Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 153 of 276
Found at i:49754797 original size:22 final size:22
Alignment explanation
Indices: 49754746--49754797 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
49754736 TAGGATTAAT
* *
49754746 AAAACATATTTAACATTTTATA
1 AAAACATATTTAAAATTCTATA
*
49754768 ACAACATA-TTAAAATTCTATA
1 AAAACATATTTAAAATTCTATA
49754789 AAAATCATA
1 AAAA-CATA
49754798 AAAATATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAACATATTTAAAATTCTATA
Found at i:49754815 original size:37 final size:37
Alignment explanation
Indices: 49754764--49754847 Score: 89
Period size: 37 Copynumber: 2.2 Consensus size: 37
49754754 TTTAACATTT
*
49754764 TATAACAACATATTAAAATTC-TATAAAAATCATAAAAA
1 TATAA-AAAATATTAAAATTCTTAT-AAAATCATAAAAA
* * * * *
49754802 TATAAAAAATATTAATATTGTTATAAACTTATAAAAT
1 TATAAAAAATATTAAAATTCTTATAAAATCATAAAAA
49754839 TATAAAAAA
1 TATAAAAAA
49754848 AATCATAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
37 31 0.79
38 8 0.21
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (37 bp):
TATAAAAAATATTAAAATTCTTATAAAATCATAAAAA
Found at i:49755393 original size:9 final size:9
Alignment explanation
Indices: 49755266--49755400 Score: 62
Period size: 9 Copynumber: 14.6 Consensus size: 9
49755256 AGTTTTTACG
49755266 AATTTTTAT
1 AATTTTTAT
*
49755275 AAGTTTATATT
1 AA-TTTTTA-T
*
49755286 AATTTTAAT
1 AATTTTTAT
49755295 -A-TTTTAT
1 AATTTTTAT
*
49755302 AATTTTTAC
1 AATTTTTAT
49755311 AATTTTTATT
1 AATTTTTA-T
* * *
49755321 ACTTTTAAG
1 AATTTTTAT
* *
49755330 AATTCTAAT
1 AATTTTTAT
49755339 ACATTTTT-T
1 A-ATTTTTAT
**
49755348 AATTTGAAAT
1 AATTT-TTAT
49755358 AAGTTTTTCA-
1 AA-TTTTT-AT
* *
49755368 AATTTATAA
1 AATTTTTAT
49755377 AATCTTTTAT
1 AAT-TTTTAT
49755387 AATTTTTAT
1 AATTTTTAT
49755396 AATTT
1 AATTT
49755401 ATTAGGTTTT
Statistics
Matches: 93, Mismatches: 21, Indels: 24
0.67 0.15 0.17
Matches are distributed among these distances:
7 5 0.05
8 7 0.08
9 43 0.46
10 31 0.33
11 7 0.08
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.56
Consensus pattern (9 bp):
AATTTTTAT
Found at i:49758807 original size:14 final size:14
Alignment explanation
Indices: 49758788--49758816 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
49758778 AATAGTTTAG
49758788 GATACAAGTGACAT
1 GATACAAGTGACAT
49758802 GATACAAGTGACAT
1 GATACAAGTGACAT
49758816 G
1 G
49758817 TCACTAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (14 bp):
GATACAAGTGACAT
Found at i:49758941 original size:52 final size:52
Alignment explanation
Indices: 49758879--49758979 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
49758869 TGTATGCGGT
* *
49758879 ATTCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATGCGATACATGTGGC
1 ATTCGAGCTCGTTGAGTTAGTCCGAGTTCATAATGGATGCAATACATGTGGC
*
49758931 ATTCGAGCTCGTTGAGTTAGTCTGAGTTCATAATGGATGCAATACATGT
1 ATTCGAGCTCGTTGAGTTAGTCCGAGTTCATAATGGATGCAATACATGT
49758980 AATTGGGTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (52 bp):
ATTCGAGCTCGTTGAGTTAGTCCGAGTTCATAATGGATGCAATACATGTGGC
Found at i:49760766 original size:2 final size:2
Alignment explanation
Indices: 49760754--49760783 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
49760744 TAATCATACT
*
49760754 CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
49760784 TATATATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:49766883 original size:37 final size:37
Alignment explanation
Indices: 49766833--49766911 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
49766823 TTATTACGAA
* *
49766833 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCAG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCAG
* *
49766870 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
49766907 GTCTT
1 GTCTT
49766912 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
Found at i:49767108 original size:47 final size:47
Alignment explanation
Indices: 49767030--49767612 Score: 905
Period size: 47 Copynumber: 12.4 Consensus size: 47
49767020 CCCTTCGGGA
* * * * * * *
49767030 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49767077 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49767124 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
49767171 CTTATCTCATATATACACTTTCACATTCATCACATCGGACATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49767218 CTTATCACATGTATACAGTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
49767265 CTTATCACATATATACACTTTCACATTGATCACATCGGCTAATAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
49767312 CGTATCATATATATACACTCTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49767359 CTTATCATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49767406 CTTATCACACATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49767453 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49767500 CTTATCACACATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49767547 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49767594 CTTATCACATATATACACT
1 CTTATCACATATATACACT
49767613 ATCTTGGCAG
Statistics
Matches: 490, Mismatches: 46, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 490 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49773892 original size:26 final size:27
Alignment explanation
Indices: 49773863--49773922 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
49773853 CTACATATAT
*
49773863 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* *
49773889 ATATCTGTATCTGGTGACTTCGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
49773916 ATATCTG
1 ATATCTG
49773923 GCAGCTTCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:49777838 original size:25 final size:24
Alignment explanation
Indices: 49777796--49777852 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
49777786 GTAAGGAGGG
49777796 GATAAGGGAGAAGATTTAGGAGCT
1 GATAAGGGAGAAGATTTAGGAGCT
* *
49777820 GATATGGGAAGAAGTTTTAGGAGCT
1 GATAAGGG-AGAAGATTTAGGAGCT
49777845 GATTAAGG
1 GA-TAAGG
49777853 AGGGCAGTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 7 0.25
25 17 0.61
26 4 0.14
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.25
Consensus pattern (24 bp):
GATAAGGGAGAAGATTTAGGAGCT
Found at i:49779184 original size:27 final size:26
Alignment explanation
Indices: 49779144--49779255 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
49779134 AGGAAGCGTC
* *
49779144 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
49779171 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
49779198 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
49779226 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
49779252 CTGG
1 CTGG
49779256 CAGCTATATT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.68
28 16 0.22
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:49779248 original size:54 final size:54
Alignment explanation
Indices: 49779147--49779253 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
49779137 AAGCGTCCTG
* *
49779147 GTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTA
* * *
49779201 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCT
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCT
49779254 GGCAGCTATA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTA
Found at i:49780593 original size:39 final size:39
Alignment explanation
Indices: 49780530--49780682 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
49780520 CAGTGATGTT
49780530 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
49780569 TATTCGGACTTAAGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
49780608 TATCCAGACTTAAGGTTCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
49780647 TAACCGAACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
49780683 ATATGTCCAG
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 103 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:49780620 original size:78 final size:78
Alignment explanation
Indices: 49780530--49780710 Score: 247
Period size: 78 Copynumber: 2.3 Consensus size: 78
49780520 CAGTGATGTT
* ** * *
49780530 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATTCGGACTTAAGGTCCGTAGGCTA
1 TATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGAACTTAAGGTCCGCAGGCTA
* *
49780595 TGTGCTGGAATTA
66 CGTGCTGGAAATA
*
49780608 TATCCAGACTTAAGGTTCGCAGGCTATGTGCTGGAATTATAACCGAACTTAAGGTCCGCAGGCTA
1 TATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGAACTTAAGGTCCGCAGGCTA
49780673 CGTGCTGGAAATA
66 CGTGCTGGAAATA
* * *
49780686 TGTCCAGGC-TAAAGTCCCGCAGGCT
1 TATCCAGACTTAAGGT-CCGCAGGCT
49780711 TCGAGCTGGT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
77 5 0.06
78 85 0.94
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
TATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGAACTTAAGGTCCGCAGGCTA
CGTGCTGGAAATA
Found at i:49790242 original size:44 final size:47
Alignment explanation
Indices: 49790189--49790404 Score: 144
Period size: 47 Copynumber: 4.7 Consensus size: 47
49790179 TATACGTGCT
* *
49790189 GATGCATGTCCTAGACATGTCTTACACTAGCATGAA-A-C-T-TA-GCC
1 GATGCATGTCCAAGACATGTCTTACACTAGC-T-AACATCATCGAGGCC
* * *
49790233 GATGCATGTCCCAGACACGTCTTACACTGGCTAACATCATCGAGGCC
1 GATGCATGTCCAAGACATGTCTTACACTAGCTAACATCATCGAGGCC
* * *
49790280 GATGCATGTCCAAGACATGTCTTACACTGGC--AC-TCACCTCTACGCC
1 GATGCATGTCCAAGACATGTCTTACACTAGCTAACATCA--TCGAGGCC
* ** ** * * * *
49790326 GATGCCATGTCCCAGATGTGGTCTTACACGGGCTATCATGAT-GCGGCT
1 GATG-CATGTCCAAGACAT-GTCTTACACTAGCTAACATCATCGAGGCC
* *
49790374 GATGCATGTCCCAGACACGTCTTACACTAGC
1 GATGCATGTCCAAGACATGTCTTACACTAGC
49790405 CCTCGTCTCA
Statistics
Matches: 137, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 32 0.23
45 3 0.02
46 22 0.16
47 54 0.39
48 18 0.13
49 1 0.01
50 1 0.01
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (47 bp):
GATGCATGTCCAAGACATGTCTTACACTAGCTAACATCATCGAGGCC
Found at i:49790296 original size:47 final size:47
Alignment explanation
Indices: 49790230--49790401 Score: 172
Period size: 47 Copynumber: 3.7 Consensus size: 47
49790220 ATGAAACTTA
49790230 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTAACATCATCGAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTAACATCATCGAG
* * * *
49790277 GCCGATGCATGTCCAAGACATGTCTTACACTGGC--AC-TCACCTCTAC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTAACATCA--TCGAG
*** * * * *
49790323 GCCGATGCCATGTCCCAGATGTGGTCTTACACGGGCTATCATGAT-GCG
1 GCCGATG-CATGTCCCAGA-CACGTCTTACACTGGCTAACATCATCGAG
*
49790371 GCTGATGCATGTCCCAGACACGTCTTACACT
1 GCCGATGCATGTCCCAGACACGTCTTACACT
49790402 AGCCCTCGTC
Statistics
Matches: 99, Mismatches: 19, Indels: 15
0.74 0.14 0.11
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 19 0.19
47 53 0.54
48 18 0.18
49 1 0.01
50 1 0.01
51 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTAACATCATCGAG
Found at i:49790381 original size:94 final size:91
Alignment explanation
Indices: 49790139--49790404 Score: 266
Period size: 94 Copynumber: 2.9 Consensus size: 91
49790129 CATCGAGGCT
* * * * * * *
49790139 GATGCTATGTCCCAGACGTGGTTTTACACTAGCTCTCGTGTATACGTGCTGATGCATGTCCTAGA
1 GATGCCATGTCCCAGA-GTGGTCTTACACTGGCTATCATG-ATGCG-GCTGATGCATGTCCAAGA
49790204 CATGTCTTACACTAGCATGAAACTTAGCC
63 CATGTCTTACACTAGCATGAAACTTAGCC
*** * * * *
49790233 GATG-CATGTCCCAGACACGTCTTACACTGGCTAACATCATCGAGGCCGATGCATGTCCAAGACA
1 GATGCCATGTCCCAGAGTGGTCTTACACTGGCTATCATGAT-GCGGCTGATGCATGTCCAAGACA
* * *
49790297 TGTCTTACACTGGCACT-CACCTCTACGCC
65 TGTCTTACACTAGCA-TGAAACT-TA-GCC
* *
49790326 GATGCCATGTCCCAGATGTGGTCTTACACGGGCTATCATGATGCGGCTGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGA-GTGGTCTTACACTGGCTATCATGATGCGGCTGATGCATGTCCAAGACA
*
49790391 CGTCTTACACTAGC
65 TGTCTTACACTAGC
49790405 CCTCGTCTCA
Statistics
Matches: 138, Mismatches: 28, Indels: 12
0.78 0.16 0.07
Matches are distributed among these distances:
91 37 0.27
92 18 0.13
93 17 0.12
94 47 0.34
95 19 0.14
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (91 bp):
GATGCCATGTCCCAGAGTGGTCTTACACTGGCTATCATGATGCGGCTGATGCATGTCCAAGACAT
GTCTTACACTAGCATGAAACTTAGCC
Found at i:49790445 original size:94 final size:94
Alignment explanation
Indices: 49790189--49790445 Score: 245
Period size: 94 Copynumber: 2.8 Consensus size: 94
49790179 TATACGTGCT
* * * * *
49790189 GATGCATGTCCTAGACATGTCTTACACTAGCA-TGAAACT-TA-GCCGATG-CATGTCCCAGACA
1 GATGCATGTCCAAGACACGTCTTACACTAGCACT-CACCTCAACGCCGATGCCATGTCCCAGACA
* *
49790250 CGTCTTACACTGGCTAACATCATCGAGGCC
65 TGTCTTACACGGGCTAACATCATCGAGGCC
* * * **
49790280 GATGCATGTCCAAGACATGTCTTACACTGGCACTCACCTCTACGCCGATGCCATGTCCCAGATGT
1 GATGCATGTCCAAGACACGTCTTACACTAGCACTCACCTCAACGCCGATGCCATGTCCCAGACAT
* * * *
49790345 GGTCTTACACGGGCTATCATGAT-GCGGCT
66 -GTCTTACACGGGCTAACATCATCGAGGCC
* * ** ** *
49790374 GATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCTCAATTCTGATGCCATGTCCCAGACAT
1 GATGCATGTCCAAGACACGTCTTACACTAGCACTCACCTCAACGCCGATGCCATGTCCCAGACAT
49790439 GATCTTA
66 G-TCTTA
49790446 TACTGGTTCT
Statistics
Matches: 136, Mismatches: 24, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
91 33 0.24
92 3 0.02
93 8 0.06
94 73 0.54
95 19 0.14
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (94 bp):
GATGCATGTCCAAGACACGTCTTACACTAGCACTCACCTCAACGCCGATGCCATGTCCCAGACAT
GTCTTACACGGGCTAACATCATCGAGGCC
Found at i:49791746 original size:15 final size:15
Alignment explanation
Indices: 49791714--49791742 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49791704 ATTTTCTATG
49791714 TTTACTATGTGTGAA
1 TTTACTATGTGTGAA
49791729 TTTA-TATGTGTGAA
1 TTTACTATGTGTGAA
49791743 ATTTTCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTACTATGTGTGAA
Found at i:49792905 original size:43 final size:42
Alignment explanation
Indices: 49792842--49792928 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 42
49792832 ATGTGTTTTT
* * *
49792842 GTGTAAGACCACATCTGGGACGTTGGCATCGATATCTGATTAC
1 GTGTAAGACCACATCTGGGACATCGACATCG-TATCTGATTAC
* *
49792885 GTGTAAGACCATAT-TAGGGACATCGACATCGTATTTGATTAC
1 GTGTAAGACCACATCT-GGGACATCGACATCGTATCTGATTAC
49792927 GT
1 GT
49792929 TGGCATTGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
42 13 0.34
43 25 0.66
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACATCTGGGACATCGACATCGTATCTGATTAC
Found at i:49794061 original size:26 final size:26
Alignment explanation
Indices: 49794032--49794082 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
49794022 ATTGAGTAGA
*
49794032 TAAAAATGCAAAATGAGTTATTGATG
1 TAAAAATACAAAATGAGTTATTGATG
49794058 TAAAAATACAAAATGAGTTATTGAT
1 TAAAAATACAAAATGAGTTATTGAT
49794083 TATGGAATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.49, C:0.04, G:0.16, T:0.31
Consensus pattern (26 bp):
TAAAAATACAAAATGAGTTATTGATG
Found at i:49797659 original size:45 final size:44
Alignment explanation
Indices: 49797527--49797704 Score: 155
Period size: 45 Copynumber: 4.0 Consensus size: 44
49797517 TAGGATTCTG
* * ** * *
49797527 ATATGTGATTTTGTGTAAAACCACATTTGGGACATTGGCATCGAT
1 ATATGTGA-TTCGTGTAAGACCATGTCTGGGACATTGACATCGAT
* * * *
49797572 ATATGTAATTTCGTGTAAGACCATGTTTGGGACGTTGGCATCGAT
1 ATATGTGA-TTCGTGTAAGACCATGTCTGGGACATTGACATCGAT
* * *
49797617 ATATGTGGTTACGTGTAAGACAATGTCTGGGACATCGACATCG-T
1 ATATGTGATT-CGTGTAAGACCATGTCTGGGACATTGACATCGAT
* * * *
49797661 AT-T-CGATTCGTGTAAGACCCTGTCTGGAACAGTGACATCGAT
1 ATATGTGATTCGTGTAAGACCATGTCTGGGACATTGACATCGAT
49797703 AT
1 AT
49797705 GAGATGGCAT
Statistics
Matches: 111, Mismatches: 20, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
41 27 0.24
42 6 0.05
43 1 0.01
44 5 0.05
45 72 0.65
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (44 bp):
ATATGTGATTCGTGTAAGACCATGTCTGGGACATTGACATCGAT
Found at i:49800333 original size:42 final size:43
Alignment explanation
Indices: 49800266--49800375 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 43
49800256 GATTTGAGAT
* * * * *
49800266 TTACATGTAAGACCATGTTTGGGACACCGACATCG-TATTTGA
1 TTACATGTAAGACCCTGTCTAGGACAACGACATCGAAATTTGA
* * * *
49800308 TTTCTTGTAAGACCCTGTCTAGGACAATGGCATCGAAATTTGA
1 TTACATGTAAGACCCTGTCTAGGACAACGACATCGAAATTTGA
49800351 TTACATGTAAGACCACT-TCTAGGAC
1 TTACATGTAAGACC-CTGTCTAGGAC
49800376 GTTGGTATTG
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 27 0.49
43 26 0.47
44 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTAGGACAACGACATCGAAATTTGA
Found at i:49805567 original size:40 final size:40
Alignment explanation
Indices: 49805523--49805711 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
49805513 GCTACTTGCT
49805523 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
49805563 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
49805603 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
49805643 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
49805683 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
49805712 CATCCGAATA
Statistics
Matches: 140, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 137 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:49805622 original size:80 final size:79
Alignment explanation
Indices: 49805490--49805711 Score: 331
Period size: 80 Copynumber: 2.8 Consensus size: 79
49805480 AAACCAAGTA
* * * *
49805490 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGTTATAG-TACTTGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
49805554 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
49805569 CCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGTTATAGT-ACTTGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
49805634 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
49805649 CCTTCGGGACTTAGCCCGGATT-TAGTCACTAGCACAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGG-TTATAGT-ACTTGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
49805712 CATCCGAATA
Statistics
Matches: 131, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
79 13 0.10
80 116 0.89
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGTTATAGTACTTGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:49808128 original size:28 final size:27
Alignment explanation
Indices: 49808071--49808219 Score: 226
Period size: 27 Copynumber: 5.4 Consensus size: 27
49808061 TAAATTGTGC
* *
49808071 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
49808098 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
49808126 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
49808153 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
49808181 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
49808208 AGCACTGAGTGT
1 AGCACTAAGTGT
49808220 ACGGACTTAA
Statistics
Matches: 115, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 63 0.55
28 52 0.45
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:49808136 original size:55 final size:55
Alignment explanation
Indices: 49808071--49808219 Score: 235
Period size: 55 Copynumber: 2.7 Consensus size: 55
49808061 TAAATTGTGC
* *
49808071 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
49808126 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
49808181 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGT
49808220 ACGGACTTAA
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 87 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:49812365 original size:25 final size:25
Alignment explanation
Indices: 49812337--49812386 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
49812327 TTTTTTAGAT
*
49812337 TCTCAAGGATACGTTGAGATGTTGC
1 TCTCAAGGATACATTGAGATGTTGC
*
49812362 TCTCGAGGATACATTGAGATGTTGC
1 TCTCAAGGATACATTGAGATGTTGC
49812387 ATTCTTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (25 bp):
TCTCAAGGATACATTGAGATGTTGC
Found at i:49814458 original size:42 final size:43
Alignment explanation
Indices: 49814350--49814483 Score: 114
Period size: 44 Copynumber: 3.1 Consensus size: 43
49814340 TTCCGATGTA
* * * *
49814350 TGATTTCGTGTAAGACCACGTTTGGGAC-GTTGGCATCGAT-TT
1 TGATTTTGTGTAAGACCATGTCTAGGACAG-TGGCATCGATATT
* ** *
49814392 GAGATTTACATGTAAGATCATGTCTAGGACA-TCGGCATCG-TATT
1 -TGATTT-TGTGTAAGACCATGTCTAGGACAGT-GGCATCGATATT
* *
49814436 TGATTTTGTGTAAGACCCTGTCTAGGATAGTGGCATCGATATT
1 TGATTTTGTGTAAGACCATGTCTAGGACAGTGGCATCGATATT
49814479 TGATT
1 TGATT
49814484 ACATGTAAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
42 25 0.34
43 22 0.30
44 26 0.36
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (43 bp):
TGATTTTGTGTAAGACCATGTCTAGGACAGTGGCATCGATATT
Found at i:49814493 original size:43 final size:42
Alignment explanation
Indices: 49814380--49814494 Score: 117
Period size: 42 Copynumber: 2.7 Consensus size: 42
49814370 TTTGGGACGT
* *
49814380 TGGCATCGAT-TTGAGATTTACATGTAAGATCATGTCTAGGACA
1 TGGCATCGATATT-TGA-TTACATGTAAGACCATGTCTAGGACA
*** * *
49814423 TCGGCATCG-TATTTGATTTTGTGTAAGACCCTGTCTAGGATA
1 T-GGCATCGATATTTGATTACATGTAAGACCATGTCTAGGACA
49814465 GTGGCATCGATATTTGATTACATGTAAGAC
1 -TGGCATCGATATTTGATTACATGTAAGAC
49814495 GACATCTGAG
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
42 27 0.47
43 22 0.38
44 9 0.16
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (42 bp):
TGGCATCGATATTTGATTACATGTAAGACCATGTCTAGGACA
Found at i:49819541 original size:10 final size:10
Alignment explanation
Indices: 49819523--49819556 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
49819513 AATGTTATCA
*
49819523 TAATAATATT
1 TAATTATATT
49819533 TAATTATATT
1 TAATTATATT
49819543 TAATTATAATT
1 TAATTAT-ATT
49819554 TAA
1 TAA
49819557 ACAAATATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 16 0.73
11 6 0.27
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TAATTATATT
Found at i:49822309 original size:30 final size:30
Alignment explanation
Indices: 49822273--49822334 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
49822263 AATCAGAAGT
*
49822273 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTATGCGATTTAAACTAGC
49822303 TTTGGCACTAAGTATGCGATTTAAACTAGC
1 TTTGGCACTAAGTATGCGATTTAAACTAGC
49822333 TT
1 TT
49822335 CGGCTACTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTATGCGATTTAAACTAGC
Found at i:49837890 original size:28 final size:29
Alignment explanation
Indices: 49837819--49837890 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
49837809 NNNNNNNNNN
*
49837819 AGCACTAAGTGTGCGAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATATA
49837848 AGCACTAAGTGTGCGAGTTTGATTATATA
1 AGCACTAAGTGTGCGAGTTTGATTATATA
49837877 A-CACTAAGTGTGCG
1 AGCACTAAGTGTGCG
49837891 GACTTACTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 13 0.31
29 29 0.69
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.32
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:49841980 original size:29 final size:28
Alignment explanation
Indices: 49841920--49841999 Score: 90
Period size: 28 Copynumber: 2.8 Consensus size: 28
49841910 CATACATGCT
* *
49841920 TATGGCCCATTAGGCTCAATCTCATTCA
1 TATGGCCCATTAGGCCCAATCACATTCA
49841948 TATGGCCCATTAGGCCCAAATCACA-TCTA
1 TATGGCCCATTAGGCCC-AATCACATTC-A
* * *
49841977 TATGGTCCACTCGGCCCAATCAC
1 TATGGCCCATTAGGCCCAATCAC
49842000 TTTTACAATC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 24 0.53
29 21 0.47
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (28 bp):
TATGGCCCATTAGGCCCAATCACATTCA
Found at i:49845933 original size:28 final size:28
Alignment explanation
Indices: 49845892--49845971 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 28
49845882 CATACATGCT
*
49845892 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
* *
49845920 TATGACCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
49845949 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
49845972 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 21 0.47
29 23 0.51
30 1 0.02
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.23
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:49845952 original size:29 final size:28
Alignment explanation
Indices: 49845892--49845971 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 28
49845882 CATACATGCT
*
49845892 TATGGCCCACTAGGCCCAATCTCATTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
* *
49845920 TATGACCCATTAGGCCCAAATCACA-TCTA
1 TATGGCCCACTAGGCCC-AATCACATTC-A
49845949 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
49845972 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 23 0.51
29 22 0.49
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.23
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:49854172 original size:45 final size:45
Alignment explanation
Indices: 49854076--49854172 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 45
49854066 AGATCCTGAT
* * *
49854076 TGAAAGACGTAATGGCATCACGATTTTATCGAGTAAGACAATGAC
1 TGAAAGACATAATGGCATCACGATTCTATCGAGTAACACAATGAC
* * * *
49854121 TAAAAGACATTATGGCATCACGATTCTATCGAGTTACACTAT-AGC
1 TGAAAGACATAATGGCATCACGATTCTATCGAGTAACACAATGA-C
49854166 TGAAAGA
1 TGAAAGA
49854173 TGCTATGGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (45 bp):
TGAAAGACATAATGGCATCACGATTCTATCGAGTAACACAATGAC
Found at i:49854267 original size:46 final size:45
Alignment explanation
Indices: 49854196--49854306 Score: 125
Period size: 46 Copynumber: 2.5 Consensus size: 45
49854186 TGAATCAAAC
* * *
49854196 AAATAAGGCCATGGTTGAAAAACACTATGGCAACATGATAGAAAAT
1 AAATAAGACCATGGTTGAAAAACACTACGGCAACAAGAT-GAAAAT
* * * * * *
49854242 GAATAAGACCAAGGTTGAGAGACACTACGGCATCAAGATGAGAAT
1 AAATAAGACCATGGTTGAAAAACACTACGGCAACAAGATGAAAAT
49854287 AAATAAGACCATGGTT-AAAA
1 AAATAAGACCATGGTTGAAAA
49854307 GATACCATGG
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
44 2 0.04
45 19 0.37
46 31 0.60
ACGTcount: A:0.47, C:0.14, G:0.22, T:0.18
Consensus pattern (45 bp):
AAATAAGACCATGGTTGAAAAACACTACGGCAACAAGATGAAAAT
Found at i:49855203 original size:20 final size:20
Alignment explanation
Indices: 49855178--49855251 Score: 139
Period size: 20 Copynumber: 3.7 Consensus size: 20
49855168 TATTTAAGCT
*
49855178 AAAGTAAGTAAATGCAATGA
1 AAAGTAAGTAAATGCAATGG
49855198 AAAGTAAGTAAATGCAATGG
1 AAAGTAAGTAAATGCAATGG
49855218 AAAGTAAGTAAATGCAATGG
1 AAAGTAAGTAAATGCAATGG
49855238 AAAGTAAGTAAATG
1 AAAGTAAGTAAATG
49855252 GAAGGGTTCA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.53, C:0.04, G:0.23, T:0.20
Consensus pattern (20 bp):
AAAGTAAGTAAATGCAATGG
Found at i:49859317 original size:21 final size:23
Alignment explanation
Indices: 49859293--49859335 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
49859283 GACCAAACAC
49859293 CACC-ACAGAT-ATATATATATA
1 CACCTACAGATAATATATATATA
**
49859314 CACCTTGAGATAATATATATAT
1 CACCTACAGATAATATATATAT
49859336 CATACCAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 4 0.22
23 10 0.56
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (23 bp):
CACCTACAGATAATATATATATA
Found at i:49861377 original size:21 final size:22
Alignment explanation
Indices: 49861347--49861387 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
49861337 ATCATTTTAC
* *
49861347 ATATATAACCTTTAT-TAATTA
1 ATATAAAACCATTATATAATTA
49861368 ATATAAAACCATTATATAAT
1 ATATAAAACCATTATATAAT
49861388 ATGGTCATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (22 bp):
ATATAAAACCATTATATAATTA
Found at i:49861563 original size:14 final size:15
Alignment explanation
Indices: 49861546--49861574 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49861536 TCATGAAAAT
49861546 TTCACACAT-ATAAA
1 TTCACACATAATAAA
49861560 TTCACACATAATAAA
1 TTCACACATAATAAA
49861575 CATATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:49864034 original size:28 final size:29
Alignment explanation
Indices: 49863997--49864142 Score: 143
Period size: 29 Copynumber: 5.1 Consensus size: 29
49863987 ACCCCTACAT
*
49863997 ACATGCATATGGCCCACTT-GGCCCAA-TC
1 ACATTCATATGGCCCA-TTAGGCCCAATTC
* *
49864025 TCATTTATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* * *
49864054 ACATTCATATGGCCTATCAGGCCCAATTT
1 ACATTCATATGGCCCATTAGGCCCAATTC
* * * *
49864083 ATATTCATATGACCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* * * *
49864112 AAATTTATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAATTC
49864141 AC
1 AC
49864143 CTTATATTCA
Statistics
Matches: 97, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
27 2 0.02
28 20 0.21
29 75 0.77
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAATTC
Found at i:49874874 original size:29 final size:29
Alignment explanation
Indices: 49874826--49874958 Score: 162
Period size: 29 Copynumber: 4.7 Consensus size: 29
49874816 GGCACACTTA
*
49874826 GCCC-AATCTCATTTATATGGCCCATCAG
1 GCCCAAATCACATTTATATGGCCCATCAG
*
49874854 GCCCAATTCACATTTATATGGCCCATCAG
1 GCCCAAATCACATTTATATGGCCCATCAG
* * * *
49874883 GCCCAATTCATATTCATATGGCCCATTAG
1 GCCCAAATCACATTTATATGGCCCATCAG
* * **
49874912 GCCCAAATCACCTTTATATGGCCCGTTGG
1 GCCCAAATCACATTTATATGGCCCATCAG
49874941 GCCCAAATCACA-TTATAT
1 GCCCAAATCACATTTATAT
49874959 TCATGCTCAC
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 10 0.11
29 82 0.89
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
GCCCAAATCACATTTATATGGCCCATCAG
Found at i:49878013 original size:48 final size:47
Alignment explanation
Indices: 49877956--49878226 Score: 253
Period size: 48 Copynumber: 5.7 Consensus size: 47
49877946 AATATTTGAA
* *
49877956 CCAGTGTAAGACCATGT-TTGGAGCATGGCATCAGCATTGTTGTGAGAG
1 CCAGTGTAAGACCATGTCTGGGA-CATGGCATC-GCATTGTTATGAGAG
* ** *
49878004 CTAGTGTAAGACCATGTCTGGGACATGGCAAT-G-ACTTCCATATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGC-ATCGCA-TT-GTTATGAGAG
* * ** * *
49878052 CCAGTGTAAGAACATGTTTGAAAGATGGTATCGCATTGTTATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGCATTGTTATGAGAG
* * *** **
49878099 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATCTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GCATTGTTATGAGAG
* * *
49878147 CCAGTGTAAGACCATGTTTGGAACATGGCA-CGACATTGTTATAAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCG-CATTGTTATGAGAG
49878194 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
49878227 ACATCTTACC
Statistics
Matches: 174, Mismatches: 40, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
46 2 0.01
47 74 0.43
48 91 0.52
49 7 0.04
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGCATTGTTATGAGAG
Found at i:49878103 original size:95 final size:95
Alignment explanation
Indices: 49877945--49878228 Score: 378
Period size: 95 Copynumber: 3.0 Consensus size: 95
49877935 GATACTAGGG
* * * *
49877945 CAATATTTGAACCAGTGTAAGACCATGTTTGGAGCATGGCATCAGCATTGTTGTGAGAGCTAGTG
1 CAATATCTGAGCCAGTGTAAGACCATGTTTGAAG-ATGGCATC-GCATTGTTATGAGAGCTAGTG
*
49878010 TAAGACCATGTCTGGGACATGGCAAT-GACTT
64 TAAGACCATGTCTGGGACATGGCAATCGACCT
* * * *
49878041 CCATATGTGAGCCAGTGTAAGAACATGTTTGAAAGATGGTATCGCATTGTTATGAGAGCTAGTGT
1 CAATATCTGAGCCAGTGTAAGACCATGTTTG-AAGATGGCATCGCATTGTTATGAGAGCTAGTGT
*
49878106 AAGACCATGTCTGGGACATGGC-ATCGGCCT
65 AAGACCATGTCTGGGACATGGCAATCGACCT
* * *
49878136 CAATATCTGAGCCAGTGTAAGACCATGTTTGGAACATGGCA-CGACATTGTTATAAGAGCCAGTG
1 CAATATCTGAGCCAGTGTAAGACCATGTTT-GAAGATGGCATCG-CATTGTTATGAGAGCTAGTG
49878200 TAAGACCATGTCTGGGACATGGC-ATCGAC
64 TAAGACCATGTCTGGGACATGGCAATCGAC
49878229 ATCTTACCCT
Statistics
Matches: 167, Mismatches: 17, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
94 4 0.02
95 126 0.75
96 35 0.21
97 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (95 bp):
CAATATCTGAGCCAGTGTAAGACCATGTTTGAAGATGGCATCGCATTGTTATGAGAGCTAGTGTA
AGACCATGTCTGGGACATGGCAATCGACCT
Found at i:49880169 original size:16 final size:17
Alignment explanation
Indices: 49880148--49880186 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
49880138 AGTGTAATGC
*
49880148 CCCAAAAATCTCGAAA-
1 CCCAAAAATCCCGAAAT
49880164 CCCAAAAATCCCGAAAT
1 CCCAAAAATCCCGAAAT
49880181 CCCAAA
1 CCCAAA
49880187 CTTTCTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:49882212 original size:40 final size:40
Alignment explanation
Indices: 49882118--49882262 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
49882108 TACTCGAATG
* *
49882118 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGCGACT
* *
49882159 ACATCCGGACTAAGAT-CCGAAGGCATTTATGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGCGACT
* *
49882199 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
* *
49882239 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
49882263 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 27 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
Found at i:49889028 original size:9 final size:9
Alignment explanation
Indices: 49889014--49889048 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
49889004 CAAAAAAATC
49889014 AGTCAAAAA
1 AGTCAAAAA
49889023 AGTCAAAAA
1 AGTCAAAAA
*
49889032 AATCAAAAA
1 AGTCAAAAA
*
49889041 AGACAAAA
1 AGTCAAAA
49889049 TTCAATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.71, C:0.11, G:0.09, T:0.09
Consensus pattern (9 bp):
AGTCAAAAA
Found at i:49891732 original size:23 final size:23
Alignment explanation
Indices: 49891702--49891749 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
49891692 TTAGAAAATT
49891702 TGTATGTGAGCATGAGTATAATA
1 TGTATGTGAGCATGAGTATAATA
49891725 TGTATGTGAGCATGAGTATAATA
1 TGTATGTGAGCATGAGTATAATA
49891748 TG
1 TG
49891750 ATTTGGGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.35
Consensus pattern (23 bp):
TGTATGTGAGCATGAGTATAATA
Found at i:49896251 original size:29 final size:28
Alignment explanation
Indices: 49896189--49896295 Score: 92
Period size: 29 Copynumber: 3.8 Consensus size: 28
49896179 ATAATATGAT
* **
49896189 TTGGGCCTAATGGGCCATATGAAGGTGAA
1 TTGGGCCTAGTGGGCCATATGAATAT-AA
*
49896218 TTGGGCCTAGTGGGCCATAAGAATATTAA
1 TTGGGCCTAGTGGGCCATATGAATA-TAA
* * *
49896247 CTGGG-TTAGATGGGCCATTTGAATA-AGA
1 TTGGGCCTAG-TGGGCCATATGAATATA-A
*
49896275 TTGGGCCTAGTGGGCTATATG
1 TTGGGCCTAGTGGGCCATATG
49896296 CATGTATGTA
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
27 1 0.02
28 17 0.27
29 43 0.69
30 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.33, T:0.28
Consensus pattern (28 bp):
TTGGGCCTAGTGGGCCATATGAATATAA
Found at i:49897378 original size:17 final size:18
Alignment explanation
Indices: 49897346--49897379 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49897336 TTTAAGAAGG
49897346 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
49897364 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
49897380 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:49899809 original size:40 final size:40
Alignment explanation
Indices: 49899751--49899833 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
49899741 TTAGAAGCCT
* **
49899751 TTTAGGCTTAGCTGGATACTACAGACGTTTTGTTAAAGGA
1 TTTAGGCTTAGCTAGATACTACAGACAATTTGTTAAAGGA
49899791 TTTAGGCTTAG-TCAGATACTACAGACAATTTGTTAAAGGA
1 TTTAGGCTTAGCT-AGATACTACAGACAATTTGTTAAAGGA
49899831 TTT
1 TTT
49899834 TCCATGATTG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
39 1 0.03
40 38 0.97
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (40 bp):
TTTAGGCTTAGCTAGATACTACAGACAATTTGTTAAAGGA
Found at i:49903140 original size:20 final size:20
Alignment explanation
Indices: 49903107--49903145 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
49903097 ACTAATTGTG
*
49903107 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
49903127 CATGTGATGGTTAAATGTT
1 CATGTGATGCTTAAATGTT
49903146 CTATATCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:49904723 original size:17 final size:16
Alignment explanation
Indices: 49904681--49904715 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
49904671 TCCAAGCTGA
49904681 GTTTAAAAAGAAGTAT
1 GTTTAAAAAGAAGTAT
49904697 GTTTAAAAAGAAGTAT
1 GTTTAAAAAGAAGTAT
49904713 GTT
1 GTT
49904716 AGTAAAAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.20, T:0.34
Consensus pattern (16 bp):
GTTTAAAAAGAAGTAT
Found at i:49910962 original size:20 final size:20
Alignment explanation
Indices: 49910929--49910967 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
49910919 ACTAATTGTG
*
49910929 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
49910949 CATGTGATGGTTAAATGTT
1 CATGTGATGCTTAAATGTT
49910968 GTATATCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:49913681 original size:48 final size:48
Alignment explanation
Indices: 49913593--49913872 Score: 265
Period size: 48 Copynumber: 5.9 Consensus size: 48
49913583 ACTAGGGCAA
* * * * *
49913593 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGTCATCGGTATTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
* * * * * ***
49913641 TATGAGAGCTAGTGTAAGACCATGTCTGGGATATAGCATCGGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
* *
49913689 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
** * * * ** ** * ***
49913737 TATGAGAGATAGGGTAAGACCAT-CCAGCTACATGGCATCAACGTCAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
* * *
49913784 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGGATTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
*
49913832 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCG
49913873 ACATCTTACC
Statistics
Matches: 176, Mismatches: 55, Indels: 2
0.76 0.24 0.01
Matches are distributed among these distances:
47 32 0.18
48 144 0.82
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
Found at i:49913754 original size:96 final size:96
Alignment explanation
Indices: 49913590--49913874 Score: 419
Period size: 96 Copynumber: 3.0 Consensus size: 96
49913580 GATACTAGGG
* * *
49913590 CAATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGTCATCGGTATTGTTATGAGAGCTAGTG
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
* * *
49913655 TAAGACCATGTCTGGGATATAGCATCGGCCT
66 TAAGACCATGTCTGGGACATGGCATCGACCT
* *
49913686 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGATAGGG
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
* * ** * *
49913751 TAAGACCAT-CCAGCTACATGGCATCAACGT
66 TAAGACCATGTCTGGGACATGGCATCGACCT
* *
49913781 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGGATTGTTATGAGAGCCAGTG
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
49913846 TAAGACCATGTCTGGGACATGGCATCGAC
66 TAAGACCATGTCTGGGACATGGCATCGAC
49913875 ATCTTACCCT
Statistics
Matches: 165, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
95 82 0.50
96 83 0.50
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
TAAGACCATGTCTGGGACATGGCATCGACCT
Found at i:49913819 original size:95 final size:96
Alignment explanation
Indices: 49913590--49913855 Score: 381
Period size: 95 Copynumber: 2.8 Consensus size: 96
49913580 GATACTAGGG
* * *
49913590 CAATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGTCATCGGTATTGTTATGAGAGCTAGTG
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
* * * * **
49913655 TAAGACCATGTCTGGGATATAGCATCGGCCT
66 TAAGACCATGCCAGCGACATAGCATCAACCT
* *
49913686 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGATAGGG
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
* * *
49913751 TAAGACCAT-CCAGCTACATGGCATCAACGT
66 TAAGACCATGCCAGCGACATAGCATCAACCT
* *
49913781 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGGATTGTTATGAGAGCCAGTG
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
49913846 TAAGACCATG
66 TAAGACCATG
49913856 TCTGGGACAT
Statistics
Matches: 151, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
95 82 0.54
96 69 0.46
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (96 bp):
CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
TAAGACCATGCCAGCGACATAGCATCAACCT
Found at i:49935407 original size:63 final size:63
Alignment explanation
Indices: 49935329--49935453 Score: 223
Period size: 63 Copynumber: 2.0 Consensus size: 63
49935319 GTTATAGTAT
*
49935329 GTAATATATTAGTTAAGTAATATGCATGCCATATATGTGTGGTGTGCTTGGTATATGCTTACA
1 GTAATATATTAGTTAAGTAATATGCATGCCATATATATGTGGTGTGCTTGGTATATGCTTACA
* *
49935392 GTAATATATTAGTTAAGTAATATGCATGTCATATATATGTGGTGTGCTTGTTATATGCTTAC
1 GTAATATATTAGTTAAGTAATATGCATGCCATATATATGTGGTGTGCTTGGTATATGCTTAC
49935454 GGTTTAAAGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (63 bp):
GTAATATATTAGTTAAGTAATATGCATGCCATATATATGTGGTGTGCTTGGTATATGCTTACA
Found at i:49936440 original size:40 final size:42
Alignment explanation
Indices: 49936362--49936440 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
49936352 ACAGGGGTTT
*
49936362 TCACACGGCCTGACACATGCTCGTGTCTATAGCCCGTGTTCC
1 TCACACGGCCTGACACATCCTCGTGTCTATAGCCCGTGTTCC
*
49936404 TCACACGGCCATGACACA-CCT-GTGTC-CTAGCCCGTGT
1 TCACACGGCC-TGACACATCCTCGTGTCTATAGCCCGTGT
49936441 CTAAAAACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 10 0.29
41 5 0.15
42 12 0.35
43 7 0.21
ACGTcount: A:0.18, C:0.37, G:0.22, T:0.24
Consensus pattern (42 bp):
TCACACGGCCTGACACATCCTCGTGTCTATAGCCCGTGTTCC
Found at i:49937645 original size:46 final size:46
Alignment explanation
Indices: 49937504--49937778 Score: 161
Period size: 46 Copynumber: 5.8 Consensus size: 46
49937494 ACTATCGAAA
* * *
49937504 TCGAGGCCGACGTCATGTCCCAGACATGGTCTTACACTAGCTCTCACATA
1 TCGAGGCCGATG-CATGTCCAAGACAT-GTCTTACACTAGCT-T-ACATC
* *
49937554 TCCG-TGCCGATGCCATGTCCTAGACATGGTCTTACACT-GAC--ACATC
1 T-CGAGGCCGATG-CATGTCCAAGACAT-GTCTTACACTAG-CTTACATC
*** *
49937600 TCG-GAGCCGATGCATGTGTGAGATATGTCTTACACTAGCTTACATC
1 TCGAG-GCCGATGCATGTCCAAGACATGTCTTACACTAGCTTACATC
* * *
49937646 TCGAGGTCGATGCATGTCCAAGACATGTCTTACACTAACTCT-CTTC
1 TCGAGGCCGATGCATGTCCAAGACATGTCTTACACTAGCT-TACATC
* * ** * * *
49937692 TCAATGATGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAA
1 TCGAGGCCGATG-CATGTCCAAGACAT-GTCTTACACTAGCT-TACAT-C
* * * *
49937741 T-GTGGCCGATGCATGACCTAGACATGTGTTACACTAGC
1 TCGAGGCCGATGCATGTCCAAGACATGTCTTACACTAGC
49937779 ACACAAATAA
Statistics
Matches: 179, Mismatches: 35, Indels: 26
0.75 0.15 0.11
Matches are distributed among these distances:
44 11 0.06
45 13 0.07
46 71 0.40
47 27 0.15
48 21 0.12
49 2 0.01
50 32 0.18
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
TCGAGGCCGATGCATGTCCAAGACATGTCTTACACTAGCTTACATC
Found at i:49943982 original size:21 final size:20
Alignment explanation
Indices: 49943944--49943983 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
49943934 CACTTGAAGC
*
49943944 AGGGCACATGCCCGTGTGGA
1 AGGGCACATGCCCATGTGGA
*
49943964 AGGGCAACATGCTCATGTGG
1 AGGGC-ACATGCCCATGTGG
49943984 CCATTATGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.17
Consensus pattern (20 bp):
AGGGCACATGCCCATGTGGA
Found at i:49944487 original size:22 final size:22
Alignment explanation
Indices: 49944460--49944506 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
49944450 ACAACATAAC
49944460 AACAACCAATGTATCAAAGTTT
1 AACAACCAATGTATCAAAGTTT
49944482 AACAACCAATGTATCAAAGTTT
1 AACAACCAATGTATCAAAGTTT
49944504 AAC
1 AAC
49944507 TTAATATGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.26
Consensus pattern (22 bp):
AACAACCAATGTATCAAAGTTT
Found at i:49945299 original size:46 final size:47
Alignment explanation
Indices: 49945171--49945339 Score: 145
Period size: 46 Copynumber: 3.6 Consensus size: 47
49945161 AGGCCGACGC
* * *
49945171 CATGTCCCAGACATGGTCTTACACTAGCTTTCACATATTCAT-GCTGATGC
1 CATGTCCCAGACATGGTCTTACACTAGC-TT-ACAT-CTCGTAGCTGAT-A
* *
49945221 CATGTCCCAAACGTGGTCTTACACT-GAC--ACATCTCGTAGCTGATA
1 CATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCGTAGCTGATA
* * *
49945266 CATGTCCCAGATAT-GTCTTACACTAGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTA-GCTGATA
* *
49945312 CAAGTCCCAGACAT-GTCTTACATTAGCT
1 CATGTCCCAGACATGGTCTTACACTAGCT
49945340 CTCGTCTCAA
Statistics
Matches: 100, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
44 11 0.11
45 16 0.16
46 48 0.48
49 1 0.01
50 24 0.24
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGTAGCTGATA
Found at i:49945356 original size:46 final size:47
Alignment explanation
Indices: 49945269--49945379 Score: 127
Period size: 46 Copynumber: 2.4 Consensus size: 47
49945259 GCTGATACAT
* * *
49945269 GTCCCAGATATGTCTTACACTAGCTTACATCTCGAGGCCGATG-CAA
1 GTCCCAGACATGTCTTACACTAGCTTACATCTCAAGACCGATGCCAA
* * * *
49945315 GTCCCAGACATGTCTTACATTAGCTCT-CGTCTCAATACCGATGCCAT
1 GTCCCAGACATGTCTTACACTAGCT-TACATCTCAAGACCGATGCCAA
49945362 GTCCCAGACATAGTCTTA
1 GTCCCAGACAT-GTCTTA
49945380 TCTGGCACTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 35 0.64
47 14 0.25
48 6 0.11
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
GTCCCAGACATGTCTTACACTAGCTTACATCTCAAGACCGATGCCAA
Found at i:49957560 original size:8 final size:8
Alignment explanation
Indices: 49957547--49957578 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
49957537 CTAGATCGGC
49957547 AAAAGCCG
1 AAAAGCCG
49957555 AAAAGCCG
1 AAAAGCCG
*
49957563 AAATGCCG
1 AAAAGCCG
49957571 AAAAGCCG
1 AAAAGCCG
49957579 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:49958010 original size:28 final size:27
Alignment explanation
Indices: 49957969--49958042 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
49957959 AGGAAGCGTC
49957969 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
49957997 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
49958024 TTGGTGGCACTGCCACAAA
1 CTGGTGGCACTGCCACAAA
49958043 ATATGTGACA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:49958980 original size:29 final size:28
Alignment explanation
Indices: 49958947--49959016 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 28
49958937 TTGGAGATTG
*
49958947 GCACTAAGTGTGCCAGTTCAAAT-TATATA
1 GCACTAAGTGTGCCAGTTCAACTAT-TA-A
* * *
49958976 GCACTAAGTGTACGAGTTCGACTATTAA
1 GCACTAAGTGTGCCAGTTCAACTATTAA
49959004 GCACTAAGTGTGC
1 GCACTAAGTGTGC
49959017 GGGCTTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 13 0.37
29 21 0.60
30 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCCAGTTCAACTATTAA
Found at i:49966662 original size:29 final size:28
Alignment explanation
Indices: 49966620--49966692 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 28
49966610 CATGAGATTG
*
49966620 GCACTAAGTGTGCGGGTTCAAAT-TATATA
1 GCACTAAGTGTGCGGGTTCAACTAT-TA-A
* *
49966649 GCACTAAGTGTGCGAGTTCGACTATTAA
1 GCACTAAGTGTGCGGGTTCAACTATTAA
49966677 GCACTAAGTGTGCGGG
1 GCACTAAGTGTGCGGG
49966693 CTTATTATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 16 0.41
29 22 0.56
30 1 0.03
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (28 bp):
GCACTAAGTGTGCGGGTTCAACTATTAA
Found at i:49966688 original size:28 final size:29
Alignment explanation
Indices: 49966620--49966690 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
49966610 CATGAGATTG
*
49966620 GCACTAAGTGTGCGGGTTCAAATTATATA
1 GCACTAAGTGTGCGAGTTCAAATTATATA
* *
49966649 GCACTAAGTGTGCGAGTTC-GACTAT-TAA
1 GCACTAAGTGTGCGAGTTCAAATTATAT-A
49966677 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49966691 GGCTTATTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 19 0.50
29 18 0.47
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCAAATTATATA
Found at i:49968133 original size:19 final size:19
Alignment explanation
Indices: 49968109--49968147 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
49968099 TTTTAATTAT
* *
49968109 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
49968128 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
49968147 T
1 T
49968148 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:49968760 original size:11 final size:10
Alignment explanation
Indices: 49968732--49968765 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
49968722 AGCCTGTAAG
49968732 TATTCTGAAT
1 TATTCTGAAT
*
49968742 TTTTCTGAAT
1 TATTCTGAAT
49968752 ATATTCTGAAT
1 -TATTCTGAAT
49968763 TAT
1 TAT
49968766 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:49975433 original size:28 final size:27
Alignment explanation
Indices: 49975392--49975481 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 27
49975382 AGGAAGCGTC
*
49975392 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
49975420 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
49975447 CTTGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
49975476 CTGGTG
1 CTGGTG
49975482 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 21 0.42
28 23 0.46
29 6 0.12
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:49975969 original size:19 final size:19
Alignment explanation
Indices: 49975945--49975983 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
49975935 TTTTAATTAT
* *
49975945 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
49975964 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
49975983 T
1 T
49975984 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:49981149 original size:57 final size:56
Alignment explanation
Indices: 49981073--49981210 Score: 195
Period size: 57 Copynumber: 2.4 Consensus size: 56
49981063 TCCCAGACAA
* *
49981073 GGTCTTACTCGCACACATATATCGGAGTCACATATTGATGCCAACGTATCAAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTAT-AAAACAT
* * * ** *
49981130 TGTCTTACACGTACACATATATAAAAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
49981186 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
49981211 TGCCGTGGTC
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
56 26 0.38
57 42 0.62
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
Found at i:49991241 original size:65 final size:65
Alignment explanation
Indices: 49991137--49991265 Score: 240
Period size: 65 Copynumber: 2.0 Consensus size: 65
49991127 CATCAAGTTT
*
49991137 CGACAAGTATCCATTGTGCGAGCATCTTTTCTACCTATCGTTTGGTCTTCGGGTAAGTGTTCTTC
1 CGACAAGTATCCATTGTGCGAGCATCTTTTCTACCTATCGTTTGGTCTTCGGGTAAGTGCTCTTC
*
49991202 CGACAAGTATCCATTGTGCGAGCATCTTTTCTACCTATCGTTTGGTCTTGGGGTAAGTGCTCTT
1 CGACAAGTATCCATTGTGCGAGCATCTTTTCTACCTATCGTTTGGTCTTCGGGTAAGTGCTCTT
49991266 TCTTATGCCT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (65 bp):
CGACAAGTATCCATTGTGCGAGCATCTTTTCTACCTATCGTTTGGTCTTCGGGTAAGTGCTCTTC
Found at i:49995507 original size:13 final size:15
Alignment explanation
Indices: 49995478--49995513 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
49995468 ATAATAAAAT
49995478 ATATATTTATATTTA
1 ATATATTTATATTTA
49995493 ATA-ATTTAT-TTTA
1 ATATATTTATATTTA
49995506 ATATATTT
1 ATATATTT
49995514 CATTAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 7 0.35
14 10 0.50
15 3 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATATATTTATATTTA
Found at i:49997597 original size:27 final size:27
Alignment explanation
Indices: 49997578--49997824 Score: 289
Period size: 27 Copynumber: 9.2 Consensus size: 27
49997568 ATTACCAAAG
* *
49997578 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
49997605 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
49997632 TACCCTCAATTTAGAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
**
49997659 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
49997686 TACCCTCGATTTATA-AATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
49997712 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
**
49997739 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
49997766 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
49997793 TACCATTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
49997820 AACCC
1 TACCC
49997825 CTAGGGTGTT
Statistics
Matches: 189, Mismatches: 30, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 23 0.12
27 166 0.88
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:49997740 original size:107 final size:107
Alignment explanation
Indices: 49997551--49997824 Score: 316
Period size: 107 Copynumber: 2.5 Consensus size: 107
49997541 ATTACTGAAA
* ** *** * * *
49997551 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATA-AATTACCATTTTACCCTCGATT
* * *
49997616 TATAGAATTACTATTTTACCCTCAATTTAGAAAATTA-TCATTT
65 TACAAAATTACTATTTTACCCTCAATTTACAAAATTACT-ATTT
* **
49997659 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAATTACCATTTTACCCTCGATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAATTACCATTTTACCCTCGATTT
* * *
49997724 ACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
66 ACAAAATTACTATTTTACCCTCAATTTACAAAATTACTATTT
* * * *
49997766 TACCCTTGATTTACAAAATTACCATTTTACCATTGATTTATAAAATTACCATTTAACCC
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTAT-AAATTACCATTTTACCC
49997825 CTAGGGTGTT
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
107 90 0.65
108 49 0.35
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (107 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAATTACCATTTTACCCTCGATTT
ACAAAATTACTATTTTACCCTCAATTTACAAAATTACTATTT
Found at i:49998104 original size:27 final size:26
Alignment explanation
Indices: 49998060--49998111 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
49998050 CTCGCTGCAA
*
49998060 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
49998087 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
49998112 GTAGCCTCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:49998361 original size:31 final size:31
Alignment explanation
Indices: 49998346--49998405 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
49998336 CGATTTTGTT
49998346 ACCTGATACAGATTCTGATTGTAATTCTGTC
1 ACCTGATACAGATTCTGATTGTAATTCTGTC
* * * *
49998377 ACCTGATTCTGATTCTGATTCTGATTCTG
1 ACCTGATACAGATTCTGATTGTAATTCTG
49998406 ATTCTGTCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.42
Consensus pattern (31 bp):
ACCTGATACAGATTCTGATTGTAATTCTGTC
Found at i:49998390 original size:6 final size:6
Alignment explanation
Indices: 49998379--49998456 Score: 88
Period size: 6 Copynumber: 12.8 Consensus size: 6
49998369 ATTCTGTCAC
49998379 CTGATT CTGATT CTGATT CTGATT CTGATT CTG-TCT CCTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGAT-T -CTGATT CTGATT
* * *
49998428 CTAATT CTCATT TTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGA-TT CTGAT
49998457 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
5 2 0.03
6 54 0.87
7 5 0.08
8 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (6 bp):
CTGATT
Found at i:49998398 original size:37 final size:37
Alignment explanation
Indices: 49998356--49998435 Score: 124
Period size: 37 Copynumber: 2.2 Consensus size: 37
49998346 ACCTGATACA
*
49998356 GATTCTGATTGTAATTCTGTCACCTGATTCTGATTCT
1 GATTCTGATTCTAATTCTGTCACCTGATTCTGATTCT
* *
49998393 GATTCTGATTCTGATTCTGTCTCCTGATTCTGATTCT
1 GATTCTGATTCTAATTCTGTCACCTGATTCTGATTCT
*
49998430 AATTCT
1 GATTCT
49998436 CATTTTGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.47
Consensus pattern (37 bp):
GATTCTGATTCTAATTCTGTCACCTGATTCTGATTCT
Found at i:49998445 original size:37 final size:37
Alignment explanation
Indices: 49998369--49998447 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49998359 TCTGATTGTA
* *
49998369 ATTCTGTCACCTGATTCTGATTCTGATTCTGATTCTG
1 ATTCTGTCACCTGATTCTGATTCTAATTCTCATTCTG
* *
49998406 ATTCTGTCTCCTGATTCTGATTCTAATTCTCATTTTG
1 ATTCTGTCACCTGATTCTGATTCTAATTCTCATTCTG
49998443 ATTCT
1 ATTCT
49998448 AGTTCTGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.16, C:0.22, G:0.13, T:0.49
Consensus pattern (37 bp):
ATTCTGTCACCTGATTCTGATTCTAATTCTCATTCTG
Found at i:50006906 original size:22 final size:22
Alignment explanation
Indices: 50006861--50006907 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
50006851 TGAAATTATT
* *
50006861 TATGACTAAAGTATAGCGTTCA
1 TATGACTAAAGAATAGCGTGCA
50006883 TATGACTAAATGAATAGC-TGCA
1 TATGACTAAA-GAATAGCGTGCA
50006905 TAT
1 TAT
50006908 ACGCATATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (22 bp):
TATGACTAAAGAATAGCGTGCA
Found at i:50007208 original size:40 final size:40
Alignment explanation
Indices: 50007134--50007355 Score: 333
Period size: 40 Copynumber: 5.6 Consensus size: 40
50007124 AACCCAAGTA
* *
50007134 CCTTCGGGATTTAG-CCGTG-TATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCG-GATATAGTCAA-TAGCACAAATG
* *
50007173 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
50007213 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
50007253 CCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
50007293 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
50007333 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
50007356 CATTCGAATA
Statistics
Matches: 168, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 13 0.08
40 152 0.90
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:50009712 original size:7 final size:7
Alignment explanation
Indices: 50009700--50009774 Score: 105
Period size: 7 Copynumber: 10.6 Consensus size: 7
50009690 ACTGAGTTTG
50009700 TAAACCC
1 TAAACCC
50009707 TAAACCC
1 TAAACCC
*
50009714 TAAACAC
1 TAAACCC
*
50009721 TAAACCA
1 TAAACCC
50009728 TAAACCC
1 TAAACCC
50009735 TAAACCC
1 TAAACCC
* *
50009742 TAATCCA
1 TAAACCC
50009749 TAAACCC
1 TAAACCC
50009756 TAAAACCC
1 T-AAACCC
50009764 TAAACCC
1 TAAACCC
50009771 TAAA
1 TAAA
50009775 ACCTTATTCG
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
7 52 0.88
8 7 0.12
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:50014123 original size:36 final size:36
Alignment explanation
Indices: 50014076--50014147 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
50014066 CCTTAGAAAA
50014076 GAATGCATGAAAATTAAATAGGTTGCTCTAATGACC
1 GAATGCATGAAAATTAAATAGGTTGCTCTAATGACC
50014112 GAATGCATGAAAATTAAATAGGTTGCTCTAATGACC
1 GAATGCATGAAAATTAAATAGGTTGCTCTAATGACC
50014148 AAATATGCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (36 bp):
GAATGCATGAAAATTAAATAGGTTGCTCTAATGACC
Found at i:50014949 original size:43 final size:43
Alignment explanation
Indices: 50014875--50015040 Score: 214
Period size: 43 Copynumber: 3.9 Consensus size: 43
50014865 CGTATGATGA
*
50014875 ATTAGGGCCTCGAGCCTAGCAGGCTAT-ATGCCAGTGAAATAAT
1 ATTA-GGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAAT
*
50014918 ATTAGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAAT
1 ATTAGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAAT
* *
50014961 A-TCGAGCCTCGAGCCTAGCAGGCTATAATGCTGGTGAAATAAT
1 ATTAG-GCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAAT
** *
50015004 ATCGGGCTTCGAGCCTAGCAGG-TGA-AATGCCGGTGAA
1 ATTAGGCCTCGAGCCTAGCAGGCT-ATAATGCCGGTGAA
50015041 TGAATTCAGA
Statistics
Matches: 110, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
42 35 0.32
43 74 0.67
44 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (43 bp):
ATTAGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAAT
Found at i:50015036 original size:85 final size:85
Alignment explanation
Indices: 50014881--50015040 Score: 252
Period size: 86 Copynumber: 1.9 Consensus size: 85
50014871 ATGAATTAGG
*
50014881 GCCTCGAGCCTAGCAGGCTATATGCCAGTGAAATAATATTAGGCTTCGAGCCTAGCAGGCTATAA
1 GCCTCGAGCCTAGCAGGCTATATGCCAGTGAAATAATATCAGGCTTCGAGCCTAGCAGGCTATAA
50014946 TGCCGGTGAAATAATATCGA
66 TGCCGGTGAAATAATATCGA
** *
50014966 GCCTCGAGCCTAGCAGGCTATAATGCTGGTGAAATAATATCGGGCTTCGAGCCTAGCAGG-TGA-
1 GCCTCGAGCCTAGCAGGCTAT-ATGCCAGTGAAATAATATCAGGCTTCGAGCCTAGCAGGCT-AT
50015029 AATGCCGGTGAA
64 AATGCCGGTGAA
50015041 TGAATTCAGA
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
85 34 0.49
86 35 0.51
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (85 bp):
GCCTCGAGCCTAGCAGGCTATATGCCAGTGAAATAATATCAGGCTTCGAGCCTAGCAGGCTATAA
TGCCGGTGAAATAATATCGA
Found at i:50021018 original size:37 final size:37
Alignment explanation
Indices: 50020977--50021050 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
50020967 CGATTTTGAA
50020977 AGAGTGTTATGACTATAAATGTGATCTTTGTATGTGG
1 AGAGTGTTATGACTATAAATGTGATCTTTGTATGTGG
50021014 AGAGTGTTATGACTATAAATGTGATCTTTGTATGTGG
1 AGAGTGTTATGACTATAAATGTGATCTTTGTATGTGG
50021051 CTATGGAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.05, G:0.27, T:0.41
Consensus pattern (37 bp):
AGAGTGTTATGACTATAAATGTGATCTTTGTATGTGG
Found at i:50021222 original size:40 final size:40
Alignment explanation
Indices: 50021167--50021527 Score: 542
Period size: 40 Copynumber: 9.0 Consensus size: 40
50021157 GAGTTATATA
*
50021167 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
50021207 TATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
50021247 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
50021287 TATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
50021327 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
50021367 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
50021407 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
50021447 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * * *
50021487 CATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
50021527 T
1 T
50021528 GTAATCAGGC
Statistics
Matches: 285, Mismatches: 36, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 285 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
Found at i:50021298 original size:80 final size:80
Alignment explanation
Indices: 50021165--50021527 Score: 645
Period size: 80 Copynumber: 4.5 Consensus size: 80
50021155 GAGAGTTATA
50021165 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAG
50021230 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
50021245 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAG
50021310 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
*
50021325 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAG
50021390 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
* * *
50021405 TATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTACCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAG
50021470 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
* * * **
50021485 TACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
50021528 GTAATCAGGC
Statistics
Matches: 274, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 274 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAG
CATTCGTGCTGGTGT
Found at i:50021726 original size:25 final size:25
Alignment explanation
Indices: 50021687--50021741 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
50021677 TGTGTAATAA
50021687 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
50021712 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
50021737 CGAAT
1 CGAAT
50021742 TCTTTAACTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:50022470 original size:136 final size:135
Alignment explanation
Indices: 50022226--50022497 Score: 411
Period size: 136 Copynumber: 2.0 Consensus size: 135
50022216 TGGGGGAGAG
* * *
50022226 TTGTGACAGCCCTAAATTGACCCTAGTCGGGAAGCGGTTTCGGGACCGCTAAATCGAGTCACCTA
1 TTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGCGGTTTCGGGACCGCTAAACCGAGTCACCGA
* * *
50022291 AGTATTTGAATATGATATATATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTAAGCTT
66 AATATTTGAATATGATATATATTGTCTAAAATATGTGAATATGAATGTGTGAAAATTTCAAGCTT
50022356 CGATT
131 CGATT
* *
50022361 TTGTGACAGCCCAAAATTGACCCTAGTTGGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCG
1 TTGTGACAGCCCAAAATTGACCCTAG-TCGGGAAGCGGTTTCGGGACCGCTAAACCGAGTCACCG
* * * *
50022426 AAATGTTTGAATGTGATATTTATTGTCTAGAATATGT-AATTATGAATGTGTGAAAATTTCAAGC
65 AAATATTTGAATATGATATATATTGTCTAAAATATGTGAA-TATGAATGTGTGAAAATTTCAAGC
50022490 TTCGATT
129 TTCGATT
50022497 T
1 T
50022498 AGTCGATTGC
Statistics
Matches: 123, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
135 27 0.22
136 96 0.78
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (135 bp):
TTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGCGGTTTCGGGACCGCTAAACCGAGTCACCGA
AATATTTGAATATGATATATATTGTCTAAAATATGTGAATATGAATGTGTGAAAATTTCAAGCTT
CGATT
Found at i:50027336 original size:25 final size:25
Alignment explanation
Indices: 50027308--50027386 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
50027298 CTAATGGCCG
50027308 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
50027333 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
50027355 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
50027380 ATGTGAT
1 ATGTGAT
50027387 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:50027447 original size:49 final size:49
Alignment explanation
Indices: 50027292--50027679 Score: 614
Period size: 49 Copynumber: 8.1 Consensus size: 49
50027282 GAAATGATAG
50027292 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
50027339 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
50027386 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
50027435 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
50027484 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
50027533 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
50027580 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * *
50027629 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
50027676 TAAG
1 TAAG
50027680 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 11, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
47 134 0.41
48 8 0.02
49 182 0.56
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:50027467 original size:96 final size:96
Alignment explanation
Indices: 50027292--50027679 Score: 645
Period size: 96 Copynumber: 4.0 Consensus size: 96
50027282 GAAATGATAG
*
50027292 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
50027355 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
50027386 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
50027451 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
50027484 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
50027549 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
50027580 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCTGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
* * *
50027645 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
50027676 TAAG
1 TAAG
50027680 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 36 0.13
96 147 0.53
98 95 0.34
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:50027854 original size:37 final size:37
Alignment explanation
Indices: 50027798--50027876 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50027788 CCGAGCTCTA
* * *
50027798 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
50027835 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50027872 AAGAC
1 AAGAC
50027877 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50031858 original size:21 final size:21
Alignment explanation
Indices: 50031834--50031873 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
50031824 ATTATGTTCC
* *
50031834 TTAAATATTTTTGTAAATTTT
1 TTAAATATTATTATAAATTTT
*
50031855 TTAATTATTATTATAAATT
1 TTAAATATTATTATAAATT
50031874 AGAACAAGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
TTAAATATTATTATAAATTTT
Found at i:50032418 original size:38 final size:38
Alignment explanation
Indices: 50032376--50032717 Score: 171
Period size: 38 Copynumber: 8.0 Consensus size: 38
50032366 TTTCAAATTA
*
50032376 ACATGTATAACCGTGGCATATTCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
50032414 ACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC-GT--T
* * *
50032455 GAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCATGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
50032499 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
50032547 ACACGTATAACCTTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
50032588 GAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
50032632 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
50032680 ACACGTATAACCTTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
50032718 TTTCCATTCT
Statistics
Matches: 240, Mismatches: 30, Indels: 68
0.71 0.09 0.20
Matches are distributed among these distances:
38 88 0.37
39 2 0.01
40 4 0.02
41 4 0.02
42 6 0.03
43 2 0.01
44 4 0.02
45 6 0.03
46 6 0.03
47 51 0.21
48 67 0.28
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:50032524 original size:48 final size:48
Alignment explanation
Indices: 50032416--50032687 Score: 316
Period size: 48 Copynumber: 5.9 Consensus size: 48
50032406 ACCACGTTAC
* * *
50032416 ATGTTTAACCGTGGTATATCCACTTAGCACCACATTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
50032463 ATATGTAACCGTGGCATATCCAGTTAGCACCATGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
*
50032511 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAC----A-C---
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
50032551 --GTATAACCTTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
50032596 ATATGTAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
50032644 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
50032688 AACCTTGGTA
Statistics
Matches: 187, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
38 32 0.17
41 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
47 61 0.33
48 90 0.48
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:50032715 original size:133 final size:133
Alignment explanation
Indices: 50032378--50032717 Score: 599
Period size: 133 Copynumber: 2.6 Consensus size: 133
50032368 TCAAATTAAC
* * * * * * *
50032378 ATGTATAACCGTGGCATATTCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAG
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTATAACCTTGGTATATCCACTTAG
* *
50032443 CACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCATGTTACATGTATC
66 CACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATC
50032508 AAT
131 AAT
50032511 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTATAACCTTGGTATATCCACTTAG
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTATAACCTTGGTATATCCACTTAG
50032576 CACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATC
66 CACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATC
50032641 AAT
131 AAT
50032644 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTATAACCTTGGTATATCCACTTAG
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTATAACCTTGGTATATCCACTTAG
50032709 CACCACGTT
66 CACCACGTT
50032718 TTTCCATTCT
Statistics
Matches: 198, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
133 198 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (133 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTATAACCTTGGTATATCCACTTAG
CACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATC
AAT
Found at i:50035729 original size:15 final size:15
Alignment explanation
Indices: 50035688--50035734 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
50035678 GCTGTAAATG
* *
50035688 GGATTTCCATATCAT
1 GGATTTCCTTATCTT
*
50035703 GGATTTCTTTATCTT
1 GGATTTCCTTATCTT
*
50035718 GGATTTCCTTATTTT
1 GGATTTCCTTATCTT
50035733 GG
1 GG
50035735 GCTTCTCCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (15 bp):
GGATTTCCTTATCTT
Found at i:50037538 original size:39 final size:40
Alignment explanation
Indices: 50037435--50037619 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
50037425 TTGAATGATG
* *
50037435 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
50037474 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50037515 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50037554 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50037593 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50037620 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 76 0.61
41 12 0.10
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50037641 original size:79 final size:79
Alignment explanation
Indices: 50037490--50037652 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
50037480 ACTAAGATCT
* ** *
50037490 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGCTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGCGACTAAAT
*
50037555 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
50037569 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGCGA-CTA
* *
50037632 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
50037648 GAAGG
1 GAAGG
50037653 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGCGACTAAAT
CCGGGTTAAATCCC
Found at i:50042247 original size:55 final size:53
Alignment explanation
Indices: 50042144--50042393 Score: 253
Period size: 55 Copynumber: 4.7 Consensus size: 53
50042134 GGTTTAATAA
* *
50042144 TACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT-TCTAAGGCAAGG
1 TACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGCAAGG
* * * *
50042198 AAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAGAGG
1 -TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGCA-AGG
* * *
50042254 TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGG
1 TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
* * *
50042306 CTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-T-CAA---AAGG
1 -TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
* * *
50042355 ATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 -TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
50042394 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
49 40 0.24
52 5 0.03
53 46 0.27
54 8 0.05
55 66 0.39
56 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
Found at i:50042345 original size:108 final size:110
Alignment explanation
Indices: 50042146--50042395 Score: 322
Period size: 108 Copynumber: 2.4 Consensus size: 110
50042136 TTTAATAATA
*
50042146 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
50042211 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAGAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAGAGGTC
* **
50042256 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* * * *
50042318 ACCATGTCAAGACATGGCAATGGTAAGTTTC-A-AA---AG-GATA
65 ACCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAGAGGTC
* *
50042358 CCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
50042396 ACCCGTGTAT
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
102 32 0.26
103 4 0.03
106 2 0.02
107 4 0.03
108 48 0.39
109 7 0.06
110 27 0.22
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAGAGGTC
Found at i:50042610 original size:16 final size:16
Alignment explanation
Indices: 50042589--50042619 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50042579 ATAAATTTGA
50042589 TTAAGTAAGTAAGTAC
1 TTAAGTAAGTAAGTAC
*
50042605 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
50042620 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAC
Found at i:50043843 original size:136 final size:136
Alignment explanation
Indices: 50043594--50043843 Score: 464
Period size: 136 Copynumber: 1.8 Consensus size: 136
50043584 ATGCAGATTG
50043594 TCAGCTTCTCTGGAAGTTTTAAAAATAAATTGTTTGAGCTGTTTAAGTAATGAATTAAGTCCATT
1 TCAGCTTCTCTGGAAGTTTTAAAAATAAATTGTTTGAGCTGTTTAAGTAATGAATTAAGTCCATT
* *
50043659 AACACCTCGTGTTCGACTCCGGTGACGGTCTCGGGTACGAGGCGTTACATTTATATTTTTGACGC
66 AACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTACGAGGCATTACATTTATATTTTTGACGC
50043724 ATATTT
131 ATATTT
*
50043730 TCAGCTTCTCTGGAAGTTTTAAAAATAAATTGTTTGAGCTGTTTAAGTAATGAATTAAGTCCGTT
1 TCAGCTTCTCTGGAAGTTTTAAAAATAAATTGTTTGAGCTGTTTAAGTAATGAATTAAGTCCATT
*
50043795 AACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTACGGGGCATTACA
66 AACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTACGAGGCATTACA
50043844 GTTGTTATTA
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 110 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (136 bp):
TCAGCTTCTCTGGAAGTTTTAAAAATAAATTGTTTGAGCTGTTTAAGTAATGAATTAAGTCCATT
AACACCTCGTGTTCGACTCCGGCGACGGTCTCGGGTACGAGGCATTACATTTATATTTTTGACGC
ATATTT
Found at i:50044274 original size:48 final size:48
Alignment explanation
Indices: 50044219--50044347 Score: 188
Period size: 48 Copynumber: 2.7 Consensus size: 48
50044209 TACCACAGTT
* * *
50044219 ATACATGTGACGTGGTGTTATGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
50044267 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
*
50044315 ATTCAT-TAACGTGGTGCTAAGTGGATATACCAC
1 ATACATGTAACGTGGTGCTAAGTGGATATACCAC
50044348 AGTTAAACAT
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 26 0.36
48 47 0.64
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:50049417 original size:62 final size:62
Alignment explanation
Indices: 50049320--50049444 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
50049310 ATAGGAAGTT
* *
50049320 GGTTTGTTATATGTTTTATTATTATGACTTTGACCATACGTATCGGTCTGCATTGAGTCATC
1 GGTTTGTGATATGTTTTATTATTATGACTTTGACCATACGTATCGGGCTGCATTGAGTCATC
*
50049382 GGTTTGTGATATGTTTTATTATTATGACTTTGACCATACGTATTGGGCTGCATTGAGTCATC
1 GGTTTGTGATATGTTTTATTATTATGACTTTGACCATACGTATCGGGCTGCATTGAGTCATC
50049444 G
1 G
50049445 TATATGATCA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.21, C:0.14, G:0.22, T:0.44
Consensus pattern (62 bp):
GGTTTGTGATATGTTTTATTATTATGACTTTGACCATACGTATCGGGCTGCATTGAGTCATC
Found at i:50053269 original size:43 final size:43
Alignment explanation
Indices: 50053222--50053309 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
50053212 TATTCTCTTC
50053222 TCCCTATTTCCTAATCTTCTTAATGTGAGCCGAATTCAACCTT
1 TCCCTATTTCCTAATCTTCTTAATGTGAGCCGAATTCAACCTT
* *
50053265 TCCCTGTTTTCTAATCTTCTTAATGTGAGCCGAATTCAACCTT
1 TCCCTATTTCCTAATCTTCTTAATGTGAGCCGAATTCAACCTT
50053308 TC
1 TC
50053310 TTTCTCTGCC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.41
Consensus pattern (43 bp):
TCCCTATTTCCTAATCTTCTTAATGTGAGCCGAATTCAACCTT
Found at i:50053767 original size:30 final size:30
Alignment explanation
Indices: 50053731--50053790 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
50053721 TTTGATAATC
*
50053731 GGCTGAAAAGCCGAAAATGTGTGTGTTGTT
1 GGCTGAAAAGCCAAAAATGTGTGTGTTGTT
*
50053761 GGCTGAAAAGCTAAAAATGTGTGTGTTGTT
1 GGCTGAAAAGCCAAAAATGTGTGTGTTGTT
50053791 TACTCTGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.08, G:0.32, T:0.32
Consensus pattern (30 bp):
GGCTGAAAAGCCAAAAATGTGTGTGTTGTT
Found at i:50054199 original size:27 final size:27
Alignment explanation
Indices: 50054159--50054233 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
50054149 ACTGGGCTTG
50054159 TAAAATTACTGAAATACCCCTAATTTA
1 TAAAATTACTGAAATACCCCTAATTTA
*
50054186 TAAAATTA-TCGAAATACCCCTGATTTA
1 TAAAATTACT-GAAATACCCCTAATTTA
** *
50054213 TAAAACAACTGAAACACCCCT
1 TAAAATTACTGAAATACCCCT
50054234 GGGTTGTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.28
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCCTAATTTA
Found at i:50054301 original size:27 final size:27
Alignment explanation
Indices: 50054271--50054322 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
50054261 GATTTGTGAA
* *
50054271 ATTATTGAAATACCCTTGTAGGGTAGG
1 ATTATCGAAATACCCTTGTAAGGTAGG
50054298 ATTATCGAAATACCCTTGTAAGGTA
1 ATTATCGAAATACCCTTGTAAGGTA
50054323 AAACGACCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (27 bp):
ATTATCGAAATACCCTTGTAAGGTAGG
Found at i:50054665 original size:50 final size:50
Alignment explanation
Indices: 50054593--50054774 Score: 256
Period size: 50 Copynumber: 3.6 Consensus size: 50
50054583 GTTCTAATTG
* *
50054593 GGTCGCACGGGTCGCATAAGATGACTGTGGACCCAGTATTGATCTGTTAA
1 GGTCGCACGGGTCGCACAAGACGACTGTGGACCCAGTATTGATCTGTTAA
* * * * *
50054643 GTTCGCACGGGTCACACGAGATGACTGTGGACCCAGTATTGATTTGTTAA
1 GGTCGCACGGGTCGCACAAGACGACTGTGGACCCAGTATTGATCTGTTAA
* * * *
50054693 GGTCGCACGGGTCGCACGAGACGACTATGGACCCAGTATTTATCTATTAA
1 GGTCGCACGGGTCGCACAAGACGACTGTGGACCCAGTATTGATCTGTTAA
*
50054743 GGTCGTACGGGTCGCACAAGACGACTGTGGAC
1 GGTCGCACGGGTCGCACAAGACGACTGTGGAC
50054775 AGATAGATGG
Statistics
Matches: 117, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 117 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (50 bp):
GGTCGCACGGGTCGCACAAGACGACTGTGGACCCAGTATTGATCTGTTAA
Found at i:50060418 original size:46 final size:48
Alignment explanation
Indices: 50060311--50060633 Score: 220
Period size: 50 Copynumber: 6.8 Consensus size: 48
50060301 GGTTATTATG
* * *** *
50060311 AGCCAGTGTAAAACCATGTCTAGGACATGGCATCGATATTGAGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGTA
* *
50060358 GAGCTAGTGCAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGTA
* * *
50060405 AGCCAGTGTAAGA-CATGTTTGGGA-AT-GCATC-GACTACGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGACGTA
* * * * * *
50060449 -GTCAGTGTAAGACCATGTTTGGGACATTGCATCGGCAC-AGATATGTGAA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGACGT--A
* * *
50060498 AGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GACGTA
* * * * * ** *
50060546 TAGTCAGTGTAAGACCATGTATGGGACCACATGGCA-CCGACTCAAGATATG
1 -AGCCAGTGTAAGACCATGTCTGGG---ACATGGCATCGGCCTCGAGACGTA
50060597 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
50060634 ATTTTACCCC
Statistics
Matches: 216, Mismatches: 40, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
43 11 0.05
44 14 0.06
45 16 0.07
46 45 0.21
47 23 0.11
48 14 0.06
49 22 0.10
50 56 0.26
51 8 0.04
52 7 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGTA
Found at i:50076070 original size:39 final size:39
Alignment explanation
Indices: 50076021--50076316 Score: 414
Period size: 39 Copynumber: 7.5 Consensus size: 39
50076011 TAATGGAGAA
* *
50076021 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGAG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
50076060 TTATATCCGGGCTAAGTCCCGAAGCCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
** * *
50076099 TTATATCTAGGCTAAGTCCTGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
50076138 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCGGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
50076177 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
50076216 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
50076255 TTATATCTGGGCTAAAGTCCCGCAGGC-TTTGGGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
50076294 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
50076317 CATGCTTTGT
Statistics
Matches: 231, Mismatches: 24, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 209 0.90
40 22 0.10
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Done.