Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 172 of 276
Found at i:56390645 original size:27 final size:27
Alignment explanation
Indices: 56390626--56390752 Score: 159
Period size: 27 Copynumber: 4.7 Consensus size: 27
56390616 CCTTATATGA
56390626 TAAAATGACTGAAATACCCTCATAGGG
1 TAAAATGACTGAAATACCCTCATAGGG
56390653 TAAAATGA-TCGAAATACCCTCATAGGG
1 TAAAATGACT-GAAATACCCTCATAGGG
*
56390680 TAAAATGACCGAAATACGCC-CATAGGG
1 TAAAATGACTGAAATAC-CCTCATAGGG
* * **
56390707 TAGAATGACCGAAATACCCTTGTAGGG
1 TAAAATGACTGAAATACCCTCATAGGG
**
56390734 TAAAATGACTTTAATACCC
1 TAAAATGACTGAAATACCC
56390753 CGATAAGGAA
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.03
27 83 0.94
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCATAGGG
Found at i:56390685 original size:54 final size:53
Alignment explanation
Indices: 56390626--56390753 Score: 175
Period size: 54 Copynumber: 2.4 Consensus size: 53
56390616 CCTTATATGA
*
56390626 TAAAATGACTGAAATACCCTCATAGGGTAAAATGATCGAAATACCCTCATAGGG
1 TAAAATGACTGAAATACCC-CATAGGGTAAAATGACCGAAATACCCTCATAGGG
* * **
56390680 TAAAATGACCGAAATACGCCCATAGGGTAGAATGACCGAAATACCCTTGTAGGG
1 TAAAATGACTGAAATAC-CCCATAGGGTAAAATGACCGAAATACCCTCATAGGG
**
56390734 TAAAATGACTTTAATACCCC
1 TAAAATGACTGAAATACCCC
56390754 GATAAGGAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
53 3 0.05
54 60 0.92
55 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (53 bp):
TAAAATGACTGAAATACCCCATAGGGTAAAATGACCGAAATACCCTCATAGGG
Found at i:56391141 original size:18 final size:18
Alignment explanation
Indices: 56391112--56391170 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
56391102 TCTGTTTGCA
*
56391112 TACTACACTGATTACTGT
1 TACTGCACTGATTACTGT
* *
56391130 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACT-GT
*
56391148 TACTGCACTGATTACTAT
1 TACTGCACTGATTACTGT
56391166 TACTG
1 TACTG
56391171 AAATGGGCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.39
Consensus pattern (18 bp):
TACTGCACTGATTACTGT
Found at i:56396277 original size:27 final size:27
Alignment explanation
Indices: 56396237--56396323 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
56396227 TCTTATGTGA
56396237 TAAAATGACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
** *
56396264 TAAAATGATTGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
*
56396291 TAAAATGACCGAAATACACCT-GTAGGG
1 TAAAATGACCGAAATAC-CCTCATAGGG
56396318 TAAAAT
1 TAAAAT
56396324 AACTGTAATA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
27 50 0.96
28 2 0.04
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCATAGGG
Found at i:56396333 original size:27 final size:26
Alignment explanation
Indices: 56396237--56396352 Score: 106
Period size: 27 Copynumber: 4.3 Consensus size: 26
56396227 TCTTATGTGA
* *
56396237 TAAAATGACCGAAATACCCTCATAGGG
1 TAAAATGACTGAAATACCC-CGTAGGG
* *
56396264 TAAAATGATTGAAATACCCCCATAGGG
1 TAAAATGACTGAAATA-CCCCGTAGGG
* *
56396291 TAAAATGACCGAAATACACCTGTAGGG
1 TAAAATGACTGAAATAC-CCCGTAGGG
* * * *
56396318 TAAAATAACTGTAATATCCCGGTAAGG
1 TAAAATGACTGAAATA-CCCCGTAGGG
56396345 TAAAATGA
1 TAAAATGA
56396353 TAGATTTGTT
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.01
27 69 0.93
28 4 0.05
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (26 bp):
TAAAATGACTGAAATACCCCGTAGGG
Found at i:56396347 original size:54 final size:54
Alignment explanation
Indices: 56396237--56396352 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
56396227 TCTTATGTGA
* * *
56396237 TAAAATGACCGAAATACCCTCATAGGGTAAAATGATTGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGGTAAAATAACTGAAATACCCCCATAAGG
* * * **
56396291 TAAAATGACCGAAATACACCT-GTAGGGTAAAATAACTGTAATATCCCGGTAAGG
1 TAAAATGACCGAAATAC-CCTCATAGGGTAAAATAACTGAAATACCCCCATAAGG
56396345 TAAAATGA
1 TAAAATGA
56396353 TAGATTTGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 50 0.94
55 3 0.06
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (54 bp):
TAAAATGACCGAAATACCCTCATAGGGTAAAATAACTGAAATACCCCCATAAGG
Found at i:56396431 original size:23 final size:23
Alignment explanation
Indices: 56396388--56396437 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
56396378 CTGTATCTGA
56396388 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
56396411 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
56396434 GCAT
1 GCAT
56396438 TACACGGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:56406667 original size:65 final size:65
Alignment explanation
Indices: 56406586--56406716 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
56406576 GATTTCATCA
56406586 TCAACAATTGATCTCTTATCAATTAATTCAACATGGTATCCGGGTCAAGAAGAATTTTCGATCTC
1 TCAACAATTGATCTCTTATCAATTAATTCAACATGGTATCCGGGTCAAGAAGAATTTTCGATCTC
56406651 TCAACAATTGATCTCTTATCAATTAATTCAACATGGTATCCGGGTCAAGAAGAATTTTCGATCTC
1 TCAACAATTGATCTCTTATCAATTAATTCAACATGGTATCCGGGTCAAGAAGAATTTTCGATCTC
56406716 T
1 T
56406717 TACTCTGATA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (65 bp):
TCAACAATTGATCTCTTATCAATTAATTCAACATGGTATCCGGGTCAAGAAGAATTTTCGATCTC
Found at i:56416872 original size:17 final size:18
Alignment explanation
Indices: 56416834--56416872 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
56416824 TTAAAAACAA
56416834 TTTTGATAATTTTTTAAT
1 TTTTGATAATTTTTTAAT
56416852 TTTTGA-AATTATTTT-AT
1 TTTTGATAATT-TTTTAAT
56416869 TTTT
1 TTTT
56416873 TTGAAACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (18 bp):
TTTTGATAATTTTTTAAT
Found at i:56416873 original size:18 final size:18
Alignment explanation
Indices: 56416834--56416878 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
56416824 TTAAAAACAA
56416834 TTTTGATAATTTTTTA-AT
1 TTTTGA-AATTTTTTATAT
*
56416852 TTTTGAAATTATTTTATTT
1 TTTTGAAATT-TTTTATAT
56416871 TTTTGAAA
1 TTTTGAAA
56416879 CTTTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 11 0.46
19 9 0.38
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (18 bp):
TTTTGAAATTTTTTATAT
Found at i:56417472 original size:24 final size:24
Alignment explanation
Indices: 56417443--56417498 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
56417433 CCATGTACAA
*
56417443 AGCCCAAAACTCATTTACATTTAC
1 AGCCCAAAACCCATTTACATTTAC
** * *
56417467 AGCCCATTACCCGTTTACATTTGC
1 AGCCCAAAACCCATTTACATTTAC
56417491 A-CCCAAAA
1 AGCCCAAAA
56417499 GGCCTAAAAC
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.34, C:0.32, G:0.07, T:0.27
Consensus pattern (24 bp):
AGCCCAAAACCCATTTACATTTAC
Found at i:56418760 original size:19 final size:18
Alignment explanation
Indices: 56418738--56418826 Score: 63
Period size: 19 Copynumber: 4.6 Consensus size: 18
56418728 AATACTTCAT
56418738 ATATTATTTATTTTTATAA
1 ATATTATTTATTTTTAT-A
* * **
56418757 ATATTAGTTATATAAAGTA
1 ATATTATTTATTTTTA-TA
56418776 ATA-TATATTATTTTTATA
1 ATATTAT-TTATTTTTATA
56418794 ATCCATTATATTATTTTTATA
1 AT--ATTAT-TTATTTTTATA
*
56418815 CATTTTATTTAT
1 -ATATTATTTAT
56418827 AAATTATATT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
18 6 0.11
19 26 0.47
20 6 0.11
21 15 0.27
22 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.57
Consensus pattern (18 bp):
ATATTATTTATTTTTATA
Found at i:56432585 original size:220 final size:220
Alignment explanation
Indices: 56432198--56432621 Score: 713
Period size: 220 Copynumber: 1.9 Consensus size: 220
56432188 AGATCTGACC
* * * * **
56432198 TTCAGGTGTTTACGTTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
1 TTCACGTGTTTACGCTGAAGCAAATCCAAAATGATTTGGCATCTCTAAATTGTCAGAGAACAAAT
* *
56432263 CGAAGAAACAGATTTGGCATCTCCATATTCGACGGTGAGCAGATTGAAGACATAGCAGATCTAAC
66 CGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATTGAAGACATAGCAGATCTAAC
* * *
56432328 CTTCGGATGTTTTCACATTGAAGTATATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCA
131 CTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGGAGCA
56432393 GATCGAAGACATAGAAGATTTGGCT
196 GATCGAAGACATAGAAGATTTGGCT
*
56432418 TTCACGTGTTTACGCTGAAGCAAATCTAAAATGATTTGGCATCTCTAAATTGTCAGAGAACAAAT
1 TTCACGTGTTTACGCTGAAGCAAATCCAAAATGATTTGGCATCTCTAAATTGTCAGAGAACAAAT
56432483 CGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATTGAAGACATAGCAGATCTAAC
66 CGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATTGAAGACATAGCAGATCTAAC
** *
56432548 CTTCGGATGTTTTTGCATCGAGGTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGGAGCA
131 CTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGGAGCA
56432613 GATCGAAGA
196 GATCGAAGA
56432622 TAGCAAATTT
Statistics
Matches: 189, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
220 189 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (220 bp):
TTCACGTGTTTACGCTGAAGCAAATCCAAAATGATTTGGCATCTCTAAATTGTCAGAGAACAAAT
CGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATTGAAGACATAGCAGATCTAAC
CTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGGAGCA
GATCGAAGACATAGAAGATTTGGCT
Found at i:56432656 original size:44 final size:44
Alignment explanation
Indices: 56432608--56432755 Score: 224
Period size: 44 Copynumber: 3.4 Consensus size: 44
56432598 CATTTACAAG
* * *
56432608 GAGCAGATCGAAGATAGCAAATTTGGCGTCTCCGTATTGTCAGA
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
56432652 GAGCAAATCAAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
56432696 GATCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTATCAGA
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
*
56432740 GAGCAGATCGAAGATA
1 GAGCAGATCAAAGATA
56432756 TCAACATAGC
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 93 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (44 bp):
GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
Found at i:56434862 original size:27 final size:26
Alignment explanation
Indices: 56434806--56434985 Score: 197
Period size: 27 Copynumber: 6.7 Consensus size: 26
56434796 TTTAGTTTAC
*
56434806 TAAAATTACTAAAATACCCTC-AATTG
1 TAAAATTACT-AAATACCCTCGATTTG
*
56434832 TAAAATTACTAAAGTAACCCT-GATTTA
1 TAAAATTACTAAA-T-ACCCTCGATTTG
* *
56434859 TAAAATTATCGAAATACCGTCGA-TTG
1 TAAAATTA-CTAAATACCCTCGATTTG
56434885 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACT-AAATACCCTCGATTTG
*
56434912 TAAAATTATCGAAATACCCTC-AGTTTG
1 TAAAATTA-CTAAATACCCTCGA-TTTG
*
56434939 CAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACT-AAATACCCTCGATTTG
56434966 TAAAATTACTAAAATACCCT
1 TAAAATTACT-AAATACCCT
56434986 TGTAGGGTAA
Statistics
Matches: 131, Mismatches: 12, Indels: 21
0.80 0.07 0.13
Matches are distributed among these distances:
25 4 0.03
26 38 0.29
27 83 0.63
28 6 0.05
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (26 bp):
TAAAATTACTAAATACCCTCGATTTG
Found at i:56434962 original size:54 final size:54
Alignment explanation
Indices: 56434817--56434973 Score: 232
Period size: 53 Copynumber: 2.9 Consensus size: 54
56434807 AAAATTACTA
*
56434817 AAATACCCTCA-ATTGTAAAATTACT-AAAGTAACCCT-GATTTATAAAATTATCG
1 AAATACCCTCAGATTGTAAAATTACTGAAA-T-ACCCTCGATTTGTAAAATTATCG
*
56434870 AAATACCGTC-GATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCG
1 AAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCG
* *
56434923 AAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATTTGTAAAATTA
1 AAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTA
56434974 CTAAAATACC
Statistics
Matches: 95, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
52 5 0.05
53 49 0.52
54 41 0.43
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCG
Found at i:56434981 original size:54 final size:54
Alignment explanation
Indices: 56434806--56434985 Score: 228
Period size: 53 Copynumber: 3.4 Consensus size: 54
56434796 TTTAGTTTAC
*
56434806 TAAAATTA-CTAAAATACCCTCA-ATTGTAAAATTACT-AAAGTAACCCT-GATTTA
1 TAAAATTATC-AAAATACCCTCAGATTGTAAAATTACTGAAA-T-ACCCTCGATTTG
* *
56434859 TAAAATTATCGAAATACCGTC-GATTGTAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTATCAAAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTG
* * *
56434912 TAAAATTATCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTATCAAAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTG
56434966 TAAAATTA-CTAAAATACCCT
1 TAAAATTATC-AAAATACCCT
56434986 TGTAGGGTAA
Statistics
Matches: 114, Mismatches: 7, Indels: 11
0.86 0.05 0.08
Matches are distributed among these distances:
52 5 0.04
53 58 0.51
54 51 0.45
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
TAAAATTATCAAAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTG
Found at i:56434995 original size:27 final size:27
Alignment explanation
Indices: 56434969--56435166 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
56434959 CGATTTGTAA
* *
56434969 AATTACTAAAATACCCTTGTAGGGTAA
1 AATTACTAAAATACCCCTGTAGGGTAG
* *
56434996 AATTACTAAAATACCACTATAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
* *
56435023 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-AAAATACCCCTGTAGGGTAG
** * *
56435050 AATTACCGAAATACCCTTATAGGGTA-
1 AATTACTAAAATACCCCTGTAGGGTAG
* **
56435076 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
56435103 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
56435130 AATTACTGAAAA-ACCCCTGTAGGGTAG
1 AATTACT-AAAATACCCCTGTAGGGTAG
56435157 AATTACTAAA
1 AATTACTAAA
56435167 CAACAAAAAA
Statistics
Matches: 151, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
26 27 0.18
27 120 0.79
28 4 0.03
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTAAAATACCCCTGTAGGGTAG
Found at i:56434998 original size:54 final size:53
Alignment explanation
Indices: 56434831--56435118 Score: 246
Period size: 54 Copynumber: 5.4 Consensus size: 53
56434821 ACCCTCAATT
* * * **
56434831 GTAAAATTACT-AAAGTAACCCTGATTTATAAAATTATCGAAATACCGTCG-ATT
1 GTAAAATTACTGAAA-T-ACCCTGATTTGTAAAATTATCGAAATACCCTTGTAGG
* **
56434884 GTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAGT-TT
1 GTAAAATTACTGAAATACCCT-GATTTGTAAAATTATCGAAATACCCT-TGTAGG
* *
56434938 GCAAAATTACTGAAATACCCTCGATTTGTAAAATTA-CTAAAATACCCTTGTAGG
1 GTAAAATTACTGAAATACCCT-GATTTGTAAAATTATC-GAAATACCCTTGTAGG
* ** *
56434992 GTAAAATTACTAAAATACCACT-ATAGGGTAGAATTATCGAAATACCCTTGTAGG
1 GTAAAATTACTGAAATACC-CTGAT-TTGTAAAATTATCGAAATACCCTTGTAGG
* * * ** * *
56435046 GTAGAATTACCGAAATACCCTTATAGGGTAAAA-TACCGAAATACCCCTGTAGG
1 GTAAAATTACTGAAATACCCTGAT-TTGTAAAATTATCGAAATACCCTTGTAGG
* *
56435099 GTAGAATTACTAAAATACCC
1 GTAAAATTACTGAAATACCC
56435119 CTGTAGGGTA
Statistics
Matches: 203, Mismatches: 22, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
52 5 0.02
53 79 0.39
54 116 0.57
55 3 0.01
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.29
Consensus pattern (53 bp):
GTAAAATTACTGAAATACCCTGATTTGTAAAATTATCGAAATACCCTTGTAGG
Found at i:56435124 original size:80 final size:81
Alignment explanation
Indices: 56434977--56435162 Score: 250
Period size: 80 Copynumber: 2.3 Consensus size: 81
56434967 AAAATTACTA
* * *
56434977 AAATACCCTTGTAGGGTAAAATTACTAAAATACCACTATAGGGTAGAATTATCGAAATACCCTTG
1 AAATACCCTTGTAGGGTAAAATTACCAAAATACCACTATAGGGTAGAATTATCAAAATACCCCTG
56435042 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACCG
* * * *
56435058 AAATACCCTTATAGGGTAAAA-TACCGAAATACCCCTGTAGGGTAGAATTA-CTAAAATACCCCT
1 AAATACCCTTGTAGGGTAAAATTACCAAAATACCACTATAGGGTAGAATTATC-AAAATACCCCT
*
56435121 GTAGGGTAGAATTACTG
65 GTAGGGTAGAATTACCG
* * *
56435138 AAAAACCCCTGTAGGGTAGAATTAC
1 AAATACCCTTGTAGGGTAAAATTAC
56435163 TAAACAACAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 67 0.74
81 23 0.25
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (81 bp):
AAATACCCTTGTAGGGTAAAATTACCAAAATACCACTATAGGGTAGAATTATCAAAATACCCCTG
TAGGGTAGAATTACCG
Found at i:56435536 original size:38 final size:38
Alignment explanation
Indices: 56435494--56435571 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
56435484 TTGAAATTAC
*
56435494 ATGGCTTGAATGTCACTTGATAGAACTATAAAACTCTT
1 ATGGCTTGAATATCACTTGATAGAACTATAAAACTCTT
56435532 ATGGCTTGAATATCACTTGATAGAACTATAAAACTCTT
1 ATGGCTTGAATATCACTTGATAGAACTATAAAACTCTT
56435570 AT
1 AT
56435572 ACAAAACTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (38 bp):
ATGGCTTGAATATCACTTGATAGAACTATAAAACTCTT
Found at i:56441844 original size:40 final size:41
Alignment explanation
Indices: 56441785--56441922 Score: 134
Period size: 41 Copynumber: 3.4 Consensus size: 41
56441775 TTAGTGGCCT
* *
56441785 TTTTTTCATAAATGCCGCAAAAGG-TAAAACAATAGCAGCA
1 TTTTTGCATAAACGCCGCAAAAGGTTAAAACAATAGCAGCA
* * * *
56441825 TTTTTGCATAAACGTCGCAAAAGGTTAAACCAATGGCGGCA
1 TTTTTGCATAAACGCCGCAAAAGGTTAAAACAATAGCAGCA
* * * ** * *
56441866 TTTTTGCATAAACACCACAAAAGGCTAAAATGATAGCGGTA
1 TTTTTGCATAAACGCCGCAAAAGGTTAAAACAATAGCAGCA
*
56441907 TTTTTCCCATAAACGC
1 TTTTT-GCATAAACGC
56441923 TATTAAAAGT
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 21 0.27
41 50 0.63
42 8 0.10
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (41 bp):
TTTTTGCATAAACGCCGCAAAAGGTTAAAACAATAGCAGCA
Found at i:56450144 original size:12 final size:12
Alignment explanation
Indices: 56450127--56450153 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
56450117 AACCAGTTTT
56450127 AAACTAGTATTA
1 AAACTAGTATTA
56450139 AAACTAGTATTA
1 AAACTAGTATTA
56450151 AAA
1 AAA
56450154 TCGAAAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (12 bp):
AAACTAGTATTA
Found at i:56456806 original size:5 final size:5
Alignment explanation
Indices: 56456789--56456825 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
56456779 AAAAATGGTA
56456789 GGCCC GAGCCC GGCCC GGCCC GGCCC GGCCC GGCCC G
1 GGCCC G-GCCC GGCCC GGCCC GGCCC GGCCC GGCCC G
56456826 ATCATATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.03, C:0.57, G:0.41, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:56456884 original size:24 final size:25
Alignment explanation
Indices: 56456857--56456912 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
56456847 CTTTTTTTAT
*
56456857 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
56456881 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
56456906 -AAATAAA
1 TAAATAAA
56456913 TAATAAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:56456898 original size:25 final size:23
Alignment explanation
Indices: 56456869--56456933 Score: 75
Period size: 19 Copynumber: 2.9 Consensus size: 23
56456859 AATAAAAAAC
*
56456869 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
56456894 TTTAAAACATAAAAATAAATA-A
1 TTTAAAACATAAAAATAAATACA
56456916 --TAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAATAAATA
56456934 AATAATGGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 7 0.18
22 1 0.03
23 5 0.13
24 4 0.10
25 11 0.28
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:56457806 original size:43 final size:42
Alignment explanation
Indices: 56457705--56457818 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
56457695 GTTTATGTAA
* * * * * * *
56457705 AAAATGCCGCTAAAGAACATGACTTTTAGCGGTGTTTTTGAG
1 AAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTCAC
* *
56457747 AAAGCACCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTCAC
1 AAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTCAC
56457789 ACAAACGCCGCTAAAGAACGTGACCTTTAG
1 A-AAACGCCGCTAAAGAACGTGACCTTTAG
56457819 TAGCATTTGT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 34 0.57
43 26 0.43
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTCAC
Found at i:56458747 original size:13 final size:14
Alignment explanation
Indices: 56458721--56458749 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
56458711 ACTAATGACA
56458721 AATTAAACCATTAT
1 AATTAAACCATTAT
56458735 AATTAAA-CATTAT
1 AATTAAACCATTAT
56458748 AA
1 AA
56458750 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:56463808 original size:5 final size:5
Alignment explanation
Indices: 56463800--56463827 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
56463790 TTATGTAAGT
56463800 TATGA TATGA TATGA TATGA TATGA TAT
1 TATGA TATGA TATGA TATGA TATGA TAT
56463828 CTATTTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (5 bp):
TATGA
Found at i:56463853 original size:9 final size:9
Alignment explanation
Indices: 56463839--56463978 Score: 108
Period size: 9 Copynumber: 15.6 Consensus size: 9
56463829 TATTTATGTA
56463839 TTATGTAAG
1 TTATGTAAG
56463848 TTATGTAAG
1 TTATGTAAG
* *
56463857 TTATTTGAG
1 TTATGTAAG
56463866 TTATGTAAG
1 TTATGTAAG
*
56463875 TTATGTGAG
1 TTATGTAAG
* *
56463884 GTATGATATG
1 TTATG-TAAG
*
56463894 ATATATATAAG
1 -T-TATGTAAG
56463905 TTAT-TAAG
1 TTATGTAAG
56463913 TTATGTAAG
1 TTATGTAAG
* *
56463922 TTGTGTGAG
1 TTATGTAAG
56463931 TTATGTAAG
1 TTATGTAAG
*
56463940 TTATGATATG
1 TTATG-TAAG
* * *
56463950 ATATAT-AT
1 TTATGTAAG
56463958 TTATGT-A-
1 TTATGTAAG
56463965 TTATGTAAG
1 TTATGTAAG
56463974 TTATG
1 TTATG
56463979 AAATTTAAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
7 6 0.06
8 14 0.14
9 67 0.66
10 9 0.09
11 3 0.03
12 3 0.03
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:56463891 original size:65 final size:61
Alignment explanation
Indices: 56463840--56463978 Score: 174
Period size: 65 Copynumber: 2.2 Consensus size: 61
56463830 ATTTATGTAT
* * *
56463840 TATGTAAGTTATGTAAGTTATTTGAGTTATGTAAGTTATGTGAGGTATGATATGATATATAT-AA
1 TATGTAAGTTATGTAAGTTATGTGAGTTATGTAAGTTA--TGA--TATGATAT-ATATTTATGTA
56463904 GT
61 -T
*
56463906 TAT-TAAGTTATGTAAGTTGTGTGAGTTATGTAAGTTATGATATGATATATATTTATGTAT
1 TATGTAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATTTATGTAT
56463966 TATGTAAGTTATG
1 TATGTAAGTTATG
56463979 AAATTTAAAC
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
60 11 0.16
61 18 0.27
63 3 0.04
65 32 0.48
66 3 0.04
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (61 bp):
TATGTAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATTTATGTAT
Found at i:56463933 original size:56 final size:57
Alignment explanation
Indices: 56463844--56463978 Score: 174
Period size: 56 Copynumber: 2.5 Consensus size: 57
56463834 ATGTATTATG
* * *
56463844 TAAGTTATGTAAGTTATTTGAGTTATGTAAGTTATGTGAGGTATGATATGATATATA
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGGTATGATATGATATATA
* * *
56463901 TAAGTTAT-TAAGTTATGTAAGTTGTGTGAGTTATGTAAGTTATGATATGATATATA
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGGTATGATATGATATATA
56463957 T---TTATGT-A-TTATGTAAGTTATG
1 TAAGTTATGTAAGTTATGTAAGTTATG
56463979 AAATTTAAAC
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
52 13 0.19
53 5 0.07
54 1 0.01
56 43 0.61
57 8 0.11
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (57 bp):
TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGGTATGATATGATATATA
Found at i:56464024 original size:49 final size:49
Alignment explanation
Indices: 56463964--56464066 Score: 170
Period size: 49 Copynumber: 2.1 Consensus size: 49
56463954 ATATTTATGT
* *
56463964 ATTATGTAAGTTATGAAATTTAAACTTTAAACTATACAATTTTAAGGAA
1 ATTATGCAAGTTATGAAATTTAAACTTTAAACTAAACAATTTTAAGGAA
* *
56464013 ATTATGCAAGTTATGAAATTTAAACTTTAAACTAAATACTTTTAAGGAA
1 ATTATGCAAGTTATGAAATTTAAACTTTAAACTAAACAATTTTAAGGAA
56464062 ATTAT
1 ATTAT
56464067 TGGATTAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.39
Consensus pattern (49 bp):
ATTATGCAAGTTATGAAATTTAAACTTTAAACTAAACAATTTTAAGGAA
Found at i:56464165 original size:20 final size:20
Alignment explanation
Indices: 56464141--56464179 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
56464131 TATGTTTTGG
56464141 TTATA-ATATGTTT-TGAAT
1 TTATATATATGTTTATGAAT
*
56464159 TTATATATATTTTTATGAAT
1 TTATATATATGTTTATGAAT
56464179 T
1 T
56464180 AAATTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TTATATATATGTTTATGAAT
Found at i:56465030 original size:54 final size:54
Alignment explanation
Indices: 56464944--56465054 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
56464934 ACGTGACATA
56464944 TTTTGAATTAAACAATACTAATTGATTCTTTTTAAAACTTTTATAAAAGTTGGG
1 TTTTGAATTAAACAATACTAATTGATTCTTTTTAAAACTTTTATAAAAGTTGGG
*
56464998 TTTTGAATTAAACAATACTAATTGATTTTTTTTAAAACTTTTATAAAAGTTGGG
1 TTTTGAATTAAACAATACTAATTGATTCTTTTTAAAACTTTTATAAAAGTTGGG
56465052 TTT
1 TTT
56465055 AAGCAGGTAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (54 bp):
TTTTGAATTAAACAATACTAATTGATTCTTTTTAAAACTTTTATAAAAGTTGGG
Found at i:56468514 original size:165 final size:165
Alignment explanation
Indices: 56468232--56468581 Score: 436
Period size: 165 Copynumber: 2.1 Consensus size: 165
56468222 TATAATAACA
* ** *
56468232 CCACTAATGATTGAAATTTAGCAGCGTTTACCCAATAGTGCCGCTAATGATTTTTGCGCCTTTTT
1 CCACTAATGATTGACATTTAGCAGCGTTTACCCAATAGCACCGCTAATCATTTTTGCGCCTTTTT
* * * *
56468297 GATAAAATGACGTCGTCTAGCTTACTGCCCATATTTATTTGCAGCATTTTCCCAAGAG-TGTCAC
66 GATAAAATGACGTCGTCAAGCTTAATGCCCATATATATTTGCAGCATTTTCCCAAGAGCGGT-AC
*
56468361 TAATGCTCAACATTTAGTGGCATTTTTAC-CATAGTG
130 TAATGCTCAACATTTAGTGGCATTTTTACAC-TAGCG
* * * * *
56468397 CCACTAATGTTTGACATTTAGCGGCGTTTTCCCAGTAGCACCGCTAA-CATTTTTGGTGCCTTTT
1 CCACTAATGATTGACATTTAGCAGCGTTTACCCAATAGCACCGCTAATCATTTTT-GCGCCTTTT
* * ** * * *
56468461 TGCTAAAATGACGTTGTCAAGCTTAATGCCCATATATATTTGTGGCGTTTTCCCAATAGCGGTGC
65 TGATAAAATGACGTCGTCAAGCTTAATGCCCATATATATTTGCAGCATTTTCCCAAGAGCGGTAC
* *
56468526 TAATGCTCGACATTTAGTGGCGTTTTTACACTAGCG
130 TAATGCTCAACATTTAGTGGCATTTTTACACTAGCG
*
56468562 CCACTAATGCTTGACATTTA
1 CCACTAATGATTGACATTTA
56468582 AGGTCACTAA
Statistics
Matches: 158, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
164 6 0.04
165 149 0.94
166 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (165 bp):
CCACTAATGATTGACATTTAGCAGCGTTTACCCAATAGCACCGCTAATCATTTTTGCGCCTTTTT
GATAAAATGACGTCGTCAAGCTTAATGCCCATATATATTTGCAGCATTTTCCCAAGAGCGGTACT
AATGCTCAACATTTAGTGGCATTTTTACACTAGCG
Found at i:56468561 original size:40 final size:40
Alignment explanation
Indices: 56468498--56468581 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
56468488 GCCCATATAT
* ***
56468498 ATTT-GTGGCGTTTTCCCAATAGCGGTGCTAATGCTCGAC
1 ATTTAGTGGCGTTTTCACAATAGCGCCACTAATGCTCGAC
* * *
56468537 ATTTAGTGGCGTTTTTACACTAGCGCCACTAATGCTTGAC
1 ATTTAGTGGCGTTTTCACAATAGCGCCACTAATGCTCGAC
56468577 ATTTA
1 ATTTA
56468582 AGGTCACTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.11
40 33 0.89
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (40 bp):
ATTTAGTGGCGTTTTCACAATAGCGCCACTAATGCTCGAC
Found at i:56468675 original size:40 final size:40
Alignment explanation
Indices: 56468631--56468738 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
56468621 TAAACTTTTT
* * * * *
56468631 GCGGCATTTTTGAAAAAGCACCGCTAATTCTTGATCTTTA
1 GCGGCGTTTTTAAAAAAACACCGCTAATACTCGATCTTTA
*
56468671 GCGGCGTTTTTTAAAAAACACCGCTAATACTCGATCTTTA
1 GCGGCGTTTTTAAAAAAACACCGCTAATACTCGATCTTTA
* *
56468711 GTGGCGTTTTTAAAAAAACGCCGCTAAT
1 GCGGCGTTTTTAAAAAAACACCGCTAAT
56468739 GCCACTAGAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (40 bp):
GCGGCGTTTTTAAAAAAACACCGCTAATACTCGATCTTTA
Found at i:56468930 original size:7 final size:7
Alignment explanation
Indices: 56468914--56468965 Score: 77
Period size: 7 Copynumber: 7.4 Consensus size: 7
56468904 TTACAAAATA
*
56468914 AAACCCT
1 AAACCTT
56468921 AAACCTT
1 AAACCTT
56468928 AAACCTT
1 AAACCTT
56468935 AAACCTT
1 AAACCTT
*
56468942 AAACCAT
1 AAACCTT
*
56468949 AAACCCT
1 AAACCTT
56468956 AAACCTT
1 AAACCTT
56468963 AAA
1 AAA
56468966 TATATATTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (7 bp):
AAACCTT
Found at i:56469272 original size:7 final size:7
Alignment explanation
Indices: 56469208--56469271 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
56469198 ATACTAATCA
56469208 TTAAACC
1 TTAAACC
*
56469215 ATAAACC
1 TTAAACC
*
56469222 ATAAAACC
1 -TTAAACC
*
56469230 CTAAACC
1 TTAAACC
56469237 TTAAACC
1 TTAAACC
56469244 TTAAACC
1 TTAAACC
**
56469251 TTAAATA
1 TTAAACC
56469258 TTAAACC
1 TTAAACC
*
56469265 CTAAACC
1 TTAAACC
56469272 CAAAAATAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 40 0.89
8 5 0.11
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.23
Consensus pattern (7 bp):
TTAAACC
Found at i:56469400 original size:15 final size:14
Alignment explanation
Indices: 56469377--56469448 Score: 63
Period size: 15 Copynumber: 5.0 Consensus size: 14
56469367 CATATGATTT
56469377 TTTTAGGTTTAGGG
1 TTTTAGGTTTAGGG
56469391 TTTTAGGGTTTAGGG
1 TTTTA-GGTTTAGGG
* * * *
56469406 TTTAATGTTTATGT
1 TTTTAGGTTTAGGG
* *
56469420 TTTTAGAATTTAAGG
1 TTTTAG-GTTTAGGG
*
56469435 TTTAAGGTTTAGGG
1 TTTTAGGTTTAGGG
56469449 ATTAGTGGTT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
14 21 0.48
15 23 0.52
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (14 bp):
TTTTAGGTTTAGGG
Found at i:56469402 original size:7 final size:7
Alignment explanation
Indices: 56469378--56469461 Score: 53
Period size: 7 Copynumber: 11.7 Consensus size: 7
56469368 ATATGATTTT
56469378 TTTA-GG
1 TTTAGGG
56469384 TTTAGGG
1 TTTAGGG
56469391 TTTTAGGG
1 -TTTAGGG
56469399 TTTAGGG
1 TTTAGGG
**
56469406 TTTAATG
1 TTTAGGG
**
56469413 TTTATGTT
1 TTTA-GGG
**
56469421 TTTAGAA
1 TTTAGGG
*
56469428 TTTAAGG
1 TTTAGGG
*
56469435 TTTAAGG
1 TTTAGGG
56469442 TTTAGGG
1 TTTAGGG
*
56469449 ATTAGTGG
1 TTTAG-GG
56469457 TTTAG
1 TTTAG
56469462 AGAAAGCTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
6 4 0.06
7 40 0.65
8 18 0.29
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:56469996 original size:41 final size:41
Alignment explanation
Indices: 56469745--56469985 Score: 268
Period size: 41 Copynumber: 5.9 Consensus size: 41
56469735 CTTTTTGCGC
* * * * *
56469745 CGTTTGGACTAAAAACGCCACTATAGATCAACTTTTTA-TGG
1 CGTTTGGACCAAAAACGCCGCTATTGCTC-AGTTTTTAGTGG
* ** * * *
56469786 CATTTGGATTAAAAAAGCCGCTATTGCTAAGTTTTTAGCGG
1 CGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTGG
* * *
56469827 CATTTGTACCAAAAACACCGCTATTGCTCAGTTTTTAGTGG
1 CGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTGG
* * *
56469868 CGTTTTGACCAAAAACGCTGCTACTGCTCAGTTTTTAGTGG
1 CGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTGG
* * *
56469909 CGTTTTGACCACAAACGCCGCTATTGCTCAATTTTTAGTGG
1 CGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTGG
* *
56469950 CGTTTGGACCAAAAACGCAGCTATTGCTGAGTTTTT
1 CGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTT
56469986 TGCAGCGTTT
Statistics
Matches: 168, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
40 7 0.04
41 161 0.96
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (41 bp):
CGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTGG
Found at i:56472646 original size:61 final size:62
Alignment explanation
Indices: 56472503--56472679 Score: 163
Period size: 60 Copynumber: 2.9 Consensus size: 62
56472493 TCAAGCTTTA
* *
56472503 CTGGGCC-TAAGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCAT-AGCCCTATTACA-AAATCAGAGTTAACTGGGCCTTAGCCCATATCAACATCAAT
* * * * *
56472565 CTGGGTCATAGCCC-CTTACAATATTAGAG-TATACTGGGCC-TAGCCCATATCAGCATCAAT
1 CTGGGCCATAGCCCTATTACAAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAACATCAAT
* * * *
56472625 CTGGGCCATAGCCCTATTAC-AAGTC-GAGATATATTGGGCCTT-GCCCATATTAACA
1 CTGGGCCATAGCCCTATTACAAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAACA
56472680 CGTTGAGCCC
Statistics
Matches: 94, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
59 3 0.03
60 55 0.59
61 22 0.23
62 13 0.14
63 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (62 bp):
CTGGGCCATAGCCCTATTACAAAATCAGAGTTAACTGGGCCTTAGCCCATATCAACATCAAT
Found at i:56475510 original size:59 final size:59
Alignment explanation
Indices: 56475418--56475535 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 59
56475408 TTATTATTTC
*
56475418 TATTTGCATTCGACAACACCAAGATTTTATATATTTCAACGCGGCTCACACAAATATAT
1 TATTTGCATTCGACAACACCAAGATTTTATATATTCCAACGCGGCTCACACAAATATAT
* * *
56475477 TATTTGCGTTCGGCAACACCAAGATTTTATATATTCCAACTCGGCTCACACAAATATAT
1 TATTTGCATTCGACAACACCAAGATTTTATATATTCCAACGCGGCTCACACAAATATAT
56475536 AAATTATATT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (59 bp):
TATTTGCATTCGACAACACCAAGATTTTATATATTCCAACGCGGCTCACACAAATATAT
Found at i:56478884 original size:203 final size:201
Alignment explanation
Indices: 56478640--56479043 Score: 503
Period size: 203 Copynumber: 2.0 Consensus size: 201
56478630 ACCATGAATT
* * * *
56478640 ATATATGTACAAATATATATAAAAACACTTGAACAAAATATTAC-ATAAAATATTAAAATAGTAT
1 ATATATGTACAAATATATAAAAAAACACTTAAACAAAATATT-CTACAAAATATTAAAATAATAT
* *** * * *
56478704 GATATGAAAAAGAACTTT-AAAATAATGAT-TTTATAAAAACAAAGTAAAGTTATTAAAAATAGC
65 GATATAAAAAAGAA-TTTCAAAATAATGATACAAATAAAAACAAAGCAAAATTATT-AAAATAAC
* * * *
56478767 TCAACACAATTTTTAAAAAAATATTAAGTAAATTTTTAAAA-AATAAG-TATTACAAATAGAAAA
128 TCAACAC-ATATAT-AAAAAATATTAAATAAA-TTATAAAATAATAAGTTA-TACAAATAGAAAA
56478830 CTCAATTAAAATA
189 CTCAATTAAAATA
* * * *
56478843 ATATATGTACAAATATATAAAAAAATATTTAAACCAAATATTCTACAAAATGTTAAAATAATATG
1 ATATATGTACAAATATATAAAAAAACACTTAAACAAAATATTCTACAAAATATTAAAATAATATG
*
56478908 ATATAAAAAAGAATTTCAAAATAATTATACAAATAAAAACAAAGCAAAATTATTAAAATAACTCA
66 ATATAAAAAAGAATTTCAAAATAATGATACAAATAAAAACAAAGCAAAATTATTAAAATAACTCA
* * *
56478973 ACACATATATATAAAATATTAAATGAATTATAAAATAGTAAGTTATACAAATAGAAAACTCAATT
131 ACACATATATAAAAAATATTAAATAAATTATAAAATAATAAGTTATACAAATAGAAAACTCAATT
56479038 AAAATA
196 AAAATA
56479044 GAATTAAAAT
Statistics
Matches: 173, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
200 7 0.04
201 45 0.26
202 10 0.06
203 91 0.53
204 20 0.12
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (201 bp):
ATATATGTACAAATATATAAAAAAACACTTAAACAAAATATTCTACAAAATATTAAAATAATATG
ATATAAAAAAGAATTTCAAAATAATGATACAAATAAAAACAAAGCAAAATTATTAAAATAACTCA
ACACATATATAAAAAATATTAAATAAATTATAAAATAATAAGTTATACAAATAGAAAACTCAATT
AAAATA
Found at i:56480215 original size:10 final size:10
Alignment explanation
Indices: 56480185--56480223 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
56480175 CTCTTATTGG
56480185 TTTTTATTTT
1 TTTTTATTTT
**
56480195 AATTTATTTT
1 TTTTTATTTT
56480205 TTTTTATTTT
1 TTTTTATTTT
*
56480215 TTTTAATTT
1 TTTTTATTT
56480224 CTATTTTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTATTTT
Found at i:56480222 original size:24 final size:25
Alignment explanation
Indices: 56480186--56480234 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
56480176 TCTTATTGGT
*
56480186 TTTTATTTTAATTTATTTTTTTTTA
1 TTTTATTTTAATTTATATTTTTTTA
*
56480211 TTTT-TTTTAATTTCTATTTTTTTA
1 TTTTATTTTAATTTATATTTTTTTA
56480235 AGGGGCTCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (25 bp):
TTTTATTTTAATTTATATTTTTTTA
Found at i:56480366 original size:42 final size:42
Alignment explanation
Indices: 56480302--56480382 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
56480292 ACGAGAATAG
*
56480302 AGCAAAGACTTCAAATAGGGCTAATTTTGCCCTATTTTGCTT
1 AGCAAAGACTTCAAATAGGGCTAATTTTGCCCGATTTTGCTT
*
56480344 AGCAAAGACTTCAAATATGGCTAATTTTGCCCGATTTTG
1 AGCAAAGACTTCAAATAGGGCTAATTTTGCCCGATTTTG
56480383 TTGAATCTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (42 bp):
AGCAAAGACTTCAAATAGGGCTAATTTTGCCCGATTTTGCTT
Found at i:56480666 original size:24 final size:24
Alignment explanation
Indices: 56480634--56480681 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
56480624 AGGGAGATAA
56480634 GATCTTCAATCTTCAGTCTGCTTC
1 GATCTTCAATCTTCAGTCTGCTTC
56480658 GATCTTCAATCTTCAGTCTGCTTC
1 GATCTTCAATCTTCAGTCTGCTTC
56480682 CTTGCTACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.12, T:0.42
Consensus pattern (24 bp):
GATCTTCAATCTTCAGTCTGCTTC
Found at i:56480733 original size:43 final size:44
Alignment explanation
Indices: 56480661--56480746 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 44
56480651 CTGCTTCGAT
* * * *
56480661 CTTCAATCTTCAGTCTGCTTCCTTGCTACCTCGGA-AGATAAGA
1 CTTCAATCTTCAATCTACTTCCTTACTACCTCAGAGAGATAAGA
56480704 CTTCAATCTTCAATCTAC-TCTCTTACTACCTCAGAGAGATAAG
1 CTTCAATCTTCAATCTACTTC-CTTACTACCTCAGAGAGATAAG
56480747 GCTGGTGGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.05
43 28 0.76
44 7 0.19
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.33
Consensus pattern (44 bp):
CTTCAATCTTCAATCTACTTCCTTACTACCTCAGAGAGATAAGA
Found at i:56481077 original size:177 final size:176
Alignment explanation
Indices: 56480658--56481147 Score: 601
Period size: 177 Copynumber: 2.8 Consensus size: 176
56480648 AGTCTGCTTC
* * *
56480658 GATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCGGAAGATAAGACTTCAATCTTCAATCTACT
1 GATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAGATAAGACTTCAATCTTCAACCTGCT
* * * *
56480723 CTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTAT-CGATACGTAGAGA
66 CTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATT-TCCGATACATGGAGA
*
56480787 TAAGATTCGCCTCTTTCGATCTACTCCACTACTGCTTAAGGAGACAA
130 TAAGATTCGCATCTTTCGATCTACTCCACTACTGCTTAAGGAGACAA
* **
56480834 GATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAATACCACAATCTTCAACCTGC
1 GATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAG-AAGATAAGACTTCAATCTTCAACCTGC
* * * *
56480899 TCTCTTGTTACCTCAAAGAGATAAGGCTAGTGG-TTAAAATCTGCTTCATTTCCAATACATGGAG
65 TCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTT-AAATCTGCTCCATTTCCGATACATGGAG
* * * *
56480963 ATAAGATTCATCATC-TTCGATCTGCTCCACTACTGCTTAGGGAGATAA
129 ATAAGATTC-GCATCTTTCGATCTACTCCACTACTGCTTAAGGAGACAA
* * ** * * *
56481011 GATCTTCAGTCTTCAGTCTGCTTCCTTTCTACCTCAAGAAGATAAGACTTGTATATTGAGCCTGC
1 GATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTC-AGAAGATAAGACTTCAATCTTCAACCTGC
* * * * * * *
56481076 TC-CACTGCAACTTCAGGGAGATAAGGCTAATGGCTTAAATATGCTCCATTGCCGATACATGGAG
65 TCTC-TTGCTACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTTCCGATACATGGAG
56481140 ATAAGATT
129 ATAAGATT
56481148 TGCCGTCTTT
Statistics
Matches: 267, Mismatches: 40, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
176 40 0.15
177 220 0.82
178 7 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (176 bp):
GATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAGATAAGACTTCAATCTTCAACCTGCT
CTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTTCCGATACATGGAGAT
AAGATTCGCATCTTTCGATCTACTCCACTACTGCTTAAGGAGACAA
Found at i:56490935 original size:27 final size:27
Alignment explanation
Indices: 56490904--56491081 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
56490894 TAAATTGTAC
56490904 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
56490931 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
56490957 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
56490985 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
56491013 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
56491040 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
56491067 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
56491082 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:56491018 original size:82 final size:81
Alignment explanation
Indices: 56490905--56491060 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
56490895 AAATTGTACA
* *
56490905 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
56490969 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
56490986 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
56491051 TGCGAGTTGA
65 TGCGAATTGA
56491061 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:56491072 original size:82 final size:81
Alignment explanation
Indices: 56490901--56491081 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
56490891 GATTAAATTG
* *
56490901 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
56490966 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
56490982 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
56491046 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
56491064 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
56491082 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:56498103 original size:48 final size:48
Alignment explanation
Indices: 56498032--56498129 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
56498022 CACAGGATAA
*
56498032 TTGACTTTCGGGACATTCATTGTGGATTTTGACGCGCATATACACCCT
1 TTGACTTTCGGGACATTCATTGTGGATTCTGACGCGCATATACACCCT
*
56498080 TTGACTTTCGGGACATTCATTGTGGATTCTGATGCGCATATACACCCT
1 TTGACTTTCGGGACATTCATTGTGGATTCTGACGCGCATATACACCCT
56498128 TT
1 TT
56498130 CTCTTTAGCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (48 bp):
TTGACTTTCGGGACATTCATTGTGGATTCTGACGCGCATATACACCCT
Found at i:56502822 original size:203 final size:203
Alignment explanation
Indices: 56502598--56503003 Score: 516
Period size: 203 Copynumber: 2.0 Consensus size: 203
56502588 ACCATGAATT
* *
56502598 ATATATGTACAAATATATATAAAAACACTTGAACAAAATATTACATAAAATATTAAAATAGTATG
1 ATATATGTACAAATATATATAAAAACACTTAAACAAAATATTACATAAAATATTAAAATAATATG
* * *** * * *
56502663 ATATGAA-AAA-GAACTTTAAAATAATGAT-TTTATAAAAACAAAGTAAAGTTATTAAAAATAGC
66 ATAT-AATAAATAAACTTCAAAATAATGATACAAATAAAAACAAAGAAAAATTATT-AAAATAAC
* * * *
56502725 TC-AACACAGTTTTTAAAAAAATATTAAGTGAATTTTAAAATAATAAG-TATTACAAATAGAAAA
129 TCTAACACA-TATAT-AAAAAATACTAAATGAATTTTAAAATAATAAGTTA-TACAAATAGAAAA
56502788 CTCAATTAAAATA
191 CTCAATTAAAATA
* * * * * *
56502801 ATATATGTACAAATATATATAAAAATATTTAAACCAAATATTATATGAAATGTTAAAATAATATG
1 ATATATGTACAAATATATATAAAAACACTTAAACAAAATATTACATAAAATATTAAAATAATATG
* *
56502866 ATATAATAAATAAACTTCAAAATAATTATACAAATAAAAATAAAGAAAAATTATTAAAATAACTC
66 ATATAATAAATAAACTTCAAAATAATGATACAAATAAAAACAAAGAAAAATTATTAAAATAACTC
* *
56502931 TAACACATATATATAAAATACTAAATGAATTTTAAAATAGTAAGTTATACAAATAGAAAACTCAA
131 TAACACATATATAAAAAATACTAAATGAATTTTAAAATAATAAGTTATACAAATAGAAAACTCAA
56502996 TTAAAATA
196 TTAAAATA
56503004 GAATTAAAAT
Statistics
Matches: 174, Mismatches: 24, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
202 2 0.01
203 118 0.68
204 29 0.17
205 25 0.14
ACGTcount: A:0.56, C:0.07, G:0.06, T:0.31
Consensus pattern (203 bp):
ATATATGTACAAATATATATAAAAACACTTAAACAAAATATTACATAAAATATTAAAATAATATG
ATATAATAAATAAACTTCAAAATAATGATACAAATAAAAACAAAGAAAAATTATTAAAATAACTC
TAACACATATATAAAAAATACTAAATGAATTTTAAAATAATAAGTTATACAAATAGAAAACTCAA
TTAAAATA
Found at i:56517173 original size:22 final size:22
Alignment explanation
Indices: 56517145--56517191 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
56517135 GGGTTTTGAA
56517145 GTTTAATGATAGAAAAAGAATG
1 GTTTAATGATAGAAAAAGAATG
*
56517167 GTTTAATGATAGAAAAGGAATG
1 GTTTAATGATAGAAAAAGAATG
56517189 GTT
1 GTT
56517192 GTTGTTAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.30
Consensus pattern (22 bp):
GTTTAATGATAGAAAAAGAATG
Found at i:56517830 original size:26 final size:26
Alignment explanation
Indices: 56517722--56517829 Score: 117
Period size: 26 Copynumber: 4.2 Consensus size: 26
56517712 GTCATTAGGG
* * *
56517722 TTACTATTATTTTAGCTCAGAGGAGT
1 TTACTATTATTTCAGCTCGGAGGAGC
* *
56517748 TTACTTTTATTTCAGCTCGGAGGAGT
1 TTACTATTATTTCAGCTCGGAGGAGC
* * *
56517774 TTAGTGTTATTTCAACTCGGAGGAGC
1 TTACTATTATTTCAGCTCGGAGGAGC
* * *
56517800 TTACCATTATTTTAGCTCGGATGAGC
1 TTACTATTATTTCAGCTCGGAGGAGC
56517826 TTAC
1 TTAC
56517830 CGTTTGCAAC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (26 bp):
TTACTATTATTTCAGCTCGGAGGAGC
Found at i:56525390 original size:26 final size:27
Alignment explanation
Indices: 56525354--56525430 Score: 104
Period size: 26 Copynumber: 2.9 Consensus size: 27
56525344 AGGGTTACCG
*
56525354 TTATTTTAGCTCGGAGAAGCTTATC-A
1 TTATTTTAGCTCGGAGGAGCTTATCTA
*
56525380 TTATTTTAGCTCAGAGGAGCTTA-CTA
1 TTATTTTAGCTCGGAGGAGCTTATCTA
* *
56525406 TTATTTTAGCTTGAAGGAGCTTATC
1 TTATTTTAGCTCGGAGGAGCTTATC
56525431 GTTTACAGCT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
25 1 0.02
26 42 0.95
27 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.40
Consensus pattern (27 bp):
TTATTTTAGCTCGGAGGAGCTTATCTA
Found at i:56526721 original size:47 final size:44
Alignment explanation
Indices: 56526655--56526774 Score: 134
Period size: 45 Copynumber: 2.6 Consensus size: 44
56526645 TTTGTGTTCG
* *
56526655 AGTGTAAGACATGTCTGGGACATGCATCAACTA-TATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAACTACGA-GAT--GAGCC
* * * *
56526701 AGTGTAAGACGATGTCTGGGACATGTATCCACTACGAGATGTGTC
1 AGTGTAAGAC-ATGTCTGGGACATGCATCAACTACGAGATGAGCC
56526746 AGTGTAAGACCATGTCTGGGACATGCATC
1 AGTGTAAGA-CATGTCTGGGACATGCATC
56526775 GGTACGTATA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
45 29 0.45
46 11 0.17
47 23 0.36
48 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACTACGAGATGAGCC
Found at i:56535224 original size:20 final size:21
Alignment explanation
Indices: 56535185--56535224 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
56535175 GTTATAACGA
* *
56535185 CCACATGGGTGTATTGCCCTT
1 CCACACGGGTGTAGTGCCCTT
56535206 CCACACGGGTGT-GTGCCCT
1 CCACACGGGTGTAGTGCCCT
56535225 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.33, G:0.28, T:0.28
Consensus pattern (21 bp):
CCACACGGGTGTAGTGCCCTT
Found at i:56541345 original size:47 final size:46
Alignment explanation
Indices: 56541280--56541492 Score: 195
Period size: 47 Copynumber: 4.5 Consensus size: 46
56541270 TTTTTGTGCT
56541280 AGTGTAAGA-CATGTCTGGGACATGCATCAGC-CATATTATGAGAT-CC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCACATA-TA-GAGATGCC
* * * *
56541326 AGTGTAAGACCATGTCTGGGACATGTATCG-AC-TACGAGATATGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGCACATA-TAGAGATGCC
* * *
56541371 AGTGTAAGACCATGTCTGGGACATGCATCGACACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCG-CACATATAGAGATGCC
* * *
56541418 AGTGTAAGACCATGTCTGAGACATGGCATCGGCACGGATATGTGAGA-GCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-GCAC--ATAT-AGAGATGCC
*
56541468 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
56541493 GCGTTGGCCT
Statistics
Matches: 139, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
44 4 0.03
45 33 0.24
46 11 0.08
47 50 0.36
48 10 0.07
49 2 0.01
50 26 0.19
51 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGCACATATAGAGATGCC
Found at i:56543669 original size:46 final size:47
Alignment explanation
Indices: 56543521--56543735 Score: 201
Period size: 46 Copynumber: 4.6 Consensus size: 47
56543511 CTTGTGTGCT
* * * **
56543521 AGTGTAAGATATGTTTGGGACATGCATCGGCCACATTAT-TAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCC
* ** * *
56543567 AGTGTAAGACCATGTCTGGGACATGGAATCGGAATCGAGATG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGTAGAGCC
* *
56543615 AGTGTAAGACATGTCTGCGACATGCATTGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCC
* * *
56543661 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGATGTAGAGCC
56543705 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
56543736 ACACGGATAT
Statistics
Matches: 139, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 63 0.45
47 26 0.19
48 23 0.17
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCC
Found at i:56543826 original size:49 final size:50
Alignment explanation
Indices: 56543700--56543833 Score: 150
Period size: 49 Copynumber: 2.7 Consensus size: 50
56543690 GCTACGAGAT
56543700 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATATGTGA
1 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATATGTGA
* * * * * *
56543750 GAG-CTAGTGTTAGACCATGTCTAGGACATGGCACTGGCCTCGG-T-T-TCGA
1 GTGTC-AGTGTAAGACCATGTCTGGGACATGGCA-TCGACACGGATATGT-GA
*
56543799 TTGTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATC
56543834 AGCATTATAC
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
48 2 0.03
49 31 0.45
50 30 0.43
51 6 0.09
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (50 bp):
GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATATGTGA
Found at i:56546929 original size:27 final size:26
Alignment explanation
Indices: 56546857--56546929 Score: 76
Period size: 27 Copynumber: 2.8 Consensus size: 26
56546847 CAAACATGAA
* *
56546857 TAGTCTCCTAGGATAGTAAACACTGG
1 TAGTCTACTAAGATAGTAAACACTGG
* *
56546883 TAGTCTACTAAGACAATAAACA-TAGGG
1 TAGTCTACTAAGATAGTAAACACT--GG
*
56546910 TAGTCTGCTAAGATAGTAAA
1 TAGTCTACTAAGATAGTAAA
56546930 ACATGGGAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.03
26 18 0.47
27 19 0.50
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (26 bp):
TAGTCTACTAAGATAGTAAACACTGG
Found at i:56549814 original size:18 final size:18
Alignment explanation
Indices: 56549791--56549833 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
56549781 AGAGGAGAGA
56549791 ATGATTAATGAG-TGAGGG
1 ATGATTAA-GAGATGAGGG
* *
56549809 ATGATTGAGGGATGAGGG
1 ATGATTAAGAGATGAGGG
56549827 ATGATTA
1 ATGATTA
56549834 GAAAAGTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.33, C:0.00, G:0.40, T:0.28
Consensus pattern (18 bp):
ATGATTAAGAGATGAGGG
Found at i:56552517 original size:188 final size:188
Alignment explanation
Indices: 56552200--56552577 Score: 756
Period size: 188 Copynumber: 2.0 Consensus size: 188
56552190 AATCATCTCT
56552200 ATTTTTTTTTTGCATATTTCCAGTAAGTTTGTTGTTGATTGTGCATGAACTTGCACATATCCATC
1 ATTTTTTTTTTGCATATTTCCAGTAAGTTTGTTGTTGATTGTGCATGAACTTGCACATATCCATC
56552265 AACATTGACAACTCTGATTTCCTTGAAGTACTTGCAAAAGTTGGCATGGAGTTGTGTATTCAAGT
66 AACATTGACAACTCTGATTTCCTTGAAGTACTTGCAAAAGTTGGCATGGAGTTGTGTATTCAAGT
56552330 TCAGCACTTAGCTTGACTGGTTCTTCTTCTGGCTCAACCCTTGGTTCAGGGTTTTCAG
131 TCAGCACTTAGCTTGACTGGTTCTTCTTCTGGCTCAACCCTTGGTTCAGGGTTTTCAG
56552388 ATTTTTTTTTTGCATATTTCCAGTAAGTTTGTTGTTGATTGTGCATGAACTTGCACATATCCATC
1 ATTTTTTTTTTGCATATTTCCAGTAAGTTTGTTGTTGATTGTGCATGAACTTGCACATATCCATC
56552453 AACATTGACAACTCTGATTTCCTTGAAGTACTTGCAAAAGTTGGCATGGAGTTGTGTATTCAAGT
66 AACATTGACAACTCTGATTTCCTTGAAGTACTTGCAAAAGTTGGCATGGAGTTGTGTATTCAAGT
56552518 TCAGCACTTAGCTTGACTGGTTCTTCTTCTGGCTCAACCCTTGGTTCAGGGTTTTCAG
131 TCAGCACTTAGCTTGACTGGTTCTTCTTCTGGCTCAACCCTTGGTTCAGGGTTTTCAG
56552576 AT
1 AT
56552578 CCTTCAACTG
Statistics
Matches: 190, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
188 190 1.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.40
Consensus pattern (188 bp):
ATTTTTTTTTTGCATATTTCCAGTAAGTTTGTTGTTGATTGTGCATGAACTTGCACATATCCATC
AACATTGACAACTCTGATTTCCTTGAAGTACTTGCAAAAGTTGGCATGGAGTTGTGTATTCAAGT
TCAGCACTTAGCTTGACTGGTTCTTCTTCTGGCTCAACCCTTGGTTCAGGGTTTTCAG
Found at i:56562325 original size:18 final size:18
Alignment explanation
Indices: 56562300--56562351 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
56562290 ACATGCATTT
*
56562300 CATACATTCCATGCAACC
1 CATACATTCCATGCAAAC
* *
56562318 CATGCATTTCAAT-CAAAC
1 CATACA-TTCCATGCAAAC
56562336 CATACATTCCATGCAA
1 CATACATTCCATGCAA
56562352 TGTGCTGCGT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 5 0.19
18 17 0.63
19 5 0.19
ACGTcount: A:0.37, C:0.33, G:0.06, T:0.25
Consensus pattern (18 bp):
CATACATTCCATGCAAAC
Found at i:56562338 original size:27 final size:27
Alignment explanation
Indices: 56562281--56562338 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
56562271 TCCATGCGTT
**
56562281 CCATGCAAAACATGCATTTCATACATT
1 CCATGCAAAACATGCATTTCATACAAA
**
56562308 CCATGCAACCCATGCATTTCA-ATCAAA
1 CCATGCAAAACATGCATTTCATA-CAAA
56562335 CCAT
1 CCAT
56562339 ACATTCCATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.31, G:0.07, T:0.26
Consensus pattern (27 bp):
CCATGCAAAACATGCATTTCATACAAA
Found at i:56567756 original size:14 final size:15
Alignment explanation
Indices: 56567739--56567767 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
56567729 GCACGAAAAT
56567739 TTCACACA-AATAAA
1 TTCACACATAATAAA
56567753 TTCACACATAATAAA
1 TTCACACATAATAAA
56567768 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:56569971 original size:28 final size:29
Alignment explanation
Indices: 56569907--56569977 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 29
56569897 CCAAAACTTT
* * * *
56569907 CATTTATTCACAATTTAATCCTTTAATTTA
1 CATTT-TTCTCAAATTAATCCTCTAATTGA
*
56569937 CACTTTTCTCAAATTAATCC-CTAATTGA
1 CATTTTTCTCAAATTAATCCTCTAATTGA
*
56569965 CATTTTTGTCAAA
1 CATTTTTCTCAAA
56569978 AATCGCTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
28 17 0.50
29 13 0.38
30 4 0.12
ACGTcount: A:0.32, C:0.20, G:0.03, T:0.45
Consensus pattern (29 bp):
CATTTTTCTCAAATTAATCCTCTAATTGA
Found at i:56574509 original size:13 final size:15
Alignment explanation
Indices: 56574491--56574522 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
56574481 TTTATTCATC
56574491 AATCTCTT-CCTC-G
1 AATCTCTTGCCTCTG
56574504 AATCTCTTGCCTCTG
1 AATCTCTTGCCTCTG
56574519 AATC
1 AATC
56574523 AGCTTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.19, C:0.34, G:0.09, T:0.38
Consensus pattern (15 bp):
AATCTCTTGCCTCTG
Found at i:56577504 original size:28 final size:29
Alignment explanation
Indices: 56577449--56577505 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
56577439 ATTTCACGAT
*
56577449 TTAACCCCTCAATTTACACTTTTCTCAAA
1 TTAACCCCTCAATTGACACTTTTCTCAAA
* * *
56577478 TTAATCCCT-AATTGACATTTTTGTCAAA
1 TTAACCCCTCAATTGACACTTTTCTCAAA
56577506 AACCTTTACA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.40
Consensus pattern (29 bp):
TTAACCCCTCAATTGACACTTTTCTCAAA
Found at i:56587367 original size:23 final size:22
Alignment explanation
Indices: 56587341--56587383 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
56587331 TCCTAAACAT
*
56587341 TATCACTAAATAGTCTTAAATAC
1 TATCACTAAATAAT-TTAAATAC
56587364 TATCACTAAATAATTTAAAT
1 TATCACTAAATAATTTAAAT
56587384 TTTAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (22 bp):
TATCACTAAATAATTTAAATAC
Found at i:56588135 original size:29 final size:29
Alignment explanation
Indices: 56588067--56588136 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
56588057 ATTGGAAGCA
* *
56588067 TTTTCGTAAAATTGGCTTAATCCTGTAAT
1 TTTTCTTAAAAATGGCTTAATCCTGTAAT
*
56588096 TTTT-TAAAAAATGGCTTAAT-CTGATAAT
1 TTTTCTTAAAAATGGCTTAATCCTG-TAAT
56588124 TTTTCTTAAAAAT
1 TTTTCTTAAAAAT
56588137 CGGCATTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
27 3 0.09
28 21 0.60
29 11 0.31
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (29 bp):
TTTTCTTAAAAATGGCTTAATCCTGTAAT
Found at i:56588572 original size:41 final size:41
Alignment explanation
Indices: 56588510--56588597 Score: 167
Period size: 41 Copynumber: 2.1 Consensus size: 41
56588500 CCTTTTTTAA
*
56588510 ATTTGAAATGGTTGTGGTATAATTTTGAATTTCATATTTCT
1 ATTTTAAATGGTTGTGGTATAATTTTGAATTTCATATTTCT
56588551 ATTTTAAATGGTTGTGGTATAATTTTGAATTTCATATTTCT
1 ATTTTAAATGGTTGTGGTATAATTTTGAATTTCATATTTCT
56588592 ATTTTA
1 ATTTTA
56588598 TGGAAATTAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.27, C:0.05, G:0.15, T:0.53
Consensus pattern (41 bp):
ATTTTAAATGGTTGTGGTATAATTTTGAATTTCATATTTCT
Found at i:56588997 original size:38 final size:38
Alignment explanation
Indices: 56588955--56589031 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
56588945 TAAAAAAACT
*
56588955 AAGAAAATAATCCATTTATTTTAATTTGTTAAAATTTA
1 AAGAAAATAATCCATTTACTTTAATTTGTTAAAATTTA
56588993 AAGAAAATAATCCATTTACTTTAATTTGTTAAAATTTA
1 AAGAAAATAATCCATTTACTTTAATTTGTTAAAATTTA
56589031 A
1 A
56589032 TCCTCATACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.43
Consensus pattern (38 bp):
AAGAAAATAATCCATTTACTTTAATTTGTTAAAATTTA
Found at i:56589695 original size:43 final size:42
Alignment explanation
Indices: 56589634--56589715 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 42
56589624 ATGGATTCTG
56589634 TCTCAATTATGTATGCATAATTCTTGGTTTGATAGTTTCTTGT
1 TCTCAATTATGTATGCATAATTCTTGGTTTGATA-TTTCTTGT
56589677 TCTCAATTATGTATGCATAATTCTTGGTTTGATATTTCT
1 TCTCAATTATGTATGCATAATTCTTGGTTTGATATTTCT
56589716 AAATTATTGA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
42 5 0.13
43 34 0.87
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51
Consensus pattern (42 bp):
TCTCAATTATGTATGCATAATTCTTGGTTTGATATTTCTTGT
Found at i:56590453 original size:43 final size:43
Alignment explanation
Indices: 56590397--56590556 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 43
56590387 GTTTATCCAA
*
56590397 AAAAACGCCGCTAAAAGTCATGACTTTTAGCGGCGTTTGTTGG
1 AAAAGCGCCGCTAAAAGTCATGACTTTTAGCGGCGTTTGTTGG
* * * *
56590440 GAAAGCGTCGCTAAAAGTCATGATTTTTAGCGACGTTTG-T--
1 AAAAGCGCCGCTAAAAGTCATGACTTTTAGCGGCGTTTGTTGG
* * * * *
56590480 AAAAACACCGCTAAAAAT-A-GTACTTTTAGCGGCTTTTGTAGG
1 AAAAGCGCCGCTAAAAGTCATG-ACTTTTAGCGGCGTTTGTTGG
* *
56590522 AAAAGCGCCGCTAAAGGTTATGACTTTTAGCGGCG
1 AAAAGCGCCGCTAAAAGTCATGACTTTTAGCGGCG
56590557 CTTTTCCTAC
Statistics
Matches: 92, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
38 1 0.01
39 15 0.16
40 13 0.14
42 15 0.16
43 47 0.51
44 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCATGACTTTTAGCGGCGTTTGTTGG
Found at i:56590527 original size:82 final size:83
Alignment explanation
Indices: 56590397--56590553 Score: 210
Period size: 82 Copynumber: 1.9 Consensus size: 83
56590387 GTTTATCCAA
* * * * *
56590397 AAAAACGCCGCTAAAAGTCATGACTTTTAGCGGCGTTTGTTGGGAAAGCGTCGCTAAAAGTCATG
1 AAAAACACCGCTAAAAATCATGACTTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATG
*
56590462 ATTTTTAGCGACGTTTGT
66 ACTTTTAGCGACGTTTGT
* * *
56590480 AAAAACACCGCTAAAAAT-A-GTACTTTTAGCGGCTTTTGTAGGAAAAGCGCCGCTAAAGGTTAT
1 AAAAACACCGCTAAAAATCATG-ACTTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCAT
56590543 GACTTTTAGCG
65 GACTTTTAGCG
56590554 GCGCTTTTCC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 1 0.02
82 47 0.73
83 16 0.25
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (83 bp):
AAAAACACCGCTAAAAATCATGACTTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATG
ACTTTTAGCGACGTTTGT
Found at i:56590632 original size:42 final size:41
Alignment explanation
Indices: 56590541--56590634 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 41
56590531 GCTAAAGGTT
* * *
56590541 ATGACTTTTAGCGGCGCTTTTCCTACAAACGCCGCTATAAA
1 ATGACCTTTAGCGACGCTTTTCCTACAAACGCCGCTAAAAA
* *
56590582 ATAAACCTTTAGTGACGCTTTT-CTCACAAACGCCGCTAAAAA
1 AT-GACCTTTAGCGACGCTTTTCCT-ACAAACGCCGCTAAAAA
56590624 CATGACCTTTA
1 -ATGACCTTTA
56590635 AAAAAATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 4 0.09
42 38 0.86
43 2 0.05
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (41 bp):
ATGACCTTTAGCGACGCTTTTCCTACAAACGCCGCTAAAAA
Found at i:56590910 original size:111 final size:111
Alignment explanation
Indices: 56590794--56591018 Score: 450
Period size: 111 Copynumber: 2.0 Consensus size: 111
56590784 AAAACTAAAT
56590794 ATAAAAATTAATGAATTTAAATTAACGAAACAAGAACATTGATCAAGTTAAAAAAAAAAAAAGAC
1 ATAAAAATTAATGAATTTAAATTAACGAAACAAGAACATTGATCAAGTTAAAAAAAAAAAAAGAC
56590859 AATGAAGAAATTAAGAGTCAAACATTAGCTCCAATAAATGTTCAAA
66 AATGAAGAAATTAAGAGTCAAACATTAGCTCCAATAAATGTTCAAA
56590905 ATAAAAATTAATGAATTTAAATTAACGAAACAAGAACATTGATCAAGTTAAAAAAAAAAAAAGAC
1 ATAAAAATTAATGAATTTAAATTAACGAAACAAGAACATTGATCAAGTTAAAAAAAAAAAAAGAC
56590970 AATGAAGAAATTAAGAGTCAAACATTAGCTCCAATAAATGTTCAAA
66 AATGAAGAAATTAAGAGTCAAACATTAGCTCCAATAAATGTTCAAA
56591016 ATA
1 ATA
56591019 TAAGACAACT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 114 1.00
ACGTcount: A:0.57, C:0.10, G:0.11, T:0.23
Consensus pattern (111 bp):
ATAAAAATTAATGAATTTAAATTAACGAAACAAGAACATTGATCAAGTTAAAAAAAAAAAAAGAC
AATGAAGAAATTAAGAGTCAAACATTAGCTCCAATAAATGTTCAAA
Found at i:56591414 original size:94 final size:94
Alignment explanation
Indices: 56591271--56591458 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
56591261 AATTTCTTAC
56591271 AAGAAAAGAAATACGCAATGGAACTAAAATCAGAAAGCAATGAGCCAAGGACATTAGCATTTTCC
1 AAGAAAAGAAATACGCAATGGAACTAAAATCAGAAAGCAATGAGCCAAGGACATTAGCATTTTCC
56591336 TACCTTCCCTGAAACCTGTCTTGAACCTG
66 TACCTTCCCTGAAACCTGTCTTGAACCTG
**
56591365 AAGAAAAGAAATTTGCAATGGAACTAAAATCAGAAAGCAATGAGCCAAGGACATTAGCATTTTCC
1 AAGAAAAGAAATACGCAATGGAACTAAAATCAGAAAGCAATGAGCCAAGGACATTAGCATTTTCC
56591430 TACCTTCCCTGAAACCTGTCTTGAACCTG
66 TACCTTCCCTGAAACCTGTCTTGAACCTG
56591459 CGAGGAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (94 bp):
AAGAAAAGAAATACGCAATGGAACTAAAATCAGAAAGCAATGAGCCAAGGACATTAGCATTTTCC
TACCTTCCCTGAAACCTGTCTTGAACCTG
Found at i:56591666 original size:23 final size:23
Alignment explanation
Indices: 56591562--56591650 Score: 142
Period size: 23 Copynumber: 3.9 Consensus size: 23
56591552 ATAAGTACTT
*
56591562 AAACACTTCAATTTGCAACATTT
1 AAACACTTCAATTTGCAACATTC
* *
56591585 AAGCACTTCAATTTGCAGCATTC
1 AAACACTTCAATTTGCAACATTC
*
56591608 AAACACTTCAATTTGCAGCATTC
1 AAACACTTCAATTTGCAACATTC
56591631 AAACACTTCAATTTGCAACA
1 AAACACTTCAATTTGCAACA
56591651 CTTTAACATC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.30
Consensus pattern (23 bp):
AAACACTTCAATTTGCAACATTC
Found at i:56596209 original size:10 final size:10
Alignment explanation
Indices: 56596194--56596221 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
56596184 GGCTTAGGTT
56596194 AAGGGTATGG
1 AAGGGTATGG
56596204 AAGGGTATGG
1 AAGGGTATGG
56596214 AAGGGTAT
1 AAGGGTAT
56596222 ACATAGTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.46, T:0.21
Consensus pattern (10 bp):
AAGGGTATGG
Found at i:56596652 original size:30 final size:30
Alignment explanation
Indices: 56596616--56596676 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
56596606 ACGTGGAAGT
*
56596616 AAGGGTCGAGTGATGCATAAGCTTCTTGGG
1 AAGGGTCGAGTGATGCATAAGCTTATTGGG
56596646 AAGGGTCGAGTGATGCATAAGCTTATTGGG
1 AAGGGTCGAGTGATGCATAAGCTTATTGGG
56596676 A
1 A
56596677 CATCATAGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.11, G:0.36, T:0.26
Consensus pattern (30 bp):
AAGGGTCGAGTGATGCATAAGCTTATTGGG
Found at i:56598868 original size:28 final size:28
Alignment explanation
Indices: 56598828--56598885 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
56598818 GGATTTGGGG
56598828 TTTCTTGAGAGGAATTAGTTGGTATAAA
1 TTTCTTGAGAGGAATTAGTTGGTATAAA
56598856 TTTCTTGAGAGGAATTAGTTGGTATAAA
1 TTTCTTGAGAGGAATTAGTTGGTATAAA
56598884 TT
1 TT
56598886 ATGTGTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.24, T:0.41
Consensus pattern (28 bp):
TTTCTTGAGAGGAATTAGTTGGTATAAA
Found at i:56599197 original size:17 final size:18
Alignment explanation
Indices: 56599177--56599210 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
56599167 TGTTTTTTCT
*
56599177 TTATTT-TTTTCTTTTAG
1 TTATTTATTTACTTTTAG
56599194 TTATTTATTTACTTTTA
1 TTATTTATTTACTTTTA
56599211 TCTCTCAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.74
Consensus pattern (18 bp):
TTATTTATTTACTTTTAG
Found at i:56605151 original size:27 final size:26
Alignment explanation
Indices: 56605093--56605159 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
56605083 TGAAAATTTG
*
56605093 AAAAAATATAAAAATTATTAAATCTT
1 AAAAAATATAAAAATTATTAAATATT
*
56605119 AAAAAATATGAAAATTGATATAAA-ATT
1 AAAAAATATAAAAATT-AT-TAAATATT
*
56605146 ATAAAATATAAAAA
1 AAAAAATATAAAAA
56605160 ATCTAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 15 0.43
27 16 0.46
28 4 0.11
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (26 bp):
AAAAAATATAAAAATTATTAAATATT
Found at i:56605171 original size:37 final size:38
Alignment explanation
Indices: 56605098--56605171 Score: 89
Period size: 37 Copynumber: 2.0 Consensus size: 38
56605088 ATTTGAAAAA
* * *
56605098 ATATAAAAATTATTAAATCTTAAAAAATATGAAAATTG
1 ATATAAAAATTATAAAATCATAAAAAATATAAAAATTG
*
56605136 ATAT-AAAATTATAAAAT-ATAAAAAATCTAATAAATT
1 ATATAAAAATTATAAAATCATAAAAAATATAA-AAATT
56605172 ATTAATAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
36 10 0.32
37 17 0.55
38 4 0.13
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (38 bp):
ATATAAAAATTATAAAATCATAAAAAATATAAAAATTG
Found at i:56605200 original size:21 final size:24
Alignment explanation
Indices: 56605167--56605214 Score: 66
Period size: 21 Copynumber: 2.1 Consensus size: 24
56605157 AAAATCTAAT
56605167 AAATTATTAATAAAACATA-TTTA
1 AAATTATTAATAAAACATATTTTA
*
56605190 AAATT-TT-ATAAAACCTATTTTA
1 AAATTATTAATAAAACATATTTTA
56605212 AAA
1 AAA
56605215 CTATACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 9 0.39
23 5 0.22
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (24 bp):
AAATTATTAATAAAACATATTTTA
Found at i:56611318 original size:19 final size:20
Alignment explanation
Indices: 56611294--56611335 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
56611284 CATTCCAATC
*
56611294 CATTTCACATA-TTACATTT
1 CATTTCACATATTTAAATTT
56611313 CATTTCACATATTTAAATTT
1 CATTTCACATATTTAAATTT
56611333 CAT
1 CAT
56611336 AATTCATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (20 bp):
CATTTCACATATTTAAATTT
Found at i:56614297 original size:21 final size:21
Alignment explanation
Indices: 56614268--56614308 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
56614258 CATATAAAGA
*
56614268 AAAACTTATAATTAATTTTTG
1 AAAACTTATAATGAATTTTTG
* *
56614289 AAAATTTATTATGAATTTTT
1 AAAACTTATAATGAATTTTT
56614309 AAAGTCAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (21 bp):
AAAACTTATAATGAATTTTTG
Found at i:56615243 original size:46 final size:46
Alignment explanation
Indices: 56615176--56615345 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
56615166 AACCCGCCCC
*
56615176 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* * *
56615222 TAAGTGAACTCGGACTGAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
56615270 TCA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
56615315 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
56615346 AGATGCTCAA
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 56 0.56
47 26 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:56615294 original size:93 final size:93
Alignment explanation
Indices: 56615181--56615351 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
56615171 GCCCCTAAGT
* * *
56615181 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTGAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
56615246 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
* *
56615274 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
56615339 CGAGTTCAGATGC
66 CGAGTTCAGATGC
56615352 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:56615801 original size:30 final size:30
Alignment explanation
Indices: 56615767--56615826 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
56615757 ATTTAATACG
56615767 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
56615797 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
56615827 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:56620552 original size:28 final size:28
Alignment explanation
Indices: 56620486--56620613 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
56620476 CATGAGATTG
* * **
56620486 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
56620515 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
56620543 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
56620572 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
56620600 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
56620614 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:56620575 original size:57 final size:57
Alignment explanation
Indices: 56620486--56620613 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
56620476 CATGAGATTG
*
56620486 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
56620543 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
56620600 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
56620614 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:56628483 original size:39 final size:40
Alignment explanation
Indices: 56628438--56628609 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
56628428 GCTCCTCGTT
* * *
56628438 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
56628478 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
56628517 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
56628557 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
56628597 CAAATGCCTTCGG
1 CAAATGCCTTCGG
56628610 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:56628538 original size:40 final size:39
Alignment explanation
Indices: 56628440--56628662 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
56628430 TCCTCGTTCA
* * * *
56628440 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
56628479 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
56628518 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
56628558 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
56628598 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
56628639 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
56628663 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:56628622 original size:80 final size:79
Alignment explanation
Indices: 56628438--56628662 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
56628428 GCTCCTCGTT
* * * * *
56628438 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
56628502 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
56628517 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
56628582 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
56628597 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
56628661 GA
63 GA
56628663 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:56628671 original size:41 final size:41
Alignment explanation
Indices: 56628594--56628671 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
56628584 TTTGTATCTC
* * *
56628594 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
56628635 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
56628672 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:56636482 original size:40 final size:39
Alignment explanation
Indices: 56636384--56636606 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
56636374 TCCTCGTTCA
* * * *
56636384 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
56636423 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
56636462 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
56636502 AAAGGCCTTCAGGG-CTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTC-GGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
56636542 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
56636583 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
56636607 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 38 0.24
40 102 0.65
41 15 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:56636615 original size:41 final size:41
Alignment explanation
Indices: 56636538--56636615 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
56636528 TTTGTATCTC
* * *
56636538 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
56636579 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
56636616 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:56638593 original size:29 final size:29
Alignment explanation
Indices: 56638547--56638604 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
56638537 CTTAAACCAA
*
56638547 GCCTAATTTTGCCCTACACGGCTGAGCAC
1 GCCTAATTTTGCCCTACACGACTGAGCAC
* *
56638576 GCCTTATTTTGCCTTACACGACTGAGCAC
1 GCCTAATTTTGCCCTACACGACTGAGCAC
56638605 ACGGGCGTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.28
Consensus pattern (29 bp):
GCCTAATTTTGCCCTACACGACTGAGCAC
Found at i:56642372 original size:62 final size:62
Alignment explanation
Indices: 56642296--56642414 Score: 238
Period size: 62 Copynumber: 1.9 Consensus size: 62
56642286 CCACTTTAAT
56642296 TAATCAATTTACTTAATTAATTAAAACTCAATTTACTAATGAAATATATTAAAATAACTTAC
1 TAATCAATTTACTTAATTAATTAAAACTCAATTTACTAATGAAATATATTAAAATAACTTAC
56642358 TAATCAATTTACTTAATTAATTAAAACTCAATTTACTAATGAAATATATTAAAATAA
1 TAATCAATTTACTTAATTAATTAAAACTCAATTTACTAATGAAATATATTAAAATAA
56642415 ATTATTAAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.39
Consensus pattern (62 bp):
TAATCAATTTACTTAATTAATTAAAACTCAATTTACTAATGAAATATATTAAAATAACTTAC
Found at i:56648567 original size:53 final size:53
Alignment explanation
Indices: 56648384--56648591 Score: 182
Period size: 53 Copynumber: 3.9 Consensus size: 53
56648374 CATTAGGGTT
* * * * * *
56648384 TAAGGATACCAAGTAAGACCATACCAAGGCATGGCATTGGTAAGTTTTACAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGG
* * * * * * ** *
56648438 CAATGAAATCATGTAAGACCATGTCAAGACATGGCATTAATAAATTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-C-ATAAGG
* * * * *
56648493 GAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
* * *
56648546 TAAGGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
56648592 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 33, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 46 0.39
54 34 0.29
55 39 0.33
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
Found at i:56654937 original size:24 final size:24
Alignment explanation
Indices: 56654879--56654927 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
56654869 TCAAATACAT
56654879 AGAAGAACAAAACATAGCCAAGCA
1 AGAAGAACAAAACATAGCCAAGCA
*
56654903 AGAAGAACAAAACATAGCTAAGCA
1 AGAAGAACAAAACATAGCCAAGCA
56654927 A
1 A
56654928 TTAGTTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.59, C:0.18, G:0.16, T:0.06
Consensus pattern (24 bp):
AGAAGAACAAAACATAGCCAAGCA
Found at i:56658764 original size:37 final size:37
Alignment explanation
Indices: 56658714--56658784 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
56658704 ACCTTTAGCT
* * *
56658714 CAGACGAAATCTCCACATGAAGTTATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
*
56658751 CAGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTT
56658785 TAGAGCTCGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:56660017 original size:47 final size:47
Alignment explanation
Indices: 56659948--56660587 Score: 1154
Period size: 47 Copynumber: 13.6 Consensus size: 47
56659938 CCCTTTGGGA
* * * * * * *
56659948 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56659995 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660042 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660089 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660136 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660183 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660230 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660277 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
56660324 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660371 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660418 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660465 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
56660512 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
56660559 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
56660588 TATTCAAATA
Statistics
Matches: 575, Mismatches: 16, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
47 556 0.97
49 19 0.03
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:56663286 original size:49 final size:49
Alignment explanation
Indices: 56663220--56663435 Score: 330
Period size: 49 Copynumber: 4.4 Consensus size: 49
56663210 CACGGAATAT
56663220 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
* *
56663269 TATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
* * * *
56663317 -ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 TATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACA
56663365 TATATATACACTTTCACATTCATCACATCTCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACA--TCGGCCATTAGGCCTTATCACA
56663416 TATATATACACTTTCACATT
1 TATATATACACTTTCACATT
56663436 TATTCAAATA
Statistics
Matches: 153, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
46 1 0.01
47 43 0.28
49 68 0.44
50 1 0.01
51 40 0.26
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
Found at i:56663338 original size:96 final size:96
Alignment explanation
Indices: 56663225--56663415 Score: 323
Period size: 96 Copynumber: 2.0 Consensus size: 96
56663215 AATATTATAT
56663225 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
*
56663290 ATCACAT-T-GGCCATTCGGCCTTATCACAC
66 ATCACATCTCGGCCATTAGGCCTTATCACAC
* *
56663319 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACAT
1 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
56663384 TCATCACATCTCGGCCATTAGGCCTTATCACA
64 TCATCACATCTCGGCCATTAGGCCTTATCACA
56663416 TATATATACA
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
94 6 0.07
95 1 0.01
96 63 0.70
97 1 0.01
98 19 0.21
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
ATCACATCTCGGCCATTAGGCCTTATCACAC
Found at i:56666649 original size:30 final size:30
Alignment explanation
Indices: 56666606--56666665 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
56666596 TCTGTGCGGT
* *
56666606 CTTTCCTTGTCGCGTTTGGGTATGGCACAC
1 CTTTCCCTATCGCGTTTGGGTATGGCACAC
56666636 CTTTCCCTATCGCGTTTGGGTATGGCACAC
1 CTTTCCCTATCGCGTTTGGGTATGGCACAC
56666666 GAGGTTTGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.12, C:0.28, G:0.25, T:0.35
Consensus pattern (30 bp):
CTTTCCCTATCGCGTTTGGGTATGGCACAC
Found at i:56675017 original size:30 final size:30
Alignment explanation
Indices: 56674949--56675018 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 30
56674939 AACAAAAGAG
56674949 AGGGAGAAAGAAACATAATAGTTATCGAAA
1 AGGGAGAAAGAAACATAATAGTTATCGAAA
56674979 AGGGGAGAAAGAAACATAATAGTTATCGAAA
1 A-GGGAGAAAGAAACATAATAGTTATCGAAA
56675010 AGGGAGAAA
1 AGGGAGAAA
56675019 AGAGCAAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 9 0.23
31 30 0.77
ACGTcount: A:0.53, C:0.06, G:0.27, T:0.14
Consensus pattern (30 bp):
AGGGAGAAAGAAACATAATAGTTATCGAAA
Found at i:56679578 original size:41 final size:41
Alignment explanation
Indices: 56679533--56679614 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
56679523 GTTCGACTGT
56679533 AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
1 AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
56679574 AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
1 AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
56679615 TGACTTCCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (41 bp):
AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
Found at i:56681133 original size:18 final size:17
Alignment explanation
Indices: 56681107--56681140 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
56681097 CCACAATACG
56681107 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
56681125 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
56681141 AAGCCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:56693513 original size:22 final size:22
Alignment explanation
Indices: 56693488--56693536 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
56693478 CTAAGAGAGT
*
56693488 TGAGAGAGGAGA-GAATGATGAA
1 TGAGAGAGG-GATGAATGATAAA
* *
56693510 TGAGTGAGGGATGACTGATAAA
1 TGAGAGAGGGATGAATGATAAA
56693532 TGAGA
1 TGAGA
56693537 AATGGGGTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.41, C:0.02, G:0.39, T:0.18
Consensus pattern (22 bp):
TGAGAGAGGGATGAATGATAAA
Found at i:56694320 original size:24 final size:26
Alignment explanation
Indices: 56694297--56694353 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
56694287 CAGATTAGCA
56694297 ATCTTG-TA-ATAG-CCCTCTCGAGC
1 ATCTTGATATATAGTCCCTCTCGAGC
* *
56694320 ATCCTGATATATAGTTCCTCTCGAGC
1 ATCTTGATATATAGTCCCTCTCGAGC
56694346 ATCTTGAT
1 ATCTTGAT
56694354 CGGTAGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 5 0.18
24 2 0.07
25 4 0.14
26 17 0.61
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (26 bp):
ATCTTGATATATAGTCCCTCTCGAGC
Found at i:56710988 original size:191 final size:191
Alignment explanation
Indices: 56710664--56711046 Score: 667
Period size: 191 Copynumber: 2.0 Consensus size: 191
56710654 GGCCCTCTTC
56710664 TAGTAGTCCTTATGAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
1 TAGTAGTCCTTATGAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
*
56710729 TAAAGTTAAGTGGATGTTCATGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
66 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
* *
56710794 GGAAAGTGAGAATCCATAAGAATGATAAATCATCTAGCATCCACCAAAATTAGTTGAATGG
131 GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATCCACCAAAATTAGTTGAATGG
* * * * **
56710855 TAGTAGTCCTTTTGAGTAGAATGTCAGTTTATCTACTAGAGCTATGATGTGTTTACGAGTTAGGA
1 TAGTAGTCCTTATGAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
56710920 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
66 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
* *
56710985 GGAAAGTGAGGATCCATAAGAAGGATAAAACATCTAGCATTCACCAAAATTAGTTGAATGG
131 GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATCCACCAAAATTAGTTGAATGG
56711046 T
1 T
56711047 CATAAGCTCA
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
191 181 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (191 bp):
TAGTAGTCCTTATGAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATCCACCAAAATTAGTTGAATGG
Done.