATGTTTATTATCCT
37567933 GG
65 GG
37567935 CAAACTTCAT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
65 41 0.72
67 1 0.02
68 15 0.26
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (67 bp):
GGACTTCAAATGTTGTCATAACCAAACTATGGTCTTACACAATATGAGTCATGTTTATTATCCTG
GT
Found at i:37567949 original size:68 final size:65
Alignment explanation
Indices: 37567805--37567950 Score: 175
Period size: 65 Copynumber: 2.2 Consensus size: 65
37567795 GTCATAGAGG
* * ***
37567805 ACTTCATATGTTGTCATAACCCATCTATGGTCTTACACAATATGATATGTTTATTATCCTGGTGG
1 ACTTCATATGTTGTCATAACCAAACTATGGTCTTACACAATATGATATGTTTATTATCCTGGCAA
* * * * *
37567870 ACTTCAAATGTTGTCATAGCCAAACTTTGGTTTTACACAATATGATGTCATGTTTATTCTCCTGG
1 ACTTCATATGTTGTCATAACCAAACTATGGTCTTACACAATATGA--T-ATGTTTATTATCCTGG
37567935 CAA
63 CAA
37567938 ACTTCATATGTTG
1 ACTTCATATGTTG
37567951 CCGAAGCTCA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
65 39 0.58
67 1 0.01
68 27 0.40
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (65 bp):
ACTTCATATGTTGTCATAACCAAACTATGGTCTTACACAATATGATATGTTTATTATCCTGGCAA
Found at i:37567974 original size:68 final size:67
Alignment explanation
Indices: 37567805--37567992 Score: 168
Period size: 68 Copynumber: 2.8 Consensus size: 67
37567795 GTCATAGAGG
* * * * * *
37567805 ACTTCATATGTTGTCATAACCCATCTATGGTCTTACACAATATGA-T-ATGTTTATTATCCTGGT
1 ACTTCAAATGTTGCCATAGCCAAACTATGGTCTTACACAATATGATTCATGTTTATTATCCTGGC
**
37567868 GG
66 AA
* * * *
37567870 ACTTCAAATGTTGTCATAGCCAAACTTTGGTTTTACACAATATGATGTCATGTTTATTCTCCTGG
1 ACTTCAAATGTTGCCATAGCCAAACTATGGTCTTACACAATATGAT-TCATGTTTATTATCCTGG
37567935 CAA
65 CAA
* ** *
37567938 ACTTCATATGTTGCCGA-AGCTC-AGGTATGGTCTTACACAACATGATTTCATGTTT
1 ACTTCAAATGTTGCC-ATAGC-CAAACTATGGTCTTACACAATATGA-TTCATGTTT
37567993 TCCCACAGAC
Statistics
Matches: 100, Mismatches: 17, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
65 39 0.39
67 1 0.01
68 57 0.57
69 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (67 bp):
ACTTCAAATGTTGCCATAGCCAAACTATGGTCTTACACAATATGATTCATGTTTATTATCCTGGC
AA
Found at i:37569666 original size:6 final size:6
Alignment explanation
Indices: 37569655--37569688 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
37569645 CAAATGGATA
*
37569655 ATTTCC ATTTCC ATTTTC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
37569689 TTGGAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:37569678 original size:18 final size:18
Alignment explanation
Indices: 37569655--37569689 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
37569645 CAAATGGATA
37569655 ATTTCCATTTCCATTTTC
1 ATTTCCATTTCCATTTTC
37569673 ATTTCCATTTCCATTTT
1 ATTTCCATTTCCATTTT
37569690 TGGAAACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTCCATTTCCATTTTC
Found at i:37574881 original size:42 final size:42
Alignment explanation
Indices: 37574822--37574976 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
37574812 CCGAGACTAT
37574822 GTGTAAGACCATATCTGGGATATGGCATC-ATTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATTTC
* *
37574864 GTGTAAGACCATATCTGGGATATGGAAACGATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTC
* * * * * **
37574906 GTGTAAGACTATAGCTGGGCTATTGGCATCGAAACGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTC
* *
37574949 ATATAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
37574977 TGGTGTGGTA
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 63 0.66
43 32 0.34
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTC
Found at i:37581507 original size:38 final size:38
Alignment explanation
Indices: 37581465--37581551 Score: 156
Period size: 38 Copynumber: 2.3 Consensus size: 38
37581455 ATAGACATGC
*
37581465 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATAAGTACATAAGTTGATGTGT
*
37581503 ATGTTCGGCCACATGACTAAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATAAGTACATAAGTTGATGTGT
37581541 ATGTTCGGCCA
1 ATGTTCGGCCA
37581552 TAGGTAAGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATAAGTACATAAGTTGATGTGT
Found at i:37583146 original size:46 final size:46
Alignment explanation
Indices: 37583096--37583271 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
37583086 TGGCTGAGCA
*
37583096 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
37583142 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
37583187 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
37583235 CCCGAGCTCGTTAAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37583272 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 61 0.58
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:37583252 original size:93 final size:93
Alignment explanation
Indices: 37583093--37583264 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
37583083 GGATGGCTGA
* * * * *
37583093 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAGT
37583158 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
37583186 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTAAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAGT
37583251 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
37583265 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37585731 original size:56 final size:56
Alignment explanation
Indices: 37585663--37585771 Score: 191
Period size: 56 Copynumber: 1.9 Consensus size: 56
37585653 AAATCCCAGA
* *
37585663 CTACTTCGGCAGCCAGTGTAGGGAACTCGAGATTTGTTAAACCTAAGTGCCAGAGC
1 CTACTCCGGCAGCCAGTGTACGGAACTCGAGATTTGTTAAACCTAAGTGCCAGAGC
*
37585719 CTACTCCGGCAGCCAGTGTACGGAACTCGAGATTTGTTAAACCTGAGTGCCAG
1 CTACTCCGGCAGCCAGTGTACGGAACTCGAGATTTGTTAAACCTAAGTGCCAG
37585772 CGGTGTGGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (56 bp):
CTACTCCGGCAGCCAGTGTACGGAACTCGAGATTTGTTAAACCTAAGTGCCAGAGC
Found at i:37590740 original size:46 final size:46
Alignment explanation
Indices: 37590690--37590865 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
37590680 TGGCTGAGCA
*
37590690 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
37590736 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
37590781 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
37590829 CCCGAGCTCGTTAAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37590866 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 61 0.58
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:37590846 original size:93 final size:93
Alignment explanation
Indices: 37590687--37590858 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
37590677 GGATGGCTGA
* * * * *
37590687 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAGT
37590752 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
37590780 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTAAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAGT
37590845 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
37590859 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37598291 original size:46 final size:46
Alignment explanation
Indices: 37598241--37598416 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
37598231 TGGCTGAGCA
37598241 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
37598287 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
37598332 CATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37598380 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37598417 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37598397 original size:93 final size:93
Alignment explanation
Indices: 37598238--37598409 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
37598228 GGATGGCTGA
* *
37598238 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37598303 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
37598331 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37598396 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
37598410 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37600161 original size:40 final size:40
Alignment explanation
Indices: 37600067--37600288 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
37600057 TATTCGAATG
* * *
37600067 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * * *
37600108 ATAACCAGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* * *
37600148 ATATCTGGGCTAAGACCCCAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
37600188 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * * *
37600228 ATATCCGGGCTAAGTCCCGAAGGCATCTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
37600268 ATATCCGGGCTAAGACCCGAA
1 ATATCCGGGCTAAGACCCGAA
37600289 AGCCTTGTGC
Statistics
Matches: 152, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.81
41 28 0.18
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:37600238 original size:80 final size:80
Alignment explanation
Indices: 37600067--37600318 Score: 276
Period size: 80 Copynumber: 3.2 Consensus size: 80
37600057 TATTCGAATG
* * * * *
37600067 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
37600132 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * *
37600148 ATATCTGGGCTAAGACCCCAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
37600213 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
37600228 ATATCCGGGCTAAGTCCCGAAGGCATCTATGCTAGTGACCATATCCGGGCTAAGACCCGAAAGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
37600293 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
37600307 ATATCC-GGCTAA
1 ATATCCGGGCTAA
37600319 ATCTCAAAGA
Statistics
Matches: 143, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
78 6 0.04
79 14 0.10
80 93 0.65
81 30 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:37600281 original size:120 final size:121
Alignment explanation
Indices: 37600067--37600285 Score: 293
Period size: 120 Copynumber: 1.8 Consensus size: 121
37600057 TATTCGAATG
* * *
37600067 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
* * *
37600132 ATTCGTGCGAGTTGCTATATCTGGGCTAAGACCCCAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCATATCCGGGCTAAGACCCCAAGGCATTTGTGCTAGCGATT
* * *
37600188 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGAT-CCGAAGG
*
37600251 CA-TCTATGCTAG-TGACCATATCCGGGCTAAGACCC
65 CATTC-ATGCGAGTTG-CCATATCCGGGCTAAGACCC
37600286 GAAAGCCTTG
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
119 5 0.06
120 48 0.56
121 32 0.38
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCATATCCGGGCTAAGACCCCAAGGCATTTGTGCTAGCGATT
Found at i:37604419 original size:28 final size:28
Alignment explanation
Indices: 37604357--37604509 Score: 227
Period size: 28 Copynumber: 5.5 Consensus size: 28
37604347 TATTAAGTCT
*
37604357 GCACACTCAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* *
37604384 GCACACTTAGTGCTACATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAACTC
37604412 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
37604440 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* * * *
37604468 GCACACTTAGTGCTGTACAATTTAAACCC
1 GCACACTTAGTGCTATATAA-TCAAACTC
37604497 GCACACTTAGTGC
1 GCACACTTAGTGC
37604510 CAATCTCATG
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.17
28 76 0.66
29 19 0.17
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:37612580 original size:28 final size:28
Alignment explanation
Indices: 37612515--37612724 Score: 350
Period size: 28 Copynumber: 7.5 Consensus size: 28
37612505 ATATTAAGTC
* *
37612515 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
37612542 CGCACACTTAGTGCTATATAATCAATCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
37612570 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
37612598 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
37612626 CGCACACTTAGTGCTACATAATCGAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37612654 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
37612682 CACACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37612710 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37612725 GTACAATTTA
Statistics
Matches: 173, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
27 22 0.13
28 151 0.87
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:37622314 original size:135 final size:135
Alignment explanation
Indices: 37622072--37622339 Score: 491
Period size: 135 Copynumber: 2.0 Consensus size: 135
37622062 GATGTTATTC
37622072 TTGGTTTGGATTGGCTGACCGCGCATGATGCAGTTGTGAACTGCAAAAGCAAGACTATTGATTTG
1 TTGGTTTGGATTGGCTGACCGCGCATGATGCAGTTGTGAACTGCAAAAGCAAGACTATTGATTTG
37622137 AGGTGCGCAAATAACGAGATAATCAGAGTTGAGTCTACGGACTTAAAGGGGTTGCCAGCTGTAAT
66 AGGTGCGCAAATAACGAGATAATCAGAGTTGAGTCTACGGACTTAAAGGGGTTGCCAGCTGTAAT
37622202 ATCCT
131 ATCCT
* * *
37622207 TTGGTTTGGATTGGTTGACCGCGCATGATGCGGTTGTGAATTGCAAAAGCAAGACTATTGATTTG
1 TTGGTTTGGATTGGCTGACCGCGCATGATGCAGTTGTGAACTGCAAAAGCAAGACTATTGATTTG
* *
37622272 AGGTGCGCAAATAACGAGATAATCTGAGTTGAGTCTACGGACTTAAGGGGGTTGCCAGCTGTAAT
66 AGGTGCGCAAATAACGAGATAATCAGAGTTGAGTCTACGGACTTAAAGGGGTTGCCAGCTGTAAT
37622337 ATC
131 ATC
37622340 AGCAATGTTG
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
135 128 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (135 bp):
TTGGTTTGGATTGGCTGACCGCGCATGATGCAGTTGTGAACTGCAAAAGCAAGACTATTGATTTG
AGGTGCGCAAATAACGAGATAATCAGAGTTGAGTCTACGGACTTAAAGGGGTTGCCAGCTGTAAT
ATCCT
Found at i:37627053 original size:79 final size:81
Alignment explanation
Indices: 37626917--37627101 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
37626907 TTGAATGATG
* *
37626917 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
37626981 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
37626996 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37627058 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
37627076 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37627102 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:37627115 original size:40 final size:40
Alignment explanation
Indices: 37626918--37627101 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
37626908 TGAATGATGT
* * * *
37626918 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
37626958 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
37626998 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
37627036 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37627077 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37627102 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37627123 original size:79 final size:79
Alignment explanation
Indices: 37626970--37627134 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
37626960 GGACTAAGAT
* * **
37626970 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
37627035 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37627049 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37627112 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37627128 CCGAAGG
1 CCGAAGG
37627135 TACGTGATAT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37627561 original size:200 final size:200
Alignment explanation
Indices: 37627214--37627614 Score: 757
Period size: 200 Copynumber: 2.0 Consensus size: 200
37627204 GAGGTATGTT
37627214 TCGTATGTGCTTGAATTTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAACGAGCTA
1 TCGTATGTGCTTGAATTTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAACGAGCTA
37627279 CCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGTACATAAGGGTTGGTAATGTGAAGCAAGTATG
66 CCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGTACATAAGGGTTGGTAATGTGAAGCAAGTATG
* *
37627344 ATATTGAAAAATTGTGCATATGAAATTATCCGTTTAGCTACATGAATGCTATACTTTTGTTGTGC
131 ATATCGAAAAATTGTGCATATGAAATTATCCGTTTAGCTACATGAATGCTATACTTTTGCTGTGC
37627409 TGGAA
196 TGGAA
37627414 TCGTATGTGCTTGAATTTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAACGAGCTA
1 TCGTATGTGCTTGAATTTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAACGAGCTA
37627479 CCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGTACATAAGGGTTGGTAATGTGAAGCAAGTATG
66 CCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGTACATAAGGGTTGGTAATGTGAAGCAAGTATG
* * *
37627544 ATATCGAAAATTTGTGCATATGAAATTATCTGTTTAGCTATATGAATGCTATACTTTTGCTGTGC
131 ATATCGAAAAATTGTGCATATGAAATTATCCGTTTAGCTACATGAATGCTATACTTTTGCTGTGC
37627609 TGGAA
196 TGGAA
37627614 T
1 T
37627615 TCCTTGCTCA
Statistics
Matches: 196, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
200 196 1.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (200 bp):
TCGTATGTGCTTGAATTTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAACGAGCTA
CCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGTACATAAGGGTTGGTAATGTGAAGCAAGTATG
ATATCGAAAAATTGTGCATATGAAATTATCCGTTTAGCTACATGAATGCTATACTTTTGCTGTGC
TGGAA
Found at i:37634071 original size:16 final size:16
Alignment explanation
Indices: 37634045--37634096 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
37634035 TATGAATCGG
*
37634045 CGAAA-GCTGAAATGC
1 CGAAATGCTGAAAAGC
37634060 CGAAATGCTGAAAAGC
1 CGAAATGCTGAAAAGC
* * *
37634076 CAAAATACCGAAAAGC
1 CGAAATGCTGAAAAGC
37634092 CGAAA
1 CGAAA
37634097 GTTGGCTATG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
15 5 0.16
16 26 0.84
ACGTcount: A:0.48, C:0.21, G:0.21, T:0.10
Consensus pattern (16 bp):
CGAAATGCTGAAAAGC
Found at i:37641825 original size:16 final size:16
Alignment explanation
Indices: 37641804--37641850 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
37641794 ATCGGCGAAA
*
37641804 GCTGAAATGCCAAAAT
1 GCTGAAAAGCCAAAAT
*
37641820 GCTGAAAAGCCGAAAT
1 GCTGAAAAGCCAAAAT
37641836 G-TCGAAAAGCCAAAA
1 GCT-GAAAAGCCAAAA
37641851 GTTGGCTACG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 1 0.04
16 26 0.96
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (16 bp):
GCTGAAAAGCCAAAAT
Found at i:37642167 original size:28 final size:29
Alignment explanation
Indices: 37642072--37642170 Score: 139
Period size: 29 Copynumber: 3.4 Consensus size: 29
37642062 AATGTGACTA
* * *
37642072 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAGTATGATTTG
37642101 GGCCTAATGGGCCATATACAG-ATGATTTG
1 GGCCTAATGGGCCATATA-AGTATGATTTG
37642130 GGCCTAATGGGCCATATAAGTATGA-TTG
1 GGCCTAATGGGCCATATAAGTATGATTTG
*
37642158 GGCTTAATGGGCC
1 GGCCTAATGGGCC
37642171 GGATACAGGT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
28 17 0.27
29 46 0.72
30 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAGTATGATTTG
Done.