Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 157 of 276
Found at i:51061604 original size:35 final size:35
Alignment explanation
Indices: 51061558--51061628 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
51061548 CCAGAAAGTA
51061558 AGCAAAATTGCTAAAGAACACAATAAAGACTAGCC
1 AGCAAAATTGCTAAAGAACACAATAAAGACTAGCC
51061593 AGCAAAATTGCTAAAGAACACAATAAAGACTAGCC
1 AGCAAAATTGCTAAAGAACACAATAAAGACTAGCC
51061628 A
1 A
51061629 CCGAATCAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.52, C:0.20, G:0.14, T:0.14
Consensus pattern (35 bp):
AGCAAAATTGCTAAAGAACACAATAAAGACTAGCC
Found at i:51065095 original size:567 final size:567
Alignment explanation
Indices: 51064021--51065155 Score: 2270
Period size: 567 Copynumber: 2.0 Consensus size: 567
51064011 ATGAACTTAC
51064021 TGAGCATTATATGCTTACATAGTTTTCTTTCCTATGTTTTATAGATAATTAGAAGCTTGATCAGT
1 TGAGCATTATATGCTTACATAGTTTTCTTTCCTATGTTTTATAGATAATTAGAAGCTTGATCAGT
51064086 TTGGAAACTCATCGGAGATCTATCACACTATCCATCGATTATATTGGTAGTTTTTGATGTTTTGG
66 TTGGAAACTCATCGGAGATCTATCACACTATCCATCGATTATATTGGTAGTTTTTGATGTTTTGG
51064151 CCAAGGTTATAATGGCATGTATAGGTGGACTTATGTTTGAATGTTAGTTGATAAGTTTGGCAAGT
131 CCAAGGTTATAATGGCATGTATAGGTGGACTTATGTTTGAATGTTAGTTGATAAGTTTGGCAAGT
51064216 ATATGTTATTTTGGATTAATGTACTTTTGGTACTTTTGATGCTTTGTTGGTATGTGTTAATATGG
196 ATATGTTATTTTGGATTAATGTACTTTTGGTACTTTTGATGCTTTGTTGGTATGTGTTAATATGG
51064281 CTAAGTTTGATGCATGTTTTAATGGCCAATATGGTATGTGAGGAAATAGTTTCAAAATGGTCAAG
261 CTAAGTTTGATGCATGTTTTAATGGCCAATATGGTATGTGAGGAAATAGTTTCAAAATGGTCAAG
51064346 ATAGGTTATGCTTTGGAAAGGAATTGAACTAGATTTGTTGAATGAAATACAGTCAAATATGCATA
326 ATAGGTTATGCTTTGGAAAGGAATTGAACTAGATTTGTTGAATGAAATACAGTCAAATATGCATA
51064411 TGTTTAAGTATGTTGTATGTTTGCTTTTGAAGTGCCTTGTATGACATATTGGTTGTATGGATTTG
391 TGTTTAAGTATGTTGTATGTTTGCTTTTGAAGTGCCTTGTATGACATATTGGTTGTATGGATTTG
51064476 GTCTTTTGAATTGAATATTTCATGCATGTTTTGGTAAGGTTTTGAAGCTTTGAAGTTATGCACAA
456 GTCTTTTGAATTGAATATTTCATGCATGTTTTGGTAAGGTTTTGAAGCTTTGAAGTTATGCACAA
51064541 AATGTTTGTAGTTACATGTTTGGGATGGTGATGGAAATGTCTTGAAT
521 AATGTTTGTAGTTACATGTTTGGGATGGTGATGGAAATGTCTTGAAT
51064588 TGAGCATTATATGCTTACATAGTTTTCTTTCCTATGTTTTATAGATAATTAGAAGCTTGATCAGT
1 TGAGCATTATATGCTTACATAGTTTTCTTTCCTATGTTTTATAGATAATTAGAAGCTTGATCAGT
51064653 TTGGAAACTCATCGGAGATCTATCACACTATCCATCGATTATATTGGTAGTTTTTGATGTTTTGG
66 TTGGAAACTCATCGGAGATCTATCACACTATCCATCGATTATATTGGTAGTTTTTGATGTTTTGG
51064718 CCAAGGTTATAATGGCATGTATAGGTGGACTTATGTTTGAATGTTAGTTGATAAGTTTGGCAAGT
131 CCAAGGTTATAATGGCATGTATAGGTGGACTTATGTTTGAATGTTAGTTGATAAGTTTGGCAAGT
51064783 ATATGTTATTTTGGATTAATGTACTTTTGGTACTTTTGATGCTTTGTTGGTATGTGTTAATATGG
196 ATATGTTATTTTGGATTAATGTACTTTTGGTACTTTTGATGCTTTGTTGGTATGTGTTAATATGG
51064848 CTAAGTTTGATGCATGTTTTAATGGCCAATATGGTATGTGAGGAAATAGTTTCAAAATGGTCAAG
261 CTAAGTTTGATGCATGTTTTAATGGCCAATATGGTATGTGAGGAAATAGTTTCAAAATGGTCAAG
51064913 ATAGGTTATGCTTTGGAAAGGAATTGAACTAGATTTGTTGAATGAAATACAGTCAAATATGCATA
326 ATAGGTTATGCTTTGGAAAGGAATTGAACTAGATTTGTTGAATGAAATACAGTCAAATATGCATA
51064978 TGTTTAAGTATGTTGTATGTTTGCTTTTGAAGTGCCTTGTATGACATATTGGTTGTATGGATTTG
391 TGTTTAAGTATGTTGTATGTTTGCTTTTGAAGTGCCTTGTATGACATATTGGTTGTATGGATTTG
51065043 GTCTTTTGAATTGAATATTTCATGCATGTTTTGGTAAGGTTTTGAAGCTTTGAAGTTATGCACAA
456 GTCTTTTGAATTGAATATTTCATGCATGTTTTGGTAAGGTTTTGAAGCTTTGAAGTTATGCACAA
51065108 AATGTTTGTAGTTACATGTTTGGGATGGTGATGGAAATGTCTTGAAT
521 AATGTTTGTAGTTACATGTTTGGGATGGTGATGGAAATGTCTTGAAT
51065155 T
1 T
51065156 TGGCCAATTT
Statistics
Matches: 568, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
567 568 1.00
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (567 bp):
TGAGCATTATATGCTTACATAGTTTTCTTTCCTATGTTTTATAGATAATTAGAAGCTTGATCAGT
TTGGAAACTCATCGGAGATCTATCACACTATCCATCGATTATATTGGTAGTTTTTGATGTTTTGG
CCAAGGTTATAATGGCATGTATAGGTGGACTTATGTTTGAATGTTAGTTGATAAGTTTGGCAAGT
ATATGTTATTTTGGATTAATGTACTTTTGGTACTTTTGATGCTTTGTTGGTATGTGTTAATATGG
CTAAGTTTGATGCATGTTTTAATGGCCAATATGGTATGTGAGGAAATAGTTTCAAAATGGTCAAG
ATAGGTTATGCTTTGGAAAGGAATTGAACTAGATTTGTTGAATGAAATACAGTCAAATATGCATA
TGTTTAAGTATGTTGTATGTTTGCTTTTGAAGTGCCTTGTATGACATATTGGTTGTATGGATTTG
GTCTTTTGAATTGAATATTTCATGCATGTTTTGGTAAGGTTTTGAAGCTTTGAAGTTATGCACAA
AATGTTTGTAGTTACATGTTTGGGATGGTGATGGAAATGTCTTGAAT
Found at i:51066629 original size:21 final size:22
Alignment explanation
Indices: 51066587--51066643 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 22
51066577 TCTTTTCTTA
51066587 TATTACTTATTTTAAATTGTTTTAT
1 TATTA-TTATTTTAAA-TGTTTT-T
51066612 TATTATTATTTT-AA-GTTTTT
1 TATTATTATTTTAAATGTTTTT
*
51066632 CATATATTATTT
1 TAT-TATTATTT
51066644 GTTTTAAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.10
21 13 0.43
23 2 0.07
24 7 0.23
25 5 0.17
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (22 bp):
TATTATTATTTTAAATGTTTTT
Found at i:51066650 original size:49 final size:54
Alignment explanation
Indices: 51066546--51066651 Score: 141
Period size: 49 Copynumber: 2.1 Consensus size: 54
51066536 TTTTTAAAAA
*
51066546 AAATTGTTTTATTATTATCATTTATGTTAAGTCTTTTCTTATATTACTTATTTT
1 AAATTGTTTTATTATTATCATTTATGTTAAGTCTTTTCATATATTACTTATTTT
* * *
51066600 AAATTGTTTTATTA-T-T-A-TTATTTTAAGT-TTTTCATATATTATTTGTTTT
1 AAATTGTTTTATTATTATCATTTATGTTAAGTCTTTTCATATATTACTTATTTT
51066649 AAA
1 AAA
51066652 CCCTTTTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
49 21 0.44
50 10 0.21
51 1 0.02
52 1 0.02
53 1 0.02
54 14 0.29
ACGTcount: A:0.28, C:0.05, G:0.06, T:0.61
Consensus pattern (54 bp):
AAATTGTTTTATTATTATCATTTATGTTAAGTCTTTTCATATATTACTTATTTT
Found at i:51066659 original size:49 final size:51
Alignment explanation
Indices: 51066557--51066669 Score: 131
Period size: 49 Copynumber: 2.2 Consensus size: 51
51066547 AATTGTTTTA
* * ***
51066557 TTATTATCATTTATGTTAAGTCTTTTCTTATATTACTTATTTTAAATTGTT
1 TTATTATTATTTATGTTAAGTCTTTTCATATATTACTTATTTTAAACCCTT
* * *
51066608 TTATTATTA-TTATTTTAAGT-TTTTCATATATTATTTGTTTTAAACCCTT
1 TTATTATTATTTATGTTAAGTCTTTTCATATATTACTTATTTTAAACCCTT
51066657 TTATTATTTATTT
1 TTATTA-TTATTT
51066670 TGAATTGTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
49 29 0.56
50 13 0.25
51 10 0.19
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (51 bp):
TTATTATTATTTATGTTAAGTCTTTTCATATATTACTTATTTTAAACCCTT
Found at i:51066680 original size:22 final size:22
Alignment explanation
Indices: 51066587--51066680 Score: 71
Period size: 22 Copynumber: 4.0 Consensus size: 22
51066577 TCTTTTCTTA
*
51066587 TATTACTTATTTTAAATTGTTT
1 TATTATTTATTTTAAATTGTTT
* *
51066609 TATTATTATTATTTTAAGTTTTTCAT
1 TATTA-T-TTATTTTAAATTGTT--T
* ***
51066635 ATATTATTTGTTTTAAACCCTTT
1 -TATTATTTATTTTAAATTGTTT
*
51066658 TATTATTTATTTTGAATTGTTT
1 TATTATTTATTTTAAATTGTTT
51066680 T
1 T
51066681 TATAAATCAT
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
22 23 0.43
23 1 0.02
24 13 0.24
25 10 0.19
26 2 0.04
27 5 0.09
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (22 bp):
TATTATTTATTTTAAATTGTTT
Found at i:51068339 original size:19 final size:19
Alignment explanation
Indices: 51068315--51068368 Score: 94
Period size: 17 Copynumber: 2.9 Consensus size: 19
51068305 ATAATCTTCA
51068315 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
51068334 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
51068351 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
51068369 AGATATGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 17 0.52
19 16 0.48
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:51068358 original size:22 final size:19
Alignment explanation
Indices: 51068330--51068377 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
51068320 ATGCAATCTT
51068330 AGATATGATACAATCTTAGA
1 AGATATGAT-CAATCTTAGA
51068350 TATGATATG--CAATCTTAGA
1 -A-GATATGATCAATCTTAGA
51068369 AGATATGAT
1 AGATATGAT
51068378 TTTGTAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 10 0.42
21 1 0.04
22 6 0.25
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (19 bp):
AGATATGATCAATCTTAGA
Found at i:51068394 original size:22 final size:22
Alignment explanation
Indices: 51068315--51068391 Score: 71
Period size: 17 Copynumber: 3.8 Consensus size: 22
51068305 ATAATCTTCA
51068315 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
51068334 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
51068351 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
51068373 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
51068392 GATTTAATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
17 17 0.34
19 13 0.26
22 8 0.16
23 12 0.24
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:51070793 original size:41 final size:41
Alignment explanation
Indices: 51070731--51070811 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
51070721 AGCCAAAGGC
*
51070731 CGGTAGCTCATTTATCGACTGAGCGAATACAGATTTGTAAT
1 CGGTAGCTCATTTATCAACTGAGCGAATACAGATTTGTAAT
**
51070772 CGGTAGCTCATTTATCAACTGAGCGAATACTTATTTGTAA
1 CGGTAGCTCATTTATCAACTGAGCGAATACAGATTTGTAA
51070812 GGGCTTAACT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (41 bp):
CGGTAGCTCATTTATCAACTGAGCGAATACAGATTTGTAAT
Found at i:51071120 original size:79 final size:80
Alignment explanation
Indices: 51070957--51071136 Score: 197
Period size: 79 Copynumber: 2.3 Consensus size: 80
51070947 TCGTTCAAAT
* * * *
51070957 GCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATAT
* *
51071021 AGTAACTCGCACTAAT
65 AGTAACTAGCACTAAA
* ** *
51071037 GCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGATAT
* *
51071100 GGTCACTTAGCAC-AAA
65 AGTAAC-TAGCACTAAA
51071116 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
51071137 CATCATTCGA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
78 3 0.04
79 56 0.67
80 25 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATA
GTAACTAGCACTAAA
Found at i:51071136 original size:40 final size:40
Alignment explanation
Indices: 51070933--51071136 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
51070923 CAGAATTTAA
** * *
51070933 CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51070973 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
51071013 CCAGATTTAGTAACTCGCACTAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51071052 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51071092 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51071132 CCGGA
1 CCGGA
51071137 CATCATTCGA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 91 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51079226 original size:79 final size:81
Alignment explanation
Indices: 51079058--51079242 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
51079048 GCTACTCGTT
* *
51079058 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
51079122 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* * ** *
51079139 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAAGTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
* *
51079201 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
51079218 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
51079243 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCAC
Found at i:51079242 original size:40 final size:40
Alignment explanation
Indices: 51079039--51079242 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
51079029 CAGAATTTAA
** *
51079039 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51079079 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
51079119 CCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51079158 CCGGA-ATTAGTAAGTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51079198 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51079238 CCGGA
1 CCGGA
51079243 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51085913 original size:17 final size:17
Alignment explanation
Indices: 51085890--51085961 Score: 85
Period size: 16 Copynumber: 4.3 Consensus size: 17
51085880 TCTATTTCAA
51085890 AAAAAAAAGAATAAAAAG
1 AAAAAAAAGAA-AAAAAG
*
51085908 AAAAAAAAGAGAAAAAG
1 AAAAAAAAGAAAAAAAG
*
51085925 AATAAAAAG-AAAAAAG
1 AAAAAAAAGAAAAAAAG
* *
51085941 AGAAAAATG-AAAAAAG
1 AAAAAAAAGAAAAAAAG
51085957 AAAAA
1 AAAAA
51085962 TGGAGAGGCC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
16 23 0.49
17 14 0.30
18 10 0.21
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (17 bp):
AAAAAAAAGAAAAAAAG
Found at i:51085923 original size:26 final size:26
Alignment explanation
Indices: 51085893--51085961 Score: 101
Period size: 24 Copynumber: 2.8 Consensus size: 26
51085883 ATTTCAAAAA
51085893 AAAAAGAATAAAAAGAAAAAAAAGAG
1 AAAAAGAATAAAAAGAAAAAAAAGAG
51085919 AAAAAGAATAAAAAG--AAAAAAGAG
1 AAAAAGAATAAAAAGAAAAAAAAGAG
51085943 AAAAATG-A-AAAAAGAAAAA
1 AAAAA-GAATAAAAAGAAAAA
51085962 TGGAGAGGCC
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.15
24 15 0.38
25 4 0.10
26 15 0.38
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.04
Consensus pattern (26 bp):
AAAAAGAATAAAAAGAAAAAAAAGAG
Found at i:51085955 original size:9 final size:8
Alignment explanation
Indices: 51085891--51085961 Score: 74
Period size: 9 Copynumber: 8.6 Consensus size: 8
51085881 CTATTTCAAA
51085891 AAAAAAAG
1 AAAAAAAG
51085899 AATAAAAAG
1 AA-AAAAAG
51085908 AAAAAAAAG
1 -AAAAAAAG
*
51085917 AGAAAAAG
1 AAAAAAAG
51085925 AATAAAAAG
1 AA-AAAAAG
51085934 -AAAAAAG
1 AAAAAAAG
*
51085941 AGAAAAATG
1 A-AAAAAAG
51085950 -AAAAAAG
1 AAAAAAAG
51085957 AAAAA
1 AAAAA
51085962 TGGAGAGGCC
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
7 12 0.23
8 15 0.28
9 24 0.45
10 2 0.04
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:51085962 original size:14 final size:15
Alignment explanation
Indices: 51085935--51085963 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51085925 AATAAAAAGA
51085935 AAAAAGAGAAAAATG
1 AAAAAGAGAAAAATG
51085950 AAAAA-AGAAAAATG
1 AAAAAGAGAAAAATG
51085964 GAGAGGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (15 bp):
AAAAAGAGAAAAATG
Found at i:51087017 original size:44 final size:44
Alignment explanation
Indices: 51086819--51087153 Score: 260
Period size: 44 Copynumber: 7.6 Consensus size: 44
51086809 GAAACAAGAT
51086819 TTGGCATCCCTGTGCTTATAGGGAACAA-ATCGAAGATAGCAGA
1 TTGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGA
* * ** **
51086862 TCTGACA-CTCCTGTGCTTACAACGAAGC-AGATCGAAGATTTCAGCA
1 T-TGGCATC-CCTGTGCTTATAGGGAA-CAAGATCGAAGATAGCAG-A
* * * **
51086908 -TGGCATCCTTGTGTTTATAGGGAACAAG-TTGAAGATTTCAGCA
1 TTGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAG-A
* * *
51086951 -TGACATCCCTGTGTTTATAGGGAACAAGCT-GAAGATAGCAGA
1 TTGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGA
* *
51086993 TTTGGCATCCCTGTGTTTATAGGGAACAA-ATCAAAGATAGCAGA
1 -TTGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGA
* * * * **
51087037 TCTGACATTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA
1 T-TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAGATAGCAG-A
* * *
51087083 -TGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGTAGA
1 TTGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGA
* *
51087125 TTTGGCATCCTTGTGCTTATAAGGAACAA
1 -TTGGCATCCCTGTGCTTATAGGGAACAA
51087154 ATCAATGACA
Statistics
Matches: 234, Mismatches: 40, Indels: 35
0.76 0.13 0.11
Matches are distributed among these distances:
42 2 0.01
43 64 0.27
44 140 0.60
45 26 0.11
46 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TTGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGA
Found at i:51087093 original size:88 final size:88
Alignment explanation
Indices: 51086820--51087143 Score: 363
Period size: 88 Copynumber: 3.7 Consensus size: 88
51086810 AAACAAGATT
* * *
51086820 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAAC
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
51086885 GAAGCAGATCGAAGATTTCAGCA
66 GAAGCAGATCGAAGATTTCAGCA
* * * ** * * *
51086908 TGGCATCCTTGTGTTTATAGGGAACAAGTTGAAGATTTCAG--CATGACATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATC-TGACATTCCTGTGCTTACAG
* * **
51086971 GGAA-CA-AGCTGAAGATAGCAG-A
65 CGAAGCAGATC-GAAGATTTCAGCA
*
51086993 TTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAGATCTGACATTCCTGTGCTTACA
1 --TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACA
*
51087058 GTGAAGCAGATCGAAGATTTCAGCA
64 GCGAAGCAGATCGAAGATTTCAGCA
* * * * *
51087083 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCA-TCCTTGTGCTTA
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCC-TGTGCTTA
51087144 TAAGGAACAA
Statistics
Matches: 192, Mismatches: 34, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
85 3 0.02
86 12 0.06
87 56 0.29
88 106 0.55
89 12 0.06
90 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (88 bp):
TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
GAAGCAGATCGAAGATTTCAGCA
Found at i:51087485 original size:206 final size:206
Alignment explanation
Indices: 51087123--51087658 Score: 844
Period size: 206 Copynumber: 2.6 Consensus size: 206
51087113 GAAGATAGTA
* * *
51087123 GATTTGGCATCCTTGTGCTTATAAGGAACAAA-TCAATGACATAGTTGATTTGGCTTTCACG-GT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATTGAA-GACATAGTTGATTTGGCTTTCACGTGC
* *
51087186 TTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
65 TTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACCAATCGAAGTTTG
* * * * *
51087251 GCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGACCTTCATATGTTTATACTGAAA
130 GCGTCTCCATATTCGACAGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAA
*
51087316 CAGATCCAAGGT
195 CAGATCCAAGAT
*
51087328 GATTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGTTGATTTGGCTTTCACGTGCT
51087393 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACCAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACCAATCGAAGTTTGG
* *
51087458 CGTCTCCATATTCGACAGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC
131 CGTCTCCATATTCGACAGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAAC
51087523 AGATCCAAGAT
196 AGATCCAAGAT
* * * * * *
51087534 GGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGTTGATTTGGCTTTCACGTGCT
*
51087599 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA-AAACAGATCGAAG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACCA-ATCGAAG
51087659 ATAACAGATT
Statistics
Matches: 306, Mismatches: 22, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
205 58 0.19
206 248 0.81
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGTTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACCAATCGAAGTTTGG
CGTCTCCATATTCGACAGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAAC
AGATCCAAGAT
Found at i:51088065 original size:14 final size:15
Alignment explanation
Indices: 51088046--51088083 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
51088036 AATCTTTAAG
51088046 GATATG-CAATCTTA
1 GATATGACAATCTTA
51088060 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
51088077 GATATGA
1 GATATGA
51088084 TATGCAATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:51088097 original size:19 final size:19
Alignment explanation
Indices: 51088046--51088124 Score: 108
Period size: 19 Copynumber: 4.2 Consensus size: 19
51088036 AATCTTTAAG
51088046 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
51088065 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
51088082 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
*
51088101 GACATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
51088122 GAT
1 GAT
51088125 CTTGTAATCT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
17 17 0.33
19 27 0.52
21 8 0.15
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:51088136 original size:22 final size:21
Alignment explanation
Indices: 51088049--51088141 Score: 67
Period size: 19 Copynumber: 4.8 Consensus size: 21
51088039 CTTTAAGGAT
51088049 ATGCAATCTT--AGATATG--
1 ATGCAATCTTGAAGATATGAC
* *
51088066 ATACAATCTT--AGATATGAT
1 ATGCAATCTTGAAGATATGAC
*
51088085 ATGCAATCCT--AGATATGAC
1 ATGCAATCTTGAAGATATGAC
51088104 ATGCAATCTTGAAGATATGATC
1 ATGCAATCTTGAAGATATGA-C
* * *
51088126 TTGTAATCTTGGAGAT
1 ATGCAATCTTGAAGAT
51088142 TTAATTTGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
17 16 0.25
19 25 0.40
21 8 0.13
22 14 0.22
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.34
Consensus pattern (21 bp):
ATGCAATCTTGAAGATATGAC
Found at i:51088908 original size:84 final size:84
Alignment explanation
Indices: 51088809--51088977 Score: 304
Period size: 84 Copynumber: 2.0 Consensus size: 84
51088799 GTTATTTAGT
*
51088809 TTTGTCTTAATGATATTATTTATGTTTGTATAGAAATGTTAGAATATTTTGTACATCTATGCTTC
1 TTTGTCATAATGATATTATTTATGTTTGTATAGAAATGTTAGAATATTTTGTACATCTATGCTTC
51088874 ATGATGCATTAA-AGTGTCA
66 ATGATGCATTAATA-TGTCA
*
51088893 TTTGTCATAATGATATTATTTATGTTTGTATGGAAATGTTAGAATATTTTGTACATCTATGCTTC
1 TTTGTCATAATGATATTATTTATGTTTGTATAGAAATGTTAGAATATTTTGTACATCTATGCTTC
51088958 ATGATGCATTAATATGTCA
66 ATGATGCATTAATATGTCA
51088977 T
1 T
51088978 CCTATAACGT
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
84 81 0.99
85 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (84 bp):
TTTGTCATAATGATATTATTTATGTTTGTATAGAAATGTTAGAATATTTTGTACATCTATGCTTC
ATGATGCATTAATATGTCA
Found at i:51090822 original size:20 final size:20
Alignment explanation
Indices: 51090759--51090827 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
51090749 AGGGTATTAG
*
51090759 GGTTAATTGATTAAATTAT-
1 GGTTAATTGATTAAATTTTA
* *
51090778 GG---ATTGATTTAGAGTTTA
1 GGTTAATTGA-TTAAATTTTA
51090796 GGGTTAATTGATTAAATTTTA
1 -GGTTAATTGATTAAATTTTA
51090817 GGTTAATTGAT
1 GGTTAATTGAT
51090828 ACATACAAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
16 5 0.13
17 6 0.15
19 4 0.10
20 11 0.28
21 8 0.21
22 5 0.13
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (20 bp):
GGTTAATTGATTAAATTTTA
Found at i:51091386 original size:126 final size:125
Alignment explanation
Indices: 51091133--51091512 Score: 548
Period size: 126 Copynumber: 3.0 Consensus size: 125
51091123 TTTCTGCAAG
* * *
51091133 AATAATTCTGAGCAGACGTTTCTGGAA-AAAAAGTGTCGGAAAACGCTTCAAGCAGGATGCACTG
1 AATAATTCTGAGTAGACGTTTCT-GAACAAATAGTG-CCGAAAACGCTTCAAGCAGGATGCACTG
* * * *
51091197 TCAGTAAAATTTCT-AGAAAAGCTCCACGTGGATGCTCTTTTGCTACAGTAGTTTGTAGAAA
64 TCAGCAAAATTTCTGAAAAAAGCTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * *
51091258 AATAATTCTGAATAGACGTTTCTGAACAAATAGTGCCAAAAACGCTTCAAGAAGAATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
* *
51091323 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGTTCTTTTGCTACAGTAGTTCGTTGAAA
66 AGCAAAATTTCTGAAAAAAGCT-CCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
51091384 AATAATTCTGAGTAGACGTTTCTGAACAAGTAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
* * *
51091449 AGCAAAATTTCTGGAAAAACCTTCCACGTGGACGCTCTTTTACTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGAAAAAAGC-TCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
51091510 AAT
1 AAT
51091513 GAGGCTATAA
Statistics
Matches: 227, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
124 40 0.18
125 36 0.16
126 150 0.66
127 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (125 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGAAAAAAGCTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:51093160 original size:126 final size:126
Alignment explanation
Indices: 51092935--51093315 Score: 541
Period size: 126 Copynumber: 3.0 Consensus size: 126
51092925 TTTCTGCAAG
* * * *
51092935 AATAATTCTGAGCAGACGTTTCT-AAAAAATAGTGTCGAAAAACGTTTCAAGCAGGATGCACTGT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTG-CCAAAAACGCTTCAAGCAGGATGCACTGT
* * *
51092999 CAGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTACAATAGTAGTTCGTAGAAA
65 CAGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * *
51093061 AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGCCAAAAACACTTCAAGCAGGATGCACTGTT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCAAAAACGCTTCAAGCAGGATGCACTGTC
* * * *
51093126 AG-AAATTGTTTTGGAAAAAGCTCCAATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAAT-TTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * *
51093187 AATAATTCTGAGTAAACATTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCAAAAACGCTTCAAGCAGGATGCACTGTC
* * *
51093252 AGCAAAATTTCTAGAAAAAGCTCCCACGCGGACGTTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
51093313 AAT
1 AAT
51093316 GAGGCTATAA
Statistics
Matches: 224, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
125 4 0.02
126 206 0.92
127 14 0.06
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCAAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:51094827 original size:41 final size:41
Alignment explanation
Indices: 51094777--51094860 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
51094767 CTTAAAGCAA
* * *
51094777 GATGTACTGTCAGTAAAATTTCTAGAGAAAGCTCCCACATG
1 GATGCACTGTCAGCAAAATTTCTAGAAAAAGCTCCCACATG
* * *
51094818 GATGCACTGTTAGCAAAATTTCTGGAAAAAGCTCCCACGTG
1 GATGCACTGTCAGCAAAATTTCTAGAAAAAGCTCCCACATG
51094859 GA
1 GA
51094861 CGCTCTTTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.25
Consensus pattern (41 bp):
GATGCACTGTCAGCAAAATTTCTAGAAAAAGCTCCCACATG
Found at i:51096571 original size:126 final size:126
Alignment explanation
Indices: 51096338--51097097 Score: 1387
Period size: 126 Copynumber: 6.0 Consensus size: 126
51096328 TTTCTGCAAG
* * * **
51096338 AATAATTCTGAGCAGACGTTTCTGGAA-AAATAGTGTCGGAAAACACTTCAAGCAGGATGCACTG
1 AATAATTCTGAGTAGATGTTTCT-GAACAAATAGTG-CCGAAAATGCTTCAAGCAGGATGCACTG
* * * *
51096402 TCAGCAAAATTTCTAGAAAAAGCTCCCACGTGGACGCTATTTTGCTACAGTAGTTAGTAGAAA
64 TCAGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
51096465 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
51096530 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
51096591 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
51096656 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
51096717 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
51096782 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
51096843 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
51096908 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
51096969 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
*
51097034 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGGTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
51097095 AAT
1 AAT
51097098 GAGGCTATAA
Statistics
Matches: 622, Mismatches: 10, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
126 592 0.95
127 30 0.05
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (126 bp):
AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGGAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:51102225 original size:12 final size:12
Alignment explanation
Indices: 51102208--51102233 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51102198 TAGGGTGTCG
51102208 AAACCATTTTTA
1 AAACCATTTTTA
51102220 AAACCATTTTTA
1 AAACCATTTTTA
51102232 AA
1 AA
51102234 TCGAGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AAACCATTTTTA
Found at i:51102559 original size:53 final size:53
Alignment explanation
Indices: 51102496--51102601 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
51102486 GATGCAAACC
51102496 TCTTTTAATTAGAATGTCTCAATTTTGAAAACTAAGGCTCACTTATTTCAAAT
1 TCTTTTAATTAGAATGTCTCAATTTTGAAAACTAAGGCTCACTTATTTCAAAT
*
51102549 TCTTTTAATTAGAATGTCTCAATTTTGAAAATTAAGGCTCACTTATTTCAAAT
1 TCTTTTAATTAGAATGTCTCAATTTTGAAAACTAAGGCTCACTTATTTCAAAT
51102602 GAGTGAAAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.42
Consensus pattern (53 bp):
TCTTTTAATTAGAATGTCTCAATTTTGAAAACTAAGGCTCACTTATTTCAAAT
Found at i:51102908 original size:44 final size:43
Alignment explanation
Indices: 51102843--51102931 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 43
51102833 CGGCACTACC
51102843 TTTCTCGAAGTTTCCAAACATCAAGCATTGCCTTTTAATTTTTT
1 TTTCTCGAAGTTTCCAAACATCAAGCATTGCCTTTT-ATTTTTT
*
51102887 TTTCTCGAAGTTTCCAGACATCAAGCATTGCCTTTTATTTTTT
1 TTTCTCGAAGTTTCCAAACATCAAGCATTGCCTTTTATTTTTT
51102930 TT
1 TT
51102932 AAAATAAACC
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 9 0.20
44 35 0.80
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.47
Consensus pattern (43 bp):
TTTCTCGAAGTTTCCAAACATCAAGCATTGCCTTTTATTTTTT
Found at i:51103760 original size:23 final size:22
Alignment explanation
Indices: 51103717--51103774 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
51103707 AAAAGGTATC
* *
51103717 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
51103738 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
51103761 TACATATCATATCT
1 TACAAATCATATCT
51103775 AATATTGCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:51103768 original size:17 final size:19
Alignment explanation
Indices: 51103730--51103835 Score: 101
Period size: 19 Copynumber: 5.5 Consensus size: 19
51103720 AAATTAAATC
*
51103730 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
51103750 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
* *
51103772 TCTAATATTGCA-ATCATA
1 TCTAAGATTACATATCATA
*
51103790 TCTAAGATT--GTATCATA
1 TCTAAGATTACATATCATA
* *
51103807 TCTAAGATTGCATATCATT
1 TCTAAGATTACATATCATA
51103826 TCTAAGATTA
1 TCTAAGATTA
51103836 TATTTCCATA
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
17 15 0.21
18 14 0.19
19 25 0.35
22 7 0.10
23 11 0.15
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:51103808 original size:35 final size:36
Alignment explanation
Indices: 51103765--51103834 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 36
51103755 TAAGATTACA
*
51103765 TATCATATCTAATATTGCA-ATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
*
51103800 TATCATATCTAAGATTGCATATCATTTCTAAGATT
1 TATCATATCTAAGATTGCATATCATATCTAAGATT
51103835 ATATTTCCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 18 0.56
36 14 0.44
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:51103822 original size:14 final size:15
Alignment explanation
Indices: 51103785--51103822 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
51103775 AATATTGCAA
51103785 TCATATCTAAGATTG
1 TCATATCTAAGATTG
51103800 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
51103817 -CATATC
1 TCATATC
51103823 ATTTCTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:51103824 original size:19 final size:19
Alignment explanation
Indices: 51103753--51103834 Score: 116
Period size: 19 Copynumber: 4.5 Consensus size: 19
51103743 AATCATATCT
*
51103753 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
51103772 TCTAATATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
51103790 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
51103807 TCTAAGATTGCATATCATT
1 TCTAAGATTGCATATCATA
51103826 TCTAAGATT
1 TCTAAGATT
51103835 ATATTTCCAT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
17 16 0.29
18 15 0.27
19 25 0.45
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:51106427 original size:47 final size:47
Alignment explanation
Indices: 51106375--51106671 Score: 477
Period size: 47 Copynumber: 6.3 Consensus size: 47
51106365 GTTCAAGATA
51106375 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
51106422 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
51106469 TAAATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
51106516 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
51106563 TATATATGTGACAAAGCCTAATGGCCGATGTGATGGATGTGAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
51106610 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
51106657 TATAAATGTGATAAG
1 TATATATGTGATAAG
51106672 TCCCGAAGGA
Statistics
Matches: 231, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 231 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:51108489 original size:261 final size:261
Alignment explanation
Indices: 51108047--51108542 Score: 719
Period size: 261 Copynumber: 1.9 Consensus size: 261
51108037 GCAAACTCAA
* * * *
51108047 GACTGTCATGTTGATATCTTCAATCTGCTCTCCGTCGAACACAAAGATGTCAAATCTGCTTCTTC
1 GACTGTCATGTTGATATCTTCAATCTGCTCTCCGCCGAACACAAAGACGCCAAATCTGCTTCCTC
* * * *
51108112 GATTTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGA
66 AATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGA
* * *
51108177 AAGCCAAATCTACTGTGTCTTCGATTTGCTCCCTGTGAACACAAGGATGCCAAATCATCTTGGAT
131 AAACCAAATCTACTATGTCTTCGATTTGCTCCCTGTGAACACAAGGATGCCAAACCATCTTGGAT
51108242 CTGCTTCAATA-AAATCATCTGAAAGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTT
196 CTGCTTCAATATAAA-CATCTGAAAGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTT
51108306 AT
260 AT
* * * * * *
51108308 GACTGTCCTGTTGATATCTTCGATCTGCTCTCTGCCGAATACAGAGACGCCAAATCTGTTTCCTC
1 GACTGTCATGTTGATATCTTCAATCTGCTCTCCGCCGAACACAAAGACGCCAAATCTGCTTCCTC
* *
51108373 AATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGA
66 AATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGA
* * *
51108438 AAACCAAATC-AGCTATGTCTTTGATTTGTTCCTTGT-AAGCACAAGGATGCCAAACCATCTTGG
131 AAACCAAATCTA-CTATGTCTTCGATTTGCTCCCTGTGAA-CACAAGGATGCCAAACCATCTTGG
* * *
51108501 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGT
194 ATCTGCTTCAATATAAACATCTGAAAGTCAGATCTGCTATGT
51108543 ATCTACTCTC
Statistics
Matches: 207, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
260 3 0.01
261 201 0.97
262 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (261 bp):
GACTGTCATGTTGATATCTTCAATCTGCTCTCCGCCGAACACAAAGACGCCAAATCTGCTTCCTC
AATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGA
AAACCAAATCTACTATGTCTTCGATTTGCTCCCTGTGAACACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAATATAAACATCTGAAAGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTA
T
Found at i:51108621 original size:205 final size:205
Alignment explanation
Indices: 51108374--51109127 Score: 1346
Period size: 205 Copynumber: 3.7 Consensus size: 205
51108364 TGTTTCCTCA
51108374 ATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAA
1 ATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAA
*
51108439 AACCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
51108504 TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTTGAAATGGAGATG
131 TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTTGAAATGGAGATG
51108569 CCAGACTTCG
196 CCAGACTTCG
* * *
51108579 ATTTGTACACTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAA
1 ATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAA
*
51108644 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
51108709 TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTTGAAATGGAGATG
131 TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTTGAAATGGAGATG
51108774 CCAGACTTCG
196 CCAGACTTCG
* *
51108784 ATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAA
1 ATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAA
*
51108849 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* * *
51108914 TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATA
131 TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTTGAAATGGAGATG
* *
51108979 CAAAACTTCG
196 CCAGACTTCG
* * *
51108989 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCGTCAGCGTAAGCACACGAA
1 ATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAA
*
51109054 AACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
51109119 TTGCTTCAG
131 -TGCTTCAG
51109128 CCAGATCTGC
Statistics
Matches: 528, Mismatches: 20, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
205 520 0.98
206 8 0.02
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (205 bp):
ATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAA
AACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTTGAAATGGAGATG
CCAGACTTCG
Found at i:51110088 original size:8 final size:8
Alignment explanation
Indices: 51110075--51110127 Score: 56
Period size: 8 Copynumber: 6.8 Consensus size: 8
51110065 TCCATTTGTC
51110075 TTTTTTAT
1 TTTTTTAT
51110083 TTTTTTAT
1 TTTTTTAT
* *
51110091 ATTTAT-T
1 TTTTTTAT
51110098 TTTTTTAT
1 TTTTTTAT
*
51110106 CTTTTTAT
1 TTTTTTAT
51110114 TTTCTTT-T
1 TTT-TTTAT
51110122 TTTTTT
1 TTTTTT
51110128 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
7 8 0.22
8 26 0.70
9 3 0.08
ACGTcount: A:0.11, C:0.04, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTAT
Found at i:51110094 original size:23 final size:21
Alignment explanation
Indices: 51110068--51110127 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 21
51110058 TGGCCTCTCC
51110068 ATTTGTCTTTTTTATTTTTTTAT
1 ATTT-TCTTTTTTATTTTTTT-T
* *
51110091 ATTTATTTTTTTTA-TCTTTTT
1 ATTT-TCTTTTTTATTTTTTTT
51110112 ATTTTCTTTTTT-TTTT
1 ATTTTCTTTTTTATTTT
51110128 GAAATAGAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 9 0.29
21 5 0.16
22 5 0.16
23 12 0.39
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.82
Consensus pattern (21 bp):
ATTTTCTTTTTTATTTTTTTT
Found at i:51110110 original size:22 final size:23
Alignment explanation
Indices: 51110075--51110125 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
51110065 TCCATTTGTC
51110075 TTTTTTATT-TTTTTATATTTATT
1 TTTTTTATTCTTTTTAT-TTTATT
*
51110098 TTTTTTA-TCTTTTTATTTTCTT
1 TTTTTTATTCTTTTTATTTTATT
51110120 TTTTTT
1 TTTTTT
51110126 TTGAAATAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.12, C:0.04, G:0.00, T:0.84
Consensus pattern (23 bp):
TTTTTTATTCTTTTTATTTTATT
Found at i:51111588 original size:93 final size:93
Alignment explanation
Indices: 51111429--51111599 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51111419 AGATGGTTGA
* * *
51111429 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
*
51111494 TGAGTCGGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
51111522 GCATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCAAATGCCCGAAGTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
51111587 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51111600 ACTTATGGAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51111663 original size:139 final size:139
Alignment explanation
Indices: 51111433--51111738 Score: 567
Period size: 139 Copynumber: 2.2 Consensus size: 139
51111423 GGTTGAGCAT
51111433 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
*
51111498 TCGGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGA
66 TCGGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
51111563 TGCAAATGC
131 TGCAAATGC
*
51111572 CCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
51111637 TCGGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
66 TCGGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
* *
51111702 TGCGAATGT
131 TGCAAATGC
*
51111711 CCTAACTCGTTGAGTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
51111739 GTGAGATGTA
Statistics
Matches: 161, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 161 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (139 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
TCGGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
TGCAAATGC
Found at i:51111669 original size:93 final size:93
Alignment explanation
Indices: 51111572--51111831 Score: 475
Period size: 93 Copynumber: 2.8 Consensus size: 93
51111562 ATGCAAATGC
*
51111572 CCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
*
51111637 TCGGAGTTCGTGAGATGTAACTAGGCAT
66 TCCGAGTTCGTGAGATGTAACTAGGCAT
51111665 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
51111730 TCCGAGTTCGTGAGATGTAACTAGGCAT
66 TCCGAGTTCGTGAGATGTAACTAGGCAT
* * *
51111758 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
51111823 TCCGAGTTC
66 TCCGAGTTC
51111832 ACTTATGGGC
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 162 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
TCCGAGTTCGTGAGATGTAACTAGGCAT
Found at i:51111808 original size:139 final size:136
Alignment explanation
Indices: 51111433--51111839 Score: 482
Period size: 139 Copynumber: 2.9 Consensus size: 136
51111423 GGTTGAGCAT
* *
51111433 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAATGTCCGAACTCGTTGAGTTGAG
* * * *
51111498 TCGGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGA
65 TCCGAGTTCCTGAGATGCAAC-AGGCA-CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
51111563 TGCAAATGC
128 TGCAAATGC
* * *
51111572 CCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAATGTCCGAACTCGTTGAGTTGAG
* * *
51111637 TCGGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
65 TCCGAGTTCCTGAGATGCAAC-AGGCA-CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
* *
51111702 TGCGAATGT
128 TGCAAATGC
* * *
51111711 CCTAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATCCGAACTCGTTGAGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T--G--TCCGAACTCGTTGAGT
* *
51111773 TGAGTCCGAGTTCACTTATGGATGCAA-ATGC-CCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
61 TGAGTCCGAGTTC-CTGA--GATGCAACAGGCACCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
51111836 ATGG
123 ATGG
51111840 GCGGGTTACA
Statistics
Matches: 245, Mismatches: 15, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
135 2 0.01
136 5 0.02
138 3 0.01
139 197 0.80
140 27 0.11
141 5 0.02
143 6 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (136 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAATGTCCGAACTCGTTGAGTTGAGT
CCGAGTTCCTGAGATGCAACAGGCACCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
AAATGC
Found at i:51117245 original size:46 final size:46
Alignment explanation
Indices: 51117192--51117367 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
51117182 TGGTTGAGCA
51117192 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
51117238 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* **
51117283 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51117331 CCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51117368 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 27 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51117348 original size:93 final size:93
Alignment explanation
Indices: 51117189--51117359 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51117179 GGATGGTTGA
*** **
51117189 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCAAACTCGTTGAGT
51117254 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
51117282 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCAAACTCGTTGAGT
51117347 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51117360 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51124198 original size:22 final size:21
Alignment explanation
Indices: 51124168--51124233 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
51124158 TACAAATTAA
51124168 ATCTCCAAGATTACCAGATCAT
1 ATCTCCAAGATT-CCAGATCAT
* * *
51124190 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTCCAGATCAT
* *
51124211 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTCCAGATCAT
51124230 ATCT
1 ATCT
51124234 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 11 0.27
22 11 0.27
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTCCAGATCAT
Found at i:51124220 original size:19 final size:19
Alignment explanation
Indices: 51124185--51124263 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
51124175 AGATTACCAG
51124185 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
51124206 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
51124225 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
51124242 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
51124261 ATC
1 ATC
51124264 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:51124227 original size:14 final size:15
Alignment explanation
Indices: 51124207--51124263 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
51124197 AGATTGCATA
51124207 TCATATCTAAGATTG
1 TCATATCTAAGATTG
51124222 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
51124241 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
51124258 -CATATC
1 TCATATC
51124264 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:51124249 original size:36 final size:39
Alignment explanation
Indices: 51124185--51124263 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
51124175 AGATTACCAG
51124185 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
51124225 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
51124261 ATC
1 ATC
51124264 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:51126622 original size:126 final size:126
Alignment explanation
Indices: 51126397--51126778 Score: 559
Period size: 126 Copynumber: 3.0 Consensus size: 126
51126387 TTATAGCCTC
* * * *
51126397 ATTTTTCTACGAACTACTGTAGCAAAAAAGTGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTA
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
51126462 ACATTGCATCCTGCTTGAAGCGTTTTTGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
*
51126523 ATTTTTCTATGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
51126588 ACAGTGCATCCTGCTTGAAGCGTCTTCGGCACTATTTGTTTAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * * *
51126649 ATTTTTCTACGAATTACTGTAGGAAAAGAGCATCCACGTGGAAGCATTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* ** * * *
51126714 ACAGTGCATCCTACTTGAAGCGTTTTCCAACATTATTT-TTCCAGAAACGTCTGCTCAAAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTT-CGGCACTATTTGTT-CAGAAACGTCTACTCAGAATT
51126776 ATT
1 ATT
51126779 CTTGCAGAAA
Statistics
Matches: 231, Mismatches: 23, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
126 202 0.87
127 29 0.13
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:51131675 original size:20 final size:20
Alignment explanation
Indices: 51131652--51131709 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
51131642 TTCATCCGTA
*
51131652 TCAATAGTAGTTCATTCATT
1 TCAACAGTAGTTCATTCATT
* *
51131672 TCAACAGTAATTCATCCATT
1 TCAACAGTAGTTCATTCATT
*
51131692 TCAACA-TAGCTCATTCAT
1 TCAACAGTAGTTCATTCAT
51131710 ATGATCGGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 9 0.28
20 23 0.72
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (20 bp):
TCAACAGTAGTTCATTCATT
Found at i:51131881 original size:25 final size:24
Alignment explanation
Indices: 51131853--51131908 Score: 87
Period size: 23 Copynumber: 2.3 Consensus size: 24
51131843 AGGCTCCTCC
51131853 TGAGCTGATAAATAGTAAGCTCTAT
1 TGAGCTGA-AAATAGTAAGCTCTAT
51131878 TGAGCTG-AAATAGTAAGCTCTAT
1 TGAGCTGAAAATAGTAAGCTCTAT
*
51131901 CGAGCTGA
1 TGAGCTGA
51131909 GTGGTAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 22 0.76
25 7 0.24
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (24 bp):
TGAGCTGAAAATAGTAAGCTCTAT
Found at i:51131892 original size:23 final size:23
Alignment explanation
Indices: 51131853--51131955 Score: 86
Period size: 23 Copynumber: 4.4 Consensus size: 23
51131843 AGGCTCCTCC
51131853 TGAGCTGATAAATAGTAAGCTCTAT
1 TGAGCTG--AAATAGTAAGCTCTAT
51131878 TGAGCTGAAATAGTAAGCTCTAT
1 TGAGCTGAAATAGTAAGCTCTAT
* * *
51131901 CGAGCTG-AGTGGTAAGCTC-AT
1 TGAGCTGAAATAGTAAGCTCTAT
* * * *
51131922 ATGAGTTG-AATCGGTAAGCTCCAA
1 -TGAGCTGAAAT-AGTAAGCTCTAT
51131946 TGAGCTGAAA
1 TGAGCTGAAA
51131956 ACAGTAGGCT
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
21 2 0.03
22 17 0.26
23 37 0.56
24 3 0.05
25 7 0.11
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (23 bp):
TGAGCTGAAATAGTAAGCTCTAT
Found at i:51135528 original size:28 final size:28
Alignment explanation
Indices: 51135496--51135623 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
51135486 ATAGTAAGTC
*
51135496 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51135524 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
51135553 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
51135581 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51135610 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51135624 CGAAATCAAC
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51135586 original size:57 final size:57
Alignment explanation
Indices: 51135495--51135623 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
51135485 TATAGTAAGT
*
51135495 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
51135552 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
51135609 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51135624 CGAAATCAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:51139585 original size:59 final size:59
Alignment explanation
Indices: 51139493--51139605 Score: 163
Period size: 59 Copynumber: 1.9 Consensus size: 59
51139483 AAGTATGTAT
* *
51139493 CATGGCCCTTATGGCAGATCAACCATGGAGCAAGAATTGGACCAGCATCGGTTTGAGCC
1 CATGGCCCTTATGGCAGACCAACCATAGAGCAAGAATTGGACCAGCATCGGTTTGAGCC
* * * * *
51139552 CATGGCTCTTATGGCAGACCAACTATAGAGCAAGAGTTGGGCCAGCGTCGGTTT
1 CATGGCCCTTATGGCAGACCAACCATAGAGCAAGAATTGGACCAGCATCGGTTT
51139606 AGGCCTCTTG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 47 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (59 bp):
CATGGCCCTTATGGCAGACCAACCATAGAGCAAGAATTGGACCAGCATCGGTTTGAGCC
Found at i:51154290 original size:25 final size:24
Alignment explanation
Indices: 51154259--51154329 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 24
51154249 ATTTGAAAAG
* * *
51154259 TTTTAATATAATTAAATTTATTTT
1 TTTTAATTTAATTAAATTTAATTC
*
51154283 TTTATAATTTAATTTAATTTAATTC
1 TTT-TAATTTAATTAAATTTAATTC
*
51154308 TTTTAATTTAATTTTAATTTAA
1 TTTTAATTTAA-TTAAATTTAA
51154330 AAGTTCATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
24 11 0.27
25 30 0.73
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTAATTTAATTAAATTTAATTC
Found at i:51154295 original size:5 final size:5
Alignment explanation
Indices: 51154260--51154329 Score: 56
Period size: 5 Copynumber: 14.0 Consensus size: 5
51154250 TTTGAAAAGT
* * **
51154260 TTTAA TATAA TTAAA TTT-A TTTTT TTATAA TTTAA TTTAA TTTAA TTCT--
1 TTTAA TTTAA TTTAA TTTAA TTTAA TT-TAA TTTAA TTTAA TTTAA TT-TAA
51154309 TTTAA TTTAA TTTTAA TTTAA
1 TTTAA TTTAA -TTTAA TTTAA
51154330 AAGTTCATTC
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
3 1 0.02
4 6 0.12
5 36 0.69
6 9 0.17
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (5 bp):
TTTAA
Found at i:51159322 original size:50 final size:50
Alignment explanation
Indices: 51159260--51159354 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
51159250 AAAATCAAAT
* * *
51159260 ATATAACATCACATATGTATATATCTATATGGTCGAATATACATGATAAA
1 ATATAACATCACATATGTACATACCTATATGGCCGAATATACATGATAAA
*
51159310 ATATAACATCACATATGTACATACCTATGTGGCCGAATATACATG
1 ATATAACATCACATATGTACATACCTATATGGCCGAATATACATG
51159355 GTCATTTAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.32
Consensus pattern (50 bp):
ATATAACATCACATATGTACATACCTATATGGCCGAATATACATGATAAA
Found at i:51161589 original size:6 final size:6
Alignment explanation
Indices: 51161564--51161610 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
51161554 GTACCTAAAT
* * *
51161564 AGTAATC AGTAAC GGTAGC AGTAGC AGTAAC AGTAAC AGTAAC AGTA
1 AGTAA-C AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTA
51161611 TTCAACACAC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
6 31 0.86
7 5 0.14
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (6 bp):
AGTAAC
Found at i:51161640 original size:45 final size:45
Alignment explanation
Indices: 51161590--51161735 Score: 256
Period size: 45 Copynumber: 3.2 Consensus size: 45
51161580 AGCAGTAGCA
*
51161590 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAATCT
1 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAATCT
*
51161635 GTAACAGTAACGGTAACAGTATTCGACACACAAAGTGTTGAATCT
1 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAATCT
* *
51161680 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCG
1 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAATCT
51161725 GTAACAGTAAC
1 GTAACAGTAAC
51161736 GGAAACAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAATCT
Found at i:51162472 original size:17 final size:18
Alignment explanation
Indices: 51162450--51162483 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51162440 AATCTCTAGC
51162450 TTTTT-CCTTTTTCTTTT
1 TTTTTCCCTTTTTCTTTT
51162467 TTTTTCCCTTTTTCTTT
1 TTTTTCCCTTTTTCTTT
51162484 CTCTTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTCCCTTTTTCTTTT
Found at i:51165163 original size:18 final size:18
Alignment explanation
Indices: 51165142--51165176 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51165132 GATCAATAGC
*
51165142 GTCACTAGCATCAATATT
1 GTCACTAGAATCAATATT
*
51165160 GTCACTATAATCAATAT
1 GTCACTAGAATCAATAT
51165177 CGATATCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (18 bp):
GTCACTAGAATCAATATT
Found at i:51168210 original size:19 final size:19
Alignment explanation
Indices: 51168175--51168222 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
51168165 TTAACTATAC
*
51168175 AATATTATATTTATCATTT
1 AATATTTTATTTATCATTT
51168194 AATATTTTA-TTATTCATTT
1 AATATTTTATTTA-TCATTT
*
51168213 CATGATTTTA
1 AAT-ATTTTA
51168223 GTAGAATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 3 0.12
19 16 0.64
20 6 0.24
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (19 bp):
AATATTTTATTTATCATTT
Found at i:51169807 original size:18 final size:18
Alignment explanation
Indices: 51169784--51169825 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
51169774 ATGACACATC
* *
51169784 AAAAAATAATTTAAAAAT
1 AAAAAATAAATCAAAAAT
51169802 AAAAAA-AAATCAAAAAT
1 AAAAAATAAATCAAAAAT
*
51169819 CAAAAAT
1 AAAAAAT
51169826 TTAAGAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAAAATAAATCAAAAAT
Found at i:51169834 original size:8 final size:8
Alignment explanation
Indices: 51169820--51169864 Score: 72
Period size: 8 Copynumber: 5.6 Consensus size: 8
51169810 ATCAAAAATC
51169820 AAAAATTT
1 AAAAATTT
*
51169828 AAGAATTT
1 AAAAATTT
51169836 AAAAATTT
1 AAAAATTT
51169844 AAAAATTT
1 AAAAATTT
*
51169852 AAAATTTT
1 AAAAATTT
51169860 AAAAA
1 AAAAA
51169865 AATTATAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (8 bp):
AAAAATTT
Found at i:51169840 original size:24 final size:24
Alignment explanation
Indices: 51169813--51169865 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
51169803 AAAAAAAATC
51169813 AAAAATCAAAAATTTAAGAA-TTTA
1 AAAAATCAAAAATTTAA-AATTTTA
* *
51169837 AAAATTTAAAAATTTAAAATTTTA
1 AAAAATCAAAAATTTAAAATTTTA
51169861 AAAAA
1 AAAAA
51169866 ATTATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (24 bp):
AAAAATCAAAAATTTAAAATTTTA
Found at i:51170318 original size:12 final size:12
Alignment explanation
Indices: 51170303--51170332 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
51170293 AAAATTTTCT
51170303 AAAAAAATTATA
1 AAAAAAATTATA
51170315 AAAAAAATTATA
1 AAAAAAATTATA
51170327 AAAAAA
1 AAAAAA
51170333 TAGCATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAAAAATTATA
Found at i:51172241 original size:43 final size:43
Alignment explanation
Indices: 51172186--51172287 Score: 143
Period size: 43 Copynumber: 2.4 Consensus size: 43
51172176 ATATCTCATA
* *
51172186 ATAATAGCCTATAATATCCTATTAGGAATCAAATTACTAATAG
1 ATAATACCCTATAATATCCTATTAGGAATCAAATTACTAAAAG
* * *
51172229 ATAATACCCTATAATATCCTATTATGAATCAATTTGCTAAAAG
1 ATAATACCCTATAATATCCTATTAGGAATCAAATTACTAAAAG
51172272 ATAATATCCC-ATAATA
1 ATAATA-CCCTATAATA
51172288 ATATCTTAAC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
43 50 0.94
44 3 0.06
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (43 bp):
ATAATACCCTATAATATCCTATTAGGAATCAAATTACTAAAAG
Found at i:51177027 original size:22 final size:23
Alignment explanation
Indices: 51176986--51177032 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
51176976 CCATAGTTGA
51176986 TTTTTGTAGATTCACATTGG-CT
1 TTTTTGTAGATTCACATTGGACT
* * *
51177008 TTTTTTTAGATTTACTTTGGACT
1 TTTTTGTAGATTCACATTGGACT
51177031 TT
1 TT
51177033 AGGCTTTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.17, C:0.11, G:0.15, T:0.57
Consensus pattern (23 bp):
TTTTTGTAGATTCACATTGGACT
Found at i:51180847 original size:31 final size:31
Alignment explanation
Indices: 51180811--51180870 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
51180801 GTTCCTAGGA
*
51180811 AAAGAAAATTCAACAAGCCTTGCAGCAAGGG
1 AAAGAAAATTCAACAACCCTTGCAGCAAGGG
51180842 AAAGAAAATTCAACAACCCTTGCAGCAAG
1 AAAGAAAATTCAACAACCCTTGCAGCAAG
51180871 TGTGGTATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.47, C:0.22, G:0.18, T:0.13
Consensus pattern (31 bp):
AAAGAAAATTCAACAACCCTTGCAGCAAGGG
Found at i:51185349 original size:6 final size:6
Alignment explanation
Indices: 51185328--51185360 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
51185318 TTTGACACTT
*
51185328 AAAATA TAAA-A AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
51185361 CTCAAAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:51192792 original size:12 final size:12
Alignment explanation
Indices: 51192775--51192807 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
51192765 ATTGTATAAA
51192775 ATTTATTTTATT
1 ATTTATTTTATT
*
51192787 ATTTATTTTGTT
1 ATTTATTTTATT
51192799 A-TTATTTTA
1 ATTTATTTTA
51192808 AAAGAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (12 bp):
ATTTATTTTATT
Found at i:51194488 original size:20 final size:20
Alignment explanation
Indices: 51194463--51194500 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
51194453 ACACTTATTC
51194463 CATATGCATATCATTCAAGT
1 CATATGCATATCATTCAAGT
51194483 CATATGCATATCATTCAA
1 CATATGCATATCATTCAA
51194501 CCATAGTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (20 bp):
CATATGCATATCATTCAAGT
Found at i:51195913 original size:33 final size:35
Alignment explanation
Indices: 51195858--51195922 Score: 80
Period size: 33 Copynumber: 1.9 Consensus size: 35
51195848 ATTTGTAGTG
* **
51195858 CCAGTTATGGTCTTTTCATTAAA-A-TGCCATAGC
1 CCAGCTATGGTCTTACCATTAAACATTGCCATAGC
*
51195891 CCAGCTATGGTCTTACCTTTAAACATTGCCAT
1 CCAGCTATGGTCTTACCATTAAACATTGCCAT
51195923 GGTCCAACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
33 19 0.73
34 1 0.04
35 6 0.23
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (35 bp):
CCAGCTATGGTCTTACCATTAAACATTGCCATAGC
Found at i:51196754 original size:7 final size:7
Alignment explanation
Indices: 51196742--51196792 Score: 56
Period size: 7 Copynumber: 7.6 Consensus size: 7
51196732 CCGTGGCTTC
51196742 CTTTCTT
1 CTTTCTT
51196749 CTTTCTT
1 CTTTCTT
51196756 CTTTC-T
1 CTTTCTT
51196762 CTTT-TT
1 CTTTCTT
51196768 CTTT-TCT
1 CTTTCT-T
51196775 CTTTCTT
1 CTTTCTT
51196782 -TTTCTTT
1 CTTTC-TT
51196789 CTTT
1 CTTT
51196793 TTTGTTTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
6 15 0.38
7 20 0.51
8 4 0.10
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (7 bp):
CTTTCTT
Found at i:51196770 original size:6 final size:6
Alignment explanation
Indices: 51196742--51196788 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
51196732 CCGTGGCTTC
* *
51196742 CTTTCTT CTTTCTT CTTTCT CTTTTT C-TTTT CTCTTT CTTTTT CTTT
1 CTTT-TT CTTT-TT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
51196789 CTTTTTTGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
5 5 0.14
6 19 0.54
7 11 0.31
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (6 bp):
CTTTTT
Found at i:51196773 original size:13 final size:13
Alignment explanation
Indices: 51196742--51196786 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
51196732 CCGTGGCTTC
51196742 CTTTCTTCTTTCTT
1 CTTTC-TCTTTCTT
51196756 CTTTCTCTTT-TT
1 CTTTCTCTTTCTT
51196768 CTTTTCTCTTTCTT
1 C-TTTCTCTTTCTT
51196782 -TTTCT
1 CTTTCT
51196787 TTCTTTTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 8 0.28
13 14 0.48
14 7 0.24
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
CTTTCTCTTTCTT
Found at i:51196794 original size:11 final size:11
Alignment explanation
Indices: 51196742--51196795 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 11
51196732 CCGTGGCTTC
*
51196742 CTTTCTTCTTT
1 CTTTCTTTTTT
51196753 C-TTCTTTCTCTT
1 CTTTCTTT-T-TT
*
51196765 -TTTCTTTTCT
1 CTTTCTTTTTT
51196775 CTTTC-TTTTT
1 CTTTCTTTTTT
51196785 CTTTCTTTTTT
1 CTTTCTTTTTT
51196796 GTTTGTTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
10 15 0.43
11 12 0.34
12 8 0.23
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (11 bp):
CTTTCTTTTTT
Found at i:51196812 original size:5 final size:5
Alignment explanation
Indices: 51196802--51196853 Score: 104
Period size: 5 Copynumber: 10.4 Consensus size: 5
51196792 TTTTGTTTGT
51196802 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
51196852 TA
1 TA
51196854 CACTTAAACA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:51196889 original size:14 final size:14
Alignment explanation
Indices: 51196870--51196896 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51196860 AACATTAAGA
51196870 ATATATATAATAAT
1 ATATATATAATAAT
51196884 ATATATATAATAA
1 ATATATATAATAA
51196897 AGTTATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATATATAATAAT
Found at i:51202461 original size:11 final size:11
Alignment explanation
Indices: 51202445--51202521 Score: 73
Period size: 11 Copynumber: 6.9 Consensus size: 11
51202435 TTTTGCAGGT
*
51202445 TTTTGGTGTTA
1 TTTTGGTGTTG
51202456 TTTTGGTGTTG
1 TTTTGGTGTTG
* *
51202467 TTGGTGATGTTG
1 TT-TTGGTGTTG
*
51202479 TTTTGGTGCTG
1 TTTTGGTGTTG
* * *
51202490 TTTTGTTGCTA
1 TTTTGGTGTTG
*
51202501 TTTTGGTGCTG
1 TTTTGGTGTTG
51202512 TTTTGGTGTT
1 TTTTGGTGTT
51202522 ACTTTTTGTG
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
11 45 0.83
12 9 0.17
ACGTcount: A:0.04, C:0.04, G:0.32, T:0.60
Consensus pattern (11 bp):
TTTTGGTGTTG
Found at i:51202536 original size:23 final size:22
Alignment explanation
Indices: 51202445--51202538 Score: 98
Period size: 23 Copynumber: 4.2 Consensus size: 22
51202435 TTTTGCAGGT
*
51202445 TTTTGGTGTTATTTTGGTGTTG
1 TTTTGGTGTTATTTTGGTGCTG
* * *
51202467 TTGGTGATGTTGTTTTGGTGCTG
1 TT-TTGGTGTTATTTTGGTGCTG
* *
51202490 TTTTGTTGCTATTTTGGTGCTG
1 TTTTGGTGTTATTTTGGTGCTG
* *
51202512 TTTTGGTGTTACTTTTTGTGGTG
1 TTTTGGTGTTA-TTTTGGTGCTG
51202535 TTTT
1 TTTT
51202539 ATTGTTCTTT
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
22 27 0.47
23 31 0.53
ACGTcount: A:0.04, C:0.04, G:0.31, T:0.61
Consensus pattern (22 bp):
TTTTGGTGTTATTTTGGTGCTG
Found at i:51202787 original size:26 final size:25
Alignment explanation
Indices: 51202748--51202797 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
51202738 TTTGTTTTAA
* * *
51202748 TATTTGTTTTTTATGTTTTTAAATG
1 TATTTGTTTATTATATTTTAAAATG
51202773 TATTTGATTTATTATATTTTAAAAT
1 TATTTG-TTTATTATATTTTAAAAT
51202798 TTTTTATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (25 bp):
TATTTGTTTATTATATTTTAAAATG
Found at i:51204463 original size:11 final size:11
Alignment explanation
Indices: 51204442--51204488 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
51204432 GTGTAGTTTA
51204442 TTTATTGTTATT
1 TTTA-TGTTATT
51204454 TTTATGTTATT
1 TTTATGTTATT
51204465 TTTAAT-TTATT
1 TTT-ATGTTATT
* *
51204476 TTAAAGTTATT
1 TTTATGTTATT
51204487 TT
1 TT
51204489 CTTAGTTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 1 0.03
11 24 0.77
12 6 0.19
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.70
Consensus pattern (11 bp):
TTTATGTTATT
Found at i:51208217 original size:23 final size:23
Alignment explanation
Indices: 51208191--51208261 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
51208181 ATTAAATAAA
51208191 TACAAAGTTTATCTAAAATTTGT
1 TACAAAGTTTATCTAAAATTTGT
*
51208214 TAC-AA-TTAATCT--AATTTGAAT
1 TACAAAGTTTATCTAAAATTTG--T
*
51208235 TACAAAG-TTAGTCTAAAGTTTGT
1 TACAAAGTTTA-TCTAAAATTTGT
51208258 TACA
1 TACA
51208262 TTTATATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 14
0.69 0.05 0.25
Matches are distributed among these distances:
19 6 0.16
21 10 0.26
22 6 0.16
23 11 0.29
25 5 0.13
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (23 bp):
TACAAAGTTTATCTAAAATTTGT
Found at i:51208225 original size:21 final size:22
Alignment explanation
Indices: 51208195--51208261 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 22
51208185 AATAAATACA
*
51208195 AAGTTTATCTAAAATTTGTTAC
1 AAGTTAATCTAAAATTTGTTAC
51208217 AA-TTAATCT--AATTTGAATTAC
1 AAGTTAATCTAAAATTTG--TTAC
* *
51208238 AAAGTTAGTCTAAAGTTTGTTAC
1 -AAGTTAATCTAAAATTTGTTAC
51208261 A
1 A
51208262 TTTATATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
19 6 0.17
21 10 0.28
22 5 0.14
23 10 0.28
25 5 0.14
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (22 bp):
AAGTTAATCTAAAATTTGTTAC
Found at i:51217639 original size:109 final size:109
Alignment explanation
Indices: 51217343--51217736 Score: 528
Period size: 110 Copynumber: 3.6 Consensus size: 109
51217333 CAAATAAATC
* * * *
51217343 AAAAACAAATAAAATTACATT-ATAACAAATCACAATGCACATTAAACT-AA-ACAAATAATTTA
1 AAAAACAAA-AAAATTACATTCATAAAAAATCACAA--AACACTAAACTAAACACAAACAATTTA
*
51217405 TAAACTAATCATAAATTACTAACAAAATAACTTTAAAATAA-TTTAA
63 TAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTTTAA
* * * * * * *
51217451 AGAATACAAAAAAAAT-CATTTATAACAAGTCCCAATAAACACTGAACTAAACACAAACAATTTA
1 A-AAAACAAAAAAATTACATTCATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTTA
*
51217515 TAACCTAATCATAAATTACTAACAAAATAACTATAAAATAATTTTAA
63 TAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTTTAA
*
51217562 AAAAACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAAATAAACACAAACAATTTATAA
1 AAAAACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
51217627 CCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTTTTAA
66 CCTAATCATAAATTACTAACAAAATAACTTTAAAATAA-TTTTAA
* * * *
51217672 AAAAATAAAAAATTTATATTCATAAAAAATCACAAAACACTAAACTAAACACAAACGATTTATAA
1 AAAAACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
51217737 TAATTAATAA
Statistics
Matches: 253, Mismatches: 24, Indels: 16
0.86 0.08 0.05
Matches are distributed among these distances:
107 4 0.02
108 24 0.09
109 76 0.30
110 130 0.51
111 19 0.08
ACGTcount: A:0.59, C:0.14, G:0.01, T:0.26
Consensus pattern (109 bp):
AAAAACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
CCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTTTAA
Found at i:51219463 original size:22 final size:22
Alignment explanation
Indices: 51219421--51219464 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
51219411 AAATATTTTC
*
51219421 TTTTAAATCTATTATATATATA
1 TTTTAAATCTATTATACATATA
*
51219443 TTTTAAAATTTATT-TACATATA
1 TTTT-AAATCTATTATACATATA
51219465 ATTTGTTTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTTAAATCTATTATACATATA
Found at i:51222233 original size:17 final size:17
Alignment explanation
Indices: 51222207--51222257 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
51222197 GCAAATGGGC
51222207 CGTGTGGGCCACACGGG
1 CGTGTGGGCCACACGGG
*
51222224 CGTGTAGGCCACACGGG
1 CGTGTGGGCCACACGGG
*
51222241 CTTGTGGGCCCACACGG
1 CGTGTGGG-CCACACGG
51222258 TGAATCACAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 22 0.73
18 8 0.27
ACGTcount: A:0.14, C:0.31, G:0.41, T:0.14
Consensus pattern (17 bp):
CGTGTGGGCCACACGGG
Found at i:51222771 original size:40 final size:40
Alignment explanation
Indices: 51222698--51222773 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
51222688 CGGTACCTTA
* * *
51222698 TGGTGTGTAGGGTTGGATGGGTTGATTAAATCCCCATACT
1 TGGTGTATAGGGTTGGATGGATCGATTAAATCCCCATACT
* **
51222738 TGGTGTATAGGGTTGGGTGGATCGATTCTATCCCCA
1 TGGTGTATAGGGTTGGATGGATCGATTAAATCCCCA
51222774 CATGGTGTGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.18, C:0.14, G:0.33, T:0.34
Consensus pattern (40 bp):
TGGTGTATAGGGTTGGATGGATCGATTAAATCCCCATACT
Found at i:51222780 original size:38 final size:39
Alignment explanation
Indices: 51222697--51222792 Score: 97
Period size: 40 Copynumber: 2.5 Consensus size: 39
51222687 GCGGTACCTT
* * *
51222697 ATGGTGTGTAGGGTTGGATGGGTTGATTAAATCCCCATAC
1 ATGGTGTATAGGGTTGGATGGATCGATTAAATCCCCA-AC
* * **
51222737 TTGGTGTATAGGGTTGGGTGGATCGATTCTATCCCC-AC
1 ATGGTGTATAGGGTTGGATGGATCGATTAAATCCCCAAC
51222775 ATGGTGTGAT-GGGTTGGA
1 ATGGTGT-ATAGGGTTGGA
51222793 CGGAGATGGT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
38 15 0.33
39 2 0.04
40 29 0.63
ACGTcount: A:0.19, C:0.12, G:0.35, T:0.33
Consensus pattern (39 bp):
ATGGTGTATAGGGTTGGATGGATCGATTAAATCCCCAAC
Found at i:51224976 original size:20 final size:20
Alignment explanation
Indices: 51224948--51224996 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
51224938 AAAGACATTT
*
51224948 TATCGATACCTGGTAAAAGG
1 TATCAATACCTGGTAAAAGG
* * **
51224968 TATTAATACTTTTTAAAAGG
1 TATCAATACCTGGTAAAAGG
51224988 TATCAATAC
1 TATCAATAC
51224997 TTTTTATAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (20 bp):
TATCAATACCTGGTAAAAGG
Found at i:51224997 original size:20 final size:20
Alignment explanation
Indices: 51224961--51225002 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
51224951 CGATACCTGG
*
51224961 TAAAAGGTATTAATACTTTT
1 TAAAAGGTATCAATACTTTT
51224981 TAAAAGGTATCAATACTTTT
1 TAAAAGGTATCAATACTTTT
51225001 TA
1 TA
51225003 TAATTGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (20 bp):
TAAAAGGTATCAATACTTTT
Found at i:51225050 original size:18 final size:18
Alignment explanation
Indices: 51225029--51225063 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51225019 CGTCAGAATA
*
51225029 CAAAAATGGTATTGATAT
1 CAAAAATGGTATCGATAT
*
51225047 CAAAGATGGTATCGATA
1 CAAAAATGGTATCGATA
51225064 CTTTTTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.29
Consensus pattern (18 bp):
CAAAAATGGTATCGATAT
Found at i:51225243 original size:20 final size:20
Alignment explanation
Indices: 51225218--51225260 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
51225208 GGGAGTAATT
51225218 TTTCAATTGA-TTTAAAAATG
1 TTTCAATTGAGTTTAAAAA-G
51225238 TTTCAATTGAGTTTAAAAAG
1 TTTCAATTGAGTTTAAAAAG
51225258 TTT
1 TTT
51225261 AAACCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCAATTGAGTTTAAAAAG
Found at i:51225399 original size:16 final size:16
Alignment explanation
Indices: 51225361--51225391 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51225351 TTTATAATTT
*
51225361 CTTTGTTCAAAAACAA
1 CTTTATTCAAAAACAA
51225377 CTTTATTCAAAAACA
1 CTTTATTCAAAAACA
51225392 TTTTTATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.32
Consensus pattern (16 bp):
CTTTATTCAAAAACAA
Found at i:51236105 original size:28 final size:29
Alignment explanation
Indices: 51236030--51236105 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
51236020 AAAAATATTT
*
51236030 AAAATATTTTTATATTTTTATACTTTTTTA
1 AAAATA-TTTTATATTTTTTTACTTTTTTA
* *
51236060 AATA-ATTTTA-ATGATTTTTA-TTTTTTA
1 AAAATATTTTATAT-TTTTTTACTTTTTTA
51236087 AAAATATTTTATATTTTTT
1 AAAATATTTTATATTTTTT
51236106 GAAATTTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
27 12 0.32
28 20 0.53
29 3 0.08
30 3 0.08
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (29 bp):
AAAATATTTTATATTTTTTTACTTTTTTA
Found at i:51238288 original size:39 final size:39
Alignment explanation
Indices: 51238234--51238314 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
51238224 ATTATATTAT
51238234 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
* *
51238273 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
51238312 CAG
1 CAG
51238315 TGTCTTGCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (39 bp):
CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
Found at i:51241277 original size:25 final size:25
Alignment explanation
Indices: 51241248--51241364 Score: 104
Period size: 25 Copynumber: 4.8 Consensus size: 25
51241238 ATTCTATTTG
51241248 GCCTTTGTGGTGTATTTTGTATGTT
1 GCCTTTGTGGTGTATTTTGTATGTT
* *
51241273 GCCTTTGTGGCGTACTTTG-ATAG-T
1 GCCTTTGTGGTGTATTTTGTAT-GTT
51241297 --CTTTGTGGTGTA-TTT-TAT-TT
1 GCCTTTGTGGTGTATTTTGTATGTT
* **
51241317 AACCTTTGTGGCATATTTTGTATGTT
1 -GCCTTTGTGGTGTATTTTGTATGTT
*
51241343 GCATTTGTGGTGTATTCTTGTA
1 GCCTTTGTGGTGTATT-TTGTA
51241365 ACAACCCAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
20 1 0.01
21 5 0.07
22 11 0.15
23 10 0.14
24 6 0.08
25 33 0.45
26 7 0.10
ACGTcount: A:0.13, C:0.10, G:0.25, T:0.52
Consensus pattern (25 bp):
GCCTTTGTGGTGTATTTTGTATGTT
Found at i:51241850 original size:23 final size:24
Alignment explanation
Indices: 51241794--51241857 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
51241784 GATTTAATTA
*
51241794 TATAAATATATAAATTGATTATAAG
1 TATAAATAT-TAAATTAATTATAAG
* *
51241819 TAT-ATTATTAAATTAATTAT-AT
1 TATAAATATTAAATTAATTATAAG
*
51241841 TATAAATATTATATTAA
1 TATAAATATTAAATTAA
51241858 GAAATAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 4 0.12
23 22 0.67
24 4 0.12
25 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (24 bp):
TATAAATATTAAATTAATTATAAG
Found at i:51245507 original size:21 final size:20
Alignment explanation
Indices: 51245450--51245516 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 20
51245440 TGAATTGAAG
*
51245450 CTCATGAGAGCTAAACGGAAA
1 CTCAT-AGAGCTGAACGGAAA
* * * * *
51245471 CCCGTAGGGTTGAACGGAAG
1 CTCATAGAGCTGAACGGAAA
*
51245491 CTCATAAGAGCTGAACGAAAA
1 CTCAT-AGAGCTGAACGGAAA
51245512 CTCAT
1 CTCAT
51245517 GAGGGTTAAA
Statistics
Matches: 33, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.16
Consensus pattern (20 bp):
CTCATAGAGCTGAACGGAAA
Found at i:51248588 original size:42 final size:42
Alignment explanation
Indices: 51248526--51248625 Score: 141
Period size: 42 Copynumber: 2.4 Consensus size: 42
51248516 GCCTGAAGGC
**
51248526 TGAACAGAAGCTCATGAGAGCTA-AAAAAAAACCCATAAGGGT
1 TGAACAGAAGCTCAAAAGAGC-AGAAAAAAAACCCATAAGGGT
* *
51248568 TGAACAGAAGCTCAAAAGAGCAGAACAGAAACCCATAAGGGT
1 TGAACAGAAGCTCAAAAGAGCAGAAAAAAAACCCATAAGGGT
51248610 T-AACAGAAGCTCAAAA
1 TGAACAGAAGCTCAAAA
51248626 AAACTGAACA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
41 16 0.30
42 37 0.70
ACGTcount: A:0.49, C:0.18, G:0.21, T:0.12
Consensus pattern (42 bp):
TGAACAGAAGCTCAAAAGAGCAGAAAAAAAACCCATAAGGGT
Found at i:51248635 original size:41 final size:42
Alignment explanation
Indices: 51248554--51248635 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 42
51248544 AGCTAAAAAA
* *
51248554 AAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCAGAACAG
1 AAACCCATAAGGGTTGAACAGAAGCTCAAAAAAACAGAACAG
*
51248596 AAACCCATAAGGGTT-AACAGAAGCTCAAAAAAACTGAACA
1 AAACCCATAAGGGTTGAACAGAAGCTCAAAAAAACAGAACA
51248636 AAAGCTCGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
41 22 0.59
42 15 0.41
ACGTcount: A:0.50, C:0.20, G:0.20, T:0.11
Consensus pattern (42 bp):
AAACCCATAAGGGTTGAACAGAAGCTCAAAAAAACAGAACAG
Found at i:51248656 original size:21 final size:21
Alignment explanation
Indices: 51248632--51248735 Score: 88
Period size: 21 Copynumber: 5.0 Consensus size: 21
51248622 AAAAAAACTG
*
51248632 AACAAAAGCTCGTGAGAGCTT
1 AACAAAAGCTCGTAAGAGCTT
* *
51248653 AACAGAAA-TTCTTAAGAG-TT
1 AACA-AAAGCTCGTAAGAGCTT
51248673 GAACAAAAGCTCGTAAGAGCTT
1 -AACAAAAGCTCGTAAGAGCTT
* * *
51248695 AACAAAAACTCATAAGA-ATT
1 AACAAAAGCTCGTAAGAGCTT
* *
51248715 AAACAGAAGCTTGTAAGAGCT
1 -AACAAAAGCTCGTAAGAGCT
51248736 AAATAGAAAG
Statistics
Matches: 64, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
20 7 0.11
21 51 0.80
22 6 0.09
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.21
Consensus pattern (21 bp):
AACAAAAGCTCGTAAGAGCTT
Found at i:51248674 original size:104 final size:105
Alignment explanation
Indices: 51248525--51248725 Score: 233
Period size: 104 Copynumber: 1.9 Consensus size: 105
51248515 AGCCTGAAGG
* * *
51248525 CTGAACAGAAGCTCATGAGAGCTAAAAAAAAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCA
1 CTGAACAAAAGCTCATGAGAGCTAAAAAAAAACCCATAAGAGTTGAACAAAAGCTCAAAAGAGCA
* **
51248590 GAACAGAAACCCATAAGGGTT-AACAGAAGCTCAAAAAAA
66 GAACAAAAACCCATAAGAATTAAACAGAAGCTCAAAAAAA
* * * * ** * ** *
51248629 CTGAACAAAAGCTCGTGAGAGCTTAACAGAAATTCTTAAGAGTTGAACAAAAGCTCGTAAGAGCT
1 CTGAACAAAAGCTCATGAGAGCTAAAAAAAAACCCATAAGAGTTGAACAAAAGCTCAAAAGAGCA
* *
51248694 TAACAAAAACTCATAAGAATTAAACAGAAGCT
66 GAACAAAAACCCATAAGAATTAAACAGAAGCT
51248726 TGTAAGAGCT
Statistics
Matches: 78, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
104 68 0.87
105 10 0.13
ACGTcount: A:0.48, C:0.17, G:0.19, T:0.16
Consensus pattern (105 bp):
CTGAACAAAAGCTCATGAGAGCTAAAAAAAAACCCATAAGAGTTGAACAAAAGCTCAAAAGAGCA
GAACAAAAACCCATAAGAATTAAACAGAAGCTCAAAAAAA
Found at i:51248676 original size:42 final size:42
Alignment explanation
Indices: 51248609--51248744 Score: 146
Period size: 42 Copynumber: 3.2 Consensus size: 42
51248599 CCCATAAGGG
* * * * *
51248609 TTAACAGAAGCTCAAAAAAACTGAACAAAAGCTCGTGAGAGC
1 TTAACAGAAACTCATAAGAATTGAACAAAAGCTCGTAAGAGC
* * *
51248651 TTAACAGAAATTCTTAAGAGTTGAACAAAAGCTCGTAAGAGC
1 TTAACAGAAACTCATAAGAATTGAACAAAAGCTCGTAAGAGC
* * * *
51248693 TTAACAAAAACTCATAAGAATTAAACAGAAGCTTGTAAGAGC
1 TTAACAGAAACTCATAAGAATTGAACAAAAGCTCGTAAGAGC
* *
51248735 TAAATAGAAA
1 TTAACAGAAA
51248745 GTAAAACACA
Statistics
Matches: 76, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (42 bp):
TTAACAGAAACTCATAAGAATTGAACAAAAGCTCGTAAGAGC
Found at i:51250848 original size:39 final size:39
Alignment explanation
Indices: 51250805--51250894 Score: 171
Period size: 39 Copynumber: 2.3 Consensus size: 39
51250795 AATAGAAATA
51250805 TGGTGATTATTCGGGCTAAGTGCCTAGCAAGCTTTGTGC
1 TGGTGATTATTCGGGCTAAGTGCCTAGCAAGCTTTGTGC
51250844 TGGTGATTATTCGGGCTAAGTGCCTAGCAAGCTTTGTGC
1 TGGTGATTATTCGGGCTAAGTGCCTAGCAAGCTTTGTGC
*
51250883 CGGTGATTATTC
1 TGGTGATTATTC
51250895 ATGCTTTGTG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.34
Consensus pattern (39 bp):
TGGTGATTATTCGGGCTAAGTGCCTAGCAAGCTTTGTGC
Found at i:51252296 original size:22 final size:23
Alignment explanation
Indices: 51252257--51252306 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
51252247 GGGTGTTACA
51252257 ATTCTGATAGCCTTTTGTGACAT
1 ATTCTGATAGCCTTTTGTGACAT
* *
51252280 ATTCTGATAG-CTTTTGTGGCGT
1 ATTCTGATAGCCTTTTGTGACAT
51252302 ATTCT
1 ATTCT
51252307 ATATGTTGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 15 0.60
23 10 0.40
ACGTcount: A:0.18, C:0.16, G:0.20, T:0.46
Consensus pattern (23 bp):
ATTCTGATAGCCTTTTGTGACAT
Found at i:51257108 original size:23 final size:24
Alignment explanation
Indices: 51257072--51257117 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
51257062 AATTTTATAA
51257072 AAATAATTATTTATTATAATAATT
1 AAATAATTATTTATTATAATAATT
*
51257096 AAATAA-TATTTATTTTAATAAT
1 AAATAATTATTTATTATAATAAT
51257118 ATTCAGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
AAATAATTATTTATTATAATAATT
Found at i:51257116 original size:26 final size:26
Alignment explanation
Indices: 51257069--51257118 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
51257059 CTGAATTTTA
*
51257069 TAAAAATAATTATTTATTATAATAAT
1 TAAAAATAATTATTTATAATAATAAT
*
51257095 TAAATAATATTTATTT-TAATAATA
1 TAAA-AATAATTATTTATAATAATA
51257119 TTCAGTGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TAAAAATAATTATTTATAATAATAAT
Found at i:51267163 original size:9 final size:9
Alignment explanation
Indices: 51267144--51267187 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
51267134 TATGTAATAA
51267144 AAAGCTTGAG
1 AAAG-TTGAG
*
51267154 AGAGTTGAG
1 AAAGTTGAG
51267163 AAAGTGTGAG
1 AAAGT-TGAG
*
51267173 AGAGTTGAG
1 AAAGTTGAG
51267182 AAAGTT
1 AAAGTT
51267188 TGAAGGAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 18 0.62
10 11 0.38
ACGTcount: A:0.39, C:0.02, G:0.36, T:0.23
Consensus pattern (9 bp):
AAAGTTGAG
Found at i:51267172 original size:19 final size:19
Alignment explanation
Indices: 51267150--51267186 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
51267140 ATAAAAAGCT
51267150 TGAGAGAGTTGAGAAAGTG
1 TGAGAGAGTTGAGAAAGTG
51267169 TGAGAGAGTTGAGAAAGT
1 TGAGAGAGTTGAGAAAGT
51267187 TTGAAGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.41, T:0.22
Consensus pattern (19 bp):
TGAGAGAGTTGAGAAAGTG
Found at i:51268109 original size:56 final size:56
Alignment explanation
Indices: 51267963--51268111 Score: 230
Period size: 56 Copynumber: 2.7 Consensus size: 56
51267953 CGTAGAAATT
*
51267963 AAATTGCTAAAAGATAATAT-CTCATAATAATATCATATAATATCCCATTAGGAATC
1 AAATTGCTAAAAGATAATATCCT-ATAATAATATCCTATAATATCCCATTAGGAATC
* * *
51268019 AAATTGCTAAGAGATAATATCAC-AGAATAATATCCTATAATATCCTATTAGGAATC
1 AAATTGCTAAAAGATAATATC-CTATAATAATATCCTATAATATCCCATTAGGAATC
51268075 AAATTGCTAAAAGATAATATCCTATAATAATATCCTA
1 AAATTGCTAAAAGATAATATCCTATAATAATATCCTA
51268112 ACACCCCCCT
Statistics
Matches: 84, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
55 1 0.01
56 82 0.98
58 1 0.01
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.32
Consensus pattern (56 bp):
AAATTGCTAAAAGATAATATCCTATAATAATATCCTATAATATCCCATTAGGAATC
Found at i:51270330 original size:141 final size:141
Alignment explanation
Indices: 51270076--51270357 Score: 564
Period size: 141 Copynumber: 2.0 Consensus size: 141
51270066 CAAAAAATTT
51270076 TACATCGCGAGACACAAAGAACTTAAAATTAATATCATATAATTACTAACCCTTTTTACCAAAAG
1 TACATCGCGAGACACAAAGAACTTAAAATTAATATCATATAATTACTAACCCTTTTTACCAAAAG
51270141 GGTACCCAAAAAAAAACACACTTTTGACTTCTATTGGCAAACTTATCACCCTTAGAATGTTGGTT
66 GGTACCCAAAAAAAAACACACTTTTGACTTCTATTGGCAAACTTATCACCCTTAGAATGTTGGTT
51270206 ATGAGCAAAAC
131 ATGAGCAAAAC
51270217 TACATCGCGAGACACAAAGAACTTAAAATTAATATCATATAATTACTAACCCTTTTTACCAAAAG
1 TACATCGCGAGACACAAAGAACTTAAAATTAATATCATATAATTACTAACCCTTTTTACCAAAAG
51270282 GGTACCCAAAAAAAAACACACTTTTGACTTCTATTGGCAAACTTATCACCCTTAGAATGTTGGTT
66 GGTACCCAAAAAAAAACACACTTTTGACTTCTATTGGCAAACTTATCACCCTTAGAATGTTGGTT
51270347 ATGAGCAAAAC
131 ATGAGCAAAAC
51270358 ATAAGCAACC
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (141 bp):
TACATCGCGAGACACAAAGAACTTAAAATTAATATCATATAATTACTAACCCTTTTTACCAAAAG
GGTACCCAAAAAAAAACACACTTTTGACTTCTATTGGCAAACTTATCACCCTTAGAATGTTGGTT
ATGAGCAAAAC
Done.