Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 173 of 276
Found at i:56713974 original size:18 final size:19
Alignment explanation
Indices: 56713943--56713991 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
56713933 AGTGTTCTCG
56713943 TGGG-CTTGGACCGTG-AA
1 TGGGCCTTGGACCGTGTAA
*
56713960 -GGGCCCTTGGGCCGTGTAA
1 TGGG-CCTTGGACCGTGTAA
56713979 TGGGCCTTGGACC
1 TGGGCCTTGGACC
56713992 CATTTGCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 3 0.12
18 10 0.38
19 10 0.38
20 3 0.12
ACGTcount: A:0.12, C:0.24, G:0.41, T:0.22
Consensus pattern (19 bp):
TGGGCCTTGGACCGTGTAA
Found at i:56714393 original size:29 final size:29
Alignment explanation
Indices: 56714343--56714398 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
56714333 CCACACTTAC
* *
56714343 TATTACTGGCAGCTACGTTGCGTTATTAT
1 TATTACTGGCAGCTACGCTGCGATATTAT
*
56714372 TATTACTGGCAGCCT-TGCTGCGATATT
1 TATTACTGGCAG-CTACGCTGCGATATT
56714399 GGTGTGCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (29 bp):
TATTACTGGCAGCTACGCTGCGATATTAT
Found at i:56716366 original size:23 final size:23
Alignment explanation
Indices: 56716314--56716426 Score: 95
Period size: 23 Copynumber: 4.8 Consensus size: 23
56716304 GCCATGACCG
*
56716314 GTAAGCTCCTCTTGAGCTGATGAACA
1 GTAAGCT-CTATTGAGCTGA--AACA
*
56716340 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATTGAGCTGAAACA
* *
56716363 GTAAGCTTTATCGAGCTG-AACA
1 GTAAGCTCTATTGAGCTGAAACA
* * *
56716385 GTAAGCTC-ATACGAGCTGGAATA
1 GTAAGCTCTAT-TGAGCTGAAACA
* *
56716408 GTAAGCTCCAATGAGCTGA
1 GTAAGCTCTATTGAGCTGA
56716427 TAAATCAGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
21 2 0.03
22 17 0.23
23 36 0.49
24 1 0.01
25 11 0.15
26 7 0.09
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:56717387 original size:16 final size:16
Alignment explanation
Indices: 56717362--56717395 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
56717352 AGGGGGCAAA
*
56717362 AATGTAATTTTTGTAT
1 AATGTAATTTTTGGAT
*
56717378 AATGTGATTTTTGGAT
1 AATGTAATTTTTGGAT
56717394 AA
1 AA
56717396 AATAAATAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (16 bp):
AATGTAATTTTTGGAT
Found at i:56727258 original size:14 final size:13
Alignment explanation
Indices: 56727233--56727263 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
56727223 ATTAAAAAAA
56727233 TTTATTTTATTAT
1 TTTATTTTATTAT
56727246 TTTATTATTATTAT
1 TTTATT-TTATTAT
56727260 TTTA
1 TTTA
56727264 ATGTCTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTATTTTATTAT
Found at i:56728692 original size:48 final size:46
Alignment explanation
Indices: 56728576--56728696 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
56728566 TGATATGTGT
* *
56728576 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAA
* * * *
56728622 GCCAATGTAAGACATGTTTGGGACATGCATTGGCCTCAAGATAT-ACAA
1 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGA-AA
* *
56728670 GCTAGTGTAAGACTTGTCTGGGACATG
1 GCTAATGTAAGACATGTCTGGGACATG
56728697 GCGTCAGCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 33 0.53
47 2 0.03
48 27 0.44
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (46 bp):
GCTAATGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAA
Found at i:56738825 original size:37 final size:37
Alignment explanation
Indices: 56738775--56738849 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
56738765 TTATTATGAA
* * *
56738775 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
56738812 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
56738849 G
1 G
56738850 CCTTTAGAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:56739094 original size:49 final size:49
Alignment explanation
Indices: 56738972--56739633 Score: 1053
Period size: 49 Copynumber: 13.8 Consensus size: 49
56738962 CCCTTCGGGA
* * * * *
56738972 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56739019 CCTGTCACATAT-T-TACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56739066 CTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56739115 CTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56739164 CTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56739213 CTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56739262 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56739311 CTTATCAC--ATATATACACTTTCATATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56739358 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56739407 CTTATCACATATATATACACTTTCACATTCATCGCATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56739456 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56739503 CTTATCACATATATATACACTTTCACATTCATCGCATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56739552 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56739599 CTTATCTC--ATATATACA-TGTTCACATCCATCACAT
1 CTTATCACATATATATACACT-TTCACATTCATCACAT
56739634 AGAATCCTAA
Statistics
Matches: 583, Mismatches: 24, Indels: 16
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 205 0.35
48 3 0.01
49 374 0.64
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:56739380 original size:96 final size:96
Alignment explanation
Indices: 56738972--56739633 Score: 1032
Period size: 96 Copynumber: 6.9 Consensus size: 96
56738962 CCCTTCGGGA
* * * * * * * *
56738972 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATTTAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
56739035 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
56739066 CTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA--T
56739131 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
56739164 CTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA--T
56739229 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
56739262 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
56739327 ACTTTCATATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
56739358 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
56739423 ACACTTTCACATTCATCGCATCAGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
56739456 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
56739519 ACACTTTCACATTCATCGCATCAGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
56739552 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
56739615 A-TGTTCACATCCATCACAT
66 ACT-TTCACATTCATCACAT
56739634 AGAATCCTAA
Statistics
Matches: 542, Mismatches: 19, Indels: 14
0.94 0.03 0.02
Matches are distributed among these distances:
93 1 0.00
94 33 0.06
95 1 0.00
96 271 0.50
98 236 0.44
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:56739422 original size:145 final size:145
Alignment explanation
Indices: 56738972--56739633 Score: 1091
Period size: 145 Copynumber: 4.6 Consensus size: 145
56738962 CCCTTCGGGA
* * * * * * * *
56738972 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATTTAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
56739035 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTTACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
56739100 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
56739115 CTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA--T
*
56739180 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTTACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
56739245 CACATCGGCCATTAGGC
129 CACATCGGCCATTAGGC
56739262 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
56739327 ACTTTCATATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
56739392 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
* *
56739407 CTTATCACATATATATACACTTTCACATTCATCGCATCAGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
56739472 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCG
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
56739537 CATCAGCCATTAGGC
131 CATCGGCCATTAGGC
*
56739552 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
56739615 A-TGTTCACATCCATCACAT
66 ACT-TTCACATTCATCACAT
56739634 AGAATCCTAA
Statistics
Matches: 491, Mismatches: 23, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
142 1 0.00
143 78 0.16
144 1 0.00
145 267 0.54
147 144 0.29
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:56742361 original size:20 final size:21
Alignment explanation
Indices: 56742336--56742374 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
56742326 TCACTTAACA
*
56742336 AAACTTGTATAA-CTATCACC
1 AAACTTCTATAATCTATCACC
56742356 AAACTTCTATAATCTATCA
1 AAACTTCTATAATCTATCA
56742375 TTAAACATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.41, C:0.23, G:0.03, T:0.33
Consensus pattern (21 bp):
AAACTTCTATAATCTATCACC
Found at i:56745033 original size:45 final size:44
Alignment explanation
Indices: 56744969--56745086 Score: 148
Period size: 45 Copynumber: 2.6 Consensus size: 44
56744959 CGAAAGCTAG
* *
56744969 TGTAAGACAGGTCTGGGACATGCATCAGCCT-CGAGATGTAATCTA
1 TGTAAGACATGTCTGGGACATGCATC-GCCTACGAGATGT-ATCAA
* * *
56745014 TGTAAGACATGTATGGGACATGCATCGGCTATGAGATGTATCAA
1 TGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTATCAA
56745058 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
56745087 ACATTACACC
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 14 0.22
45 44 0.69
46 6 0.09
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTATCAA
Found at i:56750069 original size:42 final size:42
Alignment explanation
Indices: 56750020--56750175 Score: 213
Period size: 42 Copynumber: 3.7 Consensus size: 42
56750010 TGAGATTATG
* *
56750020 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
1 TGTAAGACCATATCTAGGATATGGCATTGATATGAGATTTCA
* *
56750062 TGTAAGACCATATCTAGGATATGGTATTGATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATGGCATTGATATGAGATTTCA
* * * *
56750104 TGTAAGACCATAGCTAGGCTATTGGCATTGATACGAGATTACA
1 TGTAAGACCATATCTAGGATA-TGGCATTGATATGAGATTTCA
* *
56750147 TGTAAGACCATATTTGGGATATGGCATTG
1 TGTAAGACCATATCTAGGATATGGCATTG
56750176 GTAAGGTACT
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 65 0.66
43 34 0.34
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATTGATATGAGATTTCA
Found at i:56750152 original size:85 final size:84
Alignment explanation
Indices: 56750010--56750175 Score: 226
Period size: 85 Copynumber: 2.0 Consensus size: 84
56750000 TTAGGGTTAC
* * * *
56750010 TGAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCATGTAAGACCATAT
1 TGAGATTATGTGTAAGACCATAGCTAGGATATGGCATCGATACGAGATTACATGTAAGACCATAT
*
56750075 CTAGGATATGGTATTGATA
66 CTAGGATATGGCATTGATA
* *
56750094 TGAGATT-TCGTGTAAGACCATAGCTAGGCTATTGGCATTGATACGAGATTACATGTAAGACCAT
1 TGAGATTAT-GTGTAAGACCATAGCTAGGATA-TGGCATCGATACGAGATTACATGTAAGACCAT
* *
56750158 ATTTGGGATATGGCATTG
64 ATCTAGGATATGGCATTG
56750176 GTAAGGTACT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
83 1 0.01
84 26 0.37
85 44 0.62
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.33
Consensus pattern (84 bp):
TGAGATTATGTGTAAGACCATAGCTAGGATATGGCATCGATACGAGATTACATGTAAGACCATAT
CTAGGATATGGCATTGATA
Found at i:56752954 original size:27 final size:26
Alignment explanation
Indices: 56752923--56753100 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
56752913 TAAATTGTAC
*
56752923 AGCACTAAGTGTGCGATTCGACTTTGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
56752950 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
56752976 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
56753004 AGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
56753032 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
56753059 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
56753086 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
56753101 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.78
28 27 0.21
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:56753090 original size:82 final size:81
Alignment explanation
Indices: 56752920--56753100 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
56752910 GATTAAATTG
* * * *
56752920 TACAGCACTAAGTGTGCGATTCGACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
56752985 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* ** *
56753001 TGCAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
56753065 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
56753083 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
56753101 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 21 0.25
82 63 0.75
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:56755002 original size:42 final size:42
Alignment explanation
Indices: 56754923--56755003 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
56754913 AGTATCGAGC
* *
56754923 ACACGGGCAGAGACACGGGCGTGTGTCTCAGTTGTGTAAAGG
1 ACACGGCCAGAGACACGGGCGTGTGTCTCAGTCGTGTAAAGG
* * **
56754965 ACACGGCCAGGGACACGGGTGTGTGTCTTGGTCGTGTAA
1 ACACGGCCAGAGACACGGGCGTGTGTCTCAGTCGTGTAA
56755004 CTTCAATTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.21, C:0.20, G:0.38, T:0.21
Consensus pattern (42 bp):
ACACGGCCAGAGACACGGGCGTGTGTCTCAGTCGTGTAAAGG
Found at i:56759983 original size:45 final size:44
Alignment explanation
Indices: 56759930--56760019 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 44
56759920 TTCAACTTGG
56759930 CCGAATAGAAGAAAGAAAAAGAAGGGAAAGAGCTTGGAGAAAAT
1 CCGAATAGAAGAAAGAAAAAGAAGGGAAAGAGCTTGGAGAAAAT
* *
56759974 CNCGAATAGAAGAAAGAAAGAGAGGGGAAAGAGCTTGGAGAAAAT
1 C-CGAATAGAAGAAAGAAAAAGAAGGGAAAGAGCTTGGAGAAAAT
56760019 C
1 C
56760020 GGCTATGGTG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.51, C:0.08, G:0.31, T:0.09
Consensus pattern (44 bp):
CCGAATAGAAGAAAGAAAAAGAAGGGAAAGAGCTTGGAGAAAAT
Found at i:56761300 original size:40 final size:40
Alignment explanation
Indices: 56761098--56761286 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
56761088 TATTCAGATG
* * *
56761098 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
56761138 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
56761178 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
56761218 TTAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
56761258 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
56761287 AGCAAGTAGC
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:56761319 original size:39 final size:40
Alignment explanation
Indices: 56761098--56761319 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
56761088 TATTCAGATG
* * * *
56761098 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
* * * *
56761138 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
*
56761178 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
*
56761218 TTAACCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG-AGCGAGTTACT
*
56761258 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CT
* * *
56761298 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
56761320 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 18 0.11
40 144 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
Found at i:56777699 original size:80 final size:80
Alignment explanation
Indices: 56777566--56777724 Score: 318
Period size: 80 Copynumber: 2.0 Consensus size: 80
56777556 GTGCGGGTAT
56777566 AACCATTTATGACCATGAGATTGGCGCTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGC
1 AACCATTTATGACCATGAGATTGGCGCTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGC
56777631 GAGTTGGACTATGTA
66 GAGTTGGACTATGTA
56777646 AACCATTTATGACCATGAGATTGGCGCTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGC
1 AACCATTTATGACCATGAGATTGGCGCTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGC
56777711 GAGTTGGACTATGT
66 GAGTTGGACTATGT
56777725 TGCACTAAGT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
AACCATTTATGACCATGAGATTGGCGCTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGC
GAGTTGGACTATGTA
Found at i:56777756 original size:27 final size:27
Alignment explanation
Indices: 56777697--56777821 Score: 187
Period size: 27 Copynumber: 4.6 Consensus size: 27
56777687 TAAATTGTAC
56777697 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGT
* *
56777725 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
56777752 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
56777780 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
56777807 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
56777822 GACTTAATAT
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
27 45 0.51
28 43 0.49
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:56777762 original size:55 final size:55
Alignment explanation
Indices: 56777697--56777821 Score: 196
Period size: 55 Copynumber: 2.3 Consensus size: 55
56777687 TAAATTGTAC
* *
56777697 AGCACTAAGTGTGCGAGTTGGACTATGTTGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATAT
* * *
56777752 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATAT
*
56777807 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
56777822 GACTTAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATAT
Found at i:56802477 original size:21 final size:20
Alignment explanation
Indices: 56802438--56802477 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
56802428 TGGTCCGTAA
*
56802438 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCACTTTTG
*
56802458 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
56802478 TCCGAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.33, G:0.25, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTG
Found at i:56803308 original size:15 final size:15
Alignment explanation
Indices: 56803284--56803313 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
56803274 CTAATGTATT
56803284 TTTTGAGGTTTCGAC
1 TTTTGAGGTTTCGAC
*
56803299 TTTTGTGGTTTCGAC
1 TTTTGAGGTTTCGAC
56803314 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.13, G:0.27, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGAC
Found at i:56805151 original size:54 final size:54
Alignment explanation
Indices: 56805088--56805197 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
56805078 CCCACTCACA
* *
56805088 AAGTCCATTGTTACTCTTTCCCACTTCCATGGCGGAATTTTCACATGTTGCAGT
1 AAGTCCATTGTTACTCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGT
*
56805142 AAGTCCATTGTTCCTCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGT
1 AAGTCCATTGTTACTCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGT
56805196 AA
1 AA
56805198 TCCCGAAGGC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.35
Consensus pattern (54 bp):
AAGTCCATTGTTACTCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGT
Found at i:56810457 original size:21 final size:20
Alignment explanation
Indices: 56810418--56810457 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
56810408 TGGTCTGTAA
*
56810418 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCACTTTTG
*
56810438 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
56810458 TCCGAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.33, G:0.25, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTG
Found at i:56822818 original size:40 final size:40
Alignment explanation
Indices: 56822770--56823796 Score: 1644
Period size: 40 Copynumber: 25.7 Consensus size: 40
56822760 GCAAACACAT
* *
56822770 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56822810 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56822850 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56822890 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56822930 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56822970 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823010 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823050 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823090 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823130 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823170 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823210 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823250 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823290 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823330 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823370 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823410 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823450 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823490 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823530 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823570 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823610 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823650 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCT-TAGCCCGGATATATCAACTCGCATAA
*
56823690 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
56823730 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
56823770 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
56823797 ATCCAATGCT
Statistics
Matches: 915, Mismatches: 50, Indels: 44
0.91 0.05 0.04
Matches are distributed among these distances:
39 11 0.01
40 893 0.98
41 11 0.01
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:56822903 original size:80 final size:80
Alignment explanation
Indices: 56822770--56823796 Score: 1993
Period size: 80 Copynumber: 12.8 Consensus size: 80
56822760 GCAAACACAT
* **
56822770 TTGCCTTCGGGTCT-TAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
1 TTGCCTTCGGGT-TATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
56822834 ATATCATCTCGCATAA
65 ATATCATCTCGCATAA
56822850 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56822915 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56822930 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56822995 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823010 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823075 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823090 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823155 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823170 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823235 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823250 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823315 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823330 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823395 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823410 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823475 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823490 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823555 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823570 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823635 TATCATCTCGCATAA
66 TATCATCTCGCATAA
56823650 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823715 TATCATCTCGCATAA
66 TATCATCTCGCATAA
* *
56823730 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
56823795 TA
66 TA
56823797 ATCCAATGCT
Statistics
Matches: 941, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
79 1 0.00
80 940 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (80 bp):
TTGCCTTCGGGTTATAGCCCGGGTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCATCTCGCATAA
Found at i:56831644 original size:101 final size:101
Alignment explanation
Indices: 56831469--56831670 Score: 395
Period size: 101 Copynumber: 2.0 Consensus size: 101
56831459 AGGTAAACTT
*
56831469 TACCTATTTTGTGGTTACCATGTACCAACTAGGGCTTTGCCATACATAGGTCCACATGTGATCAT
1 TACCTATTTTGTGGTTACCATGGACCAACTAGGGCTTTGCCATACATAGGTCCACATGTGATCAT
56831534 ATTTAGCCATTCCAATGGCTGATCATTAGCCCAACA
66 ATTTAGCCATTCCAATGGCTGATCATTAGCCCAACA
56831570 TACCTATTTTGTGGTTACCATGGACCAACTAGGGCTTTGCCATACATAGGTCCACATGTGATCAT
1 TACCTATTTTGTGGTTACCATGGACCAACTAGGGCTTTGCCATACATAGGTCCACATGTGATCAT
56831635 ATTTAGCCATTCCAATGGCTGATCATTAGCCCAACA
66 ATTTAGCCATTCCAATGGCTGATCATTAGCCCAACA
56831671 CTTCCATTTC
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 100 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (101 bp):
TACCTATTTTGTGGTTACCATGGACCAACTAGGGCTTTGCCATACATAGGTCCACATGTGATCAT
ATTTAGCCATTCCAATGGCTGATCATTAGCCCAACA
Found at i:56832351 original size:40 final size:40
Alignment explanation
Indices: 56832303--56832729 Score: 764
Period size: 40 Copynumber: 10.7 Consensus size: 40
56832293 GCAAACACAT
* *
56832303 TTGCCTTCGGGTCTTAACCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
56832343 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
56832383 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
56832423 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
56832463 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
56832503 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
56832543 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
56832583 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
56832623 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
56832663 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
56832703 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCATAGCCCGGATATA
56832730 ATCCAATGCT
Statistics
Matches: 371, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 371 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
Found at i:56835978 original size:50 final size:50
Alignment explanation
Indices: 56835903--56836008 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
56835893 ACAATTCAGC
*
56835903 TAGTTTATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACT
1 TAGTTAATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACT
56835953 TAGTTAATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACT
1 TAGTTAATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACT
56836003 TAGTTA
1 TAGTTA
56836009 GTCTATCGAC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (50 bp):
TAGTTAATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACT
Found at i:56836415 original size:118 final size:118
Alignment explanation
Indices: 56836206--56836441 Score: 332
Period size: 118 Copynumber: 2.0 Consensus size: 118
56836196 GTTCTGCCTT
* * *
56836206 CACTTGTTGACATACTAAGCACTTCGAGATAAAATCGGAAATGTCTCGTTTCATACCATGCCACC
1 CACTTGTTGACATACTAAACACTTCGAAACAAAATCGGAAATGTCTCGTTTCATACCATGCCACC
**
56836271 AAAACTGACATCTTAGGTCGTGGTACATTTTCGTACTCCCCGGGTGAATTGAC
66 AAAACTGACATCTTAAATCGTGGTACATTTTCGTACTCCCCGGGTGAATTGAC
* * * *
56836324 CACTTGTTGACATATTAAACA-TCTCGAAACAAAGTCGGAGATGTCTTGTTTCATACCATGCCAC
1 CACTTGTTGACATACTAAACACT-TCGAAACAAAATCGGAAATGTCTCGTTTCATACCATGCCAC
* * *
56836388 CAAAACTGACGT-TTCAAATCGTTGTACATTTTTGTACTCCCCGGGTGAATTGAC
65 CAAAACTGACATCTT-AAATCGTGGTACATTTTCGTACTCCCCGGGTGAATTGAC
56836442 ATCCGGCTAC
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
117 3 0.03
118 101 0.97
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (118 bp):
CACTTGTTGACATACTAAACACTTCGAAACAAAATCGGAAATGTCTCGTTTCATACCATGCCACC
AAAACTGACATCTTAAATCGTGGTACATTTTCGTACTCCCCGGGTGAATTGAC
Found at i:56841932 original size:3 final size:3
Alignment explanation
Indices: 56841919--56841963 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
56841909 GCCGCTTACA
56841919 AAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
56841964 GTTTAATCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:56845079 original size:46 final size:46
Alignment explanation
Indices: 56844991--56845116 Score: 141
Period size: 46 Copynumber: 2.7 Consensus size: 46
56844981 GGTAAGGTGC
* * *
56844991 CGATGCCATGTCCCAGA-ATGGTCTTACACT-GATAATCATCTCGTAGCT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCG-AGCT
* * *
56845039 -GATGCCTGTCCCAGACATGTCTTACATTGGCTTACGTCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGCT
56845084 CGATGCATGTCCCAGACATGTCTTACACTGGCT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCT
56845117 CACACACGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
45 3 0.04
46 55 0.82
47 9 0.13
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGCT
Found at i:56849476 original size:46 final size:46
Alignment explanation
Indices: 56849409--56849577 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
56849399 AACCCGCCCC
* *
56849409 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
56849455 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
56849503 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
56849548 TAGGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
56849578 TGGATGCTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 56 0.54
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:56849522 original size:93 final size:93
Alignment explanation
Indices: 56849414--56849584 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
56849404 GCCCCTAAGT
* *
56849414 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
56849479 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
56849507 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
56849572 CGAGTTTGGATGC
66 CGAGTTCGGATGC
56849585 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:56857018 original size:93 final size:93
Alignment explanation
Indices: 56856909--56857079 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
56856899 TCCCCTAAGT
**** * *
56856909 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCTTAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAAAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
56856974 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
56857002 GAACTCGGACTCAACTCAACGAGTTAAAATATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAAAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
56857067 CGAGTTCGGATGC
66 CGAGTTCGGATGC
56857080 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTAAAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:56858536 original size:36 final size:36
Alignment explanation
Indices: 56858489--56858562 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
56858479 TTGCATAAGA
56858489 ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
1 ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
56858525 ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
1 ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
56858561 AC
1 AC
56858563 AAACTCCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (36 bp):
ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
Found at i:56862128 original size:22 final size:21
Alignment explanation
Indices: 56862088--56862128 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
56862078 CACTTGACAC
*
56862088 AGGGGCACACGCTCATGTGGG
1 AGGGGCACACGCCCATGTGGG
*
56862109 AGGGGCAACACGCCCGTGTG
1 AGGGGC-ACACGCCCATGTG
56862129 AGCATTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.27, G:0.41, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGG
Found at i:56867319 original size:24 final size:23
Alignment explanation
Indices: 56867286--56867338 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
56867276 ATGTATTGGC
* *
56867286 AAAAGCCGAAATGCCGAAAAGCT
1 AAAAGTCGAAATGCCAAAAAGCT
56867309 GAAAAGTCGAAATGCCAAAAAGCT
1 -AAAAGTCGAAATGCCAAAAAGCT
56867333 AAAAGT
1 AAAAGT
56867339 TTGGCTACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.51, C:0.17, G:0.21, T:0.11
Consensus pattern (23 bp):
AAAAGTCGAAATGCCAAAAAGCT
Found at i:56867541 original size:29 final size:29
Alignment explanation
Indices: 56867504--56867631 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
56867494 ATGAACGTGA
*
56867504 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
56867533 TGGGCCTAATGGACCATATACA-G-G-TT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
56867559 TGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
56867588 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
56867616 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
56867632 GATACAGGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.26
27 2 0.02
28 18 0.21
29 44 0.51
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:56869616 original size:3 final size:3
Alignment explanation
Indices: 56869608--56870414 Score: 1614
Period size: 3 Copynumber: 269.0 Consensus size: 3
56869598 CCAAAAAACA
56869608 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56869656 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56869704 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56869752 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56869800 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56869848 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56869896 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56869944 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56869992 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870040 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870088 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870136 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870184 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870232 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870280 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870328 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870376 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56870415 CCGTTGTTTT
Statistics
Matches: 804, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 804 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:56876026 original size:21 final size:22
Alignment explanation
Indices: 56875975--56876031 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
56875965 CTATAACAAA
56875975 AAAATTATATCATTAATACCCC
1 AAAATTATATCATTAATACCCC
56875997 AAAATTATATCATTAATACCCC
1 AAAATTATATCATTAATACCCC
*
56876019 -ACATTATA-CATTA
1 AAAATTATATCATTA
56876032 CAAATCTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 5 0.15
21 7 0.21
22 22 0.65
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATTATATCATTAATACCCC
Found at i:56878518 original size:27 final size:27
Alignment explanation
Indices: 56878488--56878665 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
56878478 ATATTGAGTC
* * * *
56878488 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
56878515 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
56878542 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
56878570 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
56878597 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
56878624 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
56878651 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56878666 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:56878627 original size:82 final size:81
Alignment explanation
Indices: 56878509--56878664 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
56878499 TGCTATATAA
* *
56878509 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
56878574 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
56878591 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
56878655 CACTTAGTGC
65 CACTTAGTGC
56878665 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:56897382 original size:46 final size:46
Alignment explanation
Indices: 56897332--56897507 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
56897322 TGGTTGAGCA
56897332 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
56897378 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
56897423 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
56897471 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
56897508 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:56897488 original size:93 final size:93
Alignment explanation
Indices: 56897329--56897500 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
56897319 GGATGGTTGA
*
56897329 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
56897394 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
56897422 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
56897487 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
56897501 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:56902757 original size:20 final size:20
Alignment explanation
Indices: 56902732--56902779 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
56902722 CAGGCTGAGG
56902732 ACACAGGCGTGTCCCAAGCC
1 ACACAGGCGTGTCCCAAGCC
56902752 ACACAGGCGTGTCCCAAGCC
1 ACACAGGCGTGTCCCAAGCC
56902772 ACACAGGC
1 ACACAGGC
56902780 ATGTGTGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.27, C:0.40, G:0.25, T:0.08
Consensus pattern (20 bp):
ACACAGGCGTGTCCCAAGCC
Found at i:56910900 original size:43 final size:42
Alignment explanation
Indices: 56910853--56911004 Score: 123
Period size: 43 Copynumber: 3.6 Consensus size: 42
56910843 ATCGAGATGT
56910853 GATTACATGTAAGACCATGTCTGGAACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGG-ACATTGGCATTGTATTGA
* * * * *
56910896 GATTACGTGTAAGAGCATGTCTAGACATTGGCATCAT-TAAT-C
1 GATTACATGTAAGACCATGTCTGGACATTGGCAT--TGTATTGA
* * * * *
56910938 GATTACGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCT-GGACATTGGCATTGTAT-TGA
*
56910981 GA-TAGCATGTAAGACCATATCTGG
1 GATTA-CATGTAAGACCATGTCTGG
56911005 GATATGGCAT
Statistics
Matches: 87, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
41 1 0.01
42 35 0.40
43 50 0.57
44 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGACATTGGCATTGTATTGA
Found at i:56910942 original size:42 final size:43
Alignment explanation
Indices: 56910853--56910959 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 43
56910843 ATCGAGATGT
* * *
56910853 GATTACATGTAAGACCATGTCTGGAACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTAGAACATTGGCATTGTAATGA
* *
56910896 GATTACGTGTAAGAGCATGTCTAG-ACATTGGCATCAT-TAAT-C
1 GATTACGTGTAAGACCATGTCTAGAACATTGGCAT--TGTAATGA
*
56910938 GATTACGTGTAAGACCCTGTCT
1 GATTACGTGTAAGACCATGTCT
56910960 GGGACAGTGG
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
42 30 0.55
43 24 0.44
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTAGAACATTGGCATTGTAATGA
Found at i:56914527 original size:891 final size:890
Alignment explanation
Indices: 56911993--56914656 Score: 4357
Period size: 890 Copynumber: 3.0 Consensus size: 890
56911983 GAGACATGGG
* * * * ** *
56911993 CGTGTGTGTCAGCCGTGTGCGATACATGGTCATGTTACATGG-CTGTGTGTCCCCTGGATTACAC
1 CGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTC-GTGTGTCCCCTGGGGTACCC
* * * * * *
56912057 TTTCAAATTAAGGCAGTGTACCTTACAGTTTTGACACAGCCTAGACACACAGGCATGTCTATTGG
65 TTTCGAATTAAGGCAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAG
* * * * *
56912122 CCATGTGAGACACACAGCCTTGGCACATGGGCGTGTGTGGCCATTGCGAAAGGTACATGGGGTTG
130 CCATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTG
* * * * * *
56912187 ACACACAGGCGTGTGGTCGACCGTGTGGCCAAGTCAGTAACCTCTTTATTTTTTTTCACGGCCAT
195 AGACACGGGCGTGTGGTCAATCGAGTGGCCAGGTCAGTAACCTCTTTA-TTTTTTTCACGGCCAT
* * * * *
56912252 GGAACACGGATGTGTCTTCAGCCATGTGGTACAAATCAATATGTATGCCCTATTTTCACACGGCC
259 GGAACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGCC
* * * * * * **
56912317 TGTGACATGGGTGTGTCTA-GTAGCTGTGTGAGGCATACGACCTATTCATATAGGTGTGTGACCT
324 TGTGACACGGGCGTGTC-AGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCT
56912381 TTAAATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAACC
388 TTAAATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAACC
56912446 TCTTCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGGA
453 TCTTCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGGA
*
56912511 TTTTGATTATGATTGCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCT
518 TTTTGATTATGATTTCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCT
*
56912576 ATTCTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTAATC
583 ATTCTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATTC
*
56912641 ACTGATCATAAAATTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGATG
648 ACTGATCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGATG
56912706 GTTGGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCAACTGGGAAAGGTGAATGTGGTTG
713 GTTGGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACC-ACTGGGAAAGGTGAATGTGGTTG
*
56912771 CCGATGCTTTGAGTAGGAAGTCATTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATCA
777 CCGATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATCA
*
56912836 GATGATGGTTTGATTCTACCTGATTTGGGAGCTAGACCGATGTTTTAGA
842 GATGATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGATGTTTTAGA
* *
56912885 TGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTAGGGTACCCT
1 CGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTGGGGTACCCT
* * *
56912950 TTCGAATTAGGGTAGTATACCTTACAGTTTTGACATGGCCTAGACACACGGGCGTGTCTATTAGC
66 TTCGAATTAAGGCAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAGC
*
56913015 CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGAGTTTGA
131 CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTGA
*
56913080 GACACGGGCGTGTGGTCAATTGAGTGGCCAGGTCAGTAACCTCTTTATTTTTTTCACGGCCATGG
196 GACACGGGCGTGTGGTCAATCGAGTGGCCAGGTCAGTAACCTCTTTATTTTTTTCACGGCCATGG
*
56913145 AACAC-GACGTGTCTTCGGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGCCTG
261 AACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGCCTG
* *
56913209 TGACACGGGCGTGTCTGGTAGCCGTGTGAGGCACACAGCCTGTTCATACGGGTGTGTGACCTTTA
326 TGACACGGGCGTGTCAGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCTTTA
*
56913274 AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAACTGTTATCAATTTAGCCCCGAACCTCT
391 AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAACCTCT
* * * *
56913339 TCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGAGACAATATAATTGAGATTAATAGATTT
456 TCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGGATTT
56913404 TGATTATGATTTCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCTATT
521 TGATTATGATTTCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCTATT
*
56913469 CTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGTGAGAAATGTCGAGTATTCACT
586 CTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATTCACT
* * *
56913534 GATCATAAAAGTTTAAAGTATTTGATGACTCAAAAAGATTTGAACCTATGACAAAGGTGATGGTT
651 GATCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGATGGTT
*
56913599 GGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCACTTGGGAAAGGTGAATGTGGTTGTCG
716 GGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCAC-TGGGAAAGGTGAATGTGGTTGCCG
*
56913664 ATGCTTTGAGTAGGAAGTCGTTGTTTGCCTTGAGGGCTATGAACACTCAGTTGGCTTTATCAGAT
780 ATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATCAGAT
*
56913729 GATGGTTTGATTCTAGCTAATTTGGGAGCTAGACCGATGTTTTAGA
845 GATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGATGTTTTAGA
*
56913775 CGTGTGTGTCAACCATGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTGGGGTACCCT
1 CGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTGGGGTACCCT
* *
56913840 TTCGAATTAAGGCAGTATACATTACAGTTTTGACACGGCCTAGACACACGGGCGTGCCTATTAGC
66 TTCGAATTAAGGCAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAGC
56913905 CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTGA
131 CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTGA
* *
56913970 GACACGGGCGTGTGGTCAATCGAGTGGCCAGGTGAGTAACCTCTTTATTTTTTTCACGGCCATAG
196 GACACGGGCGTGTGGTCAATCGAGTGGCCAGGTCAGTAACCTCTTTATTTTTTTCACGGCCATGG
* * * *
56914035 AACACGGACGTGTCTTCAGCTGTGTGGTACAAGTCAGTATGTATGCCTTGTTTTCACATGGACTG
261 AACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGCCTG
*
56914100 TGACACAGGCGTGTCAGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCTTTA
326 TGACACGGGCGTGTCAGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCTTTA
*
56914165 AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGTCCCGAACCTCT
391 AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAACCTCT
** * * *
56914230 TCTAAGCATGTTTTAAGGTCTCGTAGGACCAGAGAAGGGACAATATGACTAAGATGAATGGATTT
456 TCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGGATTT
* * *
56914295 TGATTATGATTTCAATGATGTATATGAATGATGTGTATTATCCGGTGATGCCTCATAACCCTATT
521 TGATTATGATTTCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCTATT
* * * * * *
56914360 -TTGACGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGACGAGACATGTCGACTATTTAC
586 CTAG-TGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATTCAC
* *
56914424 TGGTCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTAAACCTATGACAAAGGAGATGGT
650 TGATCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGATGGT
* * *
56914489 TGGAGTTGTTAAAAGATTACGAGGTAGTGATTGACTACCACCTGGGAAA-GAGAATATGGTTGCC
715 TGGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCA-CTGGGAAAGGTGAATGTGGTTGCC
*
56914553 GATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTTAGTTGGCTTTATCAGA
779 GATGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATCAGA
* *
56914618 TGATGGTTTGATTCTAGCTGAGTTGAGAGCTAGACCGAT
844 TGATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGAT
56914657 ATTTCTCCAA
Statistics
Matches: 1647, Mismatches: 119, Indels: 14
0.93 0.07 0.01
Matches are distributed among these distances:
889 2 0.00
890 954 0.58
891 480 0.29
892 210 0.13
893 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (890 bp):
CGTGTGTGTCAACCGTGTGAGACACACGGTCATGTTACATGGTCGTGTGTCCCCTGGGGTACCCT
TTCGAATTAAGGCAGTATACCTTACAGTTTTGACACGGCCTAGACACACGGGCGTGTCTATTAGC
CATGTGAGACACACAACCTTGGCACATGGGCGTGTGTGGCCATTTCAAAAGGTACACGGGTTTGA
GACACGGGCGTGTGGTCAATCGAGTGGCCAGGTCAGTAACCTCTTTATTTTTTTCACGGCCATGG
AACACGGACGTGTCTTCAGCCGTGTGGTACAAGTCAGTATGTATGCCCTGTTTTCACACGGCCTG
TGACACGGGCGTGTCAGGTAGCCGTGTGAGGCACACGGCCTGTTCATACGGGTGTGTGACCTTTA
AATGTTTGAAAATTTTCTATGTTTCCCAAAGTTTATAAATGTTATCAATTTAGCCCCGAACCTCT
TCTAAGCATGTTTTAAGGTCTCGTAGGACCTTAAAAGGGACAATATGATTGAGATGAATGGATTT
TGATTATGATTTCAATAATGTATATGAATGATGTGTATTATCCAGTGATGCCTCGTAACCCTATT
CTAGTGACGGATACAAGTTAGGGGTGTTACATCATTTGTATGGCGAGAAATGTCGAGTATTCACT
GATCATAAAAGTCTAAAGTATTTGATGACTCAAAAGGATTTGAACCTATGACAAAGGAGATGGTT
GGAGTTGTTAAAAGATTACGAGTTAGTGATTGACTACCACTGGGAAAGGTGAATGTGGTTGCCGA
TGCTTTGAGTAGGAAGTCGTTGTTTGCATTGAGGGCTATGAACACTCAGTTGGCTTTATCAGATG
ATGGTTTGATTCTAGCTGATTTGGGAGCTAGACCGATGTTTTAGA
Found at i:56917588 original size:107 final size:107
Alignment explanation
Indices: 56917363--56917702 Score: 459
Period size: 107 Copynumber: 3.2 Consensus size: 107
56917353 TTATAGTACA
* ** * * *
56917363 AGGGTATTTC-GATAATTTTACAAATC-AAGGATATTTTAGTAATTTTACAAATAGAGGGTGTTT
1 AGGGTATTTCAG-TAATTTTACAAAACGAAGG-TATTTTAGTAATTCCAC-AATCGAGTGTATTT
** * * * *
56917426 TTGTAATTTTAAAAATTGAGGGTGTTTCGGTAATTTTACAAATCG
63 CGGTAATTTTACAAATTGGGGGTATTTCGATAATTTTACAAATCG
*
56917471 AGGGTATTTCAGTAATTTTACAAAACGAAGGTATTTTAGTAATTCCACGATCGAGTGTATTTCGG
1 AGGGTATTTCAGTAATTTTACAAAACGAAGGTATTTTAGTAATTCCACAATCGAGTGTATTTCGG
* *
56917536 TAATTTTACAAATCGGGGGTATTTCAATAATTTTACAAATCG
66 TAATTTTACAAATTGGGGGTATTTCGATAATTTTACAAATCG
* * * *
56917578 AAGGTATTTCAGTAATTTTACAAAATGAGGGTATTTCAGTAATTCCACAATCGAGTGTATTTCGG
1 AGGGTATTTCAGTAATTTTACAAAACGAAGGTATTTTAGTAATTCCACAATCGAGTGTATTTCGG
56917643 TAATTTTACAAATTGGGGGTATTTCGATAATTTTACAAATCG
66 TAATTTTACAAATTGGGGGTATTTCGATAATTTTACAAATCG
*
56917685 AGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
56917703 CTCTTTATTA
Statistics
Matches: 206, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
107 163 0.79
108 38 0.18
109 5 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (107 bp):
AGGGTATTTCAGTAATTTTACAAAACGAAGGTATTTTAGTAATTCCACAATCGAGTGTATTTCGG
TAATTTTACAAATTGGGGGTATTTCGATAATTTTACAAATCG
Found at i:56917655 original size:80 final size:82
Alignment explanation
Indices: 56917363--56917702 Score: 354
Period size: 80 Copynumber: 4.2 Consensus size: 82
56917353 TTATAGTACA
* * * * * * *
56917363 AGGGTATTTC-GATAATTTTACAAATCAAGGATATTTTAGTAATTTTACAAATAGAGGGTGTTTT
1 AGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTC
* *
56917427 TGTAATTTTA-AAAATTG
65 AGTAATTTTACAAAATCG
* * * *
56917444 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAACGAAGGTATTTTA
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCA
* **
56917509 GTAA--TTCCACGATCG
66 GTAATTTTACAAAATCG
* * * *
56917524 AGTGTATTTCGGTAATTTTACAAATCGGGGGTATTTCAATAATTTTACAAATCGAAGGTATTTCA
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCA
56917589 GTAATTTTACAAAAT-G
66 GTAATTTTACAAAATCG
** * * * **
56917605 AGGGTATTTCAGTAATTCCAC-AATCGAGTGTATTTCGGTAATTTTACAAATTGGGGGTATTTC-
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCA
56917668 GATAATTTTAC-AAATCG
66 G-TAATTTTACAAAATCG
*
56917685 AGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
56917703 CTCTTTATTA
Statistics
Matches: 218, Mismatches: 35, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
79 7 0.03
80 128 0.59
81 76 0.35
82 7 0.03
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (82 bp):
AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCA
GTAATTTTACAAAATCG
Found at i:56917700 original size:27 final size:27
Alignment explanation
Indices: 56917363--56917702 Score: 357
Period size: 27 Copynumber: 12.7 Consensus size: 27
56917353 TTATAGTACA
*
56917363 AGGGTATTTC-GATAATTTTACAAATCA
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * *
56917390 AGGATATTTTAGTAATTTTACAAATAG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** * *
56917417 AGGGTGTTTTTGTAATTTTAAAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
56917444 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
56917471 AGGGTATTTCAGTAATTTTACAAAACG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * ** *
56917498 AAGGTATTTTAGTAATTCCAC-GATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
56917524 AGTGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
56917551 GGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
56917578 AAGGTATTTCAGTAATTTTACAAAAT-G
1 AGGGTATTTCAGTAATTTTAC-AAATCG
**
56917605 AGGGTATTTCAGTAATTCCAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
56917631 AGTGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
56917658 GGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
56917685 AGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
56917703 CTCTTTATTA
Statistics
Matches: 257, Mismatches: 49, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
25 3 0.01
26 37 0.14
27 211 0.82
28 6 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:56918023 original size:28 final size:28
Alignment explanation
Indices: 56917986--56918074 Score: 124
Period size: 28 Copynumber: 3.2 Consensus size: 28
56917976 TGGCCCCTTT
56917986 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
*
56918014 AGGCCCAATCTCGTTCACATGGCCTATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
* * * * *
56918042 AAGCCAAATCACATTCATATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
56918070 AGGCC
1 AGGCC
56918075 TAATTACTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.26, C:0.36, G:0.17, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCTCGTTCACATGGCCCATC
Found at i:56918953 original size:15 final size:15
Alignment explanation
Indices: 56918932--56918969 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
56918922 CCCATACTAA
*
56918932 AGGCCCAATACTTGT
1 AGGCCCAATACTTCT
*
56918947 TGGCCCAATACTTCT
1 AGGCCCAATACTTCT
56918962 AGGCCCAA
1 AGGCCCAA
56918970 ATTCGAGGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (15 bp):
AGGCCCAATACTTCT
Found at i:56920564 original size:50 final size:49
Alignment explanation
Indices: 56920361--56920633 Score: 234
Period size: 49 Copynumber: 5.8 Consensus size: 49
56920351 TCATTTGTGT
* * ** **
56920361 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAACC-ACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAAGATGA
* * *
56920407 GAGCCAGTATAAGACAATGTCTGGGACAT-GCATCAGCCTCGTG-AGGT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT--TGAAGATGA
*
56920455 -AGCCACTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTATG-AGATG-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-TGAAGATGA
* * * * *
56920499 TA-CCAGTGTATGACCATGTCAGGGACATGGCATCGGCACGGTT-ATG-TGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-C--TTGAAGATGA
*
56920548 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAAGATGA
*
56920597 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG
56920634 TACTTTACCC
Statistics
Matches: 183, Mismatches: 27, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
44 14 0.08
45 16 0.09
46 38 0.21
47 34 0.19
48 6 0.03
49 43 0.23
50 32 0.17
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAAGATGA
Found at i:56926033 original size:48 final size:47
Alignment explanation
Indices: 56925947--56926260 Score: 299
Period size: 48 Copynumber: 6.7 Consensus size: 47
56925937 TAGGGTATAA
56925947 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCACATAT-CG
56925997 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCCG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATAT-CG
* *
56926045 TGCTGATGCATGTCCCAGACATGTCTTACACTAG----CACATCAT-G
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACAT-ATCG
* *
56926088 TAGCCGATGCATGTCCCAGACATGTCTTACAGTGGCT-T-ACATCTCG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCG
* * * * * * * *
56926134 AGGCTGATGCATGTCCTAGACATGTTTTACACTAGCTCT--CGTCTCAA
1 -TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATC-G
* * *
56926181 TGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATA-AT-G
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCACATATCG
* *
56926228 TGGTCGATGCATGTCCTAGACATGTCTTACACT
1 T-GCCGATGCATGTCCCAGACATGTCTTACACT
56926261 AGCATACACA
Statistics
Matches: 223, Mismatches: 27, Indels: 32
0.79 0.10 0.11
Matches are distributed among these distances:
43 2 0.01
44 35 0.16
45 3 0.01
46 55 0.25
47 26 0.12
48 79 0.35
49 15 0.07
50 8 0.04
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCG
Found at i:56926156 original size:138 final size:141
Alignment explanation
Indices: 56925948--56926260 Score: 352
Period size: 138 Copynumber: 2.2 Consensus size: 141
56925938 AGGGTATAAT
*
56925948 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCCGTGCCGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCACATATCCGGGCCGATGCATGTCCC
* ** *
56926013 AGACATGTCTTACACTGGCTCTCACATATCCGTG-CTGATG-CATGTCCCAGACAT-GTCTTACA
64 AGACATGTCTTACACTAGCTCT--CATATCAATGTC-GATGCCATGTCCCAAACATGGTCTTACA
*
56926075 CTAG-CACATCATGTA
126 CTAGCCACATAATGTA
* * * *
56926090 GCCGATGCATGTCCCAGACATGTCTTACAGTGGCT-T-ACATCT-CGAGGCTGATGCATGTCCTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCCG-GGCCGATGCATGTCCCA
* * * *
56926152 GACATGTTTTACACTAGCTCTCGTCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTGG
65 GACATGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAG
* *
56926217 CTCTCATAATGTG
130 C-CACATAATGTA
* *
56926230 GTCGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
56926261 AGCATACACA
Statistics
Matches: 146, Mismatches: 19, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
136 10 0.07
137 16 0.11
138 49 0.34
139 1 0.01
140 49 0.34
141 14 0.10
142 7 0.05
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (141 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCCGGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGC
CACATAATGTA
Found at i:56926239 original size:94 final size:91
Alignment explanation
Indices: 56925998--56926264 Score: 303
Period size: 94 Copynumber: 2.9 Consensus size: 91
56925988 ACATATCCGT
* * *
56925998 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCCGTGCT-GATGCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-CGTGGTCGATGCATGTCCTA
*
56926062 GACATGTCTTACACTAGCACATCATGTA
64 GACATGTCTTACACTAGCACATCATCTA
* * *
56926090 GCCGATGCATGTCCCAGACATGTCTTACAGTGGCT-TACAT-CTCGAGG-CTGATGCATGTCCTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAATCGTGGTC-GATGCATGTCCTA
* * *
56926152 GACATGTTTTACACTAGCTC-TCGTCTCAA
64 GACATGTCTTACACTAGCACATCATCT--A
* *
56926181 TGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGATGCATGTCCT
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATCGTGGTCGATGCATGTCCT
56926245 AGACATGTCTTACACTAGCA
63 AGACATGTCTTACACTAGCA
56926265 TACACACATC
Statistics
Matches: 147, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
89 7 0.05
90 31 0.21
91 2 0.01
92 42 0.29
93 13 0.09
94 49 0.33
95 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (91 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATCGTGGTCGATGCATGTCCTAGA
CATGTCTTACACTAGCACATCATCTA
Found at i:56931429 original size:94 final size:93
Alignment explanation
Indices: 56931269--56931446 Score: 277
Period size: 94 Copynumber: 1.9 Consensus size: 93
56931259 CATAGGGTAT
* * ** *
56931269 AATGCCAATGCCATTTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGTCGATGCATGTCCT
1 AATGCCAATGCCATGTCCCAAACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCT
56931334 AGACATGTCTTACACTAGCTCTCGTCTC
66 AGACATGTCTTACACTAGCTCTCGTCTC
*
56931362 AATGCCAATGCCATGTCCCAAACATGGTCTTACACTGGC-TATCATAATGTGGCCGATGCATGTC
1 AATGCCAATGCCATGTCCCAAACAT-GTCTTACACTGGCTTA-CATAATGAGGCCGATGCATGTC
56931426 CTAGACATGTCTTACACTAGC
64 CTAGACATGTCTTACACTAGC
56931447 ACACACACAT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
93 25 0.32
94 52 0.68
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (93 bp):
AATGCCAATGCCATGTCCCAAACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCT
AGACATGTCTTACACTAGCTCTCGTCTC
Found at i:56944058 original size:91 final size:94
Alignment explanation
Indices: 56943902--56944135 Score: 242
Period size: 91 Copynumber: 2.5 Consensus size: 94
56943892 CATTAGGGTT
* * * ** ** *
56943902 ATATGCGATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCATCAATATGTAATTTCGTGTA
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTA
56943967 AGACCATAGT-TGGG-C-T-ATCGGCATCG
66 AGACCAT-GTCTGGGACATGATCGGCATCG
* * * *
56943993 ATATGTGATACCAAGTAAGACCATGTCTGGGACATGGCATTGGCATCAATCTACGATCCCATGTA
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTA
* *
56944058 AGACTATGTCTGGGACATGGCATTGGCATCG
66 AGACCATGTCTGGGACAT-G-ATCGGCATCG
* * * * *
56944089 ATAGGTGATCCCATGTAAGACCATATCCGGGATATGGCATTAGCATC
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
56944136 CTACCATGTG
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
90 2 0.02
91 63 0.54
92 1 0.01
93 1 0.01
96 49 0.42
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (94 bp):
ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTA
AGACCATGTCTGGGACATGATCGGCATCG
Found at i:56944067 original size:48 final size:48
Alignment explanation
Indices: 56943907--56944135 Score: 179
Period size: 48 Copynumber: 4.9 Consensus size: 48
56943897 GGGTTATATG
* *
56943907 CGATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCATCAATATGTA
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA-G-A
** * * *
56943957 --ATTTCGTGTAAGACCATAGT-TGGG-C-T---ATCGGCATCGATATG-
1 CGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCAATA-GA
* * * **
56943998 TGATACCAAGTAAGACCATGTCTGGGACATGGCATTGGCATCAATCTA
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATAGA
* * *
56944046 CGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCGATAGG
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATAGA
* * * * *
56944094 TGATCCCATGTAAGACCATATCCGGGATATGGCATTAGCATC
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
56944136 CTACCATGTG
Statistics
Matches: 140, Mismatches: 29, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
42 2 0.01
43 29 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 103 0.74
49 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (48 bp):
CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATAGA
Found at i:56947746 original size:44 final size:43
Alignment explanation
Indices: 56947684--56947768 Score: 134
Period size: 44 Copynumber: 2.0 Consensus size: 43
56947674 CCTTGTAGTC
*
56947684 AAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACCA
1 AAAGCTACATTCTTCACAAAATGGCCTTCACATAGCACCACCA
* *
56947727 AAAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGCACCAC
1 AAAGCTA-CATTCTTCACAAAATGGCCTTCACATAGCACCAC
56947769 ACTTGAGTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 7 0.18
44 31 0.82
ACGTcount: A:0.34, C:0.31, G:0.11, T:0.25
Consensus pattern (43 bp):
AAAGCTACATTCTTCACAAAATGGCCTTCACATAGCACCACCA
Found at i:56958063 original size:49 final size:50
Alignment explanation
Indices: 56957899--56958075 Score: 212
Period size: 51 Copynumber: 3.5 Consensus size: 50
56957889 AGATACCCGC
* * * * * *
56957899 TGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTTTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTA-ACCAAGCTATCTTCTTCACAAAG
* * * *
56957950 TGACGTTCACATAATACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTAACC-AAGCTATC-TTCTTCACAAAG
* *
56958002 TTGCCTTCACATAGTACCACACTTGTAACCAAGCTATC-TCTTCTCAAAG
1 TGGCCTTCACATAGTACCACACTTGTAACCAAGCTATCTTCTTCACAAAG
56958051 TGGCCTTCACATAGTACCACACTTG
1 TGGCCTTCACATAGTACCACACTTG
56958076 AGTCACTAGT
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
49 34 0.32
50 1 0.01
51 36 0.34
52 36 0.34
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (50 bp):
TGGCCTTCACATAGTACCACACTTGTAACCAAGCTATCTTCTTCACAAAG
Found at i:56960692 original size:15 final size:15
Alignment explanation
Indices: 56960669--56960698 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
56960659 TCAAAAATTC
56960669 TAATACAAAACATAT
1 TAATACAAAACATAT
*
56960684 TAATTCAAAACATAT
1 TAATACAAAACATAT
56960699 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:56971416 original size:31 final size:31
Alignment explanation
Indices: 56971381--56971442 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
56971371 GGGGACAACG
*
56971381 CTCTGTCCCAGGCCATGTTGAGAGTTTTGGA
1 CTCTGTCCCAGGCCATGTTAAGAGTTTTGGA
*
56971412 CTCTGTCCCAGGCCTTGTTAAGAGTTTTGGA
1 CTCTGTCCCAGGCCATGTTAAGAGTTTTGGA
56971443 AAGGGTGGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.16, C:0.23, G:0.27, T:0.34
Consensus pattern (31 bp):
CTCTGTCCCAGGCCATGTTAAGAGTTTTGGA
Found at i:56978234 original size:50 final size:50
Alignment explanation
Indices: 56978179--56978279 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
56978169 TTAGGGCGTA
56978179 TTTTATAAAAGTTTCCTATTTTAAAAATATCACGATAACGGAGCAAAGCT
1 TTTTATAAAAGTTTCCTATTTTAAAAATATCACGATAACGGAGCAAAGCT
*
56978229 TTTTATAAAAGTTTCCTATTTTAAAAATATCACGATAACTGAGCAAAGCT
1 TTTTATAAAAGTTTCCTATTTTAAAAATATCACGATAACGGAGCAAAGCT
56978279 T
1 T
56978280 CCGCAATGTA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.36
Consensus pattern (50 bp):
TTTTATAAAAGTTTCCTATTTTAAAAATATCACGATAACGGAGCAAAGCT
Found at i:56986802 original size:42 final size:42
Alignment explanation
Indices: 56986743--56986825 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
56986733 CAGATTAAAC
*
56986743 TAGTTTTTGCACTTTAGGAGCTTGAATATAAGCATTTTAACA
1 TAGTTTTTGCACTTTAGGAGCTTGAATATAAGAATTTTAACA
56986785 TAGTTTTTGCACTTTAGGAGCTTGAATATAAGAATTTTAAC
1 TAGTTTTTGCACTTTAGGAGCTTGAATATAAGAATTTTAAC
56986826 TACATTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (42 bp):
TAGTTTTTGCACTTTAGGAGCTTGAATATAAGAATTTTAACA
Found at i:56989715 original size:44 final size:44
Alignment explanation
Indices: 56989666--56989819 Score: 167
Period size: 43 Copynumber: 3.6 Consensus size: 44
56989656 TCGGGCCTTA
* *
56989666 GCCTAGCAAGCTTTAA-GCTGGTGAATAATATTATCGGGCTTCGG
1 GCCTAGCAAGCTATAATGCCGGTGAATAATA-TATCGGGCTTCGG
*
56989710 GCCTAGCAAGCTATAATGCCGGAGAGATAATAT-T-GGGCTTCGG
1 GCCTAGCAAGCTATAATGCCGGTGA-ATAATATATCGGGCTTCGG
* **
56989753 GCCTAGCAGGCTATAATGCCGGTG-A-AATGATATCGGGCTTCAA
1 GCCTAGCAAGCTATAATGCCGGTGAATAAT-ATATCGGGCTTCGG
* *
56989796 GCCTAGCAGGC-AAAATGCCGGTGA
1 GCCTAGCAAGCTATAATGCCGGTGA
56989820 TTTGATAAAA
Statistics
Matches: 96, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
40 3 0.03
41 3 0.03
42 12 0.12
43 49 0.51
44 16 0.17
45 7 0.07
46 6 0.06
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
GCCTAGCAAGCTATAATGCCGGTGAATAATATATCGGGCTTCGG
Found at i:56990664 original size:163 final size:163
Alignment explanation
Indices: 56990393--56990717 Score: 623
Period size: 163 Copynumber: 2.0 Consensus size: 163
56990383 GCAGTAACGT
56990393 GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
1 GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
**
56990458 TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTTCAAGCAAAAGAATTGCTGATAATGAGATA
66 TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGAAAGCAAAAGAATTGCTGATAATGAGATA
56990523 TTTGAAGTGGCGGGGGACAAAGTCAAATGACTA
131 TTTGAAGTGGCGGGGGACAAAGTCAAATGACTA
56990556 GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
1 GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
56990621 TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGAAAGCAAAAGAATTGCTGATAATGAGATA
66 TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGAAAGCAAAAGAATTGCTGATAATGAGATA
*
56990686 TTTGAAGTGGCGGGGGACAGAGTCAAATGACT
131 TTTGAAGTGGCGGGGGACAAAGTCAAATGACT
56990718 TCGGGGTCCC
Statistics
Matches: 159, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 159 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (163 bp):
GATTTTGGAAAATCACCATAAATTGTGGGAGTTGAATTAGAAGCTGAATAAATAATATAATTAAA
TCTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGAAAGCAAAAGAATTGCTGATAATGAGATA
TTTGAAGTGGCGGGGGACAAAGTCAAATGACTA
Found at i:57009426 original size:13 final size:13
Alignment explanation
Indices: 57009408--57009432 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57009398 GTGTGGGTGC
57009408 GCACGGCCGTGTT
1 GCACGGCCGTGTT
57009421 GCACGGCCGTGT
1 GCACGGCCGTGT
57009433 CTGTCTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.40, T:0.20
Consensus pattern (13 bp):
GCACGGCCGTGTT
Found at i:57030563 original size:48 final size:48
Alignment explanation
Indices: 57030369--57030562 Score: 239
Period size: 48 Copynumber: 4.0 Consensus size: 48
57030359 TACATGAATC
** * *
57030369 CACATATCATCGTCGATTCCATGTCCCAGACATGGTCTTAGACTA-GCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACAC-AGGCA
* * * * *
57030417 CACATATCATCGCCGATTCCATGTCCCAGGCATGGTCTTACGCTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* *
57030465 CACATATCAAT-ATCGATGCCATGTCCCAGATATGGTCTTACACAGGCA
1 CACATATC-ATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* *
57030513 CATATATCATCACCAATGCCATGTCCCAGACATGGTCTTACACAGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
57030561 CA
1 CA
57030563 TTTAGCATGG
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.02
48 123 0.97
49 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (48 bp):
CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
Found at i:57042520 original size:239 final size:239
Alignment explanation
Indices: 57042101--57042578 Score: 956
Period size: 239 Copynumber: 2.0 Consensus size: 239
57042091 GTAAAAAGTG
57042101 CAAAAGTTGAGTTCTACATGTTAGAGGTGTCTAATTGTTATGAAATTTTAAATTGGAAGCCTTTT
1 CAAAAGTTGAGTTCTACATGTTAGAGGTGTCTAATTGTTATGAAATTTTAAATTGGAAGCCTTTT
57042166 AATGGTAATTAGACCATTGGATAATTTGTTGGACAAAAATGGACATGAAATGGGTGAAATAGAAT
66 AATGGTAATTAGACCATTGGATAATTTGTTGGACAAAAATGGACATGAAATGGGTGAAATAGAAT
57042231 ATTTTTAAGTTAGGGGCATTTTGGTAATCTAGTAATTAAAATGAAGTAAAAACAAAATTAAAAGC
131 ATTTTTAAGTTAGGGGCATTTTGGTAATCTAGTAATTAAAATGAAGTAAAAACAAAATTAAAAGC
57042296 CAATTTTTGTCCATCTTCTACCCCATGCCTGAAACGTGCATGGA
196 CAATTTTTGTCCATCTTCTACCCCATGCCTGAAACGTGCATGGA
57042340 CAAAAGTTGAGTTCTACATGTTAGAGGTGTCTAATTGTTATGAAATTTTAAATTGGAAGCCTTTT
1 CAAAAGTTGAGTTCTACATGTTAGAGGTGTCTAATTGTTATGAAATTTTAAATTGGAAGCCTTTT
57042405 AATGGTAATTAGACCATTGGATAATTTGTTGGACAAAAATGGACATGAAATGGGTGAAATAGAAT
66 AATGGTAATTAGACCATTGGATAATTTGTTGGACAAAAATGGACATGAAATGGGTGAAATAGAAT
57042470 ATTTTTAAGTTAGGGGCATTTTGGTAATCTAGTAATTAAAATGAAGTAAAAACAAAATTAAAAGC
131 ATTTTTAAGTTAGGGGCATTTTGGTAATCTAGTAATTAAAATGAAGTAAAAACAAAATTAAAAGC
57042535 CAATTTTTGTCCATCTTCTACCCCATGCCTGAAACGTGCATGGA
196 CAATTTTTGTCCATCTTCTACCCCATGCCTGAAACGTGCATGGA
57042579 GAAGACATAG
Statistics
Matches: 239, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
239 239 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (239 bp):
CAAAAGTTGAGTTCTACATGTTAGAGGTGTCTAATTGTTATGAAATTTTAAATTGGAAGCCTTTT
AATGGTAATTAGACCATTGGATAATTTGTTGGACAAAAATGGACATGAAATGGGTGAAATAGAAT
ATTTTTAAGTTAGGGGCATTTTGGTAATCTAGTAATTAAAATGAAGTAAAAACAAAATTAAAAGC
CAATTTTTGTCCATCTTCTACCCCATGCCTGAAACGTGCATGGA
Found at i:57043762 original size:50 final size:50
Alignment explanation
Indices: 57043634--57044035 Score: 412
Period size: 50 Copynumber: 8.0 Consensus size: 50
57043624 GAATAATTTG
* * * * ** *
57043634 TTGTGAGGACACATGTGTAGTACTATGTACAGGCTACTATGTGTTTAAAATGG
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GA
*
57043687 TT-TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * * *
57043736 TTGTTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTGTGCGTACCCGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * * *
57043786 TAGCTTCGATCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 TTG-TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * * *
57043837 TTGTTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTGTGCGTACCCGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * * *
57043887 TAGCTTCGATCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTATCCA-A
1 TTG-TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGA
* * ** *
57043938 TGGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACGACATATACCAGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * *
57043988 TTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
57044036 TAGAGTTTCA
Statistics
Matches: 283, Mismatches: 61, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
49 6 0.02
50 161 0.57
51 77 0.27
52 37 0.13
53 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
Found at i:57043821 original size:101 final size:101
Alignment explanation
Indices: 57043694--57043974 Score: 510
Period size: 101 Copynumber: 2.8 Consensus size: 101
57043684 TGGTTTTAGG
*
57043694 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
57043759 TAAGTGTAGGCTACTGTGCGTACCCGATAGCTTCGA
66 TAAGTGTAGGCTACTGTGCGTACCCGATAGCTTCGA
57043795 TCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
57043860 TAAGTGTAGGCTACTGTGCGTACCCGATAGCTTCGA
66 TAAGTGTAGGCTACTGTGCGTACCCGATAGCTTCGA
* *
57043896 TCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTATCCA-ATGGTTAGGTCACATGTGTAGTA
1 TCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATTGTTAGGTCGCATGTGTAGTA
*
57043960 CTAAGTGCAGGCTAC
65 CTAAGTGTAGGCTAC
57043975 GACATATACC
Statistics
Matches: 175, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
101 172 0.98
102 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
TAAGTGTAGGCTACTGTGCGTACCCGATAGCTTCGA
Found at i:57043959 original size:151 final size:151
Alignment explanation
Indices: 57043643--57044035 Score: 448
Period size: 151 Copynumber: 2.6 Consensus size: 151
57043633 GTTGTGAGGA
* * ** * * *
57043643 CACATGTGTAGTACTATGTACAGGCTACTATGTGTTTAAAATGGTT-TTAGGTCACGTGTGTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGTCGCATGTGTAGT
* * * * * *
57043707 ACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGTAGGCTA
63 ACTAAGTGCAGGCTACTATGCGTACCAGATAGTTAGATCACATGTCTAGTACTAAGTGCAGGCTA
* * *
57043772 CTGTGCGTACCCGATAGCTTCGAT
128 CTATGCGTACCCAATAGCTTAGAT
* *
57043796 CACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACT
* * * * *
57043861 AAGTGTAGGCTACTGTGCGTACCCGATAGCTTCGATCACGTGTCTAGTACTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGCGTACCAGATAG-TTAGATCACATGTCTAGTACTAAGTGCAGGCTACT
* * * *
57043926 ATGTGTATCCAAT-GGTTAGGT
130 ATGCGTACCCAATAGCTTAGAT
* ** *
57043947 CACATGTGTAGTACTAAGTGCAGGCTACGACATATACCAGATTGTTAGGTCGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACT
*
57044012 AAGTGCAAGCTACTATGCGTACCA
66 AAGTGCAGGCTACTATGCGTACCA
57044036 TAGAGTTTCA
Statistics
Matches: 201, Mismatches: 37, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
150 3 0.01
151 130 0.65
152 38 0.19
153 30 0.15
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (151 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAGTTAGATCACATGTCTAGTACTAAGTGCAGGCTACTA
TGCGTACCCAATAGCTTAGAT
Found at i:57049862 original size:28 final size:27
Alignment explanation
Indices: 57049795--57049862 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 27
57049785 TATGACAACA
*
57049795 TATAGTCCACTAGGACACTAAACATGG
1 TATAGTCCACTAGGACACTAAACAAGG
* ** *
57049822 TGTAGTCTGCTAGGACATTTAAACACAGG
1 TATAGTCCACTAGGACA-CTAAACA-AGG
57049851 -ATAGTCCACTAG
1 TATAGTCCACTAG
57049863 AACAATAATT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
27 14 0.45
28 15 0.48
29 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
TATAGTCCACTAGGACACTAAACAAGG
Found at i:57050947 original size:31 final size:29
Alignment explanation
Indices: 57050885--57050947 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
57050875 TTTCCGAGCC
*
57050885 TAGGGGAAAATCATAATTTTGCAAAGGTT
1 TAGGGGAAAATCATAATTTTCCAAAGGTT
** *
57050914 TAGGGGTAAAATTGTAATTTTTCCAAAGTTT
1 TAGGGG-AAAATCATAA-TTTTCCAAAGGTT
57050945 TAG
1 TAG
57050948 TTAGGGAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 6 0.21
30 8 0.29
31 14 0.50
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (29 bp):
TAGGGGAAAATCATAATTTTCCAAAGGTT
Found at i:57051762 original size:46 final size:47
Alignment explanation
Indices: 57051702--57051822 Score: 190
Period size: 46 Copynumber: 2.6 Consensus size: 47
57051692 GCATTGGCAT
57051702 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* * *
57051749 T-AGACAAGGATACCATGTAAGACCATATTTGGAATATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
57051795 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
57051823 CCAAGGCATG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 43 0.64
47 24 0.36
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:57051929 original size:55 final size:54
Alignment explanation
Indices: 57051801--57051997 Score: 263
Period size: 55 Copynumber: 3.6 Consensus size: 54
57051791 TTGGTAAGAT
* * * *
57051801 AAGGATATCATGTAAGACCATGCCAAGGCATGGCACTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
57051855 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* *
57051910 AAAGG-TACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
57051963 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
57051998 ATGGTAAGTT
Statistics
Matches: 127, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
52 4 0.03
53 34 0.27
54 41 0.32
55 44 0.35
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:57059314 original size:57 final size:58
Alignment explanation
Indices: 57059246--57059354 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
57059236 GCCCACTGAT
* *
57059246 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTACCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTACCTCAATTAC
* * * *
57059303 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTACCTC
57059355 TAATCATTCG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 24 0.53
58 21 0.47
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTACCTCAATTAC
Found at i:57059610 original size:40 final size:40
Alignment explanation
Indices: 57059566--57059917 Score: 587
Period size: 40 Copynumber: 8.8 Consensus size: 40
57059556 CCAGCATGAT
* * *
57059566 TGCTCTTCGGGACCTAGCCCGGATATAACACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
57059606 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
57059646 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
**
57059686 TGCTCCTCGAAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
57059726 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
**
57059766 TGCTCCTCGAAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
57059806 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
57059846 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
57059886 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
57059918 CTCAATTTTC
Statistics
Matches: 292, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 292 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:57062918 original size:85 final size:85
Alignment explanation
Indices: 57062789--57063137 Score: 689
Period size: 85 Copynumber: 4.1 Consensus size: 85
57062779 TATTTTATTG
*
57062789 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
57062854 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
57062874 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
57062939 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
57062959 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
57063024 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
57063044 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
57063109 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
57063129 CCCATGCTC
1 CCCATGCTC
57063138 ATGGCCGGCC
Statistics
Matches: 263, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 263 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:57064499 original size:18 final size:18
Alignment explanation
Indices: 57064448--57064500 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
57064438 GGCTAAGGAC
57064448 TAAATAGGAAATCAAAATTAT
1 TAAATA-GAAAT--AAATTAT
*
57064469 TAAA-AGATGATAAATTAT
1 TAAATAGA-AATAAATTAT
57064487 TAAATAGAAATAAA
1 TAAATAGAAATAAA
57064501 AATCATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 16 0.57
19 5 0.18
20 3 0.11
21 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.28
Consensus pattern (18 bp):
TAAATAGAAATAAATTAT
Found at i:57066934 original size:42 final size:42
Alignment explanation
Indices: 57066887--57067077 Score: 231
Period size: 42 Copynumber: 4.5 Consensus size: 42
57066877 TGAGCTCACA
* *
57066887 GGCAGAGACACAGGCATGTGTCTCAGCCGTGTGCACCACACG
1 GGCAGAGACACAGGCGTGTGTCTCAGCCGTGTGTACCACACG
* *
57066929 GGCAGAGACACGGGCGTGTGTCTCAGCCGTGTGTACCACACC
1 GGCAGAGACACAGGCGTGTGTCTCAGCCGTGTGTACCACACG
* * * **
57066971 GGTAGAGGCACGGGCGTGTGTCTCAGTTGTGTGTACCACACG
1 GGCAGAGACACAGGCGTGTGTCTCAGCCGTGTGTACCACACG
* * * *
57067013 GGCAGAGACACAGGCGTGTATCTCAACCGTGTATACCACACA
1 GGCAGAGACACAGGCGTGTGTCTCAGCCGTGTGTACCACACG
* *
57067055 GTCTG-GAACACAGGCGTGTGTCT
1 GGCAGAG-ACACAGGCGTGTGTCT
57067078 TGGTCGTGTG
Statistics
Matches: 127, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
41 1 0.01
42 126 0.99
ACGTcount: A:0.22, C:0.27, G:0.32, T:0.19
Consensus pattern (42 bp):
GGCAGAGACACAGGCGTGTGTCTCAGCCGTGTGTACCACACG
Found at i:57070213 original size:53 final size:52
Alignment explanation
Indices: 57070133--57070239 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 52
57070123 CACAAATCAA
* *
57070133 TCCACACATCAACCTTGTAGGGAAAATTATGCACATACCAAAATACCAAAAC
1 TCCACACATCAACATTATAGGGAAAATTATGCACATACCAAAATACCAAAAC
57070185 NTCCACACATCAACATTATAGGGAAAATTATGCACATACCAAAATACCAAAAC
1 -TCCACACATCAACATTATAGGGAAAATTATGCACATACCAAAATACCAAAAC
57070238 TC
1 TC
57070240 AAGCCAAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
52 2 0.04
53 50 0.96
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.20
Consensus pattern (52 bp):
TCCACACATCAACATTATAGGGAAAATTATGCACATACCAAAATACCAAAAC
Found at i:57072226 original size:55 final size:54
Alignment explanation
Indices: 57072133--57072239 Score: 133
Period size: 55 Copynumber: 2.0 Consensus size: 54
57072123 CTACTTTTCC
* * * *
57072133 TGTAACACCCTTAACCCGTATCTGTCGTAGGAATAGGGTTTCGAAGCATTACCGG
1 TGTAACACCCTTAACCCGTATCTGACGCAGGAACAGGG-TACGAAGCATTACCGG
* * * *
57072188 TGTAACACCCTTTACCCGTATTTGACGCCGGAACAGGGTACGAGGCATTACC
1 TGTAACACCCTTAACCCGTATCTGACGCAGGAACAGGGTACGAAGCATTACC
57072240 AGACTTAAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
54 12 0.27
55 32 0.73
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (54 bp):
TGTAACACCCTTAACCCGTATCTGACGCAGGAACAGGGTACGAAGCATTACCGG
Found at i:57074212 original size:27 final size:28
Alignment explanation
Indices: 57074182--57074238 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
57074172 ATTTTTGATG
57074182 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
57074209 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
57074238 A
1 A
57074239 TTTAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:57074768 original size:42 final size:43
Alignment explanation
Indices: 57074643--57074802 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
57074633 GTTGGTATTG
* *
57074643 ATCTGAATTATCGTGTAAGACCTTGTCTGGGACACAGGCATC-A
1 ATCTG-ATTTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
* * ** *
57074686 ATTTGAAATTTACGTGTAAGACCAT-TCTGGGACATTGGCATCGT
1 ATCTG--ATTTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
* * *
57074730 ATCTG-TTTTCGTATAAGACCCTGTCTGGGACAGAGGCATCG-
1 ATCTGATTTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
* * * *
57074771 ATACTGAATTACATGTAAGACCACGTCTGGGA
1 AT-CTGATTTTCGTGTAAGACCATGTCTGGGA
57074803 TGTTGGCATT
Statistics
Matches: 93, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
41 16 0.17
42 19 0.20
43 38 0.41
44 20 0.22
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
ATCTGATTTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
Found at i:57074801 original size:85 final size:85
Alignment explanation
Indices: 57074653--57074811 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
57074643 ATCTGAATTA
* * * * *
57074653 TCGTGTAAGACCTTGTCTGGGACACAGGCATCAATTTGAAATTTACGTGTAAGACCATTCTGGGA
1 TCGTATAAGACCCTGTCTGGGACACAGGCATCAATCTGAAATTTACATGTAAGACCAGTCTGGGA
57074718 CATTGGCATCGTATCTGTTT
66 CATTGGCATCGTATCTGTTT
* *
57074738 TCGTATAAGACCCTGTCTGGGACAGAGGCATCGATACTG-AA-TTACATGTAAGACCACGTCTGG
1 TCGTATAAGACCCTGTCTGGGACACAGGCATCAAT-CTGAAATTTACATGTAAGACCA-GTCTGG
**
57074801 GATGTTGGCAT
64 GACATTGGCAT
57074812 TGTACTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 14 0.22
85 47 0.75
86 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (85 bp):
TCGTATAAGACCCTGTCTGGGACACAGGCATCAATCTGAAATTTACATGTAAGACCAGTCTGGGA
CATTGGCATCGTATCTGTTT
Found at i:57076458 original size:40 final size:40
Alignment explanation
Indices: 57076405--57076554 Score: 255
Period size: 40 Copynumber: 3.8 Consensus size: 40
57076395 GGATTTAGCT
**
57076405 GGATATAACAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
*
57076445 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
57076485 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
* *
57076525 GGATATAGTCACTAGCACAAATGCCTTCGG
1 GGATATAGTAACTCGCACAAATGCCTTCGG
57076555 ATCTTAGTCC
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
Found at i:57076561 original size:80 final size:80
Alignment explanation
Indices: 57076389--57076566 Score: 272
Period size: 80 Copynumber: 2.2 Consensus size: 80
57076379 AACCCAAGTA
*
57076389 CCTTCGGGAT-TTAGCTGGATATAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGATCTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
*
57076453 TAACTCGCACAAATG
66 TAACTAGCACAAATG
**
57076468 CCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
1 CCTTCGGGATCTTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
*
57076532 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
57076548 CCTTC-GGATCTTAGTCCGG
1 CCTTCGGGATCTTAG-CCGG
57076567 TTATCATCCG
Statistics
Matches: 90, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
79 16 0.18
80 74 0.82
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGATCTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
TAACTAGCACAAATG
Found at i:57084406 original size:40 final size:40
Alignment explanation
Indices: 57084346--57084530 Score: 309
Period size: 40 Copynumber: 4.7 Consensus size: 40
57084336 AACCCAAGTA
* *
57084346 CCTTCGGGA-TTTACCTGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAACCTGGATATAGTAACTCGCACAAATG
57084385 CCTTCGGGACTTAACCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCTGGATATAGTAACTCGCACAAATG
* *
57084425 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCTGGATATAGTAACTCGCACAAATG
* *
57084465 CCTTCGGGACTGAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCTGGATATAGTAACTCGCACAAATG
57084505 CCTTCGGGACTTAACCTGGATATAGT
1 CCTTCGGGACTTAACCTGGATATAGT
57084531 CACTAGCCGG
Statistics
Matches: 137, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 9 0.07
40 128 0.93
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAACCTGGATATAGTAACTCGCACAAATG
Found at i:57101832 original size:47 final size:45
Alignment explanation
Indices: 57101711--57101833 Score: 126
Period size: 47 Copynumber: 2.6 Consensus size: 45
57101701 TCACATGTGT
57101711 GTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGA
1 GTGCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-CATTATGA
* * **
57101757 GAGCCAGTGTAAGACCATGTCTAAGACATGGCA-CTGG-CATTGAGATGA
1 GTGCTAGTGTAAGA-CATGTCTGGGACATGGCATC-GGCCATT---ATGA
57101805 GTGCTAGTGTAAGACATGTCTGGGACATG
1 GTGCTAGTGTAAGACATGTCTGGGACATG
57101834 TTTTGGCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
45 4 0.06
46 12 0.19
47 26 0.41
48 21 0.33
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCATTATGA
Found at i:57101886 original size:46 final size:46
Alignment explanation
Indices: 57101716--57101886 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
57101706 TGTGTGTGCT
* * *
57101716 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGA-GATGAGAGCC
** * * * * *
57101762 AGTGTAAGACCATGTCTAAGACATGGCACTGGCATTGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGATGAGAGCC
**
57101810 AGTGTAAGACATGTCTGGGACATGTTTTGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATG-AGAGCC
*
57101856 AGTATAAGACATGTCTGGGACATGCATTGGC
1 AGTGTAAGACATGTCTGGGACATGCATTGGC
57101887 TATAAGAGGT
Statistics
Matches: 99, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 51 0.52
47 25 0.25
48 22 0.22
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGAGAGCC
Found at i:57101955 original size:140 final size:141
Alignment explanation
Indices: 57101720--57101974 Score: 306
Period size: 138 Copynumber: 1.8 Consensus size: 141
57101710 TGTGCTAGTG
* *
57101720 TAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAAGACA
1 TAAGACATGTCTGGGACATGCATCGGCCACATTAAGAGAGCCAGTGTAAGACCATATCTAAGACA
* ** *
57101785 TGGCACTGGCATTGAGATGAGTGCTAGTGTAAGA-CATG-TCTGGGACATGTTTTGGCCTCGAGA
66 TGGCACTGACACAGAGATGAGAGCTAGTGTAAGACCATGTTC-GGGACATGTTTTGGCCTCGAGA
57101848 TGTAAGCCAGTA
130 TGTAAGCCAGTA
* * * * *
57101860 TAAGACATGTCTGGGACATGCATTGG-C-TA-TAAGAGGTGTCAGTGTAAGACCATATCTAGGAC
1 TAAGACATGTCTGGGACATGCATCGGCCACATTAAGA-GAGCCAGTGTAAGACCATATCTAAGAC
* *
57101922 ATGGCA-TCGACACAGATATGCTAGAGCTTGTGTAAGACCATGTTCGGGACATG
65 ATGGCACT-GACACAGAGATG--AGAGCTAGTGTAAGACCATGTTCGGGACATG
57101975 GCATCGACAC
Statistics
Matches: 96, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
137 5 0.05
138 38 0.40
139 1 0.01
140 38 0.40
141 12 0.12
142 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (141 bp):
TAAGACATGTCTGGGACATGCATCGGCCACATTAAGAGAGCCAGTGTAAGACCATATCTAAGACA
TGGCACTGACACAGAGATGAGAGCTAGTGTAAGACCATGTTCGGGACATGTTTTGGCCTCGAGAT
GTAAGCCAGTA
Found at i:57111712 original size:12 final size:12
Alignment explanation
Indices: 57111695--57111719 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57111685 CCACACACGC
57111695 CCGTGTACTAGG
1 CCGTGTACTAGG
57111707 CCGTGTACTAGG
1 CCGTGTACTAGG
57111719 C
1 C
57111720 AGTGCCAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (12 bp):
CCGTGTACTAGG
Found at i:57115340 original size:27 final size:28
Alignment explanation
Indices: 57115310--57115375 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 28
57115300 TTACCTAGGA
*
57115310 CCCCTAAT-TGATAAAATGACTGTTATG
1 CCCCTAATGTGATAAAATGACTATTATG
* * *
57115337 CCCCT-ATGTGGTAAAATGATTATTTTG
1 CCCCTAATGTGATAAAATGACTATTATG
57115364 CCCCT-ATGTGAT
1 CCCCTAATGTGAT
57115376 GTATGATTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 2 0.06
27 31 0.94
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (28 bp):
CCCCTAATGTGATAAAATGACTATTATG
Found at i:57117377 original size:43 final size:43
Alignment explanation
Indices: 57117329--57117425 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
57117319 GTCCAAGGCA
*
57117329 TGGTCTTACATGTAATCACAT-ATCGATGCC-ACTATCCCAAACAG
1 TGGTCTTACACGTAATCACATAAT-GATGCCAAC-ATCCCAAAC-G
*
57117373 -GGTCTTACACGTAATCACATAATGATGCCAACATCCCAGACG
1 TGGTCTTACACGTAATCACATAATGATGCCAACATCCCAAACG
57117415 TGGTCTTACAC
1 TGGTCTTACAC
57117426 AAATACACAT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
42 1 0.02
43 43 0.90
44 4 0.08
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGTAATCACATAATGATGCCAACATCCCAAACG
Found at i:57131880 original size:20 final size:20
Alignment explanation
Indices: 57131844--57131881 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
57131834 GAGCATAGGA
*
57131844 GAGCCAAAGGAGCCAAAAAC
1 GAGCCAAAGGAGACAAAAAC
57131864 GAGCCAAAAGG-GACAAAA
1 GAGCC-AAAGGAGACAAAA
57131882 CGGACCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.53, C:0.21, G:0.26, T:0.00
Consensus pattern (20 bp):
GAGCCAAAGGAGACAAAAAC
Found at i:57133747 original size:47 final size:47
Alignment explanation
Indices: 57133696--57133788 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
57133686 TCGACTTCCA
* *
57133696 AAAATCCTGAGTCCGATAGCT-GACGAGCCAAAATCTATAAAACAGAC
1 AAAATCCCGAGTCCGATAGCTGGA-GAACCAAAATCTATAAAACAGAC
57133743 AAAATCCCGAGTCCGATAGCTGGAGAACCAAAATCTATAAAACAGA
1 AAAATCCCGAGTCCGATAGCTGGAGAACCAAAATCTATAAAACAGA
57133789 GGATCAAAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 41 0.95
48 2 0.05
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.16
Consensus pattern (47 bp):
AAAATCCCGAGTCCGATAGCTGGAGAACCAAAATCTATAAAACAGAC
Found at i:57134294 original size:79 final size:82
Alignment explanation
Indices: 57134183--57134367 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
57134173 GCTACTCGTT
* * *
57134183 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCC
* *
57134246 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
57134263 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCG
* *
57134326 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
57134343 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57134368 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:57134367 original size:40 final size:41
Alignment explanation
Indices: 57134183--57134367 Score: 195
Period size: 40 Copynumber: 4.6 Consensus size: 41
57134173 GCTACTCGTT
* * *
57134183 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * * *
57134223 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* *
57134263 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTAGCA
* * *
57134302 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
57134343 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57134368 CATCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 75 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:57134790 original size:34 final size:34
Alignment explanation
Indices: 57134747--57134814 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
57134737 TAAAGTCACA
*
57134747 TATGTACGGAATCATGATTCAAACTCAACATTTT
1 TATGTACGGAATCATGAATCAAACTCAACATTTT
57134781 TATGTACGGAATCATGAATCAAACTCAACATTTT
1 TATGTACGGAATCATGAATCAAACTCAACATTTT
57134815 AGCTAATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (34 bp):
TATGTACGGAATCATGAATCAAACTCAACATTTT
Found at i:57135646 original size:28 final size:27
Alignment explanation
Indices: 57135613--57135704 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 27
57135603 TTATTTTATG
57135613 CCCATGCTCCTTATTTTATTTTTTTCCA
1 CCCATGCT-CTTATTTTATTTTTTTCCA
* * * *
57135641 CCCATGATTATTCCTTTTCATTATTTTATGC-
1 CCCATG-CTCTT-ATTTT-ATT-TTTT-TCCA
*
57135672 CCCATGCTCTTATTTTATTGTTTTCCA
1 CCCATGCTCTTATTTTATTTTTTTCCA
57135699 CCCATG
1 CCCATG
57135705 ATGCACCAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 13
0.69 0.13 0.18
Matches are distributed among these distances:
26 2 0.04
27 9 0.18
28 11 0.22
29 9 0.18
30 6 0.12
31 10 0.20
32 2 0.04
ACGTcount: A:0.16, C:0.27, G:0.07, T:0.50
Consensus pattern (27 bp):
CCCATGCTCTTATTTTATTTTTTTCCA
Found at i:57135663 original size:58 final size:58
Alignment explanation
Indices: 57135591--57135706 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 58
57135581 TTTTTCATCA
*
57135591 TATTCCCTTTCATTATTTTATG-CCCATGCTCCTTATTTTATTTTTTTCCACCCATGAT
1 TATTCCCTTTCATTATTTTATGCCCCATGCT-CTTATTTTATTGTTTTCCACCCATGAT
*
57135649 TATTCCTTTTCATTATTTTATGCCCCATGCTCTTATTTTATTGTTTTCCACCCATGAT
1 TATTCCCTTTCATTATTTTATGCCCCATGCTCTTATTTTATTGTTTTCCACCCATGAT
57135707 GCACCAACAC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
58 47 0.85
59 8 0.15
ACGTcount: A:0.17, C:0.25, G:0.06, T:0.52
Consensus pattern (58 bp):
TATTCCCTTTCATTATTTTATGCCCCATGCTCTTATTTTATTGTTTTCCACCCATGAT
Found at i:57136483 original size:50 final size:50
Alignment explanation
Indices: 57136356--57136502 Score: 230
Period size: 50 Copynumber: 3.0 Consensus size: 50
57136346 CTGGACCAAC
*
57136356 TCGTTCGGAGATTTCGTACGGCCCAATGAATCTCGGACTCAACTTGCCC-
1 TCGTTCGGAGATTTCGTACGGCCCAATGAATCTCGGGCTCAACTTGCCCT
* **
57136405 T--TACGGCCA-TTCGTACGGCCCAATGAATCTCGGGCTCAACTTGCCCT
1 TCGTTCGGAGATTTCGTACGGCCCAATGAATCTCGGGCTCAACTTGCCCT
57136452 TCGTTCGGAGATTTCGTACGGCCCAATGAATCTCGGGCTCAACTTGCCCT
1 TCGTTCGGAGATTTCGTACGGCCCAATGAATCTCGGGCTCAACTTGCCCT
57136502 T
1 T
57136503 ACGGCCAAAT
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
46 36 0.41
47 6 0.07
49 6 0.07
50 39 0.45
ACGTcount: A:0.19, C:0.31, G:0.22, T:0.27
Consensus pattern (50 bp):
TCGTTCGGAGATTTCGTACGGCCCAATGAATCTCGGGCTCAACTTGCCCT
Found at i:57137746 original size:73 final size:73
Alignment explanation
Indices: 57137627--57137770 Score: 270
Period size: 73 Copynumber: 2.0 Consensus size: 73
57137617 ACAGACAAGC
57137627 GCACATTCATCGCTCGTAAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCAAATTAGCC
1 GCACATTCATCGCTCGTAAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCAAATTAGCC
57137692 TTTCCCAT
66 TTTCCCAT
* *
57137700 GCACATTCATTGCTCGTAAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCC
1 GCACATTCATCGCTCGTAAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCAAATTAGCC
57137765 TTTCCC
66 TTTCCC
57137771 GGGTGATAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.25
Consensus pattern (73 bp):
GCACATTCATCGCTCGTAAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCAAATTAGCC
TTTCCCAT
Found at i:57142391 original size:40 final size:39
Alignment explanation
Indices: 57142354--57142445 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
57142344 GCTACTCGTT
*
57142354 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
57142394 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
57142433 CAAATGCCTTCGG
1 CAAATGCCTTCGG
57142446 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:57142425 original size:39 final size:40
Alignment explanation
Indices: 57142335--57142498 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
57142325 CGGAATTTAA
** *
57142335 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
57142375 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57142414 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57142454 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57142494 CCGGA
1 CCGGA
57142499 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57150197 original size:69 final size:70
Alignment explanation
Indices: 57150065--57150197 Score: 196
Period size: 69 Copynumber: 1.9 Consensus size: 70
57150055 TAGTTTATTA
* * * * * *
57150065 CTAATTAATTTGCTGCTGTAATGCTGTAAGTTATTGGCGGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCGGTCCAAATTAGGACAAAATCATGGTA
57150130 CTTAG
66 CTTAG
*
57150135 CTAATTAATATGCTACTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCGGTCCAAATTAGGACAAAATCATGGT
57150198 GTTATGTGTT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
69 34 0.61
70 22 0.39
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCGGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:57151007 original size:39 final size:39
Alignment explanation
Indices: 57150955--57151343 Score: 366
Period size: 39 Copynumber: 9.9 Consensus size: 39
57150945 ATTTGATGTA
* *
57150955 TATCCGGACTTAAGGTCCACAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
57150994 TATCCGGACTTAAGGTCTGCAAGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* *
57151033 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
57151072 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGTTGGAATTA
1 TATCCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAATTG
* * * *
57151112 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTAGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* *
57151152 TATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
57151191 TATCCGGGCTTAAAGACCCACAAGCTTCGTGCTAGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
57151231 TATCTGGGCTTAAAGACCCACAGGCTTCGTGCTAGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
57151271 TATCCGGACTTAAGATTCGTAGGCTTTGTGCTGGTACTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
57151310 TATTCGGACTAAAGGTCTGCAGGCTTCGTACTGG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGG
57151344 TACTATATCC
Statistics
Matches: 295, Mismatches: 51, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
39 161 0.55
40 133 0.45
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
Found at i:57151172 original size:79 final size:79
Alignment explanation
Indices: 57150977--57151283 Score: 348
Period size: 79 Copynumber: 3.9 Consensus size: 79
57150967 AGGTCCACAG
* * * *
57150977 GCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAAGCTTCATGCTGGAATTGTATCCGGAC
1 GCTTCGTGCTAGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTGTATCCGGGC
**
57151042 TT-AAGGTCCGCAA
66 TTAAAGACCCGCAA
* * ** * *
57151055 GCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGTTGGAATTATATCCGG
1 GCTTCGTGCTAGAATTGTATCCGGACTT-AAGGTCCGCAGGCT-TCATGCTGGAATTGTATCCGG
*
57151119 GCTTAAAGACCCGCAG
64 GCTTAAAGACCCGCAA
* * *
57151135 GCTTTGTGCTAGAATTGTATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGC
1 GCTTCGTGCTAGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTGTATCCGGGC
*
57151200 TTAAAGACCCACAA
66 TTAAAGACCCGCAA
* * ** * * * *
57151214 GCTTCGTGCTAGAATTGTATCTGGGCTTAAAGACCCACAGGCTTCGTGCTAGAATTGTATCCGGA
1 GCTTCGTGCTAGAATTGTATCCGGACTT-AAGGTCCGCAGGCTTCATGCTGGAATTGTATCCGGG
57151279 CTTAA
65 CTTAA
57151284 GATTCGTAGG
Statistics
Matches: 193, Mismatches: 31, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
78 28 0.15
79 96 0.50
80 69 0.36
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (79 bp):
GCTTCGTGCTAGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTGTATCCGGGC
TTAAAGACCCGCAA
Found at i:57151295 original size:119 final size:119
Alignment explanation
Indices: 57150971--57151304 Score: 440
Period size: 119 Copynumber: 2.8 Consensus size: 119
57150961 GACTTAAGGT
* * * * * *
57150971 CCACAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCTGCA-A-GCTTCATGCTGGAATTGT
1 CCACAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC-CCACAGGCTTCGTGCTAGAATTGT
*
57151034 ATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
65 ATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * * *
57151089 CCGCAGGCTAT-ATGTTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTAGAATTGT
1 CCACAGGCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTAGAATTGT
*
57151153 ATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
65 ATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * *
57151208 CCACAAGCTTCGTGCTAGAATTGTATCTGGGCTTAAAGACCCACAGGCTTCGTGCTAGAATTGTA
1 CCACAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTAGAATTGTA
* * * *
57151273 TCCGGACTTAAGATTCGTAGGCTTTGTGCTGG
66 TCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
57151305 TACTATATTC
Statistics
Matches: 184, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
117 1 0.01
118 33 0.18
119 150 0.82
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (119 bp):
CCACAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTAGAATTGTA
TCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:57151295 original size:158 final size:158
Alignment explanation
Indices: 57150953--57151363 Score: 502
Period size: 158 Copynumber: 2.6 Consensus size: 158
57150943 ATATTTGATG
* * * * *
57150953 TATATCCGGACTTAAGGTCCACAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAAGC
1 TATATCCGGACTTAAGATCCGCAGGCTTTGTGCTGGAATTGTATTCGGACTTAAGGTCTGCAGGC
* * ** * *
57151018 TTCATGCTGGAATTGTATCCGGACTT-AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCT
66 TTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAAGCTTCGTGCTAGAATTGTATCCGGGCT
* * *
57151082 TAAAGACCCGCAGGCTATATGTTGGAAT
131 TAAAGACCCACAGGCTATATGCTAGAAT
* * * *
57151110 TATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTAGAATTGTATTCGGACTTAAGGTCCGCAGG
1 TATATCCGGACTT-AAGATCCGCAGGCTTTGTGCTGGAATTGTATTCGGACTTAAGGTCTGCAGG
*
57151175 CTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAAGCTTCGTGCTAGAATTGTATCTGGGC
65 CTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAAGCTTCGTGCTAGAATTGTATCCGGGC
*
57151240 TTAAAGACCCACAGGCT-TCGTGCTAGAAT
130 TTAAAGACCCACAGGCTAT-ATGCTAGAAT
* * * * * * *
57151269 TGTATCCGGACTTAAGATTCGTAGGCTTTGTGCTGGTACTATATTCGGACTAAAGGTCTGCAGGC
1 TATATCCGGACTTAAGATCCGCAGGCTTTGTGCTGGAATTGTATTCGGACTTAAGGTCTGCAGGC
* * * * *
57151334 TTCGTACTGGTACTATATCCGAGCTTAAAG
66 TTCGTGCTGGAATTGTATCCGGGCTTAAAG
57151364 TCCCGTAGGC
Statistics
Matches: 215, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
157 12 0.06
158 137 0.64
159 66 0.31
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (158 bp):
TATATCCGGACTTAAGATCCGCAGGCTTTGTGCTGGAATTGTATTCGGACTTAAGGTCTGCAGGC
TTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAAGCTTCGTGCTAGAATTGTATCCGGGCT
TAAAGACCCACAGGCTATATGCTAGAAT
Found at i:57154083 original size:89 final size:89
Alignment explanation
Indices: 57153932--57154109 Score: 338
Period size: 89 Copynumber: 2.0 Consensus size: 89
57153922 ACTAGTGAAA
*
57153932 ACAGAATTAGACGATTGAGTCATGATTGAATTATATTGATGATTGAGTGTAGTAGTTATACTCGG
1 ACAGAATTAGACGATTGAGTCATGATTGAATTATATTGATGATTGAGTGCAGTAGTTATACTCGG
*
57153997 GTAGTTACTATTACTTCTTCGGGG
66 GCAGTTACTATTACTTCTTCGGGG
57154021 ACAGAATTAGACGATTGAGTCATGATTGAATTATATTGATGATTGAGTGCAGTAGTTATACTCGG
1 ACAGAATTAGACGATTGAGTCATGATTGAATTATATTGATGATTGAGTGCAGTAGTTATACTCGG
57154086 GCAGTTACTATTACTTCTTCGGGG
66 GCAGTTACTATTACTTCTTCGGGG
57154110 CATTCTATGT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (89 bp):
ACAGAATTAGACGATTGAGTCATGATTGAATTATATTGATGATTGAGTGCAGTAGTTATACTCGG
GCAGTTACTATTACTTCTTCGGGG
Found at i:57154313 original size:12 final size:12
Alignment explanation
Indices: 57154296--57154325 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
57154286 TGAAAATCAA
57154296 ATATATACATAT
1 ATATATACATAT
57154308 ATATATACATAT
1 ATATATACATAT
57154320 ATATAT
1 ATATAT
57154326 GTGATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATACATAT
Found at i:57156693 original size:14 final size:15
Alignment explanation
Indices: 57156674--57156707 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
57156664 TCATATAGCA
57156674 TCATAACTCAAATG-
1 TCATAACTCAAATGC
*
57156688 TCATAACTCATATGC
1 TCATAACTCAAATGC
57156703 TCATA
1 TCATA
57156708 CAATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (15 bp):
TCATAACTCAAATGC
Done.