Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 148 of 276
Found at i:48202187 original size:27 final size:27
Alignment explanation
Indices: 48202144--48202302 Score: 155
Period size: 27 Copynumber: 5.9 Consensus size: 27
48202134 GCGACGCTGC
* *
48202144 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
48202171 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
48202197 CAGATATATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* ** * *
48202224 CAAATAATTGTGGCCTAGCCGCCA-AGA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
48202251 CAGATATATGTGGCACAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
48202278 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
48202303 GACGCTTCCT
Statistics
Matches: 108, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
26 11 0.10
27 92 0.85
28 5 0.05
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:48202234 original size:54 final size:55
Alignment explanation
Indices: 48202156--48202302 Score: 192
Period size: 54 Copynumber: 2.7 Consensus size: 55
48202146 GATATTGTGA
* * *
48202156 CAGAGTCACCAGATACAGAT-ATTGTGGTAGAGCCACCAGA-ACAGATATATATGG
1 CAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAGACAGATATATATGG
* * * *
48202210 CAGAGCCACCAGATCAAATAATTGTGGCCTAGCCGCCA-AGACAGATATATGTGG
1 CAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAGACAGATATATATGG
*
48202264 CACAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
48202303 GACGCTTCCT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (55 bp):
CAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAGACAGATATATATGG
Found at i:48210895 original size:40 final size:40
Alignment explanation
Indices: 48210790--48210901 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
48210780 TGGGATTTAG
* *
48210790 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGACATAGC
* * *
48210830 CCGAATATAATC-ACTAGCATAAATGCCTTCGGGACATAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGACATAGC
* *
48210870 CCGGATATAGCAACTCGCACGAATGCCTTCGG
1 CCGGATATAACAACTCGCACAAATGCCTTCGG
48210902 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.02
40 58 0.97
41 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGACATAGC
Found at i:48218809 original size:40 final size:40
Alignment explanation
Indices: 48218732--48218863 Score: 144
Period size: 40 Copynumber: 3.3 Consensus size: 40
48218722 ACCCAAGTAT
*
48218732 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTAGCACAAATGC
* *
48218771 CTTCGGGTCTTAGCCCGAATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTAGCACAAATGC
* * * * *
48218811 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGC
*
48218851 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
48218864 TTCGGTTATC
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.16
40 62 0.82
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGC
Found at i:48226283 original size:19 final size:20
Alignment explanation
Indices: 48226246--48226284 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
48226236 TGTACACATG
*
48226246 ATGTGCACCCAGCACCATAC
1 ATGTGCACCCAGCAACATAC
*
48226266 ATGTG-ACCTAGCAACATAC
1 ATGTGCACCCAGCAACATAC
48226285 TACCTATATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.18
Consensus pattern (20 bp):
ATGTGCACCCAGCAACATAC
Found at i:48229307 original size:20 final size:21
Alignment explanation
Indices: 48229264--48229309 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
48229254 ACTGTTTTGT
48229264 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
48229284 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
48229303 TATGGGC
1 TATGGGC
48229310 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:48242612 original size:22 final size:22
Alignment explanation
Indices: 48242586--48242629 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
48242576 AACTATTAAC
*
48242586 ATAATGAATTTTAAATAATTTT
1 ATAATAAATTTTAAATAATTTT
* *
48242608 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAAATAATTTT
48242630 GATCATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
ATAATAAATTTTAAATAATTTT
Found at i:48251132 original size:19 final size:21
Alignment explanation
Indices: 48251098--48251139 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
48251088 GGAAGATGTC
48251098 ATGGTAGAATATTAATTTTAT
1 ATGGTAGAATATTAATTTTAT
48251119 ATGGTAG-A-ATTAATTTTAT
1 ATGGTAGAATATTAATTTTAT
48251138 AT
1 AT
48251140 TTTCATGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 13 0.62
20 1 0.05
21 7 0.33
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (21 bp):
ATGGTAGAATATTAATTTTAT
Found at i:48263778 original size:18 final size:18
Alignment explanation
Indices: 48263755--48263815 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
48263745 TCTCATTTTT
*
48263755 AGCAACTTCTTCTTCTTC
1 AGCAACTTCTTCTTCTGC
*
48263773 AGCAACCACTTCCTCTTCTGC
1 AGC-A--ACTTCTTCTTCTGC
* *
48263794 AACAACTTCTTCTTCTGT
1 AGCAACTTCTTCTTCTGC
48263812 AGCA
1 AGCA
48263816 GTAACTTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 18 0.53
19 1 0.03
20 1 0.03
21 14 0.41
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.36
Consensus pattern (18 bp):
AGCAACTTCTTCTTCTGC
Found at i:48263783 original size:21 final size:21
Alignment explanation
Indices: 48263757--48263809 Score: 67
Period size: 18 Copynumber: 2.7 Consensus size: 21
48263747 TCATTTTTAG
48263757 CAACTTCTTCTTCTTCAGCAA
1 CAACTTCTTCTTCTTCAGCAA
* *
48263778 CCACTTC--C-TCTTCTGCAA
1 CAACTTCTTCTTCTTCAGCAA
48263796 CAACTTCTTCTTCT
1 CAACTTCTTCTTCT
48263810 GTAGCAGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 15 0.58
19 1 0.04
20 1 0.04
21 9 0.35
ACGTcount: A:0.19, C:0.38, G:0.04, T:0.40
Consensus pattern (21 bp):
CAACTTCTTCTTCTTCAGCAA
Found at i:48273303 original size:40 final size:40
Alignment explanation
Indices: 48273243--48273405 Score: 175
Period size: 40 Copynumber: 4.1 Consensus size: 40
48273233 TAAATTATTA
*
48273243 CACTTACGTGCCCCTATTTGTACTTCAGTACCCTTGATTG
1 CACTTACGTGCCCCTGTTTGTACTTCAGTACCCTTGATTG
* ** * *
48273283 CACTTACGTGTCTTTGTTTGTACTTCGGTACCCCTGATTG
1 CACTTACGTGCCCCTGTTTGTACTTCAGTACCCTTGATTG
* * * * *
48273323 CACTTATGTGCCCCTATTTGTACTTCGGTATCCC-TGGTTT
1 CACTTACGTGCCCCTGTTTGTACTTCAGTA-CCCTTGATTG
* * * *
48273363 CACTTACGTGCCCCTGTTTGCACTTCAATGCCTTTGATTG
1 CACTTACGTGCCCCTGTTTGTACTTCAGTACCCTTGATTG
48273403 CAC
1 CAC
48273406 ATTTGTGCTT
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 2 0.02
40 94 0.95
41 3 0.03
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.39
Consensus pattern (40 bp):
CACTTACGTGCCCCTGTTTGTACTTCAGTACCCTTGATTG
Found at i:48273336 original size:20 final size:20
Alignment explanation
Indices: 48273243--48273498 Score: 80
Period size: 20 Copynumber: 12.8 Consensus size: 20
48273233 TAAATTATTA
48273243 CACTTACGTGCCCCT-ATTTG
1 CACTTACGTGCCCCTGA-TTG
* * *
48273263 TACTT-CAGTACCCTTGATTG
1 CACTTAC-GTGCCCCTGATTG
* ** *
48273283 CACTTACGTGTCTTTGTTTG
1 CACTTACGTGCCCCTGATTG
* *
48273303 TACTT-CGGTACCCCTGATTG
1 CACTTAC-GTGCCCCTGATTG
*
48273323 CACTTATGTGCCCCT-ATTTG
1 CACTTACGTGCCCCTGA-TTG
* ** * *
48273343 TACTT-CGGTATCCCTGGTTT
1 CACTTAC-GTGCCCCTGATTG
*
48273363 CACTTACGTGCCCCTGTTTG
1 CACTTACGTGCCCCTGATTG
* **
48273383 CACTT-CAATGCCTTTGATTG
1 CACTTAC-GTGCCCCTGATTG
* ** *
48273403 CACATT-TGTGCTTCTGATTA
1 CAC-TTACGTGCCCCTGATTG
* *
48273423 CACTTACGTGCCCCTGTTTT
1 CACTTACGTGCCCCTGATTG
**
48273443 CACTT-CGGTGCCTTTGATTG
1 CACTTAC-GTGCCCCTGATTG
* * *
48273463 CACATT-CATGCTCCTAATTG
1 CAC-TTACGTGCCCCTGATTG
**
48273483 CACTTTGGTGCCCCTG
1 CACTTACGTGCCCCTG
48273499 TTATGCATCT
Statistics
Matches: 166, Mismatches: 55, Indels: 30
0.66 0.22 0.12
Matches are distributed among these distances:
19 9 0.05
20 149 0.90
21 8 0.05
ACGTcount: A:0.14, C:0.29, G:0.18, T:0.39
Consensus pattern (20 bp):
CACTTACGTGCCCCTGATTG
Found at i:48273401 original size:80 final size:80
Alignment explanation
Indices: 48273243--48273413 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 80
48273233 TAAATTATTA
* * ** *
48273243 CACTTACGTGCCCCTATTTGTACTTCAGTACCCTTGATTGCACTTACGTGTCTTTGTTTGTACTT
1 CACTTATGTGCCCCTATTTGTACTTCAGTACCCTTGATTGCACTTACGTGCCCCTGTTTGCACTT
**
48273308 CGGTACCCCTGATTG
66 CAATACCCCTGATTG
* * *
48273323 CACTTATGTGCCCCTATTTGTACTTCGGTATCCC-TGGTTTCACTTACGTGCCCCTGTTTGCACT
1 CACTTATGTGCCCCTATTTGTACTTCAGTA-CCCTTGATTGCACTTACGTGCCCCTGTTTGCACT
* **
48273387 TCAATGCCTTTGATTG
65 TCAATACCCCTGATTG
48273403 CACATT-TGTGC
1 CAC-TTATGTGC
48273414 TTCTGATTAC
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 71 0.93
81 5 0.07
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.40
Consensus pattern (80 bp):
CACTTATGTGCCCCTATTTGTACTTCAGTACCCTTGATTGCACTTACGTGCCCCTGTTTGCACTT
CAATACCCCTGATTG
Found at i:48273427 original size:60 final size:60
Alignment explanation
Indices: 48273363--48273505 Score: 187
Period size: 60 Copynumber: 2.4 Consensus size: 60
48273353 TCCCTGGTTT
** * *
48273363 CACTTACGTGCCCCTGTTTGCACTTCAATGCCTTTGATTGCACATTTGTGCTTCTGATTA
1 CACTTACGTGCCCCTGTTTGCACTTCAATGCCTTTGATTGCACATTCATGCTCCTAATTA
* ** *
48273423 CACTTACGTGCCCCTGTTTTCACTTCGGTGCCTTTGATTGCACATTCATGCTCCTAATTG
1 CACTTACGTGCCCCTGTTTGCACTTCAATGCCTTTGATTGCACATTCATGCTCCTAATTA
**
48273483 CACTTTGGTGCCCCTGTTATGCA
1 CACTTACGTGCCCCTGTT-TGCA
48273506 TCTATGATTC
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
60 68 0.96
61 3 0.04
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.38
Consensus pattern (60 bp):
CACTTACGTGCCCCTGTTTGCACTTCAATGCCTTTGATTGCACATTCATGCTCCTAATTA
Found at i:48274793 original size:13 final size:13
Alignment explanation
Indices: 48274777--48274802 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48274767 TTAAATTATT
48274777 TAATTAGTTTAAA
1 TAATTAGTTTAAA
48274790 TAATTAGTTTAAA
1 TAATTAGTTTAAA
48274803 CAAACCCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:48279989 original size:6 final size:5
Alignment explanation
Indices: 48279963--48280045 Score: 82
Period size: 5 Copynumber: 16.0 Consensus size: 5
48279953 TGAATCCTCC
48279963 TATTT TATTT T-TTT TA-TT TATTCT TATTTT TATTT TATTT TA-TT TATTT
1 TATTT TATTT TATTT TATTT TATT-T TA-TTT TATTT TATTT TATTT TATTT
*
48280012 TATTCT TATTT TCTTT TGATTTT TATTT TCATTT
1 TATT-T TATTT TATTT T-A-TTT TATTT T-ATTT
48280046 CAAATTTCTT
Statistics
Matches: 67, Mismatches: 2, Indels: 17
0.78 0.02 0.20
Matches are distributed among these distances:
4 12 0.18
5 33 0.49
6 16 0.24
7 6 0.09
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:48279996 original size:25 final size:25
Alignment explanation
Indices: 48279965--48280033 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 25
48279955 AATCCTCCTA
48279965 TTTTATTTT-TTTTATTTATTCTTAT
1 TTTTATTTTATTTTATTTATT-TTAT
48279990 TTTTATTTTATTTTATTTATTTTAT
1 TTTTATTTTATTTTATTTATTTTAT
* *
48280015 TCTTATTTTCTTTTGATTT
1 TTTTATTTTATTTT-ATTT
48280034 TTATTTTCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
25 25 0.62
26 15 0.38
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (25 bp):
TTTTATTTTATTTTATTTATTTTAT
Found at i:48279999 original size:30 final size:31
Alignment explanation
Indices: 48279963--48280023 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 31
48279953 TGAATCCTCC
*
48279963 TATTTTATTTTTTTTA-TTTATTCTTATTTT
1 TATTTTATTTTATTTATTTTATTCTTATTTT
48279993 TATTTTATTTTATTTATTTTATTCTTATTTT
1 TATTTTATTTTATTTATTTTATTCTTATTTT
48280024 CTTTTGATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (31 bp):
TATTTTATTTTATTTATTTTATTCTTATTTT
Found at i:48281296 original size:30 final size:30
Alignment explanation
Indices: 48281262--48281324 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
48281252 TTAAGTTTTT
48281262 GATAGTGGGGTAATATATTGAAATTATCTC
1 GATAGTGGGGTAATATATTGAAATTATCTC
48281292 GATAGTGGGGTAATATATTGAAATTATCTC
1 GATAGTGGGGTAATATATTGAAATTATCTC
48281322 GAT
1 GAT
48281325 TCTAACCCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (30 bp):
GATAGTGGGGTAATATATTGAAATTATCTC
Found at i:48283780 original size:20 final size:19
Alignment explanation
Indices: 48283755--48283794 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
48283745 TTTACTTATG
48283755 TCATGAATAAATACACTAAT
1 TCATGAATAAATA-ACTAAT
* *
48283775 TCATGAGTTAATAACTAAT
1 TCATGAATAAATAACTAAT
48283794 T
1 T
48283795 AAATTTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (19 bp):
TCATGAATAAATAACTAAT
Found at i:48286321 original size:43 final size:42
Alignment explanation
Indices: 48286205--48286357 Score: 161
Period size: 43 Copynumber: 3.6 Consensus size: 42
48286195 CGTACAATTC
*
48286205 CAACATCCCAGACGTGGTCTTACATGTAAA-CAAATATCGATG
1 CAACGTCCCAGACGTGGTCTTACATGTAAATCAAATA-CGATG
* * *
48286247 CCACTGTCCCAGACAG-GATCTTACACG-AAATCAAATACGATG
1 CAAC-GTCCCAGAC-GTGGTCTTACATGTAAATCAAATACGATG
* *
48286289 TCAACGTCCCAAACGTGGCCTTACATGTAAATCATAAGT-CGATG
1 -CAACGTCCCAGACGTGGTCTTACATGTAAATCA-AA-TACGATG
48286333 CCAACGTCCCAGACGTGGTCTTACA
1 -CAACGTCCCAGACGTGGTCTTACA
48286358 CGATAACACA
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.30
43 32 0.35
44 30 0.33
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
CAACGTCCCAGACGTGGTCTTACATGTAAATCAAATACGATG
Found at i:48287384 original size:13 final size:13
Alignment explanation
Indices: 48287366--48287390 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48287356 ACAAACGATT
48287366 AAATTTTCACACG
1 AAATTTTCACACG
48287379 AAATTTTCACAC
1 AAATTTTCACAC
48287391 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:48291230 original size:45 final size:45
Alignment explanation
Indices: 48291161--48291260 Score: 173
Period size: 45 Copynumber: 2.2 Consensus size: 45
48291151 ACCACGTAAC
* *
48291161 CACATATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAA
1 CACATATATCGATGCCAACATCCCAGACATGGTCTTACACGAAAA
48291206 CACATATATCGATGCCAACATCCCAGACATGGTCTTACACGAAAA
1 CACATATATCGATGCCAACATCCCAGACATGGTCTTACACGAAAA
*
48291251 CACATGTATC
1 CACATATATC
48291261 AATACTGTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21
Consensus pattern (45 bp):
CACATATATCGATGCCAACATCCCAGACATGGTCTTACACGAAAA
Found at i:48294662 original size:23 final size:23
Alignment explanation
Indices: 48294629--48294672 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
48294619 CTAAATCGGG
48294629 CTGTTACAGATGCTGACATCCCA
1 CTGTTACAGATGCTGACATCCCA
*
48294652 CTGTTATAGATGCTGACATCC
1 CTGTTACAGATGCTGACATCC
48294673 TAGACGTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (23 bp):
CTGTTACAGATGCTGACATCCCA
Found at i:48295274 original size:15 final size:15
Alignment explanation
Indices: 48295251--48295281 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48295241 TCAAAAATTC
48295251 CAATACAAAACATAT
1 CAATACAAAACATAT
*
48295266 CAATGCAAAACATAT
1 CAATACAAAACATAT
48295281 C
1 C
48295282 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.23, G:0.03, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:48295813 original size:14 final size:15
Alignment explanation
Indices: 48295796--48295824 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
48295786 TCACGAAAAT
48295796 TTCACACAT-ATAAA
1 TTCACACATAATAAA
48295810 TTCACACATAATAAA
1 TTCACACATAATAAA
48295825 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:48298443 original size:23 final size:23
Alignment explanation
Indices: 48298400--48298445 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
48298390 CTTGCAATAG
**
48298400 ATAGTAGCCTGATCTTGAATCTA
1 ATAGTAGCCTGATCTCAAATCTA
48298423 ATAGTAGCCTGATCTCAAATCTA
1 ATAGTAGCCTGATCTCAAATCTA
48298446 TCTTCAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (23 bp):
ATAGTAGCCTGATCTCAAATCTA
Found at i:48306420 original size:45 final size:44
Alignment explanation
Indices: 48306308--48306529 Score: 234
Period size: 45 Copynumber: 5.0 Consensus size: 44
48306298 ATGCTATCTC
** * *
48306308 ATATCGATGCCATTGTCCCAGACAGGGTCTTACACGAATCA-A-
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACAT
* * * * *
48306350 ATAT-GATGTCGATGTCCCAAACATGGTCTTACACGTAACCACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACG-AAACACAT
*
48306394 ATATCGATGCCAACATCCCAGACATGGTCTTACACGAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACAT
* * *
48306438 ATATCGATGCCAACGTCCTAGACGTGGTCTTACACAAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACAC-GAAACACAT
** * * *
48306483 ATATCGATGCTGACGTCCCAAACGTGGTCTTACATGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACG-AAACACAT
48306528 AT
1 AT
48306530 CGAAATCCTA
Statistics
Matches: 152, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
41 26 0.17
42 8 0.05
43 1 0.01
44 43 0.28
45 74 0.49
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (44 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:48306491 original size:89 final size:88
Alignment explanation
Indices: 48306308--48306529 Score: 241
Period size: 89 Copynumber: 2.5 Consensus size: 88
48306298 ATGCTATCTC
** * * * * *
48306308 ATATCGATGCCATTGTCCCAGACAGGGTCTTACACGAATCA-A-ATATGATGTCGATGTCCCAAA
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACATATATGATGCCAACGTCCCAAA
** *
48306371 CATGGTCTTACACGTAACCACAT
66 CATGGTCTTACACAAAAACACAT
* * *
48306394 ATATCGATGCCAACATCCCAGACATGGTCTTACACGAAACACATATATCGATGCCAACGTCCTAG
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACATATAT-GATGCCAACGTCCCAA
*
48306459 ACGTGGTCTTACACAAAAACACAT
65 ACATGGTCTTACACAAAAACACAT
** * * *
48306483 ATATCGATGCTGACGTCCCAAACGTGGTCTTACATGAAAACACATAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACG-AAACACATAT
48306530 CGAAATCCTA
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
86 36 0.32
87 1 0.01
88 4 0.04
89 61 0.54
90 10 0.09
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (88 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACATATATGATGCCAACGTCCCAAA
CATGGTCTTACACAAAAACACAT
Found at i:48307100 original size:15 final size:15
Alignment explanation
Indices: 48307077--48307107 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48307067 TCAAAAATTC
48307077 CAATACAAAACATAT
1 CAATACAAAACATAT
*
48307092 CAATCCAAAACATAT
1 CAATACAAAACATAT
48307107 C
1 C
48307108 CTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:48307638 original size:14 final size:15
Alignment explanation
Indices: 48307621--48307649 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
48307611 TCACGAAAAT
48307621 TTCACACAT-ATAAA
1 TTCACACATAATAAA
48307635 TTCACACATAATAAA
1 TTCACACATAATAAA
48307650 CACTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:48308389 original size:33 final size:33
Alignment explanation
Indices: 48308347--48308413 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
48308337 TACAACAACA
*
48308347 AATCGATCTAAATAGGGTCTAAAAATTATGTTC
1 AATCGATCTAAATAAGGTCTAAAAATTATGTTC
48308380 AATCGATCTAAATAAGGTCTAAAAATTATGTTC
1 AATCGATCTAAATAAGGTCTAAAAATTATGTTC
48308413 A
1 A
48308414 TCAAATCCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (33 bp):
AATCGATCTAAATAAGGTCTAAAAATTATGTTC
Found at i:48313374 original size:13 final size:13
Alignment explanation
Indices: 48313356--48313380 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48313346 ACAAACGATT
48313356 AAATTTTCACACG
1 AAATTTTCACACG
48313369 AAATTTTCACAC
1 AAATTTTCACAC
48313381 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:48318487 original size:54 final size:53
Alignment explanation
Indices: 48318428--48318542 Score: 178
Period size: 54 Copynumber: 2.2 Consensus size: 53
48318418 AAATTGATAC
* *
48318428 CAATATAAAATTTTAACATGAATACTTAATGGTATAATTAATAATTCAATTTT
1 CAATATAAAATTTTAACACGAATACTTAATGGCATAATTAATAATTCAATTTT
* *
48318481 ACAATATAAAATTTTAACACGAATATTTTATGGCATAATTAATAATTCAATTTT
1 -CAATATAAAATTTTAACACGAATACTTAATGGCATAATTAATAATTCAATTTT
48318535 -AATATAAA
1 CAATATAAA
48318543 TATTCAATAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
52 8 0.14
54 49 0.86
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (53 bp):
CAATATAAAATTTTAACACGAATACTTAATGGCATAATTAATAATTCAATTTT
Found at i:48319695 original size:101 final size:100
Alignment explanation
Indices: 48319521--48319721 Score: 393
Period size: 101 Copynumber: 2.0 Consensus size: 100
48319511 ATGCATCACA
48319521 TAACTACCTTATGATTTAGTGCAAATCAAGTCACATATAAACTTGGAGTACATACCTGTTTAACC
1 TAACTACCTTATGATTTAGTGCAAATCAAGTCACATATAAACTTGGAGTACATACCTGTTTAACC
48319586 TTTCGCATTGAATATATTTATAAGCAATTCTTATT
66 TTTCGCATTGAATATATTTATAAGCAATTCTTATT
48319621 TAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACATACCTGTTTAAC
1 TAACTACCTTATGATTTAGTGCAAATCAAG-TCACATATAAACTTGGAGTACATACCTGTTTAAC
48319686 CTTTCGCATTGAATATATTTATAAGCAATTCTTATT
65 CTTTCGCATTGAATATATTTATAAGCAATTCTTATT
48319722 ACGAAGTCTT
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
100 30 0.30
101 70 0.70
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (100 bp):
TAACTACCTTATGATTTAGTGCAAATCAAGTCACATATAAACTTGGAGTACATACCTGTTTAACC
TTTCGCATTGAATATATTTATAAGCAATTCTTATT
Found at i:48319777 original size:37 final size:37
Alignment explanation
Indices: 48319727--48319805 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
48319717 TTATTACGAA
* * *
48319727 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
48319764 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
48319801 GTCTT
1 GTCTT
48319806 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:48320001 original size:47 final size:47
Alignment explanation
Indices: 48319923--48320449 Score: 946
Period size: 47 Copynumber: 11.2 Consensus size: 47
48319913 CCCTTCGGGA
* * * * * *
48319923 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48319970 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320064 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320111 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320158 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320205 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320252 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320299 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
48320346 CCTATTCACATATATACACTTTCACATTAATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320394 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48320441 CTTATCACA
1 CTTATCACA
48320450 ATTTAGAATT
Statistics
Matches: 463, Mismatches: 16, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
47 419 0.90
48 44 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48332008 original size:132 final size:132
Alignment explanation
Indices: 48331771--48332034 Score: 510
Period size: 132 Copynumber: 2.0 Consensus size: 132
48331761 TAAATTGTAC
*
48331771 AAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGCCTAGTTTCAAATGAGAT
1 AAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGACTAGTTTCAAATGAGAT
*
48331836 CAAATACAACACATTTTGAGTTCTGTAAAATGAGAAATTGGATTCGTAGTGAAGAGTGGTCAGAA
66 CAAATACAACACATTTTGAATTCTGTAAAATGAGAAATTGGATTCGTAGTGAAGAGTGGTCAGAA
48331901 TA
131 TA
48331903 AAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGACTAGTTTCAAATGAGAT
1 AAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGACTAGTTTCAAATGAGAT
48331968 CAAATACAACACATTTTGAATTCTGTAAAATGAGAAATTGGATTCGTAGTGAAGAGTGGTCAGAA
66 CAAATACAACACATTTTGAATTCTGTAAAATGAGAAATTGGATTCGTAGTGAAGAGTGGTCAGAA
48332033 TA
131 TA
48332035 GTCAAACAGT
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 130 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (132 bp):
AAAAATGATTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGACTAGTTTCAAATGAGAT
CAAATACAACACATTTTGAATTCTGTAAAATGAGAAATTGGATTCGTAGTGAAGAGTGGTCAGAA
TA
Found at i:48332782 original size:40 final size:40
Alignment explanation
Indices: 48332723--48332910 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
48332713 GAGCACTGGA
* *
48332723 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
48332763 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
48332803 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
*
48332843 ATATATCCGGGTTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
48332883 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
48332911 ATGTGTTTGC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:48338907 original size:200 final size:200
Alignment explanation
Indices: 48338564--48338963 Score: 678
Period size: 200 Copynumber: 2.0 Consensus size: 200
48338554 AAAGATGCCG
* *
48338564 AACAGAAAGTAAAAATAATTCGTGAAAGTCTGAAGACAGCCACAGATCGTCAGAAATCGTATGCG
1 AACAGAAAGTAAAAATAATCCGTGAAAGTCTGAAGACAGCCACAGATCGTCAAAAATCGTATGCG
* *
48338629 GATTTGAAACGAAAAGACATTGAATATCAGGAGGGAGATAAAGTGTTTCTTAAAGTTTTGCCTTG
66 GATTTGAAACGAAAAGACATTGAATATCAGGAGGGAGATAAAGTGTTCCTTAAAGTTTCGCCTTG
*
48338694 GAAAAAGGTACTCAGATTTGGCCGTAAGGGCAAGTTGAGTCC-GAGATTTATTGGGCCGTACGAA
131 GAAAAAGGTACTCAGATTTGGCCGTAAGGGCAAGTTGA-ACCTGAGATTTATTGGGCCGTACGAA
48338758 ATCTCC
195 ATCTCC
**
48338764 AACAGAAAGTAAAGGTAATCCGTGAAAGTCTGAA-AGCAGCCACAGATCGTCAAAAATCGTATGC
1 AACAGAAAGTAAAAATAATCCGTGAAAGTCTGAAGA-CAGCCACAGATCGTCAAAAATCGTATGC
* *
48338828 GGATTTGAAACGAAAGGACATTGAATATCAGGTGGGAGATAAAGTGTTCCTTAAAGTTTCGCCTT
65 GGATTTGAAACGAAAAGACATTGAATATCAGGAGGGAGATAAAGTGTTCCTTAAAGTTTCGCCTT
*
48338893 GGAAAAAGGTACTCAGGTTTGGCCGTAAGGGCAAGTTGAACCTGAGATTTATTGGGCCGTACGAA
130 GGAAAAAGGTACTCAGATTTGGCCGTAAGGGCAAGTTGAACCTGAGATTTATTGGGCCGTACGAA
48338958 ATCTCC
195 ATCTCC
48338964 GAACGAGTTG
Statistics
Matches: 188, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
199 3 0.02
200 185 0.98
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.24
Consensus pattern (200 bp):
AACAGAAAGTAAAAATAATCCGTGAAAGTCTGAAGACAGCCACAGATCGTCAAAAATCGTATGCG
GATTTGAAACGAAAAGACATTGAATATCAGGAGGGAGATAAAGTGTTCCTTAAAGTTTCGCCTTG
GAAAAAGGTACTCAGATTTGGCCGTAAGGGCAAGTTGAACCTGAGATTTATTGGGCCGTACGAAA
TCTCC
Found at i:48339064 original size:70 final size:70
Alignment explanation
Indices: 48338977--48339115 Score: 260
Period size: 70 Copynumber: 2.0 Consensus size: 70
48338967 CGAGTTGGTT
*
48338977 CGGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAAAATATTCACGACGTCTTTCATGTTTCG
1 CGGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAAAAGATTCACGACGTCTTTCATGTTTCG
48339042 ATGCC
66 ATGCC
*
48339047 CGGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAAAGGATTCACGACGTCTTTCATGTTTCG
1 CGGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAAAAGATTCACGACGTCTTTCATGTTTCG
48339112 ATGC
66 ATGC
48339116 TTCGACGCTA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.35
Consensus pattern (70 bp):
CGGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAAAAGATTCACGACGTCTTTCATGTTTCG
ATGCC
Found at i:48339325 original size:62 final size:62
Alignment explanation
Indices: 48339226--48339349 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
48339216 TCGTGAAGTG
48339226 AAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGGATCGA
1 AAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGGATCGA
* *
48339288 AAGGAGTTGCGGAACAAAAGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAACACGGGATCGA
1 AAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGGATCGA
48339350 GGAAGCTACT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (62 bp):
AAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGGATCGA
Found at i:48341387 original size:39 final size:41
Alignment explanation
Indices: 48341292--48341475 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
48341282 TTGAATGATG
*
48341292 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
48341331 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
48341371 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
48341410 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
48341450 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48341476 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:48341427 original size:79 final size:81
Alignment explanation
Indices: 48341292--48341475 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
48341282 TTGAATGATG
48341292 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
48341355 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
48341370 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
48341431 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
48341450 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48341476 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:48341497 original size:79 final size:79
Alignment explanation
Indices: 48341344--48341508 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
48341334 GGACTAAGAT
* ** *
48341344 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
48341409 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
48341423 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
48341485 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
48341502 CCGAAGG
1 CCGAAGG
48341509 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:48346153 original size:47 final size:47
Alignment explanation
Indices: 48346090--48346254 Score: 205
Period size: 47 Copynumber: 3.5 Consensus size: 47
48346080 ATCCATAAGT
48346090 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCAC
* * * * *
48346137 GAACTCGGACTTAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT-C-TCA-C
48346183 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCAC
*
48346230 GAACTCGGACTTAACTCAACGAGTT
1 GAACTCGGACTCAACTCAACGAGTT
48346255 CGGACATTCG
Statistics
Matches: 98, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 27 0.28
47 51 0.52
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCAC
Found at i:48346202 original size:93 final size:93
Alignment explanation
Indices: 48346043--48346307 Score: 467
Period size: 93 Copynumber: 2.8 Consensus size: 93
48346033 CGCCCATAAG
* * * * *
48346043 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48346108 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTTGGATGCCTAGTTACATCTCA
48346136 CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48346201 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTTGGATGCCTAGTTACATCTCA
*
48346229 CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGATTCAACTCA
1 CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
48346294 ACGAGTTCGGATGC
66 ACGAGTTTGGATGC
48346308 TCAACCATCC
Statistics
Matches: 165, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 165 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTTGGATGCCTAGTTACATCTCA
Found at i:48346304 original size:46 final size:46
Alignment explanation
Indices: 48346036--48346304 Score: 248
Period size: 46 Copynumber: 5.8 Consensus size: 46
48346026 TGTAACCCGC
* * * *
48346036 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
48346082 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
48346132 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
48346175 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
48346225 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
48346268 CCATAAGTGAACTCGGATTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
48346305 TGCTCAACCA
Statistics
Matches: 179, Mismatches: 26, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 4 0.02
45 4 0.02
46 86 0.48
47 54 0.30
48 4 0.02
49 4 0.02
50 7 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48362082 original size:69 final size:69
Alignment explanation
Indices: 48361965--48362101 Score: 220
Period size: 69 Copynumber: 2.0 Consensus size: 69
48361955 TTGGGACTTC
* * *
48361965 GTTTCCCTATACCAGACTCATAAATATTTAATAAAAATATTTGCAGAGTAATATTAGAAGTGAAT
1 GTTTCCCTAAACCAGACTCATAAATATTTAATAAAAAAACTTGCAGAGTAATATTAGAAGTGAAT
48362030 TAAT
66 TAAT
* * *
48362034 GTTTCCCTAAACCAGACTCGTAAATATTTAATAAAAAAACTTGTAGAGTTATATTAGAAGTGAAT
1 GTTTCCCTAAACCAGACTCATAAATATTTAATAAAAAAACTTGCAGAGTAATATTAGAAGTGAAT
48362099 TAA
66 TAA
48362102 ATTTTAGTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (69 bp):
GTTTCCCTAAACCAGACTCATAAATATTTAATAAAAAAACTTGCAGAGTAATATTAGAAGTGAAT
TAAT
Found at i:48365846 original size:33 final size:32
Alignment explanation
Indices: 48365805--48366066 Score: 118
Period size: 33 Copynumber: 7.8 Consensus size: 32
48365795 TTGCATTCAT
*
48365805 ATGTAAGACCATAGATAGGCTATGGCATTCT-G
1 ATGTAAGACCATA-ATAGGCTATGGCATTTTAG
* * * * *
48365837 ATGATAAGACCATAACTGGGTTATGGCACTATGG
1 ATG-TAAGACCATAA-TAGGCTATGGCATTTTAG
* * * *
48365871 ATGTAAGATCATAATTGGAAC-ATGACAATGTTTAT
1 ATGTAAGACCATAATAGG--CTATGGC-AT-TTTAG
* * *
48365906 ATGTAAGACCATAGCTGGGCTATGGCATTCT-G
1 ATGTAAGACCATA-ATAGGCTATGGCATTTTAG
* * * * *
48365938 ATGTTAAGACCATAACTGGGTTATGGCACTATGG
1 ATG-TAAGACCATAA-TAGGCTATGGCATTTTAG
* ** * * *
48365972 ACGTAAGACCATGGTTGGACCATGGCAGTGTTTAT
1 ATGTAAGACCATAATAGG-CTATGGCA-T-TTTAG
*
48366007 ATGTAAGACCATAGCTAGGCTATGGCATTTT-G
1 ATGTAAGACCATA-ATAGGCTATGGCATTTTAG
*
48366039 ATGATAAGACCATAACTAGGTTATGGCA
1 ATG-TAAGACCATAA-TAGGCTATGGCA
48366067 CTACGAATGT
Statistics
Matches: 172, Mismatches: 40, Indels: 35
0.70 0.16 0.14
Matches are distributed among these distances:
32 16 0.09
33 100 0.58
34 12 0.07
35 38 0.22
36 6 0.03
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (32 bp):
ATGTAAGACCATAATAGGCTATGGCATTTTAG
Found at i:48366080 original size:33 final size:32
Alignment explanation
Indices: 48366007--48366084 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 32
48365997 CAGTGTTTAT
* * **
48366007 ATGTAAGACCATAGCTAGGCTATGGCATTTTG
1 ATGTAAGACCATAACTAGGCTATGGCACTACG
*
48366039 ATGATAAGACCATAACTAGGTTATGGCACTACG
1 ATG-TAAGACCATAACTAGGCTATGGCACTACG
48366072 AATGTAAGACCAT
1 -ATGTAAGACCAT
48366085 GGCAGGGCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
32 3 0.08
33 33 0.85
34 3 0.08
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27
Consensus pattern (32 bp):
ATGTAAGACCATAACTAGGCTATGGCACTACG
Found at i:48366096 original size:101 final size:101
Alignment explanation
Indices: 48365803--48366132 Score: 450
Period size: 101 Copynumber: 3.3 Consensus size: 101
48365793 AGTTGCATTC
*
48365803 ATATGTAAGACCATAGATAGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGGCACTA
1 ATATGTAAGACCATAGCTAGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGGCACTA
* ** *
48365868 TGGATGTAAGATCATAATTGGAACATGACAATGTTT
66 TGGATGTAAGACCATGGTTGGACCATGACAATGTTT
* *
48365904 ATATGTAAGACCATAGCTGGGCTATGGCATTCTGATGTTAAGACCATAACTGGGTTATGGCACTA
1 ATATGTAAGACCATAGCTAGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGGCACTA
* * *
48365969 TGGACGTAAGACCATGGTTGGACCATGGCAGTGTTT
66 TGGATGTAAGACCATGGTTGGACCATGACAATGTTT
* *
48366005 ATATGTAAGACCATAGCTAGGCTATGGCATTTTGATGATAAGACCATAACTAGGTTATGGCACTA
1 ATATGTAAGACCATAGCTAGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGGCACTA
* * ** * *
48366070 CGAATGTAAGACCATGGCAGGGCCATGACAATG--G
66 TGGATGTAAGACCATGGTTGGACCATGACAATGTTT
* *
48366104 ATATATAAGACCATAG-TTGGACTATGGCA
1 ATATGTAAGACCATAGCTAGG-CTATGGCA
48366133 CAAAGGAAAC
Statistics
Matches: 203, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
98 3 0.01
99 23 0.11
101 177 0.87
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (101 bp):
ATATGTAAGACCATAGCTAGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGGCACTA
TGGATGTAAGACCATGGTTGGACCATGACAATGTTT
Found at i:48382039 original size:43 final size:42
Alignment explanation
Indices: 48381923--48382045 Score: 106
Period size: 43 Copynumber: 2.9 Consensus size: 42
48381913 GACTTCTGTT
* * * *
48381923 TTACATGTAAGACCATGTCTGGGACATCGACATCGTATCTGA
1 TTACATGTAAGACCATGTCTGGTACGTTGGCATCGTATCTGA
* * * * * *
48381965 TTTCGTGTAAGACCCTGTCCAGGATA-G-TGGCATCGATGTTTGA
1 TTACATGTAAGACCATGT-CTGG-TACGTTGGCATCG-TATCTGA
*
48382008 TTACATGTAAGACCATGTCTGGTACGTTGGCATTGTAT
1 TTACATGTAAGACCATGTCTGGTACGTTGGCATCGTAT
48382046 ATGCTTTCTG
Statistics
Matches: 60, Mismatches: 16, Indels: 10
0.70 0.19 0.12
Matches are distributed among these distances:
41 2 0.03
42 27 0.45
43 30 0.50
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGTACGTTGGCATCGTATCTGA
Found at i:48383246 original size:35 final size:35
Alignment explanation
Indices: 48383207--48383277 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
48383197 TTAATGATTG
48383207 ATCTTTAATGCTTCAATGCTTATGAAATGAATGTT
1 ATCTTTAATGCTTCAATGCTTATGAAATGAATGTT
48383242 ATCTTTAATGCTTCAATGCTTATGAAATGAATGTT
1 ATCTTTAATGCTTCAATGCTTATGAAATGAATGTT
48383277 A
1 A
48383278 ATGTTTCAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.42
Consensus pattern (35 bp):
ATCTTTAATGCTTCAATGCTTATGAAATGAATGTT
Found at i:48383285 original size:29 final size:30
Alignment explanation
Indices: 48383210--48383287 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 30
48383200 ATGATTGATC
48383210 TTTAATGCTTCAATGCTTATGAAATGAATG
1 TTTAATGCTTCAATGCTTATGAAATGAATG
48383240 TTATCTTTAATGCTTCAATGCTTATGAAATGAATG
1 -----TTTAATGCTTCAATGCTTATGAAATGAATG
*
48383275 -TTAATGTTTCAAT
1 TTTAATGCTTCAAT
48383288 TTTGTCCGGT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
29 12 0.29
35 30 0.71
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (30 bp):
TTTAATGCTTCAATGCTTATGAAATGAATG
Found at i:48391474 original size:19 final size:20
Alignment explanation
Indices: 48391452--48391490 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
48391442 TGTCTTCAAA
48391452 GTTTAAATGATTTG-ATGAT
1 GTTTAAATGATTTGAATGAT
* *
48391471 GTTTAATTGCTTTGAATGAT
1 GTTTAAATGATTTGAATGAT
48391491 ATGTTTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (20 bp):
GTTTAAATGATTTGAATGAT
Found at i:48398289 original size:39 final size:39
Alignment explanation
Indices: 48398241--48398383 Score: 162
Period size: 39 Copynumber: 3.7 Consensus size: 39
48398231 ATGTTTTGAG
* *
48398241 TATTGTGATATATGCTTAAATGTTGTAAGATTATATGTA
1 TATTATGATATATGCTTAAATGTTATAAGATTATATGTA
* *** *
48398280 TATTATGATATATGCTTGAATGTTATGTCATTATACG-A
1 TATTATGATATATGCTTAAATGTTATAAGATTATATGTA
* * **
48398318 GTACTGTGATATACACTTAAATGTTATAAGATTATATGTA
1 -TATTATGATATATGCTTAAATGTTATAAGATTATATGTA
*
48398358 TATTATGATATATGCTTGAATGTTAT
1 TATTATGATATATGCTTAAATGTTAT
48398384 GTCATTATAC
Statistics
Matches: 81, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
38 1 0.01
39 79 0.98
40 1 0.01
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.45
Consensus pattern (39 bp):
TATTATGATATATGCTTAAATGTTATAAGATTATATGTA
Found at i:48398328 original size:78 final size:78
Alignment explanation
Indices: 48398238--48398422 Score: 334
Period size: 78 Copynumber: 2.4 Consensus size: 78
48398228 AAGATGTTTT
* ** *
48398238 GAGTATTGTGATATATGCTTAAATGTTGTAAGATTATATGTATATTATGATATATGCTTGAATGT
1 GAGTACTGTGATATACACTTAAATGTTATAAGATTATATGTATATTATGATATATGCTTGAATGT
48398303 TATGTCATTATAC
66 TATGTCATTATAC
48398316 GAGTACTGTGATATACACTTAAATGTTATAAGATTATATGTATATTATGATATATGCTTGAATGT
1 GAGTACTGTGATATACACTTAAATGTTATAAGATTATATGTATATTATGATATATGCTTGAATGT
48398381 TATGTCATTATAC
66 TATGTCATTATAC
48398394 GAGTACTGTGATATACACTTAAATGTTAT
1 GAGTACTGTGATATACACTTAAATGTTAT
48398423 TTCATAACTC
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 103 1.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.43
Consensus pattern (78 bp):
GAGTACTGTGATATACACTTAAATGTTATAAGATTATATGTATATTATGATATATGCTTGAATGT
TATGTCATTATAC
Found at i:48398406 original size:39 final size:39
Alignment explanation
Indices: 48398298--48398427 Score: 154
Period size: 39 Copynumber: 3.3 Consensus size: 39
48398288 TATATGCTTG
48398298 AATGTTATGTCATTATACGAGTACTGTGATATACACTTA
1 AATGTTATGTCATTATACGAGTACTGTGATATACACTTA
*** * * * ** *
48398337 AATGTTATAAGATTATATGTA-TATTATGATATATGCTTG
1 AATGTTATGTCATTATACG-AGTACTGTGATATACACTTA
48398376 AATGTTATGTCATTATACGAGTACTGTGATATACACTTA
1 AATGTTATGTCATTATACGAGTACTGTGATATACACTTA
*
48398415 AATGTTATTTCAT
1 AATGTTATGTCAT
48398428 AACTCAATGG
Statistics
Matches: 70, Mismatches: 19, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
38 1 0.01
39 68 0.97
40 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (39 bp):
AATGTTATGTCATTATACGAGTACTGTGATATACACTTA
Found at i:48398658 original size:78 final size:78
Alignment explanation
Indices: 48398529--48398681 Score: 191
Period size: 78 Copynumber: 2.0 Consensus size: 78
48398519 AAGATGTTTT
* * * * * *
48398529 GAGTATTGTGATATATGCTTAAATGTTGTAAGATTATATGTATATTATGATATATGCTTGAATGT
1 GAGTATTGTGATATATACTTAAAAGTTATAAGATTATATGAATATTATGATAAATGCTTAAATGT
48398594 TATGTCATTATAC
66 TATGTCATTATAC
** * *
48398607 GAGTATTGTGATATATACTTAAAAGTTATGTGATTTTAT-AACTATTGTGATAAATGCTTAAATG
1 GAGTATTGTGATATATACTTAAAAGTTATAAGATTATATGAA-TATTATGATAAATGCTTAAATG
*
48398671 TTATGTGATTA
65 TTATGTCATTA
48398682 AATGTGTAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 1 0.02
78 62 0.98
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (78 bp):
GAGTATTGTGATATATACTTAAAAGTTATAAGATTATATGAATATTATGATAAATGCTTAAATGT
TATGTCATTATAC
Found at i:48398673 original size:291 final size:291
Alignment explanation
Indices: 48398131--48398681 Score: 987
Period size: 291 Copynumber: 1.9 Consensus size: 291
48398121 CATTTTTATG
48398131 TTTCATAACTCAATGGTCAAATTATCTCAAATTATGAATATTTGTGTAATGTGATTTGCGTTTAT
1 TTTCATAACTCAATGGTCAAATTATCTCAAATTATGAATATTTGTGTAATGTGATTTGCGTTTAT
48398196 ATGACATATGACCATTATGAAATTTATGTATAAAGATGTTTTGAGTATTGTGATATATGCTTAAA
66 ATGACATATGACCATTATGAAATTTATGTATAAAGATGTTTTGAGTATTGTGATATATGCTTAAA
48398261 TGTTGTAAGATTATATGTATATTATGATATATGCTTGAATGTTATGTCATTATACGAGTACTGTG
131 TGTTGTAAGATTATATGTATATTATGATATATGCTTGAATGTTATGTCATTATACGAGTACTGTG
* * * *
48398326 ATATACACTTAAATGTTATAAGATTATATGTATATTATGATATATGCTTGAATGTTATGTCATTA
196 ATATACACTTAAAAGTTATAAGATTATATGAATATTATGATAAATGCTTAAATGTTATGTCATTA
48398391 TACGAGTACTGTGATATACACTTAAATGTTA
261 TACGAGTACTGTGATATACACTTAAATGTTA
48398422 TTTCATAACTCAATGGTCAAATTATCTCAAATTATGAATATTTGTGTAATGTGATTTGCGTTTAT
1 TTTCATAACTCAATGGTCAAATTATCTCAAATTATGAATATTTGTGTAATGTGATTTGCGTTTAT
48398487 ATGACATATGACCATTATGAAATTTATGTATAAAGATGTTTTGAGTATTGTGATATATGCTTAAA
66 ATGACATATGACCATTATGAAATTTATGTATAAAGATGTTTTGAGTATTGTGATATATGCTTAAA
*
48398552 TGTTGTAAGATTATATGTATATTATGATATATGCTTGAATGTTATGTCATTATACGAGTATTGTG
131 TGTTGTAAGATTATATGTATATTATGATATATGCTTGAATGTTATGTCATTATACGAGTACTGTG
* ** * * *
48398617 ATATATACTTAAAAGTTATGTGATTTTAT-AACTATTGTGATAAATGCTTAAATGTTATGTGATT
196 ATATACACTTAAAAGTTATAAGATTATATGAA-TATTATGATAAATGCTTAAATGTTATGTCATT
48398681 A
260 A
48398682 AATGTGTAAT
Statistics
Matches: 248, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
290 1 0.00
291 247 1.00
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (291 bp):
TTTCATAACTCAATGGTCAAATTATCTCAAATTATGAATATTTGTGTAATGTGATTTGCGTTTAT
ATGACATATGACCATTATGAAATTTATGTATAAAGATGTTTTGAGTATTGTGATATATGCTTAAA
TGTTGTAAGATTATATGTATATTATGATATATGCTTGAATGTTATGTCATTATACGAGTACTGTG
ATATACACTTAAAAGTTATAAGATTATATGAATATTATGATAAATGCTTAAATGTTATGTCATTA
TACGAGTACTGTGATATACACTTAAATGTTA
Found at i:48398697 original size:39 final size:39
Alignment explanation
Indices: 48398528--48398707 Score: 173
Period size: 39 Copynumber: 4.6 Consensus size: 39
48398518 AAAGATGTTT
* * **
48398528 TGAGTATTGTGATATATGCTTAAATGTTGTAAGATTATA
1 TGAGTATTATGATATATGCTTAAATGTTATGTGATTATA
* *
48398567 TGTA-TATTATGATATATGCTTGAATGTTATGTCATTATA
1 TG-AGTATTATGATATATGCTTAAATGTTATGTGATTATA
* * * * *
48398606 CGAGTATTGTGATATATACTTAAAAGTTATGTGATTTTA
1 TGAGTATTATGATATATGCTTAAATGTTATGTGATTATA
* * * * *
48398645 TAACTATTGTGATAAATGCTTAAATGTTATGTGATTAAA
1 TGAGTATTATGATATATGCTTAAATGTTATGTGATTATA
* * *
48398684 TGTGTAATATGATACATGCTTAAA
1 TGAGTATTATGATATATGCTTAAA
48398708 AGTGAATATG
Statistics
Matches: 112, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
38 1 0.01
39 110 0.98
40 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.43
Consensus pattern (39 bp):
TGAGTATTATGATATATGCTTAAATGTTATGTGATTATA
Found at i:48403058 original size:27 final size:26
Alignment explanation
Indices: 48403000--48403113 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 26
48402990 AGGAAGTGTC
* *
48403000 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
48403028 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
48403055 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* **
48403083 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
48403109 CTGGT
1 CTGGT
48403114 AGCCATGCTG
Statistics
Matches: 78, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
26 8 0.10
27 39 0.50
28 31 0.40
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:48403085 original size:55 final size:54
Alignment explanation
Indices: 48403000--48403113 Score: 158
Period size: 55 Copynumber: 2.1 Consensus size: 54
48402990 AGGAAGTGTC
* *
48403000 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * *
48403055 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTACCACATTATCTGTT
48403109 CTGGT
1 CTGGT
48403114 AGCCATGCTG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 21 0.40
55 32 0.60
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:48409309 original size:62 final size:62
Alignment explanation
Indices: 48409233--48409358 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
48409223 CAGGTGGCAA
48409233 AGTGGCATGTGGCGCCACTGGGAAGGCTATAAAAGTGGCGTGTAGAAGTGTAGGAAGAGCCC
1 AGTGGCATGTGGCGCCACTGGGAAGGCTATAAAAGTGGCGTGTAGAAGTGTAGGAAGAGCCC
48409295 AGTGGCATGTGGCGCCACTGGGAAGGCTATAAAAGTGGCGTGTAGAAGTGTAGGAAGAGCCC
1 AGTGGCATGTGGCGCCACTGGGAAGGCTATAAAAGTGGCGTGTAGAAGTGTAGGAAGAGCCC
48409357 AG
1 AG
48409359 GTTCGAGTTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.28, C:0.16, G:0.39, T:0.17
Consensus pattern (62 bp):
AGTGGCATGTGGCGCCACTGGGAAGGCTATAAAAGTGGCGTGTAGAAGTGTAGGAAGAGCCC
Found at i:48410482 original size:16 final size:16
Alignment explanation
Indices: 48410461--48410503 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
48410451 CTAGATCGAC
*
48410461 AAAAGCCGAAACGTTG
1 AAAAGCCGAAACGTCG
*
48410477 AAAAGCCGAAATGTCG
1 AAAAGCCGAAACGTCG
*
48410493 AAATGCCGAAA
1 AAAAGCCGAAA
48410504 AGCCAGTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAACGTCG
Found at i:48410984 original size:27 final size:26
Alignment explanation
Indices: 48410925--48411035 Score: 96
Period size: 27 Copynumber: 4.1 Consensus size: 26
48410915 AGAAAGCGTC
* * *
48410925 CTGGTGGCTATGCTACAAATTATCTGAT
1 CTGGTGGCTCTGC--CACATTATCTGTT
*
48410953 ATGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
**
48410980 CTGGTGGCTCTATCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
48411008 CTGGTGACTTTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
48411034 CT
1 CT
48411036 AGTAGCCATG
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.10
27 36 0.51
28 27 0.39
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:48413575 original size:28 final size:28
Alignment explanation
Indices: 48413482--48413590 Score: 96
Period size: 28 Copynumber: 3.9 Consensus size: 28
48413472 GATTGTAAAT
* * *
48413482 GTGATTTGGGCCTAGT-GGCTATATGAAT
1 GTGA-TTGGGCCTAATGGGCCATATGAAA
*
48413510 GTGATTTGGGCCTAATGGGCCACAT-AAA
1 GTGA-TTGGGCCTAATGGGCCATATGAAA
*
48413538 TGTGAATGGGCCTAATGGGCCATATGAAA
1 -GTGATTGGGCCTAATGGGCCATATGAAA
* * * *
48413567 GAGATTGGGCATAGTAGGCCATAT
1 GTGATTGGGCCTAATGGGCCATAT
48413591 ATATAGGTAT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 54 0.81
29 13 0.19
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATGAAA
Found at i:48413587 original size:56 final size:57
Alignment explanation
Indices: 48413477--48413587 Score: 127
Period size: 56 Copynumber: 2.0 Consensus size: 57
48413467 AGCATGATTG
* * * * * * *
48413477 TAAATGTGATTTGGGCCTAGTGGCTATATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTGGGCATAATAGGCCACA
*
48413534 TAAATGTGA-ATGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCATAGTAGGCCA
1 TAAATGTGATATGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCATAATAGGCCA
48413588 TATATATAGG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
56 23 0.51
57 22 0.49
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.27
Consensus pattern (57 bp):
TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTGGGCATAATAGGCCACA
Found at i:48416318 original size:52 final size:52
Alignment explanation
Indices: 48416205--48416382 Score: 208
Period size: 52 Copynumber: 3.5 Consensus size: 52
48416195 TGGATACCCG
* * * *
48416205 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAA-ATCTAC-CTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAGATAT-CTCTTCTTCACAAA
* *
48416256 GTGGCCTTCACATGGTACCACAGTTGTGACCAAAGATATCT-TTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGATATCTCTTCTTCACAAA
* *
48416308 GTGGCATTCACATAGTACCACACTTGTGACCAAGCTATCTCTTC-TCA-AAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAGATATCTCTTCTTCACAAA
48416358 -TGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
48416383 AGTTACTAGT
Statistics
Matches: 111, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
49 24 0.22
50 3 0.03
51 35 0.32
52 46 0.41
53 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAGATATCTCTTCTTCACAAA
Found at i:48416371 original size:49 final size:49
Alignment explanation
Indices: 48416206--48416382 Score: 185
Period size: 51 Copynumber: 3.5 Consensus size: 49
48416196 GGATACCCGG
* * * * * * * *
48416206 TGGCCTGCACATAGTACCACCCTTGTAGTCAAATCTACCTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGT-GACCAAGCTATC-TCTTCTCAAAA
* * *
48416257 TGGCCTTCACATGGTACCACAGTTGTGACCAAAGATATCT-TTCTTCACAAA
1 TGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATCTCTTC-TCA-AAA
*
48416308 GTGGCATTCACATAGTACCACACTTGTGACCAAGCTATCTCTTCTCAAAA
1 -TGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTCTTCTCAAAA
48416358 TGGCCTTCACATAGTACCACACTTG
1 TGGCCTTCACATAGTACCACACTTG
48416383 AGTTACTAGT
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
49 27 0.26
50 8 0.08
51 40 0.38
52 30 0.29
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (49 bp):
TGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTCTTCTCAAAA
Found at i:48422021 original size:17 final size:17
Alignment explanation
Indices: 48421999--48422036 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
48421989 CAGCTCAACA
*
48421999 AAGTTAGAATAAAGAAC
1 AAGTTACAATAAAGAAC
48422016 AAGTTACAATAAAGAAC
1 AAGTTACAATAAAGAAC
48422033 AAGT
1 AAGT
48422037 ATCCATTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.58, C:0.08, G:0.16, T:0.18
Consensus pattern (17 bp):
AAGTTACAATAAAGAAC
Found at i:48425360 original size:20 final size:20
Alignment explanation
Indices: 48425335--48425381 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
48425325 AGGGACTAAA
* *
48425335 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
* *
48425355 ATGAAAAATTCTCAAATTTT
1 ATGAAAAATTCTAAAATTTG
48425375 ATGAAAA
1 ATGAAAA
48425382 CATATGCTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:48430763 original size:241 final size:240
Alignment explanation
Indices: 48430343--48431061 Score: 1228
Period size: 241 Copynumber: 3.0 Consensus size: 240
48430333 TTAGCTTGTA
*
48430343 ACGATGATAACTAAAGAGTGAGATTGACTTAAAACCTATACGAATACAAAAATGG-A-AGTATGG
1 ACGATGATAACTAAAGAGTGAGATTGACTTAAAACCTATACAAATACAAAAATGGAAGAGTATGG
* *
48430406 TTTAGAATGAGCTTTTACTTGTTGTGTATGACATGAGACAGTGGTGTGACATCCTGATATTAGGG
66 TTTAGAATGAGCTTTTACTTGTTGTGTATGACATGAGGCAGTGGTGTGACATCCTAATATTAGGG
**
48430471 CTTGGCGACCAAGTAGGGTATAGGGTGTTACATTTGGTAGTATCAGAGCTCTAGGTACATTAACT
131 CTTGGCGACCAAGCCGGGTATAGGGTGTTACATTTGGTAGTATCAGAGCTCTAGGTACATTAACT
* *
48430536 CTTGGACCTAGGTGATTATTATGTGTTTAGAATTTTGAAGCTCAT
196 CTTGGACCTAGGTGATTATTGTGTGTTTGGAATTTTGAAGCTCAT
48430581 ACGATGATAACTAAAGAGTGAGATTGACTTAAAACCTATACAAATACAAAAATGGAAGATGTATG
1 ACGATGATAACTAAAGAGTGAGATTGACTTAAAACCTATACAAATACAAAAATGGAAGA-GTATG
* *
48430646 GTTTAGAATGAGCTTTTACATGTTGTGTATGATATGAGGCAGTGGTGTGACATCCTAATATTAGG
65 GTTTAGAATGAGCTTTTACTTGTTGTGTATGACATGAGGCAGTGGTGTGACATCCTAATATTAGG
*
48430711 GCTTGGTGACCAAGCCGGGTATAGGGTGTTACATTTGGTAGTATCAGAGCTCTAGGTACATTAAC
130 GCTTGGCGACCAAGCCGGGTATAGGGTGTTACATTTGGTAGTATCAGAGCTCTAGGTACATTAAC
48430776 TCTTGGACCTAGGTGATTATTGTGTGTTTGGAATTTTGAAGCTCAT
195 TCTTGGACCTAGGTGATTATTGTGTGTTTGGAATTTTGAAGCTCAT
*
48430822 ACGATGATAACTAAAGAGTGAGATTGACTTAAAACCTATACAAATACAAAAAAGGAAGACGTATG
1 ACGATGATAACTAAAGAGTGAGATTGACTTAAAACCTATACAAATACAAAAATGGAAGA-GTATG
*
48430887 GTTTAGAATGAGCTTTTACTTGTTGTGTATGACATGAGGCAATGGTGTGACATCCTAATATTAGG
65 GTTTAGAATGAGCTTTTACTTGTTGTGTATGACATGAGGCAGTGGTGTGACATCCTAATATTAGG
* * * * * *
48430952 GCTTGGCGACTAAGCCGGGTATATGGTGTTACA-TTGGTGGTATTAGAGCTCCAGGTTCATTAAC
130 GCTTGGCGACCAAGCCGGGTATAGGGTGTTACATTTGGTAGTATCAGAGCTCTAGGTACATTAAC
*
48431016 TCTTGGACCTAGGTGATTGTTGTGTGTTTGGAATTTTGAAGCTCAT
195 TCTTGGACCTAGGTGATTATTGTGTGTTTGGAATTTTGAAGCTCAT
48431062 GAGTCTAAAT
Statistics
Matches: 455, Mismatches: 23, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
238 54 0.12
239 1 0.00
240 73 0.16
241 327 0.72
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.32
Consensus pattern (240 bp):
ACGATGATAACTAAAGAGTGAGATTGACTTAAAACCTATACAAATACAAAAATGGAAGAGTATGG
TTTAGAATGAGCTTTTACTTGTTGTGTATGACATGAGGCAGTGGTGTGACATCCTAATATTAGGG
CTTGGCGACCAAGCCGGGTATAGGGTGTTACATTTGGTAGTATCAGAGCTCTAGGTACATTAACT
CTTGGACCTAGGTGATTATTGTGTGTTTGGAATTTTGAAGCTCAT
Found at i:48435568 original size:27 final size:27
Alignment explanation
Indices: 48435538--48435660 Score: 97
Period size: 27 Copynumber: 4.6 Consensus size: 27
48435528 ATGACTGAAA
48435538 TGCCCTTACATGATAAAACGACTGTTT
1 TGCCCTTACATGATAAAACGACTGTTT
* *
48435565 TGCCCTT--ATGAGGTAAAATGACTGTGT
1 TGCCCTTACATGA--TAAAACGACTGTTT
** * *
48435592 TGCCCTTATGTGGTAAAATGACTGTTT
1 TGCCCTTACATGATAAAACGACTGTTT
*** * *
48435619 TGCCCTTTTTTGGTAAGACGACTGTTT
1 TGCCCTTACATGATAAAACGACTGTTT
* *
48435646 TACCCCTACATGATA
1 TGCCCTTACATGATA
48435661 TATGTTTATA
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
25 4 0.05
27 71 0.92
29 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
TGCCCTTACATGATAAAACGACTGTTT
Found at i:48437930 original size:45 final size:45
Alignment explanation
Indices: 48437879--48438056 Score: 270
Period size: 45 Copynumber: 4.0 Consensus size: 45
48437869 ATACACTATA
*
48437879 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
48437924 ATACTATTCGGGCCTTTGAGCCCAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* * *
48437969 ATACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAA
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
48438014 ATACTATTCAGG-CTTTCGAGCCTAGCAGG-TGTAATGCCGGTGA
1 ATACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
48438057 AATGATATCG
Statistics
Matches: 122, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
44 16 0.13
45 106 0.87
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:48440023 original size:18 final size:18
Alignment explanation
Indices: 48440000--48440035 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
48439990 TAGGACCTGC
*
48440000 ATACTGCAGTGATTACTG
1 ATACTGCACTGATTACTG
*
48440018 ATACTGCACTGTTTACTG
1 ATACTGCACTGATTACTG
48440036 CTACAGTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (18 bp):
ATACTGCACTGATTACTG
Found at i:48442906 original size:52 final size:52
Alignment explanation
Indices: 48442849--48442951 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
48442839 CATATTCCCG
*
48442849 TTGCCACACCTTAACCCTATGACTTGTCCACGGTCGCAATATATTAATTAAT
1 TTGCCACACCTTAACCCTATGACTTGTCCACGGTCGCAATAAATTAATTAAT
48442901 TTGCCACACCTTAACCCTATGACTTGTCCACGGTCGCAATAAATTAATTAA
1 TTGCCACACCTTAACCCTATGACTTGTCCACGGTCGCAATAAATTAATTAA
48442952 GTTTTATGTA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (52 bp):
TTGCCACACCTTAACCCTATGACTTGTCCACGGTCGCAATAAATTAATTAAT
Found at i:48443105 original size:29 final size:28
Alignment explanation
Indices: 48443032--48443108 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 28
48443022 ATGACCTACA
*
48443032 AGGCCCAATCACATTTATATGGCCCATT
1 AGGCCCAATCACATTTATATGGCCCATC
* * *
48443060 AAGCCAAAATCATATTTATATGGCCCATC
1 AGGCC-CAATCACATTTATATGGCCCATC
48443089 AGGCCCAATTCACATTTATA
1 AGGCCCAA-TCACATTTATA
48443109 GTCATGCTCA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
AGGCCCAATCACATTTATATGGCCCATC
Found at i:48443348 original size:16 final size:16
Alignment explanation
Indices: 48443327--48443365 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
48443317 AAACTTTTGG
48443327 CTTTTTGGCATTTCGA
1 CTTTTTGGCATTTCGA
*
48443343 CTTTTTGGCATTTCGG
1 CTTTTTGGCATTTCGA
48443359 CTTTTTG
1 CTTTTTG
48443366 CCGATCTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.08, C:0.18, G:0.21, T:0.54
Consensus pattern (16 bp):
CTTTTTGGCATTTCGA
Found at i:48446740 original size:27 final size:27
Alignment explanation
Indices: 48446707--48446783 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
48446697 TGCCCTACAT
* *
48446707 GGTAAAATTACTGTTTTTCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
48446734 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGA
48446761 GGTAAAATGACTGTTTTGCCCTT
1 GGTAAAATGACTGTTTTGCCCTT
48446784 TTATGGTAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.42
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGA
Found at i:48446745 original size:53 final size:54
Alignment explanation
Indices: 48446683--48446800 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 54
48446673 CCCTAGTGGA
* *
48446683 TAAAATGACTAAAATGCCC-TACATGGTAAAATTACTGTTTTTCCCTTATGA-GG
1 TAAAATGACTAAAATGCCCTTACATGGTAAAATGACTGTTTTGCCCTT-TGATGG
*** ** *
48446736 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTTTATGG
1 TAAAATGACTAAAATGCCCTTACATGGTAAAATGACTGTTTTGCCCTTTGATGG
*
48446790 TAAGATGACTA
1 TAAAATGACTA
48446801 TTTTACCCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
53 18 0.33
54 36 0.67
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (54 bp):
TAAAATGACTAAAATGCCCTTACATGGTAAAATGACTGTTTTGCCCTTTGATGG
Found at i:48446777 original size:54 final size:54
Alignment explanation
Indices: 48446706--48446815 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
48446696 ATGCCCTACA
* * * *
48446706 TGGTAAAATTACTGTTTTTCCCTTATGA-GGTAAAATGACTATTTTGCCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTT-TGATGGTAAAATGACTATTTTACCCCTATG
* *
48446760 TGGTAAAATGACTGTTTTGCCCTTTTATGGTAAGATGACTATTTTACCCCTATG
1 TGGTAAAATGACTGTTTTGCCCTTTGATGGTAAAATGACTATTTTACCCCTATG
48446814 TG
1 TG
48446816 ATGTATGTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
53 2 0.04
54 47 0.96
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (54 bp):
TGGTAAAATGACTGTTTTGCCCTTTGATGGTAAAATGACTATTTTACCCCTATG
Found at i:48446790 original size:27 final size:27
Alignment explanation
Indices: 48446705--48446804 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
48446695 AATGCCCTAC
* * * *
48446705 ATGGTAAAATTACTGTTTTTCCCTTATG
1 ATGGTAAAATGACTATTTTGCCCTT-TT
*
48446733 A-GGTAAAATGACTATTTTGCCCTTAT
1 ATGGTAAAATGACTATTTTGCCCTTTT
* *
48446759 GTGGTAAAATGACTGTTTTGCCCTTTT
1 ATGGTAAAATGACTATTTTGCCCTTTT
*
48446786 ATGGTAAGATGACTATTTT
1 ATGGTAAAATGACTATTTT
48446805 ACCCCTATGT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (27 bp):
ATGGTAAAATGACTATTTTGCCCTTTT
Found at i:48448509 original size:13 final size:13
Alignment explanation
Indices: 48448491--48448516 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48448481 AAGATAGTTA
48448491 GAGCTTTTGGCTT
1 GAGCTTTTGGCTT
48448504 GAGCTTTTGGCTT
1 GAGCTTTTGGCTT
48448517 TTCGGAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (13 bp):
GAGCTTTTGGCTT
Found at i:48449270 original size:39 final size:39
Alignment explanation
Indices: 48449227--48449631 Score: 457
Period size: 39 Copynumber: 10.4 Consensus size: 39
48449217 TGTTTTGATC
*
48449227 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTA-T
1 ATTGTGATATATGCTTAAATGTTATGTGATTATATG-AGT
* * *
48449266 ATTGTAATATATGCTTGAAA-GTTAAGTGATTATACGAGT
1 ATTGTGATATATGCTT-AAATGTTATGTGATTATATGAGT
*
48449305 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTA-T
1 ATTGTGATATATGCTTAAATGTTATGTGATTATATG-AGT
* * *
48449344 ATTGTAATATATGCTTGAAA-GTTAAGTGATTATACGAGT
1 ATTGTGATATATGCTT-AAATGTTATGTGATTATATGAGT
*
48449383 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTA-T
1 ATTGTGATATATGCTTAAATGTTATGTGATTATATG-AGT
* * *
48449422 ATTGTAATATATGCTTGAAA-GTTAAGTGATTATACGAGT
1 ATTGTGATATATGCTT-AAATGTTATGTGATTATATGAGT
*
48449461 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTA-T
1 ATTGTGATATATGCTTAAATGTTATGTGATTATATG-AGT
* * * * * *
48449500 ATTATGATAAATTCTTGAATGATATGTGATTATACGAGT
1 ATTGTGATATATGCTTAAATGTTATGTGATTATATGAGT
* * *
48449539 ATTGTGATGTATGCTTAAACGTTATTTGATTATATGAGT
1 ATTGTGATATATGCTTAAATGTTATGTGATTATATGAGT
* *
48449578 ATTGTGATATATGCTTAAATGTTATGTGATTAAATGTGT
1 ATTGTGATATATGCTTAAATGTTATGTGATTATATGAGT
*
48449617 CA-TGTGATACATGCT
1 -ATTGTGATATATGCT
48449632 GAAAAGTGAA
Statistics
Matches: 306, Mismatches: 46, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
38 13 0.04
39 280 0.92
40 13 0.04
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.43
Consensus pattern (39 bp):
ATTGTGATATATGCTTAAATGTTATGTGATTATATGAGT
Found at i:48449612 original size:15 final size:17
Alignment explanation
Indices: 48449592--48449624 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
48449582 TGATATATGC
48449592 TTAAATGT-T-ATGTGA
1 TTAAATGTGTCATGTGA
48449607 TTAAATGTGTCATGTGA
1 TTAAATGTGTCATGTGA
48449624 T
1 T
48449625 ACATGCTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.45
Consensus pattern (17 bp):
TTAAATGTGTCATGTGA
Found at i:48449631 original size:78 final size:78
Alignment explanation
Indices: 48449227--48449609 Score: 617
Period size: 78 Copynumber: 4.9 Consensus size: 78
48449217 TGTTTTGATC
48449227 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTAATATATGCTTGAAAGTTAAG
1 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTAATATATGCTTGAAAGTTAAG
48449292 TGATTATACGAGT
66 TGATTATACGAGT
48449305 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTAATATATGCTTGAAAGTTAAG
1 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTAATATATGCTTGAAAGTTAAG
48449370 TGATTATACGAGT
66 TGATTATACGAGT
48449383 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTAATATATGCTTGAAAGTTAAG
1 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTAATATATGCTTGAAAGTTAAG
48449448 TGATTATACGAGT
66 TGATTATACGAGT
* * * * * * *
48449461 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTATGATAAATTCTTGAATGATATG
1 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTAATATATGCTTGAAAGTTAAG
48449526 TGATTATACGAGT
66 TGATTATACGAGT
* * ** *
48449539 ATTGTGATGTATGCTTAAACGTTATTTGATTATATG-AGTATTGTGATATATGCTT-AAATGTTA
1 ATTGTGATATATGCTTAAATGTTATGAGATTATATGTA-TATTGTAATATATGCTTGAAA-GTTA
*
48449602 TGTGATTA
64 AGTGATTA
48449610 AATGTGTCAT
Statistics
Matches: 287, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
77 3 0.01
78 284 0.99
ACGTcount: A:0.34, C:0.04, G:0.19, T:0.43
Consensus pattern (78 bp):
ATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTAATATATGCTTGAAAGTTAAG
TGATTATACGAGT
Found at i:48451531 original size:85 final size:85
Alignment explanation
Indices: 48451300--48451520 Score: 433
Period size: 85 Copynumber: 2.6 Consensus size: 85
48451290 GGCCGGCCAT
48451300 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
48451365 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
48451385 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
48451450 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
48451470 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAGACATGTTG
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTG
48451521 TGTTGGTGCA
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 135 1.00
ACGTcount: A:0.38, C:0.09, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:48453610 original size:47 final size:47
Alignment explanation
Indices: 48453556--48453684 Score: 177
Period size: 47 Copynumber: 2.7 Consensus size: 47
48453546 TTAGGATTCT
* * *
48453556 ATGTGATGGATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * * *
48453603 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
48453650 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAG
48453685 TCCCGAAGGG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.31, C:0.09, G:0.33, T:0.28
Consensus pattern (47 bp):
ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:48453859 original size:37 final size:37
Alignment explanation
Indices: 48453803--48453881 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
48453793 CCGAGCTCTA
* * * *
48453803 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
48453840 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
48453877 AAGAC
1 AAGAC
48453882 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:48456303 original size:46 final size:45
Alignment explanation
Indices: 48456250--48456518 Score: 211
Period size: 46 Copynumber: 5.8 Consensus size: 45
48456240 TGTTTGAGCA
* * *
48456250 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATAC-AAGG
* *** * *
48456296 TCCGAACTCATTGAGTTGAGTCCAAGTTCGAGAGATGTA-ACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATGGATACAAGG
* * * *
48456341 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATAC-AAGG
* *** * *
48456389 TCCGAACTCATTGAGTTGAGTCCAAGTTCGAGAGATGTA-ACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATGGATACAAGG
* * * *
48456434 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATAC-AAGG
*
48456482 -CCCAAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGG
48456519 GCGGGTTACA
Statistics
Matches: 170, Mismatches: 42, Indels: 22
0.73 0.18 0.09
Matches are distributed among these distances:
45 7 0.04
46 95 0.56
47 64 0.38
48 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACAAGG
Found at i:48456358 original size:93 final size:93
Alignment explanation
Indices: 48456247--48456510 Score: 458
Period size: 93 Copynumber: 2.8 Consensus size: 93
48456237 GGATGTTTGA
*
48456247 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATGTCCGAACTCATTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATGTCCGAACTCATTGAGT
48456312 TGAGTCCAAGTTCGAGAGATGTAACTAG
66 TGAGTCCAAGTTCGAGAGATGTAACTAG
48456340 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATGTCCGAACTCATTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATGTCCGAACTCATTGAGT
48456405 TGAGTCCAAGTTCGAGAGATGTAACTAG
66 TGAGTCCAAGTTCGAGAGATGTAACTAG
* * * *
48456433 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCCAAGCTCATTGAG
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATGTCCGAA-CTCATTGAG
*
48456497 TTGAGTCCGAGTTC
65 TTGAGTCCAAGTTC
48456511 ACTTATGGGC
Statistics
Matches: 164, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
92 4 0.02
93 160 0.98
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATGTCCGAACTCATTGAGT
TGAGTCCAAGTTCGAGAGATGTAACTAG
Found at i:48456364 original size:47 final size:47
Alignment explanation
Indices: 48456296--48456464 Score: 182
Period size: 47 Copynumber: 3.6 Consensus size: 47
48456286 GATTCGAATG
48456296 TCCGAACTCATTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
* * * *** * ** *
48456343 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TTCGAA
1 TCCGAACTCATTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
48456387 TGTCCGAACTCATTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
1 --TCCGAACTCATTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
* * *
48456436 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCATTGAGTTGAGTCCAAGTTC
48456465 ACTTATGGAT
Statistics
Matches: 94, Mismatches: 23, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 30 0.32
47 56 0.60
48 1 0.01
49 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (47 bp):
TCCGAACTCATTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
Found at i:48458668 original size:37 final size:37
Alignment explanation
Indices: 48458615--48458717 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
48458605 CGAATAGTCC
*
48458615 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
48458652 CCACACATAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
48458689 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
48458718 ATATATTTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:48458916 original size:48 final size:48
Alignment explanation
Indices: 48458858--48459147 Score: 481
Period size: 48 Copynumber: 6.0 Consensus size: 48
48458848 ATATACACAC
*
48458858 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48458906 ATCTCATACATATTTCACACTAGTCATTCGGCTTTACTACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48458954 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48459002 ATCTCATACATATTTCACACTAGTCATTCGGCTTTACTACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48459050 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48459098 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48459146 AT
1 AT
48459148 ATTTATCTTG
Statistics
Matches: 223, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 223 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:48461027 original size:80 final size:80
Alignment explanation
Indices: 48460930--48461088 Score: 309
Period size: 80 Copynumber: 2.0 Consensus size: 80
48460920 CTTTCATTTA
48460930 AACAACCCACATAACTTATTCATTCATGAACACATTCGGTACTATGCATGTTTACAAATATTTCT
1 AACAACCCACATAACTTATTCATTCATGAACACATTCGGTACTATGCATGTTTACAAATATTTCT
*
48460995 TGGTACCTTTATCAC
66 TGGCACCTTTATCAC
48461010 AACAACCCACATAACTTATTCATTCATGAACACATTCGGTACTATGCATGTTTACAAATATTTCT
1 AACAACCCACATAACTTATTCATTCATGAACACATTCGGTACTATGCATGTTTACAAATATTTCT
48461075 TGGCACCTTTATCA
66 TGGCACCTTTATCA
48461089 TATTTTCACA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.35
Consensus pattern (80 bp):
AACAACCCACATAACTTATTCATTCATGAACACATTCGGTACTATGCATGTTTACAAATATTTCT
TGGCACCTTTATCAC
Found at i:48464993 original size:30 final size:30
Alignment explanation
Indices: 48464959--48465018 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
48464949 AAAAAGATAG
* *
48464959 AATGTACTAGCAATAACATCTGGTGTAGTA
1 AATGTACCAGCAATAACATCTAGTGTAGTA
*
48464989 AATGTACCATCAATAACATCTAGTGTAGTA
1 AATGTACCAGCAATAACATCTAGTGTAGTA
48465019 GCTTTCTATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (30 bp):
AATGTACCAGCAATAACATCTAGTGTAGTA
Found at i:48467944 original size:40 final size:40
Alignment explanation
Indices: 48467898--48467977 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
48467888 TAAACTTCAA
48467898 TATGTTCAGTGAACAATAACAAATCAATAATTATTCTCTC
1 TATGTTCAGTGAACAATAACAAATCAATAATTATTCTCTC
*
48467938 TATGTTCAGTGAACAATAACGAATCAATAATTATTCTCTC
1 TATGTTCAGTGAACAATAACAAATCAATAATTATTCTCTC
48467978 AACACAATCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (40 bp):
TATGTTCAGTGAACAATAACAAATCAATAATTATTCTCTC
Found at i:48468314 original size:14 final size:16
Alignment explanation
Indices: 48468295--48468334 Score: 57
Period size: 14 Copynumber: 2.6 Consensus size: 16
48468285 AATGGTTTAT
48468295 TTCAATTTAT-TAAC-
1 TTCAATTTATATAACA
48468309 TTCAATTTCATATAACA
1 TTCAATTT-ATATAACA
48468326 TTCAATTTA
1 TTCAATTTA
48468335 ATGCATTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 8 0.35
15 2 0.09
16 5 0.22
17 8 0.35
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (16 bp):
TTCAATTTATATAACA
Found at i:48470086 original size:15 final size:15
Alignment explanation
Indices: 48470066--48470095 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
48470056 ATAGCAAAAT
48470066 TTCAAAAACAATCAC
1 TTCAAAAACAATCAC
48470081 TTCAAAAACAATCAC
1 TTCAAAAACAATCAC
48470096 GTAGGTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (15 bp):
TTCAAAAACAATCAC
Found at i:48473474 original size:93 final size:93
Alignment explanation
Indices: 48473344--48473515 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
48473334 CGCCCATAAG
* * *
48473344 CGAAATCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
48473409 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* * *
48473437 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
48473502 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
48473516 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:48473512 original size:46 final size:46
Alignment explanation
Indices: 48473337--48473512 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
48473327 TGTAACCCGC
* * * * *
48473337 CCATAAGCGAAATCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
48473383 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
48473433 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
48473476 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
48473513 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48480147 original size:18 final size:18
Alignment explanation
Indices: 48480094--48480145 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
48480084 AGGCCGTTAA
*
48480094 GGGCCTCGATGGGCCGAAAT
1 GGGCCTCG-TGGGCC-CAAT
*
48480114 GGGCCTTGTGGGCCCAAT
1 GGGCCTCGTGGGCCCAAT
48480132 GGG-CTCGTGGGCCC
1 GGGCCTCGTGGGCCC
48480146 CACATGGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 10 0.34
18 6 0.21
19 6 0.21
20 7 0.24
ACGTcount: A:0.12, C:0.29, G:0.42, T:0.17
Consensus pattern (18 bp):
GGGCCTCGTGGGCCCAAT
Found at i:48480404 original size:27 final size:27
Alignment explanation
Indices: 48480373--48480457 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
48480363 ACCCAATATT
* *
48480373 GGTAAAATTACCAAAATACCCTTGTAG
1 GGTAAAATAACCATAATACCCTTGTAG
* ** * *
48480400 TGTAAAATAACTGTAATGCCCTAGTAG
1 GGTAAAATAACCATAATACCCTTGTAG
* * *
48480427 GGTAAAATGACCATAATACCCCTGTAT
1 GGTAAAATAACCATAATACCCTTGTAG
48480454 GGTA
1 GGTA
48480458 GAATGACGAT
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
GGTAAAATAACCATAATACCCTTGTAG
Found at i:48483763 original size:39 final size:39
Alignment explanation
Indices: 48483707--48483855 Score: 183
Period size: 39 Copynumber: 3.8 Consensus size: 39
48483697 AACATGTTTT
* * *
48483707 TGAGTATTGCGACATATGTTTGAATGTTATGTGATTATA
1 TGAGTATTGCGATATATGCTTGAATGTTATGTAATTATA
*
48483746 TGAGTATTGCGATATATGCTTGAATGTTATGTAATCATA
1 TGAGTATTGCGATATATGCTTGAATGTTATGTAATTATA
* ****
48483785 TGAGTATTGTC-ATATGTGCTTGAGCACTATGTAATTATA
1 TGAGTATTG-CGATATATGCTTGAATGTTATGTAATTATA
* *
48483824 TGAGTATTGTGATATATGCTTAAATGTTATGT
1 TGAGTATTGCGATATATGCTTGAATGTTATGT
48483856 GATCATCTGT
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 90 0.99
40 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (39 bp):
TGAGTATTGCGATATATGCTTGAATGTTATGTAATTATA
Found at i:48483883 original size:78 final size:78
Alignment explanation
Indices: 48483734--48483883 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 78
48483724 GTTTGAATGT
* * * *
48483734 TATGTGATTATATGAGTATTGCGATATATGCTTGAATGTTATGTAATCATATGAGTATTGTCATA
1 TATGTAATTATATGAGTATTGCGATATATGCTTAAATGTTATGTAATCATATGAGTAATATCATA
*
48483799 TGTGCTTGAGCAC
66 TATGCTTGAGCAC
* * * * *
48483812 TATGTAATTATATGAGTATTGTGATATATGCTTAAATGTTATGTGATCATCTGTGTAATATGATA
1 TATGTAATTATATGAGTATTGCGATATATGCTTAAATGTTATGTAATCATATGAGTAATATCATA
48483877 TATGCTT
66 TATGCTT
48483884 AAAAGTAAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 62 1.00
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.43
Consensus pattern (78 bp):
TATGTAATTATATGAGTATTGCGATATATGCTTAAATGTTATGTAATCATATGAGTAATATCATA
TATGCTTGAGCAC
Found at i:48486156 original size:37 final size:37
Alignment explanation
Indices: 48486077--48486156 Score: 85
Period size: 37 Copynumber: 2.2 Consensus size: 37
48486067 TATTCACTCA
*
48486077 TCACTCCTTTAGCTTTTAACCATTCTATGCTTTTATC
1 TCACTCCTTTAGCTTTTAACCATTCAATGCTTTTATC
* *
48486114 ACACTCGCTTT-GCTTTTAACC-TTCACAATGCTTTTGT-
1 TCACTC-CTTTAGCTTTTAACCATT--CAATGCTTTTATC
48486151 TCACTC
1 TCACTC
48486157 ATTAATTTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
36 2 0.06
37 20 0.56
38 14 0.39
ACGTcount: A:0.19, C:0.29, G:0.07, T:0.45
Consensus pattern (37 bp):
TCACTCCTTTAGCTTTTAACCATTCAATGCTTTTATC
Found at i:48488186 original size:48 final size:46
Alignment explanation
Indices: 48488080--48488247 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 46
48488070 TTTGTGTGCT
*
48488080 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
* ** * *
48488126 AGTGTAAAACATGTCTGGGACATGCATTGGCCCCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AG-TA-TGAGAGCC
* * * ** *
48488174 AGTTTAAGACATGTCTGGGACATGCATC-GGCATTAAG-GCGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA--CAGTATGAGAGCC
48488220 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
48488248 GGCCTCGCGA
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 59 0.60
47 4 0.04
48 33 0.33
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
Found at i:48488287 original size:94 final size:94
Alignment explanation
Indices: 48488119--48488296 Score: 234
Period size: 94 Copynumber: 1.9 Consensus size: 94
48488109 GCCACAGTAT
* * *
48488119 GAGAGCCAGTGTAAAACATGTCTGGGACATGCATTGGCCCCGAGATATTTAAGCCAGTTTAAGAC
1 GAGAGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCCCGAGATA-TCAAGCCAGTGTAAGAC
48488184 ATGTCTGGGACAT-GCATCGGCATTAAGGC
65 ATGTCTGGGACATGGCATCGGCATTAAGGC
* * * *
48488213 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGAGATA-CAAGCTAGTGTGAGA
1 GAGAGCCAGTGTAAAACATGTCTGGGACATGCATCGGCC-C-CGAGATATCAAGCCAGTGTAAGA
* *
48488277 CCTGTTTGGGACATGGCATC
64 CATGTCTGGGACATGGCATC
48488297 AGCTTGTTGT
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
94 59 0.82
95 6 0.08
96 7 0.10
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (94 bp):
GAGAGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCCCGAGATATCAAGCCAGTGTAAGACA
TGTCTGGGACATGGCATCGGCATTAAGGC
Found at i:48489147 original size:16 final size:16
Alignment explanation
Indices: 48489126--48489157 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
48489116 TATATTGTCT
48489126 ACACGGGTAGACACAC
1 ACACGGGTAGACACAC
48489142 ACACGGGTAGACACAC
1 ACACGGGTAGACACAC
48489158 GGGCGTGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.31, G:0.25, T:0.06
Consensus pattern (16 bp):
ACACGGGTAGACACAC
Found at i:48493246 original size:20 final size:20
Alignment explanation
Indices: 48493221--48493260 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
48493211 GGCTCAGTGT
48493221 AAGACGGGAAATGAATCAGA
1 AAGACGGGAAATGAATCAGA
48493241 AAGACGGGAAATGAATCAGA
1 AAGACGGGAAATGAATCAGA
48493261 GTTTAGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.30, T:0.10
Consensus pattern (20 bp):
AAGACGGGAAATGAATCAGA
Found at i:48497320 original size:20 final size:21
Alignment explanation
Indices: 48497281--48497320 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
48497271 GTTATAATGA
48497281 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
48497302 CCACACGGGTGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
48497321 ATTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:48505141 original size:14 final size:14
Alignment explanation
Indices: 48505119--48505157 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
48505109 CCAGAAAAGT
*
48505119 AAATCATTTTCCAG
1 AAATCATTTTCCAA
*
48505133 AAATTATTTTCCAA
1 AAATCATTTTCCAA
48505147 AAATCATTTTC
1 AAATCATTTTC
48505158 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:48511857 original size:24 final size:24
Alignment explanation
Indices: 48511836--48511887 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
48511826 AATCAATGTC
*
48511836 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATGCT
*
48511860 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATGCT
48511884 AAAT
1 AAAT
48511888 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGCT
Found at i:48514345 original size:38 final size:38
Alignment explanation
Indices: 48514294--48514372 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
48514284 TTATAAGGCT
*
48514294 CTACGAGACCTTAAAACATGCTTGTATGAGGTTTGGGA
1 CTACGAGACCTTAAAACATGCTTGTACGAGGTTTGGGA
48514332 CTACGAGACCTTAAAACATGCTTGTACGAGGTTTGGGA
1 CTACGAGACCTTAAAACATGCTTGTACGAGGTTTGGGA
48514370 CTA
1 CTA
48514373 AACCGATAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (38 bp):
CTACGAGACCTTAAAACATGCTTGTACGAGGTTTGGGA
Found at i:48515842 original size:43 final size:43
Alignment explanation
Indices: 48515697--48515846 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
48515687 TATCTTGGAT
* * * *
48515697 ATGGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATA-CAATGCCAATGTCCCAGAC
* * * *
48515740 AAGGTCTTATACGAAATCA-TATA-ATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATACA--ATGCCAATGTCCCAGAC
48515783 ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
* *
48515826 ATGGTCTTTCATGTAATCACA
1 ATGGTCTTACACGTAATCACA
48515847 TCTCGGCAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
43 85 0.96
44 3 0.03
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
Found at i:48522953 original size:12 final size:12
Alignment explanation
Indices: 48522938--48522962 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48522928 ATATTGAATG
48522938 ATCACTTGATAT
1 ATCACTTGATAT
48522950 ATCACTTGATAT
1 ATCACTTGATAT
48522962 A
1 A
48522963 AATTATGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (12 bp):
ATCACTTGATAT
Found at i:48523154 original size:52 final size:50
Alignment explanation
Indices: 48523072--48523260 Score: 153
Period size: 50 Copynumber: 3.7 Consensus size: 50
48523062 GTTGTGAGAA
* *** **
48523072 CACATGTGTAGTACTATGTATAGGCTACTATGTGTGTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGCGCAGGCTACTATGTGTACAAAATGG--TTAGGT
* * * * *
48523124 CCCGTGTGTGGTACTAAGCGCAGGCTACTATGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGCGCAGGCTACTATGTGTACAAAATGGTTAGGT
* *** * * *
48523174 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTGATAGCTTTGAT
1 CACATGTGTAGTACTAAGCGCAGGCTACTATGTGTACAAAAT-GGTTAGGT
* * * *
48523225 CACATGTGTGGTACTAAGTGCAGGCCATTATGTGTA
1 CACATGTGTAGTACTAAGCGCAGGCTACTATGTGTA
48523261 AGAGTGGTTT
Statistics
Matches: 114, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
50 43 0.38
51 38 0.33
52 33 0.29
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGCGCAGGCTACTATGTGTACAAAATGGTTAGGT
Found at i:48523243 original size:51 final size:50
Alignment explanation
Indices: 48523128--48523353 Score: 197
Period size: 50 Copynumber: 4.5 Consensus size: 50
48523118 TTAGGTCCCG
* * * * *
48523128 TGTGTGGTACTAAGCGCAGGCTACTATGTGTACCAGATGGTTAGGTCACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGATGCTTTGATCACA
* * *
48523178 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTGATAGCTTTGATCACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGAT-GCTTTGATCACA
* *
48523229 TGTGTGGTACTAAGTGCAGGCCATTATGTGTA--AGAGTGGTTTTGATCACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGA-T-GCTTTGATCACA
* * * * * ** *
48523279 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGA-CTACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGAT-GCTTTGATC-ACA
* * *
48523330 AGGGTGGTACTATGTGCAGGCCAC
1 TGTGTGGTACTAAGTGCAGGCCAC
48523354 CGGGTATCCG
Statistics
Matches: 148, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
49 2 0.01
50 74 0.50
51 70 0.47
52 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (50 bp):
TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGATGCTTTGATCACA
Done.