Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 158 of 276
Found at i:51295576 original size:43 final size:43
Alignment explanation
Indices: 51295524--51295615 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 43
51295514 GACACGCGCG
* * *
51295524 TGTGCCTCAATCGTGTGTGATACACGGCTAAG-CGACACGGCCA
1 TGTGTCTCAACCGTGTGTGACACACGGC-AAGCCGACACGGCCA
**
51295567 TGTGTCTCAACCGTGTGTGACACACGGCCCGCCGACACGGCCA
1 TGTGTCTCAACCGTGTGTGACACACGGCAAGCCGACACGGCCA
51295610 TGTGTC
1 TGTGTC
51295616 CCCTGTAGCT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.02
43 42 0.98
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.21
Consensus pattern (43 bp):
TGTGTCTCAACCGTGTGTGACACACGGCAAGCCGACACGGCCA
Found at i:51297171 original size:48 final size:48
Alignment explanation
Indices: 51297059--51297191 Score: 137
Period size: 48 Copynumber: 2.8 Consensus size: 48
51297049 ACATTTGGGT
* * * * *
51297059 GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCAGCAAC
* * * *
51297107 GATATGAGAGCCAGTGTAAGACCGTGTTTGGAACATGGCATCAGCAAT
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCAGCAAC
51297155 G-TAATGCA-AGCTAGTGTAAGACCATGTCTAGG-ACATG
1 GAT-ATG-AGAGCTAGTGTAAGACCATGTCT-GGAACATG
51297192 TTTGGAACAT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
47 1 0.01
48 66 0.94
49 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
GATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCAGCAAC
Found at i:51300050 original size:32 final size:32
Alignment explanation
Indices: 51300014--51300174 Score: 313
Period size: 32 Copynumber: 5.0 Consensus size: 32
51300004 AAGTTTCAAG
*
51300014 TAATGAATTCGGCTTTGACTAAAGTATTACAT
1 TAATGAAATCGGCTTTGACTAAAGTATTACAT
51300046 TAATGAAATCGGCTTTGACTAAAGTATTACAT
1 TAATGAAATCGGCTTTGACTAAAGTATTACAT
51300078 TAATGAAATCGGCTTTGACTAAAGTATTACAT
1 TAATGAAATCGGCTTTGACTAAAGTATTACAT
51300110 TAATGAAATCGGCTTTGACTAAAGTATTACAT
1 TAATGAAATCGGCTTTGACTAAAGTATTACAT
51300142 TAATGAAATCGGCTTTGACTAAAGTATTACAT
1 TAATGAAATCGGCTTTGACTAAAGTATTACAT
51300174 T
1 T
51300175 CACATAGCTA
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 128 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (32 bp):
TAATGAAATCGGCTTTGACTAAAGTATTACAT
Found at i:51312001 original size:47 final size:48
Alignment explanation
Indices: 51311925--51312196 Score: 206
Period size: 47 Copynumber: 5.8 Consensus size: 48
51311915 GGGGTAAGGT
51311925 GCCGATTCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGA-TCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * *
51311972 GTCGATACCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGAT-CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * * * *
51312020 GCCGATGCATGTCCCCGACAT-GTCTTACCCTGGCTTAT-GTCTC-AA
1 GCCGATCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * * * * *
51312065 GGCCGATGCATGTCCTAGACAT-GTCTTACACTAGCAC-TCGTCTCGAT
1 -GCCGATCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * * * * **
51312112 GTCGATGTCATGTCCCAAACATGGTCTTACACTGACTC-TCATAAT-GTG
1 GCCGAT-CCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCGAA
* * *
51312160 GCTGATGCATGTCCCAGACAT-GTCTTACACTAGCTCA
1 GCCGATCCATGTCCCAGACATGGTCTTACACTGGCTCA
51312197 CAATAACCCA
Statistics
Matches: 180, Mismatches: 34, Indels: 22
0.76 0.14 0.09
Matches are distributed among these distances:
45 2 0.01
46 72 0.40
47 79 0.44
48 26 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
Found at i:51317094 original size:10 final size:9
Alignment explanation
Indices: 51317078--51317105 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
51317068 CGAATTTTTT
51317078 TAAAAAAAA
1 TAAAAAAAA
51317087 TAAAAAAAA
1 TAAAAAAAA
51317096 TAAAAAAAA
1 TAAAAAAAA
51317105 T
1 T
51317106 GTGATAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:51319099 original size:47 final size:47
Alignment explanation
Indices: 51319041--51319153 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
51319031 CAGCCAAGAC
* * *
51319041 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAA
* * * * *
51319088 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAA
* *
51319135 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
51319154 TCCCGAAGGG
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAA
Found at i:51319312 original size:47 final size:47
Alignment explanation
Indices: 51319243--51319485 Score: 387
Period size: 47 Copynumber: 5.2 Consensus size: 47
51319233 AATGTGAAAG
51319243 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
51319290 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
51319337 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
*
51319384 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
* * * * * * * * **
51319431 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
51319478 GTGATAAG
1 GTGATAAG
51319486 TCCCGAAGGG
Statistics
Matches: 184, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 184 1.00
ACGTcount: A:0.30, C:0.09, G:0.33, T:0.28
Consensus pattern (47 bp):
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
Found at i:51319660 original size:37 final size:37
Alignment explanation
Indices: 51319608--51319682 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 37
51319598 GCTCTAAAGG
*
51319608 CCCGATGACTACGTGTGG-GAATTTTGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAG-ATTTTGTCCGGGTAAGA
*
51319645 CCCGATAACTTCGTGTGGAGATTTTGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGATTTTGTCCGGGTAAGA
51319682 C
1 C
51319683 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 34 0.97
38 1 0.03
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTTTGTCCGGGTAAGA
Found at i:51322123 original size:9 final size:8
Alignment explanation
Indices: 51322105--51322139 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
51322095 GAAATGAATG
51322105 AAAAAT-A
1 AAAAATAA
51322112 AAAAAT-A
1 AAAAATAA
51322119 AAAAATAA
1 AAAAATAA
51322127 AAAAATAA
1 AAAAATAA
51322135 AAAAA
1 AAAAA
51322140 GTAGCAACGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 13 0.48
8 14 0.52
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAATAA
Found at i:51322129 original size:15 final size:14
Alignment explanation
Indices: 51322105--51322138 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
51322095 GAAATGAATG
51322105 AAAAATAAAAAATA
1 AAAAATAAAAAATA
51322119 AAAAATAAAAAAATA
1 AAAAAT-AAAAAATA
51322134 AAAAA
1 AAAAA
51322139 AGTAGCAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAATAAAAAATA
Found at i:51322139 original size:8 final size:7
Alignment explanation
Indices: 51322105--51322138 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
51322095 GAAATGAATG
51322105 AAAAATA
1 AAAAATA
51322112 AAAAATA
1 AAAAATA
51322119 AAAAATAA
1 AAAAAT-A
51322127 AAAAATA
1 AAAAATA
51322134 AAAAA
1 AAAAA
51322139 AGTAGCAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:51324093 original size:13 final size:13
Alignment explanation
Indices: 51324075--51324101 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51324065 TCAAACATCA
51324075 ATGCCCCGTTTTG
1 ATGCCCCGTTTTG
51324088 ATGCCCCGTTTTG
1 ATGCCCCGTTTTG
51324101 A
1 A
51324102 CTTCTCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.11, C:0.30, G:0.22, T:0.37
Consensus pattern (13 bp):
ATGCCCCGTTTTG
Found at i:51326913 original size:31 final size:31
Alignment explanation
Indices: 51326872--51326978 Score: 121
Period size: 31 Copynumber: 3.5 Consensus size: 31
51326862 TTAGTTTTAA
*
51326872 AGATTAAATTAAATTTTTACTTTAAATGGAG
1 AGATTAAATTAAATTTTTAATTTAAATGGAG
* * ** *
51326903 AGATTTAATTAAATTTTAAAAATAAAT-TA-
1 AGATTAAATTAAATTTTTAATTTAAATGGAG
* *
51326932 A-ATTAAATTAAAATTTTATTTTAAATGGAG
1 AGATTAAATTAAATTTTTAATTTAAATGGAG
51326962 AGATTAAATTAAATTTT
1 AGATTAAATTAAATTTT
51326979 AAAAATAAAT
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
28 19 0.32
29 2 0.03
30 2 0.03
31 36 0.61
ACGTcount: A:0.48, C:0.01, G:0.08, T:0.43
Consensus pattern (31 bp):
AGATTAAATTAAATTTTTAATTTAAATGGAG
Found at i:51326938 original size:59 final size:59
Alignment explanation
Indices: 51326874--51327001 Score: 213
Period size: 59 Copynumber: 2.2 Consensus size: 59
51326864 AGTTTTAAAG
* *
51326874 ATTAAATTAAATTTTTACTTTAAATGGAGAGATTTAATTAAATTTTAAAAATAAATTAA
1 ATTAAATTAAAATTTTACTTTAAATGGAGAGATTAAATTAAATTTTAAAAATAAATTAA
*
51326933 ATTAAATTAAAATTTTATTTTAAATGGAGAGATTAAATTAAATTTTAAAAATAAATTAA
1 ATTAAATTAAAATTTTACTTTAAATGGAGAGATTAAATTAAATTTTAAAAATAAATTAA
51326992 A-TAAAGTTAA
1 ATTAAA-TTAA
51327002 TTATTGTTAA
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
58 4 0.06
59 61 0.94
ACGTcount: A:0.52, C:0.01, G:0.07, T:0.41
Consensus pattern (59 bp):
ATTAAATTAAAATTTTACTTTAAATGGAGAGATTAAATTAAATTTTAAAAATAAATTAA
Found at i:51328668 original size:40 final size:40
Alignment explanation
Indices: 51328624--51328814 Score: 283
Period size: 40 Copynumber: 4.7 Consensus size: 40
51328614 TTGACGACAA
*
51328624 TTCGGCTATGTATGGCACTTAGTGTGCGGTTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCGAGATAGC
*
51328664 TTCGGCTATGTATGGCATTTAGTGTGCGATTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCGAGATAGC
*
51328704 TTCGGCTATGTATGGCACTTAGTGTTCGATTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCGAGATAGC
* ** *
51328744 TTCAGCTATGTATGGCACTTAGTGTGCGATATTAAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGAT-TCGAGATAGC
* *
51328785 TTCAGCTATGTATTGTCACTTAGTGTGCGA
1 TTCGGCTATGTA-TGGCACTTAGTGTGCGA
51328815 GAATTCGAGT
Statistics
Matches: 139, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 104 0.75
41 19 0.14
42 16 0.12
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.35
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGATTCGAGATAGC
Found at i:51338148 original size:28 final size:28
Alignment explanation
Indices: 51338106--51338171 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
51338096 ACAGTGTATG
* * * *
51338106 CAGTAACAGTCTGGGCCTTAGCCCTATA
1 CAGTATCAGTCTGGGCCTAAACCCAATA
*
51338134 CAGTATCAGTGTGGGCCTAAACCCAATA
1 CAGTATCAGTCTGGGCCTAAACCCAATA
*
51338162 CAATATCAGT
1 CAGTATCAGT
51338172 ACAGTGCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (28 bp):
CAGTATCAGTCTGGGCCTAAACCCAATA
Found at i:51348303 original size:20 final size:21
Alignment explanation
Indices: 51348280--51348318 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51348270 ATAAGTAAGA
*
51348280 TATGTGAT-GTTTATAATGTT
1 TATGTGATGGTTTACAATGTT
51348300 TATGTGATGGTTTACAATG
1 TATGTGATGGTTTACAATG
51348319 GGGTATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.49
Consensus pattern (21 bp):
TATGTGATGGTTTACAATGTT
Found at i:51352162 original size:30 final size:30
Alignment explanation
Indices: 51352128--51352188 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51352118 TCCTTAACTC
51352128 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
51352158 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
51352188 A
1 A
51352189 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:51356155 original size:40 final size:40
Alignment explanation
Indices: 51356100--51356252 Score: 229
Period size: 40 Copynumber: 3.8 Consensus size: 40
51356090 TATTCGGATG
*
51356100 ATATCCGGACTAAGATCTGAAGGCATTCGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCATTCGTGCTAGTTACT
51356140 ATATCCGGACTAAGATCCGAAGGCATTCGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCATTCGTGCTAGTTACT
*
51356180 ATATCCGGACTAAGATCCGAAGGCAATT-GTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGC-ATTCGTGCTAGTTACT
* **
51356220 ATAACCGGGTTAAG-TCCCGAAGGCATTCGTGCT
1 ATATCCGGACTAAGAT-CCGAAGGCATTCGTGCT
51356253 GGTTGTTACA
Statistics
Matches: 105, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
39 4 0.04
40 98 0.93
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCATTCGTGCTAGTTACT
Found at i:51366905 original size:50 final size:51
Alignment explanation
Indices: 51366763--51366905 Score: 227
Period size: 50 Copynumber: 2.8 Consensus size: 51
51366753 AGTTTCAATA
* *
51366763 TGAATCCCATGTAAAACCATGTCTGGGACATGGCATTGGCATAGATATGTG
1 TGAATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
51366814 TG-ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
1 TGAATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
* * *
51366864 TGAAT-CCATGTAAGACCATATCTGGGATATGACATTGGCATC
1 TGAATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
51366906 TCACTATGTG
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
50 82 0.95
51 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (51 bp):
TGAATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
Found at i:51367532 original size:20 final size:21
Alignment explanation
Indices: 51367497--51367535 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51367487 CTGATTTGAT
*
51367497 AAAATCATTATAAGTTATACA
1 AAAATAATTATAAGTTATACA
51367518 AAAATAATTAT-AGTTATA
1 AAAATAATTATAAGTTATA
51367536 ATTTATATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (21 bp):
AAAATAATTATAAGTTATACA
Found at i:51373505 original size:315 final size:315
Alignment explanation
Indices: 51372933--51373565 Score: 1257
Period size: 315 Copynumber: 2.0 Consensus size: 315
51372923 CATATATTAT
51372933 ATGGTTTTTATATTATATCAATAAGGGTATATAAGTAAATTAAACATTAAGTTAATATATGTTAT
1 ATGGTTTTTATATTATATCAATAAGGGTATATAAGTAAATTAAACATTAAGTTAATATATGTTAT
51372998 AATATAACATAAAACATAAAATAATAAAGCCATTAGGTGTTCATAAAATGAAAAGAAAAAGAAAA
66 AATATAACATAAAACATAAAATAATAAAGCCATTAGGTGTTCATAAAATGAAAAGAAAAAGAAAA
51373063 TAAAAGGGTTTTAGGGTTCGGCTATTCTCCAACTTGATTCAAGTTGAGTTTTAGCTCGGTTTTTG
131 TAAAAGGGTTTTAGGGTTCGGCTATTCTCCAACTTGATTCAAGTTGAGTTTTAGCTCGGTTTTTG
51373128 ATAATTTCTACCTTTTTTAGATGTTGCTTCGAGTACTACAAAACCCATGCTTGAATTTTTTTTAT
196 ATAATTTCTACCTTTTTTAGATGTTGCTTCGAGTACTACAAAACCCATGCTTGAATTTTTTTTAT
51373193 TCTGGTGAATATTTTAGTTAAGCCATTGTTGAGAGTTTGTGATTTTTGTTGTTTG
261 TCTGGTGAATATTTTAGTTAAGCCATTGTTGAGAGTTTGTGATTTTTGTTGTTTG
*
51373248 ATGGTTTTTATATTATATCATTAAGGGTATATAAGTAAATTAAACATTAAGTTAATATATGTTAT
1 ATGGTTTTTATATTATATCAATAAGGGTATATAAGTAAATTAAACATTAAGTTAATATATGTTAT
51373313 AATATAACATAAAACATAAAATAATAAAGCCATTAGGTGTTCATAAAATGAAAAGAAAAAGAAAA
66 AATATAACATAAAACATAAAATAATAAAGCCATTAGGTGTTCATAAAATGAAAAGAAAAAGAAAA
51373378 TAAAAGGGTTTTAGGGTTCGGCTATTCTCCAACTTGATTCAAGTTGAGTTTTAGCTCGGTTTTTG
131 TAAAAGGGTTTTAGGGTTCGGCTATTCTCCAACTTGATTCAAGTTGAGTTTTAGCTCGGTTTTTG
51373443 ATAATTTCTACCTTTTTTAGATGTTGCTTCGAGTACTACAAAACCCATGCTTGAATTTTTTTTAT
196 ATAATTTCTACCTTTTTTAGATGTTGCTTCGAGTACTACAAAACCCATGCTTGAATTTTTTTTAT
51373508 TCTGGTGAATATTTTAGTTAAGCCATTGTTGAGAGTTTGTGATTTTTGTTGTTTG
261 TCTGGTGAATATTTTAGTTAAGCCATTGTTGAGAGTTTGTGATTTTTGTTGTTTG
51373563 ATG
1 ATG
51373566 ATGAAATATG
Statistics
Matches: 317, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
315 317 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (315 bp):
ATGGTTTTTATATTATATCAATAAGGGTATATAAGTAAATTAAACATTAAGTTAATATATGTTAT
AATATAACATAAAACATAAAATAATAAAGCCATTAGGTGTTCATAAAATGAAAAGAAAAAGAAAA
TAAAAGGGTTTTAGGGTTCGGCTATTCTCCAACTTGATTCAAGTTGAGTTTTAGCTCGGTTTTTG
ATAATTTCTACCTTTTTTAGATGTTGCTTCGAGTACTACAAAACCCATGCTTGAATTTTTTTTAT
TCTGGTGAATATTTTAGTTAAGCCATTGTTGAGAGTTTGTGATTTTTGTTGTTTG
Found at i:51377553 original size:24 final size:24
Alignment explanation
Indices: 51377520--51377618 Score: 135
Period size: 24 Copynumber: 4.1 Consensus size: 24
51377510 AGGCATCCTC
51377520 GAATACGCCACAAAGGCACTTACA
1 GAATACGCCACAAAGGCACTTACA
* *
51377544 GAATATGCCACAAAGGCACATACA
1 GAATACGCCACAAAGGCACTTACA
*
51377568 GAATACGCCACAAAGGCACTTATA
1 GAATACGCCACAAAGGCACTTACA
* * * *
51377592 GAAGACACCATAAAGGCACTTATA
1 GAATACGCCACAAAGGCACTTACA
51377616 GAA
1 GAA
51377619 CATGTGTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 67 1.00
ACGTcount: A:0.44, C:0.24, G:0.17, T:0.14
Consensus pattern (24 bp):
GAATACGCCACAAAGGCACTTACA
Found at i:51380284 original size:40 final size:40
Alignment explanation
Indices: 51380149--51380269 Score: 170
Period size: 40 Copynumber: 3.0 Consensus size: 40
51380139 AATAATTGAA
* * *
51380149 TGATTGCACGTACGTGCCCTTATTTGTACTTCGGTACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * * *
51380189 TGATTGTACATACGTGGCTCTGTTTGTACTTCGATACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
51380229 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
51380269 T
1 T
51380270 AAATGCATTT
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
Found at i:51385706 original size:22 final size:22
Alignment explanation
Indices: 51385681--51385747 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
51385671 AAAACAGTAG
* * *
51385681 GCACCGAAGTGTGGAACGATAA
1 GCACCAAAGTGCGAAACGATAA
*
51385703 GCACCAAAGTGCGAAACGGTAA
1 GCACCAAAGTGCGAAACGATAA
*
51385725 GCACTAAAGTGC-AAGACGATAA
1 GCACCAAAGTGCGAA-ACGATAA
51385747 G
1 G
51385748 TGCGCTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 2 0.05
22 36 0.95
ACGTcount: A:0.40, C:0.19, G:0.28, T:0.12
Consensus pattern (22 bp):
GCACCAAAGTGCGAAACGATAA
Found at i:51394915 original size:46 final size:44
Alignment explanation
Indices: 51394817--51394979 Score: 150
Period size: 46 Copynumber: 3.5 Consensus size: 44
51394807 GTGCCAATGC
* * *
51394817 CATGTCCCAGACATGGTTTTACACTAACACATCTCGTAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACATCTCGTAGCCGATG
* *
51394862 CATGTCCCAGACATGTCTTACACTAGCTTACGTCTCG-AGGCCGGTG
1 CATGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCCGATG
* * * *
51394908 CATGTCCCAAACATGTCTTACACTAGCACTCATCTC-AATGTCAATG
1 CATGTCCCAGACATGTCTTACACTAGCA--CATCTCGTA-GCCGATG
51394954 CCATGTCCCAGACATGGTCTTACACT
1 -CATGTCCCAGACAT-GTCTTACACT
51394980 GGCTCACACA
Statistics
Matches: 98, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
44 12 0.12
45 15 0.15
46 48 0.49
47 13 0.13
48 10 0.10
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATG
Found at i:51396351 original size:46 final size:46
Alignment explanation
Indices: 51396231--51396351 Score: 206
Period size: 46 Copynumber: 2.6 Consensus size: 46
51396221 TATACCAGCC
* * *
51396231 AGTGTAAGACATGTCTGGGACATGCATCAACATTAAGACGAGAGCT
1 AGTGTAAGACATATCTGGGACATGCATCGACATTAAGACCAGAGCT
51396277 AGTGTAAGACATATCTGGGACATGCATCGACATTAAGACCAGAGCT
1 AGTGTAAGACATATCTGGGACATGCATCGACATTAAGACCAGAGCT
*
51396323 AGTGTAAGACATATCCGGGACATGCATCG
1 AGTGTAAGACATATCTGGGACATGCATCG
51396352 GCCTCGAGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATATCTGGGACATGCATCGACATTAAGACCAGAGCT
Found at i:51404108 original size:48 final size:48
Alignment explanation
Indices: 51404053--51404221 Score: 175
Period size: 48 Copynumber: 3.6 Consensus size: 48
51404043 TGATATGTGT
* *
51404053 GCTAGTGTAAAACAT-TTCTGGGACATGCATCGGCCTCGAGATATACCA
1 GCTAGTGTAAGACATGTT-TGGGACATGCATCGGCCTCGAGATATACAA
* * * ** *
51404101 GCCAGTGTAAGACATGTTTGGGACATGCATCGACATTC-AGA-CGA-GA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGC-CTCGAGATATACAA
* *
51404147 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATACAA
* * *
51404195 GCTAGTGTAAGACCTATCTGGGACATG
1 GCTAGTGTAAGACATGTTTGGGACATG
51404222 GCGTCAGCTT
Statistics
Matches: 98, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.36
47 2 0.02
48 56 0.57
49 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATACAA
Found at i:51404369 original size:49 final size:49
Alignment explanation
Indices: 51404242--51404372 Score: 120
Period size: 49 Copynumber: 2.7 Consensus size: 49
51404232 GTTGCGTGTT
* * * * * *
51404242 AGTGTAAAACCAGTCTGGGACATGGCATCAACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGAATCAGCACCGATAGATGAAAGCA
* * * * * * * *
51404291 GGTATAAGACCTATCTGGGAGACGAAATCAGC-CTCGATATATGAAAGTA
1 AGTGTAAGACCTGTCTGGGACATGGAATCAGCAC-CGATAGATGAAAGCA
51404340 AGTGTAAGACCTGTCTGGGACATGGAATCAGCA
1 AGTGTAAGACCTGTCTGGGACATGGAATCAGCA
51404373 TCTTATCCCA
Statistics
Matches: 60, Mismatches: 20, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
48 1 0.02
49 59 0.98
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGAATCAGCACCGATAGATGAAAGCA
Found at i:51404882 original size:54 final size:55
Alignment explanation
Indices: 51404822--51404939 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 55
51404812 CGTGTATAAC
* * ** **
51404822 ACTGACTT-TAGGGCACGACCATGACACACGCCTGTG-GGGTTACCTGTGGACAAT
1 ACTGACTTATA-GACACGACCATGACACACGCCCGTGTGGCCTACCCATGGACAAT
* *
51404876 ACTGACTTATAGACACGGCTATGACACACGCCCGTGTGGCCTACCCATGGACAAT
1 ACTGACTTATAGACACGACCATGACACACGCCCGTGTGGCCTACCCATGGACAAT
51404931 ACTGACTTA
1 ACTGACTTA
51404940 AAAGTTTAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 29 0.54
55 25 0.46
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (55 bp):
ACTGACTTATAGACACGACCATGACACACGCCCGTGTGGCCTACCCATGGACAAT
Found at i:51405758 original size:49 final size:49
Alignment explanation
Indices: 51405689--51406005 Score: 243
Period size: 49 Copynumber: 6.7 Consensus size: 49
51405679 TTAAGTTGCC
* * * *
51405689 GATGCCATTTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGATGCT
* * * * *
51405738 GATGCCATGTCCCAAACATGGTCTTCCACTAGCTCTCGTGTATACG-TGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGT-CAT-CGATGCT
* * * * * *
51405788 GATG-CATGTCCTAAACAT-GTCTTACACTAGC-A-CG-AAGC-TTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAT-GCT
* * *
51405832 GATG-CAGGTCCCAGACAT-GTCTTACACTGGC-ACTCATC-TCTATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCGTCATCGATGCT
*
51405878 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAAT-G-TGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAT-GCT
* * ** * *
51405926 GATG-CATGTCCCAGACA-CGTCTTACACTAGCCCTCGTC-TCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGATGCT
*
51405972 GGTGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
51406006 CTCACATAAC
Statistics
Matches: 214, Mismatches: 37, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 32 0.15
45 1 0.00
46 32 0.15
47 42 0.20
48 47 0.22
49 48 0.22
50 8 0.04
51 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGATGCT
Found at i:51405850 original size:44 final size:44
Alignment explanation
Indices: 51405785--51405956 Score: 168
Period size: 44 Copynumber: 3.8 Consensus size: 44
51405775 GTGTATACGT
* *
51405785 GCTGATGCATGTCCTAAACATGTCTTACACTAGCACGAAGCT-TA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAA-CTCTA
* * * *
51405829 GCTGATGCAGGTCCCAGACATGTCTTACACTGGCACTCATCTCTA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAC-GAACTCTA
* * *
51405874 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAA-TGTG
1 -GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-CG-AACTCTA
*
51405923 GCTGATGCATGTCCCAGACACGTCTTACACTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
51405957 CCTCGTCTCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
44 34 0.32
45 3 0.03
46 19 0.18
47 26 0.24
48 20 0.19
49 3 0.03
50 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (44 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAACTCTA
Found at i:51405909 original size:48 final size:48
Alignment explanation
Indices: 51405689--51406009 Score: 234
Period size: 48 Copynumber: 6.8 Consensus size: 48
51405679 TTAAGTTGCC
* * * * *
51405689 GATGCCATTTCCCAGACATGGTCTTACACTGGCTA-TCTTCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-ACTCATC-TCTATGCT
* * * * * * *
51405738 GATGCCATGTCCCAAACATGGTCTTCCACTAGCTCTCGTGTATACGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCTA--TGCT
* * * ** *
51405788 GATG-CATGTCCTAAACAT-GTCTTACACTAGCACGAAGCT-TA-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCTATGCT
*
51405832 GATG-CAGGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCTATGCT
* *
51405878 GATGCCATGTCCCAGACATGGTCTTACACTGG--CT-ATCGTAATGTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATC-T-CTAT-GCT
* * * * * *
51405926 GATG-CATGTCCCAGACA-CGTCTTACACTAGCCCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCTATGCT
* *
51405972 GGTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCA
51406010 CATAACTCAA
Statistics
Matches: 216, Mismatches: 41, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
44 35 0.16
45 5 0.02
46 26 0.12
47 44 0.20
48 53 0.25
49 47 0.22
50 6 0.03
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCTATGCT
Found at i:51405938 original size:94 final size:94
Alignment explanation
Indices: 51405689--51406005 Score: 331
Period size: 94 Copynumber: 3.4 Consensus size: 94
51405679 TTAAGTTGCC
* * * * * *
51405689 GATGCCATTTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCATGTCCCAAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAAT-GTGGCTGATG-CATGTCCCAGA
* * * *
51405754 CATGGTCTTCCACTAGCTCTCGTGTATACGTGCT
64 CAT-GTCTTACACTAGCACTCGTCTCTA--TGCT
* * * * *
51405788 GATG-CATGTCCTAAACAT-GTCTTACACTAGC-A-CG-AA-GCTTAGCTGATGCAGGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATG--TGGCTGATGCATGTCCCAGA
* *
51405847 CATGTCTTACACTGGCACTCATCTCTATGCT
64 CATGTCTTACACTAGCACTCGTCTCTATGCT
51405878 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACA
* * * *
51405943 CGTCTTACACTAGCCCTCGTCTCAATGCC
66 TGTCTTACACTAGCACTCGTCTCTATGCT
*
51405972 GGTGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
51406006 CTCACATAAC
Statistics
Matches: 181, Mismatches: 29, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
90 8 0.04
91 12 0.07
92 31 0.17
93 13 0.07
94 85 0.47
95 3 0.02
96 2 0.01
97 12 0.07
98 11 0.06
99 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACA
TGTCTTACACTAGCACTCGTCTCTATGCT
Found at i:51405950 original size:138 final size:141
Alignment explanation
Indices: 51405698--51405956 Score: 348
Period size: 140 Copynumber: 1.9 Consensus size: 141
51405688 CGATGCCATT
*
51405698 TCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCATGTCCCAAACATGGTCTT
1 TCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAAACATGGTCTT
* * * *
51405763 CCACTAGCTCTCGTGTATACGTGCTGATGCATGTCCTAAACATGTCTTACACTAGCACGAAGCTT
66 ACACTAGCTATCG-GTATACGTGCTGATGCATGTCCCAAACACGTCTTACACTAGCACGAAGCTT
51405828 AGCTGATGCAGG
130 AGCTGATGCAGG
* * * *
51405840 TCCCAGACAT-GTCTTACACTGGC-ACTCATC-TCTATGCTGATGCCATGTCCCAGACATGGTCT
1 TCCCAGACATGGTCTTACACTGGCTA-TCATCATCGAGGCCGATGCCATGTCCCAAACATGGTCT
* * *
51405902 TACACTGGCTATC-GTA-ATGTGGCTGATGCATGTCCCAGACACGTCTTACACTAGC
65 TACACTAGCTATCGGTATACGT-GCTGATGCATGTCCCAAACACGTCTTACACTAGC
51405957 CCTCGTCTCA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
137 3 0.03
138 34 0.33
140 39 0.38
141 17 0.17
142 10 0.10
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (141 bp):
TCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAAACATGGTCTT
ACACTAGCTATCGGTATACGTGCTGATGCATGTCCCAAACACGTCTTACACTAGCACGAAGCTTA
GCTGATGCAGG
Found at i:51413243 original size:47 final size:46
Alignment explanation
Indices: 51413044--51413352 Score: 192
Period size: 47 Copynumber: 6.5 Consensus size: 46
51413034 TTAAGTTGCC
* * * *
51413044 GATGCCATGTCCCAGACATGGTTTTCCACTGGCTATCT-TCATCGAGGCT
1 GATG-CATGTCCCAGACA-AGTCTTACACTGGCTA-CTATCAT-TAGGCT
* * * *
51413093 GATGCCATGTCCCAAACATAGTCTTACACTAGCT-CTCGT-GTATACGTGCT
1 GATG-CATGTCCCAGACA-AGTCTTACACTGGCTACT-ATCAT-TA-G-GCT
* * * *
51413143 GATGCATGTCCTAGA-AATGTCTTACACTAG-TACAAAGC-TTA-GCT
1 GATGCATGTCCCAGACAA-GTCTTACACTGGCTAC-TATCATTAGGCT
*
51413187 GATGCATGTCCCAGACAAGTCTTACACTGGCTACTATCATTGAGGCC
1 GATGCATGTCCCAGACAAGTCTTACACTGGCTACTATCATT-AGGCT
* * *
51413234 GATGCATGTCCCAGACATGTCTTACACTCGC-ACTCATC-TCTACGCT
1 GATGCATGTCCCAGACAAGTCTTACACTGGCTACT-ATCAT-TAGGCT
*
51413280 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTA--A-TATGGCT
1 GATG-CATGTCCCAGACA-AGTCTTACACTGGCTA-C-TATCATTA-GGCT
*
51413328 GATGCATGTCCCAGACACGTCTTAC
1 GATGCATGTCCCAGACAAGTCTTAC
51413353 CCTAGCCCTC
Statistics
Matches: 212, Mismatches: 26, Indels: 47
0.74 0.09 0.16
Matches are distributed among these distances:
44 30 0.14
45 7 0.03
46 19 0.09
47 69 0.33
48 36 0.17
49 41 0.19
50 9 0.04
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACAAGTCTTACACTGGCTACTATCATTAGGCT
Found at i:51413329 original size:141 final size:139
Alignment explanation
Indices: 51413044--51413352 Score: 331
Period size: 141 Copynumber: 2.2 Consensus size: 139
51413034 TTAAGTTGCC
* * * *
51413044 GATGCCATGTCCCAGACATGGTTTTCCACTGGCTATCTTCATCGAGGCTGATGCCATGTCCCAAA
1 GATG-CATGTCCCAGACA-AGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCATGTCCCAAA
* * * *
51413109 CATAGTCTTACACTAGCTCTCGTGTATACGTGCTGATGCATGTCCTAGAAATGTCTTACACTAGT
64 CATAGTCTTACACTAGCACTCATCTATACG-GCTGATGCATGTCCCAGAAATGTCTTACACTAGT
51413174 ACAAAGCTTAGCT
128 ACAAA-CTTAGCT
* *
51413187 GATGCATGTCCCAGACAAGTCTTACACTGGCTA-CTATCATTGAGGCCGATG-CATGTCCCAGAC
1 GATGCATGTCCCAGACAAGTCTTACACTGGCTATCT-TCATCGAGGCCGATGCCATGTCCCAAAC
* * * *
51413250 AT-GTCTTACACTCGCACTCATCTCTAC-GCTGATGCCATGTCCCAGACATGGTCTTACACTGGC
65 ATAGTCTTACACTAGCACTCATCTATACGGCTGATG-CATGTCCCAGAAAT-GTCTTACACTAG-
* *
51413313 TATCGTAA-TATGGCT
127 TA-C-AAACT-TAGCT
*
51413328 GATGCATGTCCCAGACACGTCTTAC
1 GATGCATGTCCCAGACAAGTCTTAC
51413353 CCTAGCCCTC
Statistics
Matches: 142, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
137 7 0.05
138 12 0.08
139 31 0.22
140 18 0.13
141 55 0.39
142 15 0.11
143 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (139 bp):
GATGCATGTCCCAGACAAGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCATGTCCCAAACA
TAGTCTTACACTAGCACTCATCTATACGGCTGATGCATGTCCCAGAAATGTCTTACACTAGTACA
AACTTAGCT
Found at i:51413335 original size:94 final size:91
Alignment explanation
Indices: 51413090--51413405 Score: 307
Period size: 94 Copynumber: 3.4 Consensus size: 91
51413080 CTTCATCGAG
* * * * *
51413090 GCTGATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCGTGTATACGTGCTGATGCATGTCCT
1 GCTGATGCCATGTCCCAGACATAGTCTTACACTGGCTATC--GTATATG-GCTGATGCATGTCCC
* * ** *
51413155 AGAAATGTCTTACACTAGTACAAAGCTTA
63 AGACATGTCTTACACTAGCACTCATCTTA
*
51413184 GCTGATG-CATGTCCCAGACA-AGTCTTACACTGGCTA-C-TATCATTGAGGCCGATGCATGTCC
1 GCTGATGCCATGTCCCAGACATAGTCTTACACTGGCTATCGTAT-A-T--GGCTGATGCATGTCC
*
51413245 CAGACATGTCTTACACTCGCACTCATCTCTA
62 CAGACATGTCTTACACTAGCACTCATCT-TA
*
51413276 CGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATATGGCTGATGCATGTCCCA
1 -GCTGATGCCATGTCCCAGACATAGTCTTACACTGGCTATCGT-ATATGGCTGATGCATGTCCCA
* * * *
51413341 GACACGTCTTACCCTAGCCCTCGTCTTAA
64 GACATGTCTTACACTAGCACTCATCTT-A
* * * *
51413370 TTCCGGTGCCATGTCCCAGACATGGTCTTACACTGG
1 -GCTGATGCCATGTCCCAGACATAGTCTTACACTGG
51413406 TTCTCACATA
Statistics
Matches: 187, Mismatches: 23, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
88 3 0.02
89 1 0.01
91 35 0.19
92 17 0.09
93 20 0.11
94 90 0.48
95 15 0.08
96 2 0.01
97 2 0.01
98 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (91 bp):
GCTGATGCCATGTCCCAGACATAGTCTTACACTGGCTATCGTATATGGCTGATGCATGTCCCAGA
CATGTCTTACACTAGCACTCATCTTA
Found at i:51415478 original size:20 final size:21
Alignment explanation
Indices: 51415453--51415492 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
51415443 AAGGAACGAG
51415453 AAATGGGCCAACA-ACGAAAA
1 AAATGGGCCAACATACGAAAA
*
51415473 AAATGGTCCAACATACGAAA
1 AAATGGGCCAACATACGAAA
51415493 TCAACACGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.53, C:0.20, G:0.17, T:0.10
Consensus pattern (21 bp):
AAATGGGCCAACATACGAAAA
Found at i:51425696 original size:23 final size:22
Alignment explanation
Indices: 51425644--51425696 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
51425634 TCCACGTCTT
*
51425644 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
51425666 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
51425689 TTTCTTTT
1 TTTCTTTT
51425697 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:51434435 original size:46 final size:45
Alignment explanation
Indices: 51434351--51434517 Score: 149
Period size: 46 Copynumber: 3.6 Consensus size: 45
51434341 TCTCGTAGTC
* * * *
51434351 GATGCAAGTCCCA-AGCATGTCTTATACTAGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGA-CATGTCTTACACTAGCCT-CGTCTCGAGGCT
* * *
51434397 GATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCGAGGCT
* * * * *
51434443 GATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CCTCGT-CTCGAGGCT
51434491 GATGCATGTCCCAGACATGTCTTACAC
1 GATGCATGTCCCAGACATGTCTTACAC
51434518 CAGCTCACAA
Statistics
Matches: 100, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 48 0.48
47 29 0.29
48 22 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTCGAGGCT
Found at i:51440519 original size:19 final size:19
Alignment explanation
Indices: 51440495--51440533 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
51440485 TTGAGTAAGC
*
51440495 TACTTCCATTTTTCTTCAA
1 TACTTCCATTTTTCATCAA
51440514 TACTTCCATTTTTCATCAA
1 TACTTCCATTTTTCATCAA
51440533 T
1 T
51440534 GCCAATGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (19 bp):
TACTTCCATTTTTCATCAA
Found at i:51455146 original size:16 final size:15
Alignment explanation
Indices: 51455113--51455178 Score: 66
Period size: 15 Copynumber: 4.3 Consensus size: 15
51455103 TGGAACTAAT
51455113 TAAAGAAAT-AAATAAA
1 TAAA-AAATAAAAT-AA
51455129 TAAAAAATAAGAATAA
1 TAAAAAATAA-AATAA
51455145 TAAAAAATAAAATAA
1 TAAAAAATAAAATAA
*
51455160 -AATAAAGTAAAATAA
1 TAA-AAAATAAAATAA
51455175 -AAAA
1 TAAAA
51455179 TAGGATAATG
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
14 4 0.09
15 22 0.48
16 17 0.37
17 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (15 bp):
TAAAAAATAAAATAA
Found at i:51455148 original size:20 final size:20
Alignment explanation
Indices: 51455118--51455180 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 20
51455108 CTAATTAAAG
51455118 AAATAAATAAATAAAAAATA
1 AAATAAATAAATAAAAAATA
*
51455138 AGAAT-AATAAAAAATAAAATA
1 A-AATAAATAAATAA-AAAATA
51455159 AAATAAAGTAAAATAAAAAATA
1 AAATAAA-T-AAATAAAAAATA
51455181 GGATAATGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
20 12 0.33
21 12 0.33
22 7 0.19
23 5 0.14
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (20 bp):
AAATAAATAAATAAAAAATA
Found at i:51455154 original size:27 final size:27
Alignment explanation
Indices: 51455122--51455180 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
51455112 TTAAAGAAAT
51455122 AAATAAATAAAAAAT-AAG-AATAATAAA
1 AAATAAA-AAAAAATAAAGTAA-AATAAA
*
51455149 AAATAAAATAAAATAAAGTAAAATAAA
1 AAATAAAAAAAAATAAAGTAAAATAAA
51455176 AAATA
1 AAATA
51455181 GGATAATGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 6 0.21
27 21 0.72
28 2 0.07
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (27 bp):
AAATAAAAAAAAATAAAGTAAAATAAA
Found at i:51455161 original size:10 final size:10
Alignment explanation
Indices: 51455118--51455176 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
51455108 CTAATTAAAG
51455118 AAAT-AAATA
1 AAATAAAATA
*
51455127 AATAAAAAATA
1 AA-ATAAAATA
51455138 AGAATAATAA-A
1 A-AATAA-AATA
51455149 AAATAAAATA
1 AAATAAAATA
*
51455159 AAATAAAGTA
1 AAATAAAATA
51455169 AAATAAAA
1 AAATAAAA
51455177 AATAGGATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
9 4 0.10
10 23 0.56
11 11 0.27
12 3 0.07
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (10 bp):
AAATAAAATA
Found at i:51455180 original size:7 final size:7
Alignment explanation
Indices: 51455113--51455156 Score: 52
Period size: 8 Copynumber: 5.7 Consensus size: 7
51455103 TGGAACTAAT
51455113 TAAAGAAA
1 TAAA-AAA
51455121 TAAATAAA
1 TAAA-AAA
51455129 TAAAAAA
1 TAAAAAA
51455136 TAAGAATAA
1 TAA-AA-AA
51455145 TAAAAAA
1 TAAAAAA
51455152 TAAAA
1 TAAAA
51455157 TAAAATAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
7 13 0.39
8 15 0.45
9 5 0.15
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (7 bp):
TAAAAAA
Found at i:51455884 original size:20 final size:20
Alignment explanation
Indices: 51455859--51455908 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
51455849 TCGCTTCTTC
51455859 CACGCCCGTGTGACCT-CCCA
1 CACGCCCGTGTGA-CTGCCCA
51455879 CACGCCCGTGTGACTGCCCA
1 CACGCCCGTGTGACTGCCCA
*
51455899 CACGACCGTG
1 CACGCCCGTG
51455909 AGCCTTGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.16, C:0.46, G:0.24, T:0.14
Consensus pattern (20 bp):
CACGCCCGTGTGACTGCCCA
Found at i:51458729 original size:94 final size:94
Alignment explanation
Indices: 51458568--51459037 Score: 904
Period size: 94 Copynumber: 5.0 Consensus size: 94
51458558 AATGTGACCG
* *
51458568 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51458633 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51458662 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51458727 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51458756 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51458821 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51458850 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51458915 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51458944 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
51459009 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51459038 GAATGTCGAT
Statistics
Matches: 372, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 372 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:51459098 original size:24 final size:24
Alignment explanation
Indices: 51459066--51459129 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
51459056 GAAAATTTCA
* *
51459066 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
51459090 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
51459114 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
51459130 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:51466842 original size:94 final size:94
Alignment explanation
Indices: 51466578--51466829 Score: 468
Period size: 94 Copynumber: 2.7 Consensus size: 94
51466568 AATGTGACCG
* *
51466578 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51466643 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
51466672 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTCAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51466737 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
51466766 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATATGTGC
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
51466830 AGATTTGAAT
Statistics
Matches: 153, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 153 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:51466896 original size:24 final size:24
Alignment explanation
Indices: 51466864--51466927 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
51466854 GAAAATTTCA
* *
51466864 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
51466888 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
51466912 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
51466928 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:51469934 original size:39 final size:40
Alignment explanation
Indices: 51469777--51470001 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
51469767 GCTACTCGTT
* *
51469777 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
51469817 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51469857 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
51469897 CAAATGTCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
51469936 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51469977 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51470002 CATCATTCAA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 116 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51469961 original size:119 final size:120
Alignment explanation
Indices: 51469777--51470001 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
51469767 GCTACTCGTT
*
51469777 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
51469842 ATTTAATAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAATAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
51469897 CAAATGTCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
** * *
51469959 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
51470002 CATCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 65 0.72
120 21 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51474885 original size:39 final size:40
Alignment explanation
Indices: 51474814--51474957 Score: 156
Period size: 39 Copynumber: 3.6 Consensus size: 40
51474804 GCTACTCGTT
* *
51474814 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
51474854 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
51474893 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
51474934 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51474958 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.02
39 47 0.52
40 33 0.37
41 8 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:51482714 original size:40 final size:39
Alignment explanation
Indices: 51482677--51482768 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
51482667 GCTACTCGTT
*
51482677 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
51482717 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
51482756 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51482769 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:51482748 original size:39 final size:40
Alignment explanation
Indices: 51482658--51482821 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
51482648 CGGAATTTAA
** *
51482658 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
51482698 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51482737 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51482777 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51482817 CCGGA
1 CCGGA
51482822 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51490058 original size:30 final size:30
Alignment explanation
Indices: 51490016--51490073 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
51490006 CACAGGCTGG
*
51490016 CACATGGGCGTGTGGCCAGCTCATGTGGCT
1 CACATGGGCGTGTGACCAGCTCATGTGGCT
* *
51490046 CACA-GGGACGTGTGATCAGCTCGTGTGG
1 CACATGGG-CGTGTGACCAGCTCATGTGG
51490074 GAATGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.16, C:0.24, G:0.38, T:0.22
Consensus pattern (30 bp):
CACATGGGCGTGTGACCAGCTCATGTGGCT
Found at i:51491452 original size:22 final size:22
Alignment explanation
Indices: 51491418--51491461 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
51491408 CCTCCGTTGC
51491418 CTCTAGCACTGACATTCTCTGT
1 CTCTAGCACTGACATTCTCTGT
* *
51491440 CTCTAGTATTGACATTCTCTGT
1 CTCTAGCACTGACATTCTCTGT
51491462 GGAATCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (22 bp):
CTCTAGCACTGACATTCTCTGT
Found at i:51494400 original size:71 final size:70
Alignment explanation
Indices: 51494169--51494402 Score: 195
Period size: 70 Copynumber: 3.3 Consensus size: 70
51494159 TGGCTGGGGT
* * * * * * *
51494169 TTTTCACTTGCGAGCCTTAATATGACAAC-CAGGAGTTTTTAATTCTTGCTAACTGTGTCGTGGC
1 TTTTCACCTGCGAGCCTTAATATTACAACTGA-GAGTTTTTAACTCTAGCTAACTGTGTAGAGGC
* **
51494233 TACATT
65 TGCAAA
* * * *
51494239 TTTTCACCTGCGAGCCTTAGTATGA-AAGCTGGGAGTTTTTAACTCTCGC-AACTGTGTTAGAGG
1 TTTTCACCTGCGAGCCTTAATATTACAA-CTGAGAGTTTTTAACTCTAGCTAACTGTG-TAGAGG
* **
51494302 TTGCGGA
64 CTGCAAA
* ** * * *
51494309 TTTTAACCTATGAGCATTAATATTTCAACTGAGAGTTTTTAACTCTAGCTAACTGTGCTGGAGGC
1 TTTTCACCTGCGAGCCTTAATATTACAACTGAGAGTTTTTAACTCTAGCTAACTGTG-TAGAGGC
51494374 TGCAAA
65 TGCAAA
*
51494380 TTTTCACCTGCGAACCTTAATAT
1 TTTTCACCTGCGAGCCTTAATAT
51494403 GATAGCTAAT
Statistics
Matches: 127, Mismatches: 32, Indels: 9
0.76 0.19 0.05
Matches are distributed among these distances:
69 9 0.07
70 82 0.65
71 36 0.28
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (70 bp):
TTTTCACCTGCGAGCCTTAATATTACAACTGAGAGTTTTTAACTCTAGCTAACTGTGTAGAGGCT
GCAAA
Found at i:51519320 original size:40 final size:40
Alignment explanation
Indices: 51519081--51519306 Score: 321
Period size: 40 Copynumber: 5.7 Consensus size: 40
51519071 TTGAATGATG
* * * * *
51519081 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
51519121 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51519161 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51519201 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51519241 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
51519282 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
51519307 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 162 0.95
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51523644 original size:84 final size:83
Alignment explanation
Indices: 51523539--51523756 Score: 328
Period size: 84 Copynumber: 2.6 Consensus size: 83
51523529 ATAAGCCTGT
* *
51523539 TAGACCTTTAAGTCCTATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATCT
1 TAGACCTTTAAGT-CGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATAT
*
51523604 TCACCAGCTTAAAGATTGG
65 TCACCAGCTTAAAGATTGC
*
51523623 TAGACCTTTAAGTACGGTATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATAT
1 TAGACCTTTAAGT-CGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATAT
*
51523688 TCACCAGCTTAAAGCTTGC
65 TCACCAGCTTAAAGATTGC
* * * *
51523707 TAGACCCTTAAGTCTGATATCATTTCACTGGCATTATGCCTGCCAGGCTC
1 TAGACCTTTAAGTC-GATATCATTTCACCGGCATTACGCCTGCTAGGCTC
51523757 AAAGCTCGAA
Statistics
Matches: 122, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
83 1 0.01
84 121 0.99
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (83 bp):
TAGACCTTTAAGTCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATATT
CACCAGCTTAAAGATTGC
Found at i:51523692 original size:41 final size:41
Alignment explanation
Indices: 51523562--51523692 Score: 95
Period size: 41 Copynumber: 3.1 Consensus size: 41
51523552 CCTATATCAT
*
51523562 TTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATC
1 TTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATA
* * ** * * *** ** *
51523603 TTCACCAGC-TTAAAGATTGGTAGACCTTTAAGTACGGT-ATCA
1 TTCACCGGCATT-ACGCCTGCTAG-GCTCGGAGCCCGATAAT-A
51523645 TTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATA
1 -TTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATA
51523687 TTCACC
1 TTCACC
51523693 AGCTTAAAGC
Statistics
Matches: 59, Mismatches: 25, Indels: 12
0.61 0.26 0.12
Matches are distributed among these distances:
40 2 0.03
41 23 0.39
42 15 0.25
43 17 0.29
44 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (41 bp):
TTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATA
Found at i:51523708 original size:41 final size:41
Alignment explanation
Indices: 51523579--51523709 Score: 95
Period size: 41 Copynumber: 3.1 Consensus size: 41
51523569 GCATTACGCC
* *
51523579 TGCTAGGCTCGGAGCCCGATAATCTTCACCAGCTTAAAGAT
1 TGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCT
* * *** ** * * * *
51523620 TGGTAGACCTTTAAGTACGGT-ATCATTTCACCGGCATT-ACGCC
1 TGCTAG-GCTCGGAGCCCGATAAT-A-TTCACCAGC-TTAAAGCT
51523663 TGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCT
1 TGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCT
51523704 TGCTAG
1 TGCTAG
51523710 ACCCTTAAGT
Statistics
Matches: 60, Mismatches: 24, Indels: 12
0.62 0.25 0.12
Matches are distributed among these distances:
40 2 0.03
41 24 0.40
42 15 0.25
43 17 0.28
44 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (41 bp):
TGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCT
Found at i:51529647 original size:19 final size:20
Alignment explanation
Indices: 51529623--51529660 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
51529613 GGTACCACCA
51529623 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
51529642 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
51529661 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:51530421 original size:30 final size:30
Alignment explanation
Indices: 51530387--51530446 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51530377 ATTTAATACG
51530387 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
51530417 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
51530447 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:51535573 original size:48 final size:48
Alignment explanation
Indices: 51535518--51535780 Score: 268
Period size: 48 Copynumber: 5.6 Consensus size: 48
51535508 AAGCTGACGC
**
51535518 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* ** *
51535566 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGG-CGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGA-GGCCGATG
* * * * * *
51535612 CATGTCCTAGTCAAGTCTTACACTGGCTTGTATATTTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * * * *
51535660 CATGTCCTAGTCAAGTCTTACACTGGCTTGTATATTTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * *
51535708 CATGTCCCAGACATGTCTTACACTAGCTCT-CATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
*
51535754 CATGTCCCAGGCATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
51535781 ACACATATCA
Statistics
Matches: 186, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
46 66 0.35
47 9 0.05
48 110 0.59
49 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:51535774 original size:142 final size:141
Alignment explanation
Indices: 51535370--51535777 Score: 364
Period size: 142 Copynumber: 2.9 Consensus size: 141
51535360 ACGCCAAAGT
* * * * * *
51535370 CGATGCAATGTCCTAGACAGGTCTTACACTAACTTTTATATATCGAGGCCGATGCCATGTCCCAG
1 CGATGC-ATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAGGCCAATG-CATGTCCCAG
* * * ** * *
51535435 ACAGGTCTTACACTGGCTCTC-ATCTATTGGTGTCGATGCCATGTCCCAGATAGGTCTTACAATG
64 ACATGTCTTACACTAGCTCTCGATC-AAT-G-G-CGATG-CATGTCCCAGGCAAGTCTTACACTG
* *** *
51535499 AC----ATACAAT-AAGC
124 GCTTGTATATTTTGAGGC
* * * *
51535512 TGACGCCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTAATGCATGTCCCAGA
1 CGATG-CATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGA
* * *
51535577 CATGTCTTACACTAGCTCTCGTCTCAATGGCGATGCATGTCCTAGTCAAGTCTTACACTGGCTTG
65 CATGTCTTACACTAGCTCTCG-ATCAATGGCGATGCATGTCCCAGGCAAGTCTTACACTGGCTTG
51535642 TATATTTTGAGGC
129 TATATTTTGAGGC
* * * * * *
51535655 CGATGCATGTCCTAGTCAAGTCTTACACTGGCTTGTATATTTTGAGGCCGATGCATGTCCCAGAC
1 CGATGCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGAC
*
51535720 ATGTCTTACACTAGCTCTC-AT-AATGTGGCCGATGCATGTCCCAGGCATGTCTTACACT
66 ATGTCTTACACTAGCTCTCGATCAA--TGG-CGATGCATGTCCCAGGCAAGTCTTACACT
51535778 AGCACACATA
Statistics
Matches: 218, Mismatches: 37, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
138 21 0.10
139 7 0.03
140 2 0.01
141 33 0.15
142 146 0.67
143 9 0.04
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (141 bp):
CGATGCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGAC
ATGTCTTACACTAGCTCTCGATCAATGGCGATGCATGTCCCAGGCAAGTCTTACACTGGCTTGTA
TATTTTGAGGC
Found at i:51540574 original size:12 final size:12
Alignment explanation
Indices: 51540557--51540582 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51540547 CTAAAAATGT
51540557 GAAAATCATCAA
1 GAAAATCATCAA
51540569 GAAAATCATCAA
1 GAAAATCATCAA
51540581 GA
1 GA
51540583 TCACTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (12 bp):
GAAAATCATCAA
Found at i:51543794 original size:18 final size:17
Alignment explanation
Indices: 51543768--51543802 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51543758 ACACCACTAC
51543768 CACTAATCTTCTCTCTTT
1 CACTAATCTTCT-TCTTT
*
51543786 CACTCATCTTCTTCTTT
1 CACTAATCTTCTTCTTT
51543803 TACTTTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.14, C:0.34, G:0.00, T:0.51
Consensus pattern (17 bp):
CACTAATCTTCTTCTTT
Found at i:51545772 original size:30 final size:30
Alignment explanation
Indices: 51545738--51545798 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51545728 TCCTTAACTC
51545738 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
51545768 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
51545798 A
1 A
51545799 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:51548495 original size:27 final size:29
Alignment explanation
Indices: 51548460--51548521 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 29
51548450 TACCTAGACC
51548460 CCCTATATATGATAA-AGTGACTATTTT-G
1 CCCTATATATGATAAGA-TGACTATTTTGG
* *
51548488 CCCT-TATATGGTAAGATGACTGTTTTGG
1 CCCTATATATGATAAGATGACTATTTTGG
51548516 CCCTAT
1 CCCTAT
51548522 GTGATGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 18 0.62
28 10 0.34
29 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (29 bp):
CCCTATATATGATAAGATGACTATTTTGG
Found at i:51551451 original size:79 final size:78
Alignment explanation
Indices: 51551318--51551536 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 78
51551308 GAGTCACATC
* * * * * *
51551318 TCATGTAACTGTAGTGAATTAGGATTACCTTTTCAAGTCAAATCCTACCCACCTTAAGTTATCAT
1 TCATGTAACCGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
*
51551383 AAGGAATCATGTA
66 AAGGAATCATATA
** * * *
51551396 TTGTGTAACCGTAGCGAATCAGGATTATCCTTTTCAGGTTAAATGCTATCCACCTTAGGTTACCA
1 TCATGTAACCGTAGCGAATCAGGATTA-CCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
*
51551461 TAATGAATCATATA
65 TAAGGAATCATATA
* *
51551475 TCATGTAACCATAGCGAATCAGGATTACCCTTTTCAGATCAAATCCTATCCACCTTAAGTTA
1 TCATGTAACCGTAGCGAATCAGGATTA-CCTTTTCAGGTCAAATCCTATCCACCTTAAGTTA
51551537 ACGTAGTGAA
Statistics
Matches: 119, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
78 22 0.18
79 97 0.82
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (78 bp):
TCATGTAACCGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
AAGGAATCATATA
Found at i:51551587 original size:40 final size:40
Alignment explanation
Indices: 51551514--51551651 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 40
51551504 CTTTTCAGAT
* *
51551514 CAAATCCTATCCACCTTAAGTTAACGTAGTGAATCAAGAA
1 CAAATCCTATCCACTTTAAGTTAACATAGTGAATCAAGAA
* * * * * *
51551554 TAAATCCTATTCACTTTAAATTACCATAATGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTAACATAGTGAATCAAGAA
* * * **
51551594 CAAATCTTATCCACTTTGAGGTATTATAGTGAATCAAGAA
1 CAAATCCTATCCACTTTAAGTTAACATAGTGAATCAAGAA
*
51551634 CGAATCCTATCCACTTTA
1 CAAATCCTATCCACTTTA
51551652 TATTCTCGAG
Statistics
Matches: 77, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (40 bp):
CAAATCCTATCCACTTTAAGTTAACATAGTGAATCAAGAA
Found at i:51553357 original size:28 final size:28
Alignment explanation
Indices: 51553280--51553357 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 28
51553270 CTTCCTTATA
*
51553280 TATTAAATAATT-TAATAATAAAATATCT
1 TATTAAATAATTATAATAAT-ATATATCT
* *
51553308 TATTAAA-ATATTAAAATAATATTTATCT
1 TATTAAATA-ATTATAATAATATATATCT
51553336 TAATTAAATAATTATAA-AATAT
1 T-ATTAAATAATTATAATAATAT
51553358 CATCAACATC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
27 1 0.02
28 22 0.52
29 18 0.43
30 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (28 bp):
TATTAAATAATTATAATAATATATATCT
Found at i:51559518 original size:46 final size:46
Alignment explanation
Indices: 51559441--51559528 Score: 149
Period size: 46 Copynumber: 1.9 Consensus size: 46
51559431 CATTAGATGG
*
51559441 TATGTGAGCCAGTGTAAGACATATCTGGGACATGCATCGGCCGTAT
1 TATGAGAGCCAGTGTAAGACATATCTGGGACATGCATCGGCCGTAT
* *
51559487 TATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 TATGAGAGCCAGTGTAAGACATATCTGGGACATGCATCGGCC
51559529 TTGGGATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
TATGAGAGCCAGTGTAAGACATATCTGGGACATGCATCGGCCGTAT
Found at i:51559560 original size:48 final size:46
Alignment explanation
Indices: 51559451--51559568 Score: 141
Period size: 46 Copynumber: 2.5 Consensus size: 46
51559441 TATGTGAGCC
* * *
51559451 AGTGTAAGACATATCTGGGACATGCATCGGCCGTATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCGGATTATGAAAGCT
51559497 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGGGA-TAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC---GGATTATGA-AAGCT
* *
51559545 AGTGTAAGACCTGTCTGAGACATG
1 AGTGTAAGACATGTCTGGGACATG
51559569 GCGTCAGCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
46 31 0.49
47 1 0.02
48 29 0.46
49 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCGGATTATGAAAGCT
Found at i:51562474 original size:30 final size:30
Alignment explanation
Indices: 51562439--51562499 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51562429 TCCTTAACTC
51562439 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
51562469 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
51562499 A
1 A
51562500 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:51579609 original size:27 final size:27
Alignment explanation
Indices: 51579559--51579652 Score: 102
Period size: 26 Copynumber: 3.6 Consensus size: 27
51579549 CGAAGTCTAA
* * *
51579559 GTCGGTCA-TTTACCCTACAGGGGTAT
1 GTCGGTAATTTTACACTACAAGGGTAT
*
51579585 GTCGGTCATTTTACACTACAAGGGTAT
1 GTCGGTAATTTTACACTACAAGGGTAT
**
51579612 -TTTGTAATTTTACACTACAAGGGTAT
1 GTCGGTAATTTTACACTACAAGGGTAT
* *
51579638 TTCGATAATTTTACA
1 GTCGGTAATTTTACA
51579653 AATCGGGGGT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 31 0.53
27 27 0.47
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (27 bp):
GTCGGTAATTTTACACTACAAGGGTAT
Found at i:51579662 original size:27 final size:27
Alignment explanation
Indices: 51579579--51580076 Score: 526
Period size: 27 Copynumber: 18.6 Consensus size: 27
51579569 TACCCTACAG
* * * *
51579579 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* * *
51579606 GGGTATTT-TGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
51579632 GGGTATTTCGATAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
51579659 GGGTGTTTTGATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51579686 GGGCATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51579713 GGTTATTTCGGTAATTTTACAAATCTA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
51579740 GGGTATTT-GGTAATTTTACAAATCTA
1 GGGTATTTCGGTAATTTTACAAATCGA
51579766 GGGTATTT-GGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
51579792 GGGTGTTTTGTTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51579819 GGGTGTTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
51579846 GGGTGTTTCGGTAATTTCACAAAT-TA
1 GGGTATTTCGGTAATTTTACAAATCGA
51579872 GGGGTATTTCGGTAATTTTACAAATCGA
1 -GGGTATTTCGGTAATTTTACAAATCGA
* * *
51579900 GGGTATTTCAGTAATTTCACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
* ** **
51579927 GGGTATTCCGGTACGTTTACAAATTAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
51579954 GAGTATTTCAGTAATTTCAC-AATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
51579980 GGGTATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
51580007 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
51580033 AGGTATTTAGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
51580060 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
51580077 CTCTTTATTA
Statistics
Matches: 401, Mismatches: 63, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
26 119 0.30
27 279 0.70
28 3 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:51579857 original size:160 final size:159
Alignment explanation
Indices: 51579605--51580077 Score: 567
Period size: 160 Copynumber: 2.9 Consensus size: 159
51579595 TTACACTACA
* * * * *
51579605 AGGGTATTTTGTAATTTTAC-ACTACAAGGGTATTTCGATAATTTTACAAATCGGGGGTGTTTTG
1 AGGGTATTTGGTAATTTTACAAAT-CAAGGGTATTTAG-TAATTTTACAAATCGAGGGTGTTTCG
* * *
51579669 ATAATTTTACAAATCGAGGGCATTTCGGTAATTTTACAAATTGAGGTTATTTCGGTAATTTTACA
64 GTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATTGAGG-TATTTCGGTAATTTTACA
* * * *
51579734 AATCTAGGGTATTT-GGTAATTTTACAAATCT
128 AATCGAGGGTATTTCAGTAATTTCACAAATCG
* * * *
51579765 AGGGTATTTGGTAATTTTACAAATCGAGGGTGTTTTGTTAATTTTACAAATCAAGGGTGTTTCGG
1 AGGGTATTTGGTAATTTTACAAATCAAGGGTATTTAG-TAATTTTACAAATCGAGGGTGTTTCGG
* * *
51579830 TAATTTTACAAATTGAGGGTGTTTCGGTAATTTCACAAATTAGGGGTATTTCGGTAATTTTACAA
65 TAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATT-GAGGTATTTCGGTAATTTTACAA
51579895 ATCGAGGGTATTTCAGTAATTTCACAAATCG
129 ATCGAGGGTATTTCAGTAATTTCACAAATCG
* * ** * * * * *
51579926 GGGGTATTCCGGTACGTTTACAAATTAAGAGTATTTCAGTAATTTCAC-AATTGAGGGTATTTCG
1 AGGGTATT-TGGTAATTTTACAAATCAAGGGTATTT-AGTAATTTTACAAATCGAGGGTGTTTCG
* * *
51579990 GTAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC-AATCGAAGGTATTTAGGTAATTTTACA
64 GTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATTG-AGGTATTTCGGTAATTTTACA
51580054 AATCGAGGGTATTTCAGTAATTTC
128 AATCGAGGGTATTTCAGTAATTTC
51580078 TCTTTATTAT
Statistics
Matches: 269, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
159 1 0.00
160 166 0.62
161 73 0.27
162 28 0.10
163 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (159 bp):
AGGGTATTTGGTAATTTTACAAATCAAGGGTATTTAGTAATTTTACAAATCGAGGGTGTTTCGGT
AATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATTGAGGTATTTCGGTAATTTTACAAAT
CGAGGGTATTTCAGTAATTTCACAAATCG
Found at i:51581315 original size:25 final size:25
Alignment explanation
Indices: 51581287--51581366 Score: 99
Period size: 25 Copynumber: 3.2 Consensus size: 25
51581277 GCCTAGCCTC
*
51581287 TTTTAATAATTGGGGCAAAGCCCTT
1 TTTTAATAACTGGGGCAAAGCCCTT
*
51581312 TTTTGATTAACTGGGGCAAAGCCC-T
1 TTTT-AATAACTGGGGCAAAGCCCTT
* *
51581337 TTTCAGTAAACTGGGGCAAAGCCCTT
1 TTTTAAT-AACTGGGGCAAAGCCCTT
51581363 TTTT
1 TTTT
51581367 CACTTCCTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.04
25 24 0.51
26 21 0.45
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (25 bp):
TTTTAATAACTGGGGCAAAGCCCTT
Found at i:51581330 original size:26 final size:25
Alignment explanation
Indices: 51581297--51581366 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
51581287 TTTTAATAAT
*
51581297 TGGGGCAAAGCCCTTTTTTGATTAAC
1 TGGGGCAAAGCCCTTTTTTG-TAAAC
**
51581323 TGGGGCAAAGCCCTTTTCAGTAAAC
1 TGGGGCAAAGCCCTTTTTTGTAAAC
51581348 TGGGGCAAAGCCCTTTTTT
1 TGGGGCAAAGCCCTTTTTT
51581367 CACTTCCTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 21 0.54
26 18 0.46
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.31
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTTTGTAAAC
Found at i:51581448 original size:11 final size:10
Alignment explanation
Indices: 51581432--51581468 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
51581422 CATCTCATAA
51581432 CATATCATGT
1 CATATCATGT
51581442 GCATATCATGT
1 -CATATCATGT
51581453 CATATCATGT
1 CATATCATGT
51581463 -ATATCA
1 CATATCA
51581469 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:51581456 original size:21 final size:21
Alignment explanation
Indices: 51581398--51581462 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
51581388 ACCCAACCCA
* * *
51581398 TGCATATAACTAATATATCTTG
1 TGCATATCA-TAACATATCATG
*
51581420 TGCATCTCATAACATATCATG
1 TGCATATCATAACATATCATG
**
51581441 TGCATATCATGTCATATCATG
1 TGCATATCATAACATATCATG
51581462 T
1 T
51581463 ATATCAAAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 29 0.81
22 7 0.19
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.38
Consensus pattern (21 bp):
TGCATATCATAACATATCATG
Found at i:51584184 original size:35 final size:35
Alignment explanation
Indices: 51584135--51584204 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
51584125 CCAATCTGCG
51584135 TACTAGTCGATTTAAAAATCATATCTTGAGTTTCA
1 TACTAGTCGATTTAAAAATCATATCTTGAGTTTCA
*
51584170 TACTAGTCGCTTTAAAAATCATATCTTGAGTTTCA
1 TACTAGTCGATTTAAAAATCATATCTTGAGTTTCA
51584205 CAACTCGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (35 bp):
TACTAGTCGATTTAAAAATCATATCTTGAGTTTCA
Found at i:51588362 original size:27 final size:27
Alignment explanation
Indices: 51588314--51588366 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
51588304 CATTCTACCA
51588314 TACAAGGGTATTACGGTCATTTTACAC
1 TACAAGGGTATTACGGTCATTTTACAC
** *
51588341 TACAAGGGTATTTTGGTGATTTTACA
1 TACAAGGGTATTACGGTCATTTTACA
51588367 AACTAATGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (27 bp):
TACAAGGGTATTACGGTCATTTTACAC
Found at i:51605449 original size:30 final size:30
Alignment explanation
Indices: 51605415--51605475 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51605405 TCATTAACTC
51605415 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
51605445 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
51605475 A
1 A
51605476 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:51606705 original size:13 final size:13
Alignment explanation
Indices: 51606687--51606711 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51606677 TAATGGTATA
51606687 TTGAATCCATGAT
1 TTGAATCCATGAT
51606700 TTGAATCCATGA
1 TTGAATCCATGA
51606712 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:51608369 original size:200 final size:200
Alignment explanation
Indices: 51608026--51608402 Score: 754
Period size: 200 Copynumber: 1.9 Consensus size: 200
51608016 TGGATAAAAC
51608026 TTGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAA
1 TTGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAA
51608091 GCTTATGAGTATTCGAATATGAAATGATAGTATGGCGTAAAATTGAATTATTCATTGGAAAGTGA
66 GCTTATGAGTATTCGAATATGAAATGATAGTATGGCGTAAAATTGAATTATTCATTGGAAAGTGA
51608156 TGGATGTAGATTCGGCCAAGACCAAGTCTGTACATGATAGTATATGTGGTATGTGAAGTATATTT
131 TGGATGTAGATTCGGCCAAGACCAAGTCTGTACATGATAGTATATGTGGTATGTGAAGTATATTT
51608221 GAATA
196 GAATA
51608226 TTGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAA
1 TTGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAA
51608291 GCTTATGAGTATTCGAATATGAAATGATAGTATGGCGTAAAATTGAATTATTCATTGGAAAGTGA
66 GCTTATGAGTATTCGAATATGAAATGATAGTATGGCGTAAAATTGAATTATTCATTGGAAAGTGA
51608356 TGGATGTAGATTCGGCCAAGACCAAGTCTGTACATGATAGTATATGT
131 TGGATGTAGATTCGGCCAAGACCAAGTCTGTACATGATAGTATATGT
51608403 AAGGCCTAAT
Statistics
Matches: 177, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 177 1.00
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (200 bp):
TTGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAA
GCTTATGAGTATTCGAATATGAAATGATAGTATGGCGTAAAATTGAATTATTCATTGGAAAGTGA
TGGATGTAGATTCGGCCAAGACCAAGTCTGTACATGATAGTATATGTGGTATGTGAAGTATATTT
GAATA
Found at i:51608465 original size:47 final size:47
Alignment explanation
Indices: 51608402--51608830 Score: 700
Period size: 47 Copynumber: 9.1 Consensus size: 47
51608392 ATAGTATATG
51608402 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51608449 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
51608498 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51608545 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
51608592 TAAGGTCTAATAGTCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
51608641 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51608686 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51608733 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
51608780 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51608827 TAAG
1 TAAG
51608831 TCCCGAAGGG
Statistics
Matches: 358, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
45 44 0.12
47 227 0.63
49 87 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51609898 original size:48 final size:48
Alignment explanation
Indices: 51609827--51610179 Score: 593
Period size: 48 Copynumber: 7.4 Consensus size: 48
51609817 GGGTGTTACA
51609827 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
* *
51609875 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCTAATGGCTAA
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
** *
51609923 TGTGAAATATACATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
**
51609971 TGTGAAATATACATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
* *
51610019 TGTGAAATATGTATGAGATATG--TGTGTGGTAAAGCCGAATGGCTAA
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
*
51610065 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
51610113 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
*
51610161 TGTGAAATATGTAGGAGAT
1 TGTGAAATATGTATGAGAT
51610180 GTGTGTATAT
Statistics
Matches: 288, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 43 0.15
48 245 0.85
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
Found at i:51610120 original size:142 final size:142
Alignment explanation
Indices: 51609826--51610185 Score: 630
Period size: 142 Copynumber: 2.5 Consensus size: 142
51609816 GGGGTGTTAC
51609826 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
* *
51609891 GATATGTATATGTGGTAAAGCCTAATGGCTAATGTGAAATATACATGAGATATGTATATGTGGTA
66 GATATG--TGTGTGGTAAAGCCGAATGGCTAATGTGAAATATACATGAGATATGTATATGTGGTA
51609956 AAGCCGAATGGCTA
129 AAGCCGAATGGCTA
**
51609970 ATGTGAAATATACATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
*
51610035 GATATGTGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAA
66 GATATGTGTGTGGTAAAGCCGAATGGCTAATGTGAAATATACATGAGATATGTATATGTGGTAAA
51610100 GCCGAATGGCTA
131 GCCGAATGGCTA
* *
51610112 GTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
*
51610177 GATGTGTGT
66 GATATGTGT
51610186 ATATTGTGGC
Statistics
Matches: 206, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
142 137 0.67
144 69 0.33
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (142 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
GATATGTGTGTGGTAAAGCCGAATGGCTAATGTGAAATATACATGAGATATGTATATGTGGTAAA
GCCGAATGGCTA
Found at i:51618574 original size:68 final size:68
Alignment explanation
Indices: 51618465--51618601 Score: 265
Period size: 68 Copynumber: 2.0 Consensus size: 68
51618455 TATACGAACT
*
51618465 TACCTCAATTATAAAGATATCAAAATAAGATCAGCTAATCCGAGGCTTTTGTTTTTCCTTGATCT
1 TACCTCAATTATAAAGACATCAAAATAAGATCAGCTAATCCGAGGCTTTTGTTTTTCCTTGATCT
51618530 AGA
66 AGA
51618533 TACCTCAATTATAAAGACATCAAAATAAGATCAGCTAATCCGAGGCTTTTGTTTTTCCTTGATCT
1 TACCTCAATTATAAAGACATCAAAATAAGATCAGCTAATCCGAGGCTTTTGTTTTTCCTTGATCT
51618598 AGA
66 AGA
51618601 T
1 T
51618602 CTGTACGAAG
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (68 bp):
TACCTCAATTATAAAGACATCAAAATAAGATCAGCTAATCCGAGGCTTTTGTTTTTCCTTGATCT
AGA
Found at i:51619363 original size:87 final size:87
Alignment explanation
Indices: 51619259--51619435 Score: 345
Period size: 87 Copynumber: 2.0 Consensus size: 87
51619249 TAACTTTAAA
51619259 AATCACTTAAGCTATGTCCATATATGCCCGCCAACTAATCAAATGGTTTAATTACCATTTAAGTC
1 AATCACTTAAGCTATGTCCATATATGCCCGCCAACTAATCAAATGGTTTAATTACCATTTAAGTC
51619324 ACTCATATCAAAAATCCATAGC
66 ACTCATATCAAAAATCCATAGC
51619346 AATCACTTAAGCTATGTCCATATATGCCCGCCAACTAATCAAATGGTTTAATTACCATTTAAGTC
1 AATCACTTAAGCTATGTCCATATATGCCCGCCAACTAATCAAATGGTTTAATTACCATTTAAGTC
*
51619411 ACTCATATTAAAAATCCATAGC
66 ACTCATATCAAAAATCCATAGC
51619433 AAT
1 AAT
51619436 TTAACATCTT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 89 1.00
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (87 bp):
AATCACTTAAGCTATGTCCATATATGCCCGCCAACTAATCAAATGGTTTAATTACCATTTAAGTC
ACTCATATCAAAAATCCATAGC
Found at i:51621286 original size:39 final size:39
Alignment explanation
Indices: 51621238--51621324 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
51621228 CCGACAATTA
51621238 GCCTGCTAGGTAAAAACCTAAACTTATCACCGGCACGAG
1 GCCTGCTAGGTAAAAACCTAAACTTATCACCGGCACGAG
* * *
51621277 GCCTACTAGGTATAAACCTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTAAAAACCTAAACTTATCACCGGCACGAG
51621316 GCCTGCTAG
1 GCCTGCTAG
51621325 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
GCCTGCTAGGTAAAAACCTAAACTTATCACCGGCACGAG
Found at i:51628718 original size:74 final size:74
Alignment explanation
Indices: 51628632--51628774 Score: 277
Period size: 74 Copynumber: 1.9 Consensus size: 74
51628622 AATTTCAATG
51628632 ATCAAAATTATATATATAACATATACTTTCATGTACTAAATTCAAGATGGCCGAATATAAATATA
1 ATCAAAATTATATATATAACATATACTTTCATGTACTAAATTCAAGATGGCCGAATATAAATATA
51628697 CACATAATT
66 CACATAATT
*
51628706 ATCATAATTATATATATAACATATACTTTCATGTACTAAATTCAAGATGGCCGAATATAAATATA
1 ATCAAAATTATATATATAACATATACTTTCATGTACTAAATTCAAGATGGCCGAATATAAATATA
51628771 CACA
66 CACA
51628775 ACCACATTTC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (74 bp):
ATCAAAATTATATATATAACATATACTTTCATGTACTAAATTCAAGATGGCCGAATATAAATATA
CACATAATT
Found at i:51628982 original size:39 final size:39
Alignment explanation
Indices: 51628939--51629025 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
51628929 CCAGTAATTA
51628939 GCCTGCTAGGTATAAACCTGAACTTATCACCAGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCAGCACGAG
*
51628978 GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCAGCACGAG
*
51629017 GCCTACTAG
1 GCCTGCTAG
51629026 ACATTAAGTC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCAGCACGAG
Found at i:51630775 original size:26 final size:26
Alignment explanation
Indices: 51630746--51630853 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
51630736 TGATACAAAT
51630746 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51630772 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51630798 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51630824 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51630850 TGAT
1 TGAT
51630854 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51632355 original size:26 final size:26
Alignment explanation
Indices: 51632326--51632378 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
51632316 TTTACAGTTT
51632326 TACCCCTAAGAGATAAATT-ACCGAAA
1 TACCCCTAAG-GATAAATTGACCGAAA
* * *
51632352 TACCCTTAAGGTTAAATTGACCTAAA
1 TACCCCTAAGGATAAATTGACCGAAA
51632378 T
1 T
51632379 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (26 bp):
TACCCCTAAGGATAAATTGACCGAAA
Found at i:51639076 original size:40 final size:40
Alignment explanation
Indices: 51639001--51639177 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
51638991 ACCCGAGTAT
* * *
51639001 CTTCGGGAT-TTAG-CCGAATATAACAACTCGTACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
51639040 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
51639080 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
51639120 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
51639160 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
51639178 TTATCATCCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 102 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:51646927 original size:47 final size:47
Alignment explanation
Indices: 51646849--51648206 Score: 2275
Period size: 47 Copynumber: 28.6 Consensus size: 47
51646839 CCCTTCGGGA
* * * * * *
51646849 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
51646896 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51646943 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51646990 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647037 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647084 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647131 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647178 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647225 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647272 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647319 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647366 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647413 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647460 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647507 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647554 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647601 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647648 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
51647695 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
51647742 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
51647789 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
51647838 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
51647887 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
51647936 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
51647985 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
51648034 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
51648083 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
51648132 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
51648181 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
51648207 CACAATTATC
Statistics
Matches: 1292, Mismatches: 17, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
47 906 0.70
49 386 0.30
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:51650647 original size:40 final size:39
Alignment explanation
Indices: 51650558--51650658 Score: 152
Period size: 39 Copynumber: 2.6 Consensus size: 39
51650548 GGCTGTCACA
*
51650558 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTGAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTGAACCG
51650597 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-T-TGAACCG
51650637 GG-TCAAGTCCCGAAGGCATTTG
1 GGCT-AAGTCCCGAAGGCATTTG
51650659 AGCAAGTAGT
Statistics
Matches: 58, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
39 31 0.53
40 26 0.45
41 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTGAACCG
Found at i:51657711 original size:88 final size:88
Alignment explanation
Indices: 51657599--51657777 Score: 313
Period size: 88 Copynumber: 2.0 Consensus size: 88
51657589 ATTGTATAAG
* * *
51657599 TTCAAACTGATGATAAGTGGCATCGTAAGAACATTTACATTGTGAGAAGGATAACTTATGGCAGT
1 TTCAAACTGATGATAAGTGCCATCGTAAGAACATTTACATTGTGAGAAGGACAACTTACGGCAGT
51657664 AAATAATCTAAACGAGTTCGTAA
66 AAATAATCTAAACGAGTTCGTAA
*
51657687 TTCAAACTGATGATAAGTGCCATCGTAAGAACATTTACATTGTGAGAAGGACAACTTACGTCAGT
1 TTCAAACTGATGATAAGTGCCATCGTAAGAACATTTACATTGTGAGAAGGACAACTTACGGCAGT
*
51657752 AGATAATCTAAACGAGTTCGTAA
66 AAATAATCTAAACGAGTTCGTAA
51657775 TTC
1 TTC
51657778 CATAAAAGAA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (88 bp):
TTCAAACTGATGATAAGTGCCATCGTAAGAACATTTACATTGTGAGAAGGACAACTTACGGCAGT
AAATAATCTAAACGAGTTCGTAA
Found at i:51663618 original size:33 final size:33
Alignment explanation
Indices: 51663576--51663641 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
51663566 ATACATCTAG
51663576 TTTAATCAAGATTATTTACAAATGTATAATTGT
1 TTTAATCAAGATTATTTACAAATGTATAATTGT
51663609 TTTAATCAAGATTATTTACAAATGTATAATTGT
1 TTTAATCAAGATTATTTACAAATGTATAATTGT
51663642 GTTTTACTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.45
Consensus pattern (33 bp):
TTTAATCAAGATTATTTACAAATGTATAATTGT
Found at i:51665966 original size:25 final size:25
Alignment explanation
Indices: 51665938--51665985 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
51665928 TATCTTACCG
*
51665938 TTTCATTATAT-ACATATATCATGCA
1 TTTCAATATATCA-ATATATCATGCA
51665963 TTTCAATATATCAATATATCATG
1 TTTCAATATATCAATATATCATG
51665986 TACCATCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.38, C:0.15, G:0.04, T:0.44
Consensus pattern (25 bp):
TTTCAATATATCAATATATCATGCA
Found at i:51680850 original size:5 final size:5
Alignment explanation
Indices: 51680832--51680862 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
51680822 AGGGTTTTTT
51680832 GGCCC GGACCC GGCCC GGCCC GGCCC GGCCC
1 GGCCC GG-CCC GGCCC GGCCC GGCCC GGCCC
51680863 AAATTATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.03, C:0.58, G:0.39, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:51680906 original size:15 final size:16
Alignment explanation
Indices: 51680886--51680918 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
51680876 ATATATATAT
51680886 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
51680901 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
51680918 T
1 T
51680919 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:51680991 original size:21 final size:22
Alignment explanation
Indices: 51680965--51681023 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
51680955 GTTTTAAGAA
*
51680965 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
51680986 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
51681008 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
51681024 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:51681002 original size:33 final size:35
Alignment explanation
Indices: 51680939--51681004 Score: 91
Period size: 33 Copynumber: 1.9 Consensus size: 35
51680929 TTTATTATAT
*
51680939 TATTATTTTGTGTATTGTTTTAAGAATTGTTTTAG
1 TATTATTTTGTATATTGTTTTAAGAATTGTTTTAG
* *
51680974 TATTATTTT-TAT-TTGTTTTAATATTTGTTTT
1 TATTATTTTGTATATTGTTTTAAGAATTGTTTT
51681005 TATGTTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 17 0.61
34 2 0.07
35 9 0.32
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (35 bp):
TATTATTTTGTATATTGTTTTAAGAATTGTTTTAG
Found at i:51681038 original size:26 final size:24
Alignment explanation
Indices: 51680994--51681042 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
51680984 ATTTGTTTTA
*
51680994 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
51681018 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
51681043 CTTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:51682534 original size:12 final size:12
Alignment explanation
Indices: 51682517--51682541 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51682507 AGTAAAATGC
51682517 TATATATATAAA
1 TATATATATAAA
51682529 TATATATATAAA
1 TATATATATAAA
51682541 T
1 T
51682542 CTAAATTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATATATAAA
Found at i:51688932 original size:21 final size:21
Alignment explanation
Indices: 51688880--51688935 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
51688870 AAACAGGGGC
*
51688880 ACACACCCGTATGGAAAGGCG
1 ACACACCCGTGTGGAAAGGCG
*
51688901 ACACGCCCGTGTGGAAAGGCG
1 ACACACCCGTGTGGAAAGGCG
51688922 ACACACCCGTGTGG
1 ACACACCCGTGTGG
51688936 CCATTTTGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.27, C:0.30, G:0.32, T:0.11
Consensus pattern (21 bp):
ACACACCCGTGTGGAAAGGCG
Found at i:51690349 original size:49 final size:49
Alignment explanation
Indices: 51690286--51690409 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
51690276 GTCAAAGTCA
* * * *
51690286 ATGCCATGTGCCAGACAGGTCTTACACTAACTTTCATGTATTGAG-GCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATCTATCG-GTGCCG
* * ** *
51690335 ATGCCATGTTCCAGACAGGTTTTACACTGGCTCTCATCTATCGGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATCTATCGGTGCCG
*
51690384 ATGCCATGTCCCAAACAGGTCTTACA
1 ATGCCATGTCCCAGACAGGTCTTACA
51690410 ATGACACACA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 1 0.02
49 62 0.98
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATCTATCGGTGCCG
Found at i:51690547 original size:46 final size:48
Alignment explanation
Indices: 51690432--51690646 Score: 237
Period size: 46 Copynumber: 4.6 Consensus size: 48
51690422 AAGCTGACGC
*
51690432 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
* * * * *
51690480 CATGTCCCAGACATGTCTTACACTAGCTT-T-TGTCTTAATGTTGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
* * *
51690526 CATGTCCCGGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
* * *
51690574 CATGTCCCAGACATGTCTTACACTGGCTCTCGTA-A---TGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-T-GTATATCTTGAGGCTGATG
*
51690620 CATGTCCCCA-ACATGTCTTACATTAGC
1 CATGT-CCCAGACATGTCTTACACTAGC
51690647 ACACATATCA
Statistics
Matches: 144, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
46 67 0.47
47 6 0.04
48 66 0.46
49 2 0.01
50 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
Found at i:51690624 original size:94 final size:92
Alignment explanation
Indices: 51690432--51690646 Score: 272
Period size: 94 Copynumber: 2.3 Consensus size: 92
51690422 AAGCTGACGC
*
51690432 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
* * *
51690497 TTACACTAGCTTTTGTCTTAATGTTGATA
66 TTACACTAGC--TTCTCGTAATGTCGATA
* * *
51690526 CATGTCCCGGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
* *
51690591 TTACACTGGC-TCTCGTAATGTGGCCGATG
66 TTACACTAGCTTCTCGTAATGT---CGATA
*
51690620 CATGTCCCCA-ACATGTCTTACATTAGC
1 CATGT-CCCAGACATGTCTTACACTAGC
51690647 ACACATATCA
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
91 9 0.09
94 93 0.89
95 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
TTACACTAGCTTCTCGTAATGTCGATA
Found at i:51699136 original size:24 final size:24
Alignment explanation
Indices: 51699081--51699137 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
51699071 GCCTACCACT
51699081 TGTTGTCACCAACTGGTGTTCCTGA
1 TGTT-TCACCAACTGGTGTTCCTGA
** *
51699106 TACTTCACCAACTGGTGATT-CTGC
1 TGTTTCACCAACTGGTG-TTCCTGA
51699130 TGTTTCAC
1 TGTTTCAC
51699138 ACTCTGGTTC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (24 bp):
TGTTTCACCAACTGGTGTTCCTGA
Found at i:51705632 original size:32 final size:32
Alignment explanation
Indices: 51705591--51705652 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
51705581 AAGGAAAAAA
* *
51705591 GTTAGAGAAAATAACTATTAAAGTTTTCACCT
1 GTTAGAGAAAAAAAATATTAAAGTTTTCACCT
*
51705623 GTTAGAGAAAAAAAATATTAGAGTTTTCAC
1 GTTAGAGAAAAAAAATATTAAAGTTTTCAC
51705653 TTGAATTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.32
Consensus pattern (32 bp):
GTTAGAGAAAAAAAATATTAAAGTTTTCACCT
Found at i:51709284 original size:50 final size:50
Alignment explanation
Indices: 51709201--51709450 Score: 252
Period size: 50 Copynumber: 5.0 Consensus size: 50
51709191 TAACAAGTTT
*
51709201 TTAGGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * ** * * *
51709251 TTAGGTCGCATGTGTAGTACATAA-TGCATGCTACTATGCATACCCGACAAC
1 TTAGGTCACGTGTGTAGTAC-TAAGTGCAGGCTACTACGTGTACCAGA-TAG
* * * *
51709302 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
** *
51709352 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * * *
51709402 TT-GGTTACATGTGTAGTATTAAGTGTAGGCTACTATGCGTACCAAATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
51709451 CTTCAGTTAC
Statistics
Matches: 158, Mismatches: 39, Indels: 7
0.77 0.19 0.03
Matches are distributed among these distances:
49 37 0.23
50 84 0.53
51 37 0.23
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:51709335 original size:101 final size:101
Alignment explanation
Indices: 51709206--51709387 Score: 294
Period size: 101 Copynumber: 1.8 Consensus size: 101
51709196 AGTTTTTAGG
* *
51709206 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
*
51709271 ATAA-TGCATGCTACTATGCATACCCGACAACTTCGA
66 -TAAGTGCAGGCTACTATGCATACCCGACAACTTCGA
* * *
51709307 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
51709372 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
51709388 CGTGTACTGG
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
100 3 0.04
101 71 0.96
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGACAACTTCGA
Done.