Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 177 of 276
Found at i:58350442 original size:14 final size:13
Alignment explanation
Indices: 58350422--58350453 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
58350412 AATATTTGAC
58350422 TTGTTCTTAATTA
1 TTGTTCTTAATTA
58350435 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
58350449 TTGTT
1 TTGTT
58350454 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:58351174 original size:16 final size:17
Alignment explanation
Indices: 58351155--58351199 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
58351145 TACTTTAGCC
58351155 ATTTACTTTTACTTC-A
1 ATTTACTTTTACTTCTA
*
58351171 ATTTAAATTTTA-TTCTA
1 ATTT-ACTTTTACTTCTA
58351188 ATTT-CTTTTACT
1 ATTTACTTTTACT
58351200 AATTCTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
15 5 0.21
16 8 0.33
17 11 0.46
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTACTTTTACTTCTA
Found at i:58353297 original size:17 final size:17
Alignment explanation
Indices: 58353275--58353308 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
58353265 TTCTAGACAT
58353275 AGAGGAGGATAGCAACA
1 AGAGGAGGATAGCAACA
58353292 AGAGGAGGATAGCAACA
1 AGAGGAGGATAGCAACA
58353309 CTCCTTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.35, T:0.06
Consensus pattern (17 bp):
AGAGGAGGATAGCAACA
Found at i:58355275 original size:28 final size:28
Alignment explanation
Indices: 58355170--58355346 Score: 161
Period size: 27 Copynumber: 6.5 Consensus size: 28
58355160 ATATTGAGTC
* * *
58355170 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
* *
58355197 CGCACACTTAGTGCTACGTAATCAAA-T
1 CGCACACTTAGTGCTACATAGTCAAACT
*
58355224 CGTACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
** * *
58355252 CGCACACTTAGTGCCGCATGGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
* **
58355279 CGCACACTTAGTGC-ATCATATTC-ATTT
1 CGCACACTTAGTGCTA-CATAGTCAAACT
*
58355306 CGCACACTTAGTGCAACATAGT-AAA-T
1 CGCACACTTAGTGCTACATAGTCAAACT
*
58355332 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
58355347 GTACAATTTA
Statistics
Matches: 126, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
26 14 0.11
27 89 0.71
28 23 0.18
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:58355286 original size:55 final size:54
Alignment explanation
Indices: 58355170--58355346 Score: 187
Period size: 55 Copynumber: 3.3 Consensus size: 54
58355160 ATATTGAGTC
* * * * *
58355170 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* * ** * *
58355224 CGTACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
58355279 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
58355332 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
58355347 GTACAATTTA
Statistics
Matches: 101, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
53 16 0.16
54 41 0.41
55 44 0.44
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:58355313 original size:82 final size:80
Alignment explanation
Indices: 58355191--58355345 Score: 204
Period size: 82 Copynumber: 1.9 Consensus size: 80
58355181 TGCTATATAA
* * *
58355191 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGTACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-AAA-TCGCA
*
58355256 CACTTAGTGCCGCATGG
64 CACATAGTGCCGCATGG
* * **
58355273 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTAAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCAC
58355337 ACATAGTGC
65 ACATAGTGC
58355346 TGTACAATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 14 0.22
81 4 0.06
82 46 0.72
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCACA
CATAGTGCCGCATGG
Found at i:58375382 original size:50 final size:50
Alignment explanation
Indices: 58375307--58375407 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
58375297 TATTAACAAA
*
58375307 TTATAGTATATACTATTAAATAAAACCCAACAAAACTATGGCGTGCAATT
1 TTATAGTATATACTATTAAATAAAACCCAACAAAAATATGGCGTGCAATT
58375357 TTATAGTATATACTATTAAATAAAACCCAACAAAAATATGGCGTGCAATT
1 TTATAGTATATACTATTAAATAAAACCCAACAAAAATATGGCGTGCAATT
58375407 T
1 T
58375408 GATCATAAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.31
Consensus pattern (50 bp):
TTATAGTATATACTATTAAATAAAACCCAACAAAAATATGGCGTGCAATT
Found at i:58378383 original size:39 final size:40
Alignment explanation
Indices: 58378258--58378442 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
58378248 GCTACTCGTT
* *
58378258 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
58378298 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
58378338 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
58378377 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
58378418 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
58378443 CATCATTCGA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 75 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:58385296 original size:58 final size:58
Alignment explanation
Indices: 58385226--58385342 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
58385216 GTTTCACAAC
58385226 TCGAAAATCAGTTTCGTTATTTTTCCCTGAAACTAGACTCATATATGCATCTACAAAT
1 TCGAAAATCAGTTTCGTTATTTTTCCCTGAAACTAGACTCATATATGCATCTACAAAT
58385284 TCGAAAATCAGTTTCGTTATTTTTCCCTGAAACTAGACTCATATATGCATCTACAAAT
1 TCGAAAATCAGTTTCGTTATTTTTCCCTGAAACTAGACTCATATATGCATCTACAAAT
58385342 T
1 T
58385343 TTTTTCTAGA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (58 bp):
TCGAAAATCAGTTTCGTTATTTTTCCCTGAAACTAGACTCATATATGCATCTACAAAT
Found at i:58386657 original size:79 final size:81
Alignment explanation
Indices: 58386515--58386697 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
58386505 TACTCGTTCA
* *
58386515 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
58386579 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
* * **
58386595 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATGTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
58386657 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
58386674 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
58386698 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:58386697 original size:40 final size:40
Alignment explanation
Indices: 58386494--58386697 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
58386484 CAGAATTTAA
** *
58386494 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58386534 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58386574 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
58386613 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATGTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
58386653 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58386693 CCGGA
1 CCGGA
58386698 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58393477 original size:14 final size:13
Alignment explanation
Indices: 58393457--58393488 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
58393447 AATATTTGAC
58393457 TTGTTCTTAATTA
1 TTGTTCTTAATTA
58393470 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
58393484 TTGTT
1 TTGTT
58393489 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:58399146 original size:40 final size:40
Alignment explanation
Indices: 58399101--58399605 Score: 877
Period size: 40 Copynumber: 12.6 Consensus size: 40
58399091 CAAGCTCAAT
* * * * *
58399101 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58399141 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
58399181 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
58399221 CGCCATCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58399261 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58399301 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58399341 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58399381 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58399421 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58399461 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58399501 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
58399541 TGCCTTCAGGTCTAAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58399581 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
58399606 CATTCAAATG
Statistics
Matches: 442, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 439 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:58405375 original size:41 final size:41
Alignment explanation
Indices: 58405238--58405422 Score: 216
Period size: 41 Copynumber: 4.6 Consensus size: 41
58405228 CGATTCTTAA
* * * *
58405238 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCAG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * * *
58405277 CCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
*
58405318 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTTGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
* *
58405359 CACTGGCTCAAAAGCCCTTCGTAATTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
58405400 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
58405423 CCCAAGCTTG
Statistics
Matches: 123, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
40 43 0.35
41 77 0.63
43 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:58407914 original size:27 final size:27
Alignment explanation
Indices: 58407873--58407932 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
58407863 GTACCTAGTC
58407873 CCCCTAGTTGATAAAATGACTATTATG
1 CCCCTAGTTGATAAAATGACTATTATG
*
58407900 CCCCTAGTTGGTAAAATGACTATTATG
1 CCCCTAGTTGATAAAATGACTATTATG
58407927 CCCCTA
1 CCCCTA
58407933 TGAGATGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (27 bp):
CCCCTAGTTGATAAAATGACTATTATG
Found at i:58416827 original size:47 final size:47
Alignment explanation
Indices: 58416715--58416837 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
58416705 AGGATTCTAT
* * * * * *
58416715 GTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGAT
1 GTGATGGATGTGAA-AGTGTATATATGTGACAAGGCCGAATGGCCAAC
* * *
58416762 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
*
58416809 GTGATGGATGTGAAAGTGTATAAATGTGA
1 GTGATGGATGTGAAAGTGTATATATGTGA
58416838 TAAGTCCTGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 1 0.02
47 63 0.98
ACGTcount: A:0.32, C:0.10, G:0.33, T:0.26
Consensus pattern (47 bp):
GTGATGGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
Found at i:58417016 original size:37 final size:37
Alignment explanation
Indices: 58416960--58417038 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
58416950 CCGAGCTCTA
* * *
58416960 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
58416997 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
58417034 AAGAC
1 AAGAC
58417039 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:58418534 original size:23 final size:23
Alignment explanation
Indices: 58418468--58418534 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
58418458 ATATATCTGG
58418468 GCTAAGTCCCGAGGAGCATTCGT
1 GCTAAGTCCCGAGGAGCATTCGT
* * *
58418491 GCT-AGT---GA-TA-TATTCGG
1 GCTAAGTCCCGAGGAGCATTCGT
58418508 GCTAAGTCCCGAGGAGCATTCGT
1 GCTAAGTCCCGAGGAGCATTCGT
58418531 GCTA
1 GCTA
58418535 GTGATATATC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 8 0.25
18 4 0.12
19 2 0.06
21 2 0.06
22 4 0.12
23 12 0.38
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.25
Consensus pattern (23 bp):
GCTAAGTCCCGAGGAGCATTCGT
Found at i:58418617 original size:40 final size:40
Alignment explanation
Indices: 58418254--58418605 Score: 524
Period size: 40 Copynumber: 8.8 Consensus size: 40
58418244 GAGAATTGAG
*
58418254 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
58418294 AGTGATTTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
58418334 AGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
58418374 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
58418414 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
58418454 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
58418494 AGTGATATATTCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
58418534 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
58418574 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
58418606 ATCATGCTGG
Statistics
Matches: 286, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 286 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:58421884 original size:40 final size:40
Alignment explanation
Indices: 58421827--58422049 Score: 219
Period size: 40 Copynumber: 5.7 Consensus size: 40
58421817 TCGAATGATG
58421827 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGAT-CCGAAGGCATTTGTGCT-AGTGACCATA
* * *
58421867 TCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACTATA
1 TCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACCATA
*
58421907 TCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACCATA
1 TCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACCATA
* * * * *
58421947 ACCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATA
1 TCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACCATA
* * *
58421987 TCCGGGCTAAGACCCGAAGGCATTTG-G--AGTTACTATA
1 TCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACCATA
* *
58422024 ACCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGGCTAAGAT-CCGAAGGCATTTG
58422050 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
36 2 0.01
37 28 0.18
39 2 0.01
40 113 0.72
41 12 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACCATA
Found at i:58421964 original size:80 final size:79
Alignment explanation
Indices: 58421827--58422049 Score: 274
Period size: 80 Copynumber: 2.8 Consensus size: 79
58421817 TCGAATGATG
* * *
58421827 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTT-TGCT-AGTGACCATAACCGGGCTAAGACCCGAAGGCATT
*
58421891 TGTGCTAG-CGACTATA
64 TGTGCGAGTCGA-TATA
*
58421907 TCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATAACCGGGTTAAGACCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTT-TGCTAGTGACCATAACCGGGCTAAGACCCGAAGGCATTT
*
58421972 GTGCGAGTTGATATA
65 GTGCGAGTCGATATA
* * * * * *
58421987 TCCGGGCTAAGACCCGAAGGCA-TTTG-GAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTTGCTAGTGACCATAACCGGGCTAAGACCCGAAGGCATTTG
58422050 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
77 31 0.24
78 2 0.02
79 2 0.02
80 83 0.65
81 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTTGCTAGTGACCATAACCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTCGATATA
Found at i:58425338 original size:47 final size:47
Alignment explanation
Indices: 58425287--58426307 Score: 1911
Period size: 47 Copynumber: 21.7 Consensus size: 47
58425277 TTAGGATTCT
* * * *
58425287 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
58425334 ATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425381 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425428 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425475 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425522 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425569 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425616 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425663 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425710 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425757 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425804 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425851 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425898 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425945 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58425992 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58426039 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58426086 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58426133 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58426180 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
58426227 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
58426274 ACGTGATGGATGTGAAAGTGTATA-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
58426308 TCCCGAAGGG
Statistics
Matches: 958, Mismatches: 15, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
46 9 0.01
47 949 0.99
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:58428526 original size:26 final size:26
Alignment explanation
Indices: 58428456--58428519 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
58428446 GTGCCTAGAC
*
58428456 CCCCTAGTTGATAAAATGACTATTATG
1 CCCCTAG-TGAGAAAATGACTATTATG
*
58428483 CCCCTAGTGAGAAAATGACTGTTATG
1 CCCCTAGTGAGAAAATGACTATTATG
58428509 CCCCTA-TGAGA
1 CCCCTAGTGAGA
58428520 TGTATGATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 5 0.14
26 23 0.66
27 7 0.20
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (26 bp):
CCCCTAGTGAGAAAATGACTATTATG
Found at i:58428863 original size:34 final size:33
Alignment explanation
Indices: 58428812--58428883 Score: 83
Period size: 34 Copynumber: 2.2 Consensus size: 33
58428802 TCTGTATCGT
* *
58428812 TACTGTTACTGAGATGGGCTCAGGCCTAAACTAA
1 TACTGTTACTGAGATGGGCTAAGCCCT-AACTAA
*
58428846 TACTGTTATTGTA-ATGGGCTAAGCCCTAACTAA
1 TACTGTTACTG-AGATGGGCTAAGCCCTAACTAA
*
58428879 AACTG
1 TACTG
58428884 AACCATTACT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 10 0.30
34 22 0.67
35 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (33 bp):
TACTGTTACTGAGATGGGCTAAGCCCTAACTAA
Found at i:58429171 original size:16 final size:18
Alignment explanation
Indices: 58429133--58429173 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
58429123 GCCTTTATGT
58429133 ATTTTTACTTTAATTTGG
1 ATTTTTACTTTAATTTGG
* *
58429151 GTTTTTA-TTT-ATTTTG
1 ATTTTTACTTTAATTTGG
58429167 ATTTTTA
1 ATTTTTA
58429174 ACTGCTAGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
16 11 0.55
17 3 0.15
18 6 0.30
ACGTcount: A:0.20, C:0.02, G:0.10, T:0.68
Consensus pattern (18 bp):
ATTTTTACTTTAATTTGG
Found at i:58432232 original size:24 final size:24
Alignment explanation
Indices: 58432193--58432282 Score: 92
Period size: 24 Copynumber: 3.8 Consensus size: 24
58432183 TACCGATATA
* *
58432193 TCAGCTCATAAGAGCTTACTGTTT
1 TCAGCTCGTAAAAGCTTACTGTTT
**
58432217 TCAGCTCGTTGAAGCTTACTG-TT
1 TCAGCTCGTAAAAGCTTACTGTTT
* *
58432240 TCAGCTCATAAAAGCTTACTATTT
1 TCAGCTCGTAAAAGCTTACTGTTT
* * *
58432264 TTAGCTCGTCAGAGCTTAC
1 TCAGCTCGTAAAAGCTTAC
58432283 CATTTCAGCT
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
23 19 0.36
24 34 0.64
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (24 bp):
TCAGCTCGTAAAAGCTTACTGTTT
Found at i:58432254 original size:23 final size:23
Alignment explanation
Indices: 58432193--58432309 Score: 103
Period size: 23 Copynumber: 5.0 Consensus size: 23
58432183 TACCGATATA
58432193 TCAGCTCATAAGAGCTTACTGTTT
1 TCAGCTCATAAGAGCTTACTG-TT
* *
58432217 TCAGCTCGT-TGAAGCTTACTGTT
1 TCAGCTCATAAG-AGCTTACTGTT
* *
58432240 TCAGCTCATAAAAGCTTACTATTT
1 TCAGCTCATAAGAGCTTACT-GTT
* * * **
58432264 TTAGCTCGTCAGAGCTTACCATT
1 TCAGCTCATAAGAGCTTACTGTT
58432287 TCAGCTCA-ATAGAGCTTACTGTT
1 TCAGCTCATA-AGAGCTTACTGTT
58432310 CATAGCTAGA
Statistics
Matches: 72, Mismatches: 17, Indels: 9
0.73 0.17 0.09
Matches are distributed among these distances:
23 38 0.53
24 34 0.47
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (23 bp):
TCAGCTCATAAGAGCTTACTGTT
Found at i:58432256 original size:47 final size:47
Alignment explanation
Indices: 58432178--58432309 Score: 151
Period size: 47 Copynumber: 2.7 Consensus size: 47
58432168 CAGCTCGAAC
*
58432178 GAGCTTACCGATATATCAGCTCATAAGAGCTTACTGTTTTCAGCTCGT-T
1 GAGCTTACC-AT-T-TCAGCTCATAAGAGCTTACTGTTTTCAGCTCGTCA
** * * *
58432227 GAAGCTTACTGTTTCAGCTCATAAAAGCTTACTATTTTTAGCTCGTCA
1 G-AGCTTACCATTTCAGCTCATAAGAGCTTACTGTTTTCAGCTCGTCA
58432275 GAGCTTACCATTTCAGCTCA-ATAGAGCTTACTGTT
1 GAGCTTACCATTTCAGCTCATA-AGAGCTTACTGTT
58432310 CATAGCTAGA
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
46 1 0.01
47 58 0.83
48 2 0.03
49 2 0.03
50 7 0.10
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.36
Consensus pattern (47 bp):
GAGCTTACCATTTCAGCTCATAAGAGCTTACTGTTTTCAGCTCGTCA
Found at i:58434004 original size:27 final size:27
Alignment explanation
Indices: 58433981--58434377 Score: 351
Period size: 27 Copynumber: 14.7 Consensus size: 27
58433971 TTCGATTTGT
58433981 AAAATTACTGTTTTACCCTTGATTTAC
1 AAAATTACTGTTTTACCCTTGATTTAC
** * *
58434008 TGAATTACTGGTTTACCC-TCAGTTTAC
1 AAAATTACTGTTTTACCCTTGA-TTTAC
*
58434035 AAAATTA-TCGTTTTACCCTCGATTTAC
1 AAAATTACT-GTTTTACCCTTGATTTAC
* * **
58434062 AGAATTACCGTTTTACCCTCAATTTAC
1 AAAATTACTGTTTTACCCTTGATTTAC
* *
58434089 AGAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACTGTTTTACCCTTGATTTAC
* * * *
58434116 AGAATTACCGTTTTATCC-TCAGTTTAC
1 AAAATTACTGTTTTACCCTTGA-TTTAC
* * *
58434143 AGAATTACTGTTTTACCCTCGATTTAT
1 AAAATTACTGTTTTACCCTTGATTTAC
* ** *
58434170 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACTGTTTTACCCTTGATTTAC
* *
58434197 AAAATTACCGTTTTACCC-TCAGTTTAC
1 AAAATTACTGTTTTACCCTTGA-TTTAC
* *
58434224 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTGTTTTACCCTTGATTTAC
* * * *
58434251 AGAACTACCGTTTTACCC-TCAGTTTAC
1 AAAATTACTGTTTTACCCTTGA-TTTAC
*
58434278 AGAATTACTGTTTTACCCTTGATTTAC
1 AAAATTACTGTTTTACCCTTGATTTAC
* *
58434305 AAAATTACTGGTTTACCC-TCAGTTTAC
1 AAAATTACTGTTTTACCCTTGA-TTTAC
*
58434332 AAAATTA-TCGTTTTACCCTCGATTTAC
1 AAAATTACT-GTTTTACCCTTGATTTAC
* *
58434359 AGAATTACCG-TTTACCCTT
1 AAAATTACTGTTTTACCCTT
58434378 AATTGTGAAA
Statistics
Matches: 308, Mismatches: 48, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
26 18 0.06
27 284 0.92
28 6 0.02
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
AAAATTACTGTTTTACCCTTGATTTAC
Found at i:58434039 original size:54 final size:55
Alignment explanation
Indices: 58433981--58434377 Score: 440
Period size: 54 Copynumber: 7.4 Consensus size: 55
58433971 TTCGATTTGT
* * *
58433981 AAAATTACTGTTTTACCCTTGATTTACTGAATTACTGGTTTACCCTCAG-TTTAC
1 AAAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAGATTTAC
*
58434035 AAAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA-ATTTAC
1 AAAATTACT-GTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAGATTTAC
* * *
58434089 AGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTTTATCCTCAG-TTTAC
1 AAAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAGATTTAC
* * * *
58434143 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-GATTTAC
1 AAAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAGATTTAC
* * *
58434197 AAAATTACCGTTTTACCC-TCAGTTTACAGAATTACTGTTTTACCCTC-GATTTAC
1 AAAATTACTGTTTTACCCTTGA-TTTACAGAATTACCGTTTTACCCTCAGATTTAC
* * * * * *
58434251 AGAACTACCGTTTTACCC-TCAGTTTACAGAATTACTGTTTTACCCT-TGATTTAC
1 AAAATTACTGTTTTACCCTTGA-TTTACAGAATTACCGTTTTACCCTCAGATTTAC
* * * *
58434305 AAAATTACTGGTTTACCC-TCAGTTTACAAAATTATCGTTTTACCCTC-GATTTAC
1 AAAATTACTGTTTTACCCTTGA-TTTACAGAATTACCGTTTTACCCTCAGATTTAC
* *
58434359 AGAATTACCG-TTTACCCTT
1 AAAATTACTGTTTTACCCTT
58434378 AATTGTGAAA
Statistics
Matches: 303, Mismatches: 31, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
53 10 0.03
54 293 0.97
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (55 bp):
AAAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAGATTTAC
Found at i:58434094 original size:81 final size:81
Alignment explanation
Indices: 58433983--58434376 Score: 521
Period size: 81 Copynumber: 4.9 Consensus size: 81
58433973 CGATTTGTAA
* * * * * *
58433983 AATTACTGTTTTACCCTTGATTTACTGAATTACTGGTTTACCCTC-AGTTTACAAAATTATCGTT
1 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACCGTT
58434047 TTACCCTC-GATTTACAG
65 TTACCCTCAG-TTTACAG
* * *
58434064 AATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTT
1 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
*
58434129 TATCCTCAGTTTACAG
66 TACCCTCAGTTTACAG
* * *
58434145 AATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
1 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
58434210 TACCCTCAGTTTACAG
66 TACCCTCAGTTTACAG
* *
58434226 AATTACTGTTTTACCCTCGATTTACAGAACTACCGTTTTACCCTC-AGTTTACAGAATTACTGTT
1 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACCGTT
* *
58434290 TTACCCT-TGATTTACAA
65 TTACCCTCAG-TTTACAG
* * *
58434307 AATTACTGGTTTACCCTC-AGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCG-T
1 AATTACTGTTTTACCCTCGA-TTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTT
58434370 TTACCCT
65 TTACCCT
58434377 TAATTGTGAA
Statistics
Matches: 278, Mismatches: 29, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
80 11 0.04
81 264 0.95
82 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (81 bp):
AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
TACCCTCAGTTTACAG
Found at i:58434416 original size:27 final size:26
Alignment explanation
Indices: 58434386--58434581 Score: 203
Period size: 27 Copynumber: 7.3 Consensus size: 26
58434376 TTAATTGTGA
*
58434386 AATTACTGAAATAGCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
* * *
58434413 AATTTCCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
* * *
58434440 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCC-TGTAGGGTAG
*
58434467 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
*
58434494 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCC-TGTAGGGTAG
* *
58434521 AAATACCGAAGTACCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
* * *
58434548 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCC-TGTAGGGTAG
58434575 AATTACC
1 AATTACC
58434582 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.06
27 126 0.89
28 6 0.04
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (26 bp):
AATTACCGAAATACCCTGTAGGGTAG
Found at i:58434445 original size:54 final size:54
Alignment explanation
Indices: 58434386--58434577 Score: 255
Period size: 54 Copynumber: 3.6 Consensus size: 54
58434376 TTAATTGTGA
* * * *
58434386 AATTACTGAAATAGCCC-TGTAGGGTAGAATTTCCAAAATACCCCTATAGGGTAG
1 AATTACTGAAATA-CCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* *
58434440 AATTACTGAAATACCCTTATAGGATAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
*
58434494 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAGTACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * *
58434548 AATTACCGAGATACCCTTGTGGGGTA-AAAT
1 AATTACTGAAATACCCTTGTAGGGTAGAAAT
58434578 TACCATTTTG
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
53 8 0.07
54 115 0.93
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:58434818 original size:27 final size:26
Alignment explanation
Indices: 58434780--58434862 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
58434770 CGGAGGAAGC
*
58434780 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
58434807 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
58434833 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
58434860 GTT
1 GTT
58434863 GGCCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:58434980 original size:22 final size:22
Alignment explanation
Indices: 58434950--58435008 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
58434940 CCCGTTATTA
*
58434950 ATGGTTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
58434972 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
58434994 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
58435009 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:58435195 original size:27 final size:27
Alignment explanation
Indices: 58435173--58435246 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
58435163 TAGGTGGGTT
*
58435173 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
58435200 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
58435227 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
58435247 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:58435395 original size:6 final size:6
Alignment explanation
Indices: 58435386--58435415 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
58435376 ATTCTGTCAC
58435386 CTGATT CTGATT CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT
58435416 TTAGTTATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (6 bp):
CTGATT
Found at i:58436454 original size:76 final size:76
Alignment explanation
Indices: 58436368--58436522 Score: 283
Period size: 76 Copynumber: 2.0 Consensus size: 76
58436358 ATTAACAATC
*
58436368 AAAGTACATGTATATACGTACACATAATTATCAATTTTTCAAAAATGTATATAATGCTCATGGTG
1 AAAGTACATGTATATACGTACACATAATTATCAATTTTTCAAAAATGCATATAATGCTCATGGTG
58436433 TACTATTACAT
66 TACTATTACAT
* *
58436444 AAAGTACATGTATATATGTACACATAATTATCAATTTTTCAAAAATGCATATAATGGTCATGGTG
1 AAAGTACATGTATATACGTACACATAATTATCAATTTTTCAAAAATGCATATAATGCTCATGGTG
58436509 TACTATTACAT
66 TACTATTACAT
58436520 AAA
1 AAA
58436523 ATCACTATTC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (76 bp):
AAAGTACATGTATATACGTACACATAATTATCAATTTTTCAAAAATGCATATAATGCTCATGGTG
TACTATTACAT
Found at i:58439353 original size:37 final size:37
Alignment explanation
Indices: 58439303--58439381 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
58439293 TTATTACGAA
* *
58439303 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
58439340 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
58439377 GTCTT
1 GTCTT
58439382 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:58439578 original size:47 final size:47
Alignment explanation
Indices: 58439500--58439785 Score: 437
Period size: 47 Copynumber: 6.1 Consensus size: 47
58439490 CCCTTCGGGA
* * * * * * *
58439500 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
58439547 CCCGTCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58439594 CTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58439641 CTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58439688 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58439735 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58439782 CTTA
1 CTTA
58439786 CTATCATTTC
Statistics
Matches: 218, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 218 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58447785 original size:79 final size:78
Alignment explanation
Indices: 58447683--58447905 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
58447673 GCTCCTCGTT
* *
58447683 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
58447748 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
58447763 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
58447826 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
58447841 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
58447904 GA
63 GA
58447906 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:58447800 original size:39 final size:40
Alignment explanation
Indices: 58447683--58447905 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
58447673 GCTCCTCGTT
* *
58447683 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
58447723 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
58447763 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
58447802 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
58447841 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
58447882 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
58447906 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:58453131 original size:40 final size:40
Alignment explanation
Indices: 58453076--58453155 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
58453066 ACAGGCCCTG
*
58453076 TTAGTAGACTTACCCCAACATTCACCTAGGTGTCGTCTTC
1 TTAGTAGACTTACCCCAACATTCACCTAGGAGTCGTCTTC
58453116 TTAGTAGACTTACCCCAACATTCACCTAGGAGTCGTCTTC
1 TTAGTAGACTTACCCCAACATTCACCTAGGAGTCGTCTTC
58453156 CGCATTGGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (40 bp):
TTAGTAGACTTACCCCAACATTCACCTAGGAGTCGTCTTC
Found at i:58479817 original size:56 final size:56
Alignment explanation
Indices: 58479755--58479861 Score: 205
Period size: 56 Copynumber: 1.9 Consensus size: 56
58479745 TTTGTTTCGA
58479755 GATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGGATTACTT
1 GATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGGATTACTT
*
58479811 GATGTTTAATATGTCAACAGGTGAAAGCGGAACATCAAGTGCCTTCAGGAT
1 GATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGGAT
58479862 GGCTTCAGCC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (56 bp):
GATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGGATTACTT
Found at i:58481015 original size:17 final size:17
Alignment explanation
Indices: 58480985--58481018 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
58480975 AAATTAAGTA
**
58480985 AGTATCCACGTTTCTAT
1 AGTATCCAAATTTCTAT
58481002 AGTATCCAAATTTCTAT
1 AGTATCCAAATTTCTAT
58481019 CTCTCTTAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (17 bp):
AGTATCCAAATTTCTAT
Found at i:58481113 original size:3 final size:3
Alignment explanation
Indices: 58481096--58481129 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
58481086 AATACAAAAG
58481096 AGA AGA AGTA A-A AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AG-A AGA AGA AGA AGA AGA AGA AGA AGA A
58481130 ACTAGCTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.86
4 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:58489302 original size:40 final size:39
Alignment explanation
Indices: 58489271--58489480 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
58489261 GGACTAAGAT
* *
58489271 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
58489311 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
58489351 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
58489391 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
58489431 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
58489470 CCGAAGGCATT
1 CCGAAGGCATT
58489481 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:58489434 original size:120 final size:120
Alignment explanation
Indices: 58489218--58489480 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
58489208 TTGAATGCTG
* *
58489218 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
58489282 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
58489338 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
58489401 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
58489457 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
58489481 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:58489500 original size:79 final size:80
Alignment explanation
Indices: 58489219--58489515 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
58489209 TGAATGCTGT
* ** * * * **
58489219 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
58489282 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
58489299 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
58489363 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
58489379 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
58489443 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
58489458 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
58489516 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:58496742 original size:39 final size:40
Alignment explanation
Indices: 58496538--58496760 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
58496528 TTGAATGCTG
* * * * * *
58496538 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
58496578 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
58496618 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
58496658 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
58496698 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
58496737 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58496761 TGAACGAGGA
Statistics
Matches: 163, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 36 0.22
40 119 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:58496780 original size:79 final size:80
Alignment explanation
Indices: 58496612--58496795 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
58496602 TGTGCGAGAT
* * *
58496612 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
** *
58496677 GCATTCGTGCGAGTT
66 GCATTCGAACGAGTG
* * * *
58496692 ATTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
*
58496756 GCATTTGAACGAG-G
66 GCATTCGAACGAGTG
* *
58496770 AGCTATATCC-GGTTAAATCCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
58496796 TACGTGATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 15 0.17
79 45 0.51
80 28 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
GCATTCGAACGAGTG
Found at i:58498836 original size:34 final size:34
Alignment explanation
Indices: 58498793--58498862 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
58498783 TTTCCTAAAC
*
58498793 TATATGGAATGCTTATCATACATATGCATGAACA
1 TATATGGAATGCTCATCATACATATGCATGAACA
58498827 TATATGGAATGCTCATCATACATATGCATGAACA
1 TATATGGAATGCTCATCATACATATGCATGAACA
58498861 TA
1 TA
58498863 CTTTGTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (34 bp):
TATATGGAATGCTCATCATACATATGCATGAACA
Found at i:58502905 original size:38 final size:38
Alignment explanation
Indices: 58502855--58502943 Score: 144
Period size: 38 Copynumber: 2.4 Consensus size: 38
58502845 ATTTTATTTG
58502855 CATA-CATAAATGTGTAAATTTTAGCAAAGTGTATGAA
1 CATACCATAAATGTGTAAATTTTAGCAAAGTGTATGAA
* * *
58502892 CATACCATAAATGTGTAATTTTTAGCGAAGTGTATGAG
1 CATACCATAAATGTGTAAATTTTAGCAAAGTGTATGAA
58502930 CATACCATAAATGT
1 CATACCATAAATGT
58502944 ACAACAATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
37 4 0.08
38 44 0.92
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (38 bp):
CATACCATAAATGTGTAAATTTTAGCAAAGTGTATGAA
Found at i:58509069 original size:22 final size:22
Alignment explanation
Indices: 58509042--58509106 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
58509032 GTACATACGT
*
58509042 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
58509064 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
58509086 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
58509107 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:58509306 original size:41 final size:41
Alignment explanation
Indices: 58509246--58509329 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
58509236 CTTAAAAGCC
*
58509246 ATCGGTGGATCCACAGTCGTCAAGCAACCATGTGATCCTTA
1 ATCGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTA
*
58509287 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTA
1 ATCGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTA
58509328 AT
1 AT
58509330 TTCTTCCTCC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
ATCGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTA
Found at i:58509608 original size:27 final size:27
Alignment explanation
Indices: 58509561--58509652 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
58509551 GGGCAAAACA
* *
58509561 GTCATTTTACCCTATAGGGGTATGTT-G
1 GTCATTTTACACTATAAGGGTAT-TTCG
*
58509588 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTATAAGGGTATTTCG
*
58509615 GTAATTTTACACTATAAGGGTATTTCG
1 GTCATTTTACACTATAAGGGTATTTCG
* *
58509642 ATAATTTTACA
1 GTCATTTTACA
58509653 AATCAGGGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.03
27 56 0.97
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.40
Consensus pattern (27 bp):
GTCATTTTACACTATAAGGGTATTTCG
Found at i:58509662 original size:27 final size:28
Alignment explanation
Indices: 58509604--58510320 Score: 572
Period size: 27 Copynumber: 26.7 Consensus size: 28
58509594 TTACACTACA
* *
58509604 AGGGTATTTCGGTAATTTTACACTAT-A-
1 AGGGTATTTCGATAATTTTACA-AATCAG
58509631 AGGGTATTTCGATAATTTTACAAATCAG
1 AGGGTATTTCGATAATTTTACAAATCAG
* * * *
58509659 -GGGTGTTTTGGTAATTTTATAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* * *
58509685 AGGGTATTTTGGTAATTTTACAAAT-TG
1 AGGGTATTTCGATAATTTTACAAATCAG
* * *
58509712 AAGGTATTTTGGTAATTTTACAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
*
58509739 AGGGTATTTC-AGTAATCTTACAAATC-G
1 AGGGTATTTCGA-TAATTTTACAAATCAG
* *
58509766 AGGGTGTTTCGATAATTTTACAAAT-TG
1 AGGGTATTTCGATAATTTTACAAATCAG
* * *
58509793 AGGGTGTTTCGGTAATTTTAAAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* * * *
58509820 AGGGTGTTTAGATAATTTCACAAATCGGG
1 AGGGTATTTCGATAATTTTACAAATC-AG
*
58509849 AGGGTA-TTCTGATAATTTTACAAAT-TG
1 AGGGTATTTC-GATAATTTTACAAATCAG
* *
58509876 AGGGTATTT-TAGTAATTTCAC-AATC-G
1 AGGGTATTTCGA-TAATTTTACAAATCAG
*
58509902 AGGG--TTTCGATAATTTTAAAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* *
58509927 AGGGTGTTTCGGTAATTTTACAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
*
58509954 AGGGTGTTTCGATAATTTTACAAATCAAG
1 AGGGTATTTCGATAATTTTACAAATC-AG
* * *
58509983 AGTGT-TTTAG-TAATTTCACAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* *
58510008 GGGGTATTTCGGTAATTTTACAAATCA-
1 AGGGTATTTCGATAATTTTACAAATCAG
* *
58510035 AGGGTATTTCGGTAATTTCAC-AATCA-
1 AGGGTATTTCGATAATTTTACAAATCAG
58510061 AGGGTATTTCGATAATTTTACAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* * *
58510088 GGGGTGTTTCGATAATTTCACAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* * *
58510115 GGGGTATTCCAATAATTTTACAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* * *
58510142 GGGGTGTTTCGATAATTTCACAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* * *
58510169 GGGGTATTCCAATAATTTTACAAATC-G
1 AGGGTATTTCGATAATTTTACAAATCAG
* * *
58510196 AGGGTATTTTGATAATTTCAC-AAT-TG
1 AGGGTATTTCGATAATTTTACAAATCAG
* *
58510222 AGGGTATTTCGGTAATTTTACAAACCA-
1 AGGGTATTTCGATAATTTTACAAATCAG
*
58510249 AGGGTATTTCAATAATTTTACAAA-CTAG
1 AGGGTATTTCGATAATTTTACAAATC-AG
* * ** *
58510277 -GGGTATTTTGGTAATTTTGTAAACCAG
1 AGGGTATTTCGATAATTTTACAAATCAG
*
58510304 -GGGTA-TTCAATAATTTT
1 AGGGTATTTCGATAATTTT
58510321 GTAAACCAAT
Statistics
Matches: 579, Mismatches: 79, Indels: 65
0.80 0.11 0.09
Matches are distributed among these distances:
24 10 0.02
25 14 0.02
26 72 0.12
27 448 0.77
28 10 0.02
29 25 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (28 bp):
AGGGTATTTCGATAATTTTACAAATCAG
Found at i:58509672 original size:54 final size:54
Alignment explanation
Indices: 58509604--58510294 Score: 673
Period size: 54 Copynumber: 12.9 Consensus size: 54
58509594 TTACACTACA
* * *
58509604 AGGGTATTTCGGTAATTTTACACTAT-AAGGGTATTTCGATAATTTTACAAATC-
1 AGGGTGTTTCGGTAATTTTACA-AATCGAGGGTATTTCGATAATTTTACAAATCG
* * * * *
58509657 AGGGGTGTTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* * * *
58509712 AAGGTATTTTGGTAATTTTACAAATCGAGGGTATTTC-AGTAATCTTACAAATCG
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCG
* * * * *
58509766 AGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGGTAATTTTAAAAATCG
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* * * *
58509820 AGGGTGTTTAGATAATTTCACAAATCGGGAGGGTA-TTCTGATAATTTTACAAATTG
1 AGGGTGTTTCGGTAATTTTACAAATC--GAGGGTATTTC-GATAATTTTACAAATCG
* ** * *
58509876 AGGGTATTTTAGTAATTTCAC-AATCGAGGG--TTTCGATAATTTTAAAAATCG
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* *
58509927 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCA
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* ** * * * *
58509981 AGAGTGTTTTAGTAATTTCACAAATCGGGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* * *
58510035 AGGGTATTTCGGTAATTTCAC-AATCAAGGGTATTTCGATAATTTTACAAATCG
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* * * * * *
58510088 GGGGTGTTTCGATAATTTCACAAATCGGGGGTATTCCAATAATTTTACAAATCG
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* * * * * *
58510142 GGGGTGTTTCGATAATTTCACAAATCGGGGGTATTCCAATAATTTTACAAATCG
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* * * * * * * *
58510196 AGGGTATTTTGATAATTTCAC-AATTGAGGGTATTTCGGTAATTTTACAAACCA
1 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* ** * * *
58510249 AGGGTATTTCAATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTT
1 AGGGTGTTTCGGTAATTTTACAAATCGA-GGGTATTTCGATAATTTT
58510295 GTAAACCAGG
Statistics
Matches: 542, Mismatches: 81, Indels: 29
0.83 0.12 0.04
Matches are distributed among these distances:
51 32 0.06
52 12 0.02
53 98 0.18
54 355 0.65
55 8 0.01
56 37 0.07
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
Found at i:58509962 original size:161 final size:160
Alignment explanation
Indices: 58509604--58510294 Score: 784
Period size: 161 Copynumber: 4.3 Consensus size: 160
58509594 TTACACTACA
* * * *
58509604 AGGGTATTTCGGTAATTTTACACTAT-AAGGGTATTTCGATAATTTTACAAATC-AGGGGTGTTT
1 AGGGTGTTTCGATAATTTTACA-AATCGAGGGTATTTCGATAATTTTACAAATCGA-GGGTGTTT
* * * * * * * * * *
58509667 TGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTTGGTAATTTTA
64 AGATAATTTCACAAATCGGGGGTATTCTGATAATTTTACAAATCGAGGGTATTTTGGTAATTTCA
*
58509732 CAAATCGAGGGTATTTC-AGTAATCTTACAAATCG
129 C-AATCGAGGG-ATTTCGA-TAATTTTACAAATCG
* * * *
58509766 AGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGGTAATTTTAAAAATCGAGGGTGTTTAG
1 AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTAG
* *
58509831 ATAATTTCACAAATCGGGAGGGTATTCTGATAATTTTACAAATTGAGGGTATTTTAGTAATTTCA
66 ATAATTTCACAAATC-GG-GGGTATTCTGATAATTTTACAAATCGAGGGTATTTTGGTAATTTCA
*
58509896 CAATCGAGGG-TTTCGATAATTTTAAAAATCG
129 CAATCGAGGGATTTCGATAATTTTACAAATCG
* * * *
58509927 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCAAGAGTGTTTTA
1 AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTG-TTTA
* * *
58509992 G-TAATTTCACAAATCGGGGGTATT-TCGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTCA
65 GATAATTTCACAAATCGGGGGTATTCT-GATAATTTTACAAATCGAGGGTATTTTGGTAATTTCA
*
58510055 CAATCAAGGGTATTTCGATAATTTTACAAATCG
129 CAATCGAGGG-ATTTCGATAATTTTACAAATCG
* * * * * * *
58510088 GGGGTGTTTCGATAATTTCACAAATCGGGGGTATTCCAATAATTTTACAAATCGGGGGTGTTTCG
1 AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTAG
** *
58510153 ATAATTTCACAAATCGGGGGTATTCCAATAATTTTACAAATCGAGGGTATTTTGATAATTTCACA
66 ATAATTTCACAAATCGGGGGTATTCTGATAATTTTACAAATCGAGGGTATTTTGGTAATTTCACA
* * * *
58510218 ATTGAGGGTATTTCGGTAATTTTACAAACCA
131 ATCGAGGG-ATTTCGATAATTTTACAAATCG
* * * * *
58510249 AGGGTATTTCAATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTT
1 AGGGTGTTTCGATAATTTTACAAATCGA-GGGTATTTCGATAATTTT
58510295 GTAAACCAGG
Statistics
Matches: 453, Mismatches: 64, Indels: 25
0.84 0.12 0.05
Matches are distributed among these distances:
158 1 0.00
159 48 0.11
160 7 0.02
161 274 0.60
162 70 0.15
163 11 0.02
164 42 0.09
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (160 bp):
AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTAG
ATAATTTCACAAATCGGGGGTATTCTGATAATTTTACAAATCGAGGGTATTTTGGTAATTTCACA
ATCGAGGGATTTCGATAATTTTACAAATCG
Found at i:58511696 original size:42 final size:42
Alignment explanation
Indices: 58511649--58511770 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
58511639 TAAGGTTAGT
* *
58511649 TGAGATTACGTGTAAAACCATATCTGGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* ** * *
58511691 TGAGATTTCATGTAAGACCATAGATGGGCTATTAGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATA-TGGCATCGATA
** *
58511734 TGAGATCCCATGTAAGACCACATCTGGGATATGGCAT
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCAT
58511771 TGGTATGGTA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:58520579 original size:15 final size:15
Alignment explanation
Indices: 58520559--58520589 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
58520549 AAATATGAAA
58520559 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
58520574 GATATGTTTTGTATT
1 GATATGTTTTGGATT
58520589 G
1 G
58520590 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:58521653 original size:168 final size:168
Alignment explanation
Indices: 58521346--58521714 Score: 461
Period size: 168 Copynumber: 2.2 Consensus size: 168
58521336 GTATATGAGA
* * *
58521346 CATCGATATGTGATTACGTGTAAGACCACGTCTGGAACATTGGCATCGATATGTGATTATGTGTA
1 CATCAATATGTGATTACGTGTAAGACCACATCTGGAACATTGGCATCGATATGTGATTAGGTGTA
** **
58521411 AGACCACGTCTGGGATGTTGGCATCGAAATGTGATTACGTGTAAGACCACGTCTAGGACATTGGC
66 AGACCACGTCTGGGACATTGGCATCGAAATGTGATTACGTGTAAGACCACGTCTAGGACATTAAC
58521476 ATCGATATGTGATTAAGTGTGCACGTCTGGGACGTTGG
131 ATCGATATGTGATTAAGTGTGCACGTCTGGGACGTTGG
* * * *
58521514 CATCAATATGTGATTATGTGTAAGACTACATCTGGGACGTTGGCATCGATATGTGATTAGGTGTA
1 CATCAATATGTGATTACGTGTAAGACCACATCTGGAACATTGGCATCGATATGTGATTAGGTGTA
* * * * **
58521579 AGACCACGTTTGGGACATTGGCATCGATATGTGATTATGTGTAAGACCACGTCTGGGATGTTAAC
66 AGACCACGTCTGGGACATTGGCATCGAAATGTGATTACGTGTAAGACCACGTCTAGGACATTAAC
* * * * *
58521644 ATTGATATGTGTTTAAGAGTAAGACCCTTTCTGGGACAG-TGG
131 ATCGATATGTGATTAAGTGT--G-CAC-GTCTGGGAC-GTTGG
* * *
58521686 CATCGATATGTGATTACATGTAAGTCCAC
1 CATCAATATGTGATTACGTGTAAGACCAC
58521715 GTTAGGGATG
Statistics
Matches: 169, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
168 130 0.77
170 1 0.01
171 2 0.01
172 35 0.21
173 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (168 bp):
CATCAATATGTGATTACGTGTAAGACCACATCTGGAACATTGGCATCGATATGTGATTAGGTGTA
AGACCACGTCTGGGACATTGGCATCGAAATGTGATTACGTGTAAGACCACGTCTAGGACATTAAC
ATCGATATGTGATTAAGTGTGCACGTCTGGGACGTTGG
Found at i:58521730 original size:43 final size:43
Alignment explanation
Indices: 58521346--58521731 Score: 453
Period size: 43 Copynumber: 9.1 Consensus size: 43
58521336 GTATATGAGA
* *
58521346 CATCGATATGTGATTACGTGTAAGACCACGTCTGGAACATTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* *
58521389 CATCGATATGTGATTATGTGTAAGACCACGTCTGGGATGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * *
58521432 CATCGAAATGTGATTACGTGTAAGACCACGTCTAGGACATTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
*
58521475 CATCGATATGTGATTAAGTGT--G--CACGTCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * * *
58521514 CATCAATATGTGATTATGTGTAAGACTACATCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * *
58521557 CATCGATATGTGATTAGGTGTAAGACCACGTTTGGGACATTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * **
58521600 CATCGATATGTGATTATGTGTAAGACCACGTCTGGGATGTTAA
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * * * *
58521643 CATTGATATGTGTTTAAGAGTAAGACC-CTTTCTGGGACAG-TGG
1 CATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGG
* * *
58521686 CATCGATATGTGATTACATGTAAGTCCACGT-TAGGGATGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCT-GGGACGTTGG
58521729 CAT
1 CAT
58521732 TGTACCAAAT
Statistics
Matches: 289, Mismatches: 45, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.12
41 2 0.01
42 3 0.01
43 248 0.86
44 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (43 bp):
CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
Found at i:58523834 original size:29 final size:31
Alignment explanation
Indices: 58523802--58523859 Score: 84
Period size: 29 Copynumber: 1.9 Consensus size: 31
58523792 TCCGAGCCTT
* *
58523802 GGGGCAAAATTGTTA-TTTTGTA-AAAGTTA
1 GGGGCAAAAATGTAATTTTTGTATAAAGTTA
58523831 GGGGCAAAAATGTAATTTTTGTATAAAGT
1 GGGGCAAAAATGTAATTTTTGTATAAAGT
58523860 GATTTTTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.52
30 7 0.28
31 5 0.20
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.36
Consensus pattern (31 bp):
GGGGCAAAAATGTAATTTTTGTATAAAGTTA
Found at i:58529570 original size:83 final size:83
Alignment explanation
Indices: 58529416--58530426 Score: 1833
Period size: 83 Copynumber: 12.3 Consensus size: 83
58529406 TATTCGGATG
* * *
58529416 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATATCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
* *
58529478 GCATTTGTGCAAGTTACT
66 GCATTTGTGCTAGTGACT
58529496 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58529561 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58529579 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58529644 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58529662 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58529727 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58529745 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58529810 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58529828 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58529893 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58529911 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58529976 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58529994 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58530059 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58530077 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58530142 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58530160 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58530225 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
58530243 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
58530308 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
** * **
58530326 ATATCCGGGCTAAGTCCCGAAGGCATTCATGC---TAG-TGACTATATCCGGGCTAAGACCCGAA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CTATACCCGGGCTAAGTGCCGAA
*
58530387 GGCATTTGTGCGAGTTG-CT
65 GGCATTTGTGCTAG-TGACT
*
58530406 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
58530427 ATACTTGGGT
Statistics
Matches: 914, Mismatches: 12, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
79 16 0.02
80 76 0.08
81 3 0.00
83 819 0.90
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (83 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTGCCGAAG
GCATTTGTGCTAGTGACT
Found at i:58532451 original size:43 final size:43
Alignment explanation
Indices: 58532404--58532529 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
58532394 CACAATTATC
**
58532404 CTGACACATACAGTGCATAATTAGATAAATTGAAGTATCTATA
1 CTGACACATACAGTGCATAATCGGATAAATTGAAGTATCTATA
* * ** *
58532447 CTGACATATACAATGCATAATCGGATAACCTGAAATATCTATA
1 CTGACACATACAGTGCATAATCGGATAAATTGAAGTATCTATA
* * *
58532490 CTGGCACATACAGTGCATCATCGGATAAATTGAAGCATCT
1 CTGACACATACAGTGCATAATCGGATAAATTGAAGTATCT
58532530 CATCATCGGA
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (43 bp):
CTGACACATACAGTGCATAATCGGATAAATTGAAGTATCTATA
Found at i:58532538 original size:25 final size:25
Alignment explanation
Indices: 58532505--58532554 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
58532495 ACATACAGTG
*
58532505 CATCATCGGATAAATTGAAGCATCT
1 CATCATCGGATAAACTGAAGCATCT
*
58532530 CATCATCGGATAAACTGAAGTATCT
1 CATCATCGGATAAACTGAAGCATCT
58532555 ATACTAGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (25 bp):
CATCATCGGATAAACTGAAGCATCT
Found at i:58532629 original size:43 final size:42
Alignment explanation
Indices: 58532530--58532764 Score: 184
Period size: 43 Copynumber: 5.5 Consensus size: 42
58532520 TGAAGCATCT
*
58532530 CATCATCGGATAAACTGAAGTATCTATACTAGCAAATACAGTG
1 CATCATCGGATAAAC-GAAGTATCTATACTAGCAAATATAGTG
** * * *
58532573 CATCATCAAATAAAGCAAAGTATCTATACTAGCATATATAATG
1 CATCATCGGATAAA-CGAAGTATCTATACTAGCAAATATAGTG
* * *
58532616 CATCATTGGATAAATTGAAGTATCTATACT-GGAACATATAGTG
1 CATCATCGGATAAA-CGAAGTATCTATACTAGCAA-ATATAGTG
* * * ** * *
58532659 CGTCATTGGATAAACTGAAGAAAATATACTAGCACACATAGTG
1 CATCATCGGATAAAC-GAAGTATCTATACTAGCAAATATAGTG
* ** * * * * *
58532702 CATCATCGGATAAACTGAAGAAAATATGCTGGCACACACAGTG
1 CATCATCGGATAAAC-GAAGTATCTATACTAGCAAATATAGTG
58532745 CATCATCGGATAAATCGAAG
1 CATCATCGGATAAA-CGAAG
58532765 AAAATATACT
Statistics
Matches: 159, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.01
43 153 0.96
44 4 0.03
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (42 bp):
CATCATCGGATAAACGAAGTATCTATACTAGCAAATATAGTG
Found at i:58532687 original size:86 final size:86
Alignment explanation
Indices: 58532530--58532774 Score: 224
Period size: 86 Copynumber: 2.8 Consensus size: 86
58532520 TGAAGCATCT
* ** * * ** * * *
58532530 CATCATCGGATAAACTGAAGTATCTATACTAGCAA-ATACAGTGCATCATCAAATAAAGCAAAGT
1 CATCATCGGATAAACTGAAGAAAATATACT-GGAACACACAGTGCATCATCGGATAAATCGAAGA
** * *
58532594 ATCTATACTAGCATATATAATG
65 AAATATACTAGCACACATAATG
* * * ** * * * *
58532616 CATCATTGGATAAATTGAAGTATCTATACTGGAACATATAGTGCGTCATTGGATAAA-CTGAAGA
1 CATCATCGGATAAACTGAAGAAAATATACTGGAACACACAGTGCATCATCGGATAAATC-GAAGA
*
58532680 AAATATACTAGCACACATAGTG
65 AAATATACTAGCACACATAATG
* *
58532702 CATCATCGGATAAACTGAAGAAAATATGCTGGCACACACAGTGCATCATCGGATAAATCGAAGAA
1 CATCATCGGATAAACTGAAGAAAATATACTGGAACACACAGTGCATCATCGGATAAATCGAAGAA
58532767 AATATACT
66 AATATACT
58532775 GTCACACTAT
Statistics
Matches: 130, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
85 4 0.03
86 125 0.96
87 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.25
Consensus pattern (86 bp):
CATCATCGGATAAACTGAAGAAAATATACTGGAACACACAGTGCATCATCGGATAAATCGAAGAA
AATATACTAGCACACATAATG
Found at i:58532765 original size:43 final size:43
Alignment explanation
Indices: 58532614--58532781 Score: 203
Period size: 43 Copynumber: 3.9 Consensus size: 43
58532604 GCATATATAA
* * * ** * *
58532614 TGCATCATTGGATAAATTGAAGTATCTATACTGGAACATATAG
1 TGCATCATCGGATAAACTGAAGAAAATATACTGGCACACATAG
* * *
58532657 TGCGTCATTGGATAAACTGAAGAAAATATACTAGCACACATAG
1 TGCATCATCGGATAAACTGAAGAAAATATACTGGCACACATAG
* *
58532700 TGCATCATCGGATAAACTGAAGAAAATATGCTGGCACACACAG
1 TGCATCATCGGATAAACTGAAGAAAATATACTGGCACACATAG
*
58532743 TGCATCATCGGATAAA-TCGAAGAAAATATACTGTCACAC
1 TGCATCATCGGATAAACT-GAAGAAAATATACTGGCACAC
58532782 TATAACACCC
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 108 0.99
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.24
Consensus pattern (43 bp):
TGCATCATCGGATAAACTGAAGAAAATATACTGGCACACATAG
Found at i:58534402 original size:16 final size:18
Alignment explanation
Indices: 58534359--58534402 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
58534349 CATTTAAAGT
*
58534359 ATATCAAATTATACTATC
1 ATATCAAATTAGACTATC
58534377 ATATTCAAATTAGACT-TC
1 ATA-TCAAATTAGACTATC
58534395 A-ATCAAAT
1 ATATCAAAT
58534403 GATTTAACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 6 0.25
17 1 0.04
18 6 0.25
19 11 0.46
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.36
Consensus pattern (18 bp):
ATATCAAATTAGACTATC
Found at i:58535103 original size:37 final size:37
Alignment explanation
Indices: 58535062--58535135 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
58535052 CATCAAATTG
*
58535062 TTAATTATAATTTTGCAACTAATTGTTTAAGCTTATA
1 TTAATTATAATTTTACAACTAATTGTTTAAGCTTATA
*
58535099 TTAATTATAATTTTACAATTAATTGTTTAAGCTTATA
1 TTAATTATAATTTTACAACTAATTGTTTAAGCTTATA
58535136 GAGTCCCTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (37 bp):
TTAATTATAATTTTACAACTAATTGTTTAAGCTTATA
Found at i:58539328 original size:21 final size:21
Alignment explanation
Indices: 58539304--58539346 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
58539294 AATACGTAAC
*
58539304 AAAATGTAAAATGGTGTATGG
1 AAAATGTAAAATGGAGTATGG
58539325 AAAATGTAAAATGGAGTATGG
1 AAAATGTAAAATGGAGTATGG
58539346 A
1 A
58539347 GTATTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.28, T:0.26
Consensus pattern (21 bp):
AAAATGTAAAATGGAGTATGG
Found at i:58540517 original size:24 final size:24
Alignment explanation
Indices: 58540466--58540519 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
58540456 TTTGTATATC
* * *
58540466 CCGGGATGGCTCGCCGGATCATCA
1 CCGGGATGGATCGCCGGAGCACCA
* *
58540490 CCGGGATGGATCGTCGGAGCACCT
1 CCGGGATGGATCGCCGGAGCACCA
58540514 CCGGGA
1 CCGGGA
58540520 ACCTAACCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.31, G:0.37, T:0.15
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCA
Found at i:58548188 original size:43 final size:43
Alignment explanation
Indices: 58548164--58549153 Score: 737
Period size: 43 Copynumber: 23.7 Consensus size: 43
58548154 CATCCAATGT
* * **
58548164 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * * *
58548207 CCAAGG-TGCCAATGCTGCTCGAGGCTTCCGCAC-ATCCGAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* *
58548250 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
58548292 CCTAGGTTACCTATGGTGCCCGAGGCTCCCGCACGACCAAAGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
58548335 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** *
58548378 CGAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
58548420 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
58548463 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
58548506 CCTAGGTAT--CGATGGTGCCCGAGGATCCCGCACAACCAGGGG
1 CCTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
58548548 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGTACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58548591 CCTAGGTTGCCGATGGTG-CCGAGGCTCGCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ***** *
58548633 CCTAGGTTGCCCATGGTG-CCGAGAGAAGGTGC-CG---ATGGTG
1 CCTAGGTTGCCGATGGTGCCCGAG-GCTCCCGCACGACCAAGG-G
* * * * * ** ** *** * *
58548673 CCCGAGGCTCCCGCA-CG-ACCAAAGGC-CTAGGTTG-CCGATGG
1 -CCTAGGTTGCCG-ATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
58548714 --T--G-T-CCGA-GGCT-CCCGTA--CATCCAAGCACG---AAGGTG
1 CCTAGGTTGCCGATGG-TGCCCG-AGGC-TCC-CGCACGACCAAGG-G
* * *
58548749 CCGATGG-TGCCCGA-GGCT-CCC--GC-------ACGACCAAAGG
1 CCTA-GGTTG-CCGATGG-TGCCCGAGGCTCCCGCACGACCAAGGG
* * **
58548783 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** *
58548826 CGAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58548868 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58548910 CCTAGGTTGCCGATGGTGCCCGAGGATCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
58548953 CCTAGGTTGCCGATGGTGCCTGAGGCTCCTGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
58548996 CCTAGGTTACCGATGGTG-CCGAGGCTCGCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58549038 CCTAGGTTGCCGATGGTG-CCGAGACTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58549080 CCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
58549123 CCTAGGTTGCCGATGGTGTCTGAGGCTCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
58549154 TACATGTAAC
Statistics
Matches: 781, Mismatches: 113, Indels: 106
0.78 0.11 0.11
Matches are distributed among these distances:
32 3 0.00
33 10 0.01
34 17 0.02
35 7 0.01
36 5 0.01
39 4 0.01
40 5 0.01
41 14 0.02
42 317 0.41
43 397 0.51
44 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.34, T:0.16
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:58548215 original size:85 final size:85
Alignment explanation
Indices: 58548105--58548623 Score: 453
Period size: 85 Copynumber: 6.1 Consensus size: 85
58548095 TTTTCTTTAG
* * ** * * *
58548105 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCAT-CCGCAC-ATCCAATGTCCTA
1 CCCGCACATCC-AAGCACCAAGGTGCCAATGCTGCCCGAGGC-TCCCGCACGA-CCAAGGGCCTA
* *
58548168 GGTTGCCTATGGTGTCCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
* * * * *
58548191 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTTCCGCAC-ATCCGAGGCACCAAG
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAG
58548255 G-TGCCGATGGTGCCCGAGGCT
64 GTTGCCGATGGTGCCCGAGGCT
* ** * * * * *
58548276 CCCGCATGA-CCAAGGGCCTAGGTTACCTATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAG
1 CCCGCA-CATCCAAGCACCAAGG-TGCCAATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
58548340 GTTGCCGATGGTGTCCGAGGCT
64 GTTGCCGATGGTGCCCGAGGCT
* * * * *
58548362 CCCGTACATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
58548427 TGCCGATGGTGCCCGAGGCT
66 TGCCGATGGTGCCCGAGGCT
* ** * * * *
58548447 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
58548511 GTAT--CGATGGTGCCCGAGGAT
64 GT-TGCCGATGGTGCCCGAGGCT
* * ** * * * * * *
58548532 CCCGCACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGTACGACCAGGGGCCTAGG
1 CCCGCACATCCAAGCACCAAGG-TGCCAATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
58548597 TTGCCGATGGTG-CCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
*
58548617 CGCGCAC
1 CCCGCAC
58548624 GACCAGGGGC
Statistics
Matches: 374, Mismatches: 46, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
84 3 0.01
85 241 0.64
86 128 0.34
87 2 0.01
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (85 bp):
CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
TGCCGATGGTGCCCGAGGCT
Found at i:58548384 original size:128 final size:127
Alignment explanation
Indices: 58548105--58549153 Score: 752
Period size: 128 Copynumber: 8.4 Consensus size: 127
58548095 TTTTCTTTAG
* ** * * ** *
58548105 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCAT-CCGCAC-ATCCAATGTCCTA
1 CCCGCACATCC-AGGCACCAAGGTGCCGATGGTGCCCGAGGC-TCCCGCACGA-CCAGGGGCCTA
* * * * * *
58548168 GGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCC-AAGCACCAAGG-TGCCAATGCTGCTCGAG
63 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAAG-GCCTAGGTTGCCGATGGTGC-CGAG
58548230 GCT
125 GCT
* * *
58548233 TCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGG
1 CCCGCACATCC-AGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG
* *
58548298 TTACCTATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTG-CCGAGGCT
* * *
58548362 CCCGTACATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 CCCGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
**
58548427 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
66 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTG-CCGAGGCT
** * ** * *
58548490 CCCGCACGA-CCAGGGGCCTAGGTATCGATGGTGCCCGAGGATCCCGCACAACCAGGGGCCTAGG
1 CCCGCAC-ATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG
* * **
58548554 TTGCCGATGGTGCCCGAGGCTCCTGTACGACCAGGGGCCTAGGTTGCCGATGGTGCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCGAGGCT
* ** * * * *
58548617 CGCGCACGA-CCAGGGGCCTAGGTTGCCCATGGTG-CCGA-------G-A-GA--AGGTGCCGAT
1 CCCGCAC-ATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA-
** * * * * * * *
58548669 GG-TGCCCGA-GGCT-CCCGCA--CGACC-AAAGGCCTAGGTTGCCGATGG-TGTCCGA-GGCTC
63 GGTTG-CCGATGG-TGCCCG-AGGCTCCCGCACGACCAAAG--GCCTA-GGTTG-CCGATGG-TG
58548726 CCGTA--CAT
120 CCG-AGGC-T
* * **
58548734 --C-CA-A-GCA--C-G-AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGT
1 CCCGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
* * *
58548790 TGCCGATGGTGTCCGAGGCTCCCGTAC-ATCC-AA-GCACGAAGG-TGCCGATGGTGCCCGAGGC
66 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAAGGC-C-TAGGTTGCCGATGGTG-CCGAGGC
58548851 T
127 T
** * *
58548852 CCCGCACGA-CCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGG
1 CCCGCAC-ATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG
* **
58548916 TTGCCGATGGTGCCCGAGGATCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCTGAGGCT
65 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCC-GAGGCT
* ** * * *
58548980 CCTGCACGA-CCAGGGGCCTAGGTTACCGATGGTG-CCGAGGCTCGCGCACGACCAGGGGCCTAG
1 CCCGCAC-ATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
* **
58549043 GTTGCCGATGGTG-CCGAGACTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCT
64 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTG-CCGAGGCT
* * * * *
58549107 TCCGCACATCCAAGG-GCCTAGGTTGCCGATGGTGTCTGAGGCTCCCG
1 CCCGCACATCC-AGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCG
58549154 TACATGTAAC
Statistics
Matches: 762, Mismatches: 96, Indels: 126
0.77 0.10 0.13
Matches are distributed among these distances:
107 10 0.01
108 7 0.01
112 3 0.00
114 8 0.01
115 4 0.01
116 25 0.03
117 29 0.04
118 21 0.03
119 15 0.02
120 6 0.01
121 5 0.01
123 3 0.00
126 1 0.00
127 179 0.23
128 402 0.53
129 43 0.06
130 1 0.00
ACGTcount: A:0.17, C:0.33, G:0.34, T:0.16
Consensus pattern (127 bp):
CCCGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCGAGGCT
Found at i:58548629 original size:85 final size:86
Alignment explanation
Indices: 58548164--58549153 Score: 876
Period size: 85 Copynumber: 11.9 Consensus size: 86
58548154 CATCCAATGT
* * * ** * * * *
58548164 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
* **
58548227 GAGGCTTCCGCAC-ATCCGAGGCA
65 GAGGCTCCCGCACGA-CC-AGGGG
* * * * *
58548250 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTACCTATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
**
58548314 AGGCTCCCGCACGACCAAAGG
66 AGGCTCCCGCACGACCAGGGG
* * * ** **
58548335 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCACGAAGG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
58548398 GAGGCTCCCGCACGACCAGGGG
65 GAGGCTCCCGCACGACCAGGGG
58548420 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
58548485 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* *
58548506 CCTAGGTAT--CGATGGTGCCCGAGGATCCCGCACAACCAGGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCC
* *
58548569 GAGGCTCCTGTACGACCAGGGG
65 GAGGCTCCCGCACGACCAGGGG
* *
58548591 CCTAGGTTGCCGATGGTG-CCGAGGCTCGCGCACGACCAGGGGCCTAGGTTGCCCATGGTG-CCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
*
58548654 A-------G-A-GA--AGGTG
66 AGGCTCCCGCACGACCAGGGG
* * ** * * *
58548664 CCGATGG-TGCCCGA-GGCT-CCCGCACGAC-CAAAGGC-C---TAGGTTGCCGATGG-TGTCCG
1 CCTA-GGTTG-CCGATGG-TGCCCG-A-GGCTC--CCGCACGACCAGG-GGCCTA-GGTTG-CCG
*
58548720 A-GGCT-CCCGTA--CATCCAAGCACGA--A----
56 ATGG-TGCCCG-AGGC-TCC-CGCACGACCAGGGG
** *
58548745 ----GG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
* * **
58548805 AGGCTCCCGTAC-ATCCAAGCA
66 AGGCTCCCGCACGA-CCAGGGG
**
58548826 CGAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG-TGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
*
58548889 AGGCTCTCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* *
58548910 CCTAGGTTGCCGATGGTGCCCGAGGATCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
*
58548975 AGGCTCCTGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* *
58548996 CCTAGGTTACCGATGGTG-CCGAGGCTCGCGCACGACCAGGGGCCTAGGTTGCCGATGGTG-CCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
*
58549059 AGACTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * * * *
58549080 CCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGTCT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
58549144 GAGGCTCCCG
65 GAGGCTCCCG
58549154 TACATGTAAC
Statistics
Matches: 753, Mismatches: 89, Indels: 124
0.78 0.09 0.13
Matches are distributed among these distances:
73 16 0.02
74 22 0.03
75 31 0.04
76 29 0.04
77 6 0.01
83 1 0.00
84 77 0.10
85 394 0.52
86 175 0.23
87 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.34, T:0.16
Consensus pattern (86 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAGGGG
Found at i:58548701 original size:65 final size:65
Alignment explanation
Indices: 58548598--58548721 Score: 196
Period size: 65 Copynumber: 1.9 Consensus size: 65
58548588 GGGCCTAGGT
* **
58548598 TGCCGATGGTGCCGAGGCTCGCGCACGACCAGGGGCCTAGGTTGCCCATGGTG-CCGAGAGAAGG
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCCATGGTGTCCGAGAGAAGG
*
58548662 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCGAG
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCCATGGTGTCCGAG
58548722 GCTCCCGTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 11 0.20
65 38 0.70
66 5 0.09
ACGTcount: A:0.17, C:0.30, G:0.38, T:0.15
Consensus pattern (65 bp):
TGCCGATGGTGCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCCATGGTGTCCGAGAGAAGG
Found at i:58548756 original size:107 final size:107
Alignment explanation
Indices: 58548555--58548759 Score: 270
Period size: 107 Copynumber: 1.9 Consensus size: 107
58548545 GGGCCTAGGT
* * ** *
58548555 TGCCGATGGTGCCCGAGGCTCCTGTACGACCAGGGGCCTAGGTTGCCGATGGTGCCGAGGCTCGC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
* ** *
58548620 GCACGACCAGGGGCCTAGGTTGCCCATGGTGCCGAGAGAAGG
66 GCACGACCAAGCACCAAGGTTGCCCATGGTGCCGAGAGAAGG
58548662 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
* * *
58548727 CGTAC-ATCCAAGCACGAAGG-TGCCGATGGTGCC
65 CGCACGA-CCAAGCACCAAGGTTGCCCATGGTGCC
58548760 CGAGGCTCCC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 63 0.75
108 21 0.25
ACGTcount: A:0.17, C:0.31, G:0.36, T:0.16
Consensus pattern (107 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
GCACGACCAAGCACCAAGGTTGCCCATGGTGCCGAGAGAAGG
Found at i:58548786 original size:150 final size:151
Alignment explanation
Indices: 58548515--58548806 Score: 410
Period size: 150 Copynumber: 1.9 Consensus size: 151
58548505 GCCTAGGTAT
** *
58548515 CGATGGTGCCCGAGGATCCCGCACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGT
1 CGATGGTGCCCGAGGATCCCGCACAACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGT
* ** * * **
58548580 ACGACCAGGGGCCTAGGTTGCCGATGGTGCCGAGGCTCGCGCACGACCAGGGGCCTAGGTTGCCC
66 ACGACCAAGCACCAAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCC
58548645 ATGGTG-CCGAGAGAAGGTGC
131 ATGGTGTCCGAGAGAAGGTGC
* * *
58548665 CGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGT
1 CGATGGTGCCCGAGGATCCCGCACAACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGT
*
58548730 AC-ATCCAAGCACGAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGC
66 ACGA-CCAAGCACCAAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGC
*
58548793 CGATGGTGTCCGAG
129 CCATGGTGTCCGAG
58548807 GCTCCCGTAC
Statistics
Matches: 124, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
149 12 0.10
150 107 0.86
151 5 0.04
ACGTcount: A:0.18, C:0.31, G:0.36, T:0.15
Consensus pattern (151 bp):
CGATGGTGCCCGAGGATCCCGCACAACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGT
ACGACCAAGCACCAAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCC
ATGGTGTCCGAGAGAAGGTGC
Found at i:58548850 original size:235 final size:234
Alignment explanation
Indices: 58548427--58549140 Score: 702
Period size: 235 Copynumber: 3.0 Consensus size: 234
58548417 GGGCCTAGGT
**
58548427 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* ** * * **
58548492 CGCACGACCAGGGGCCTAGGTATCGATGGTGCCCGAGGATCCCGCACAACCAGGGGCCTAGGTTG
66 CGCACGACCAAGCACCAAGGTACCGATGGTGCCCGAGGATCCCGCACAACCAAAGGCCTAGGTTG
* * ** * *
58548557 CCGATGGTGCCCGAGGCTCCTGTACGACCAGGGGCCTAGGTTGCCGATGGTGCCGAGGCTCGCGC
131 CCGATGGTGCCCGAGGCTCCCGTACGACCAAGCACCAAGGTTGCCGATGGTGCCGAGGCTCCCGC
58548622 ACGACCAGGGGCCTAGGTTGCCCATGGTGCCGAGAGAAGG
196 ACGACCAGGGGCCTAGG-TGCCCATGGTGCCGAGAGAAGG
*
58548662 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * *
58548727 CGTAC-ATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTT
66 CGCACGA-CCAAGCACCAAGGTACCGATGGTGCCCGAGGATCCCGCACAACCAAAGGCCTAGGTT
* *
58548791 GCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCACGAAGG-TGCCGATGGTGCCCGAGGCTCC
130 GCCGATGGTGCCCGAGGCTCCCGTACGA-CCAAGCACCAAGGTTGCCGATGGTG-CCGAGGCTCC
*
58548854 CGCACGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGG
193 CGCACGACCAGGGGCCTAGGTGCCCATGGTG-CCGA-------G-A-G---A-------AGG
* ** *
58548916 TTGCCGATGGTGCCCGAGGATCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCTGAGGCTC
1 -TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* * ** * * * * **
58548981 CTGCACGACCAGGGGCCTAGGTTACCGATGGTG-CCGAGGCTCGCGCACGACCAGGGGCCTAGGT
65 CCGCACGACCAAGCACCAAGG-TACCGATGGTGCCCGAGGATCCCGCACAACCAAAGGCCTAGGT
* * * ** * *
58549045 TGCCGATGGTG-CCGAGACTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTTC
129 TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGCACCAAGGTTGCCGATGGTG-CCGAGGCTCC
* *
58549109 CGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTG
193 CGCACGA-CCAGGGGCCTAGG-TGCCCATGGTG
58549141 TCTGAGGCTC
Statistics
Matches: 399, Mismatches: 50, Indels: 39
0.82 0.10 0.08
Matches are distributed among these distances:
234 23 0.06
235 177 0.44
242 1 0.00
243 1 0.00
244 1 0.00
247 1 0.00
254 25 0.06
255 148 0.37
256 22 0.06
ACGTcount: A:0.17, C:0.32, G:0.36, T:0.16
Consensus pattern (234 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
CGCACGACCAAGCACCAAGGTACCGATGGTGCCCGAGGATCCCGCACAACCAAAGGCCTAGGTTG
CCGATGGTGCCCGAGGCTCCCGTACGACCAAGCACCAAGGTTGCCGATGGTGCCGAGGCTCCCGC
ACGACCAGGGGCCTAGGTGCCCATGGTGCCGAGAGAAGG
Found at i:58550809 original size:29 final size:29
Alignment explanation
Indices: 58550770--58550848 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
58550760 CTTAATAATC
*
58550770 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
58550800 AACTCGCACACTTTGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
58550829 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
58550849 ATCTCACAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:58552792 original size:43 final size:42
Alignment explanation
Indices: 58552731--58552977 Score: 370
Period size: 43 Copynumber: 5.8 Consensus size: 42
58552721 CACAGTACAT
* *
58552731 CCAAGCGCCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGA
1 CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGTACGA
*
58552773 CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA
1 CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGTACGA
* * *
58552816 CCAAGGGCCTAGGTTGCGGATGGTGCCGAGGCTCTCGCACGA
1 CCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGTACGA
*
58552858 CCAAGGGCCTAGGTTGCCGATAGTGCCCGAGGCTCCCGTACGA
1 CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGTACGA
58552901 CCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGTACGA
1 CCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCCCGTACGA
* *
58552944 CCAAGGTCCTAGGTTGCCAATGGTGCCGAGGCTC
1 CCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTC
58552978 TCGCACATCC
Statistics
Matches: 190, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
42 59 0.31
43 131 0.69
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.17
Consensus pattern (42 bp):
CCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGTACGA
Found at i:58552874 original size:85 final size:84
Alignment explanation
Indices: 58552731--58552983 Score: 373
Period size: 85 Copynumber: 3.0 Consensus size: 84
58552721 CACAGTACAT
* *
58552731 CCAAGCGCCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATG
1 CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATG
58552795 GTGTCCGAGGCTCCCGCACGA
65 GTG-CCGAGGCTCCCGCACGA
* * * *
58552816 CCAAGGGCCTAGGTTGCGGATGGTGCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATAG
1 CCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGG
*
58552881 TGCCCGAGGCTCCCGTACGA
66 TG-CCGAGGCTCCCGCACGA
* *
58552901 CCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGTACGACCAAGGTCCTAGGTTGCCAATG
1 CCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATG
*
58552966 GTGCCGAGGCTCTCGCAC
65 GTGCCGAGGCTCCCGCAC
58552984 ATCCTTGCAC
Statistics
Matches: 150, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
85 104 0.69
86 46 0.31
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (84 bp):
CCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGG
TGCCGAGGCTCCCGCACGA
Found at i:58552972 original size:128 final size:127
Alignment explanation
Indices: 58552731--58553020 Score: 413
Period size: 128 Copynumber: 2.3 Consensus size: 127
58552721 CACAGTACAT
* *
58552731 CCAAGCGCCAAGGTGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGG
1 CCAAGCGCCAAGGTGCCGATAGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGG
**
58552796 TGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCGGATGGTGCCGAGGCTCTCGCACGA
66 TGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGCTCTCGCACGA
* *
58552858 CCAAGGGCCTAGGTTGCCGATAGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATG
1 CCAAGCGCCAAGG-TGCCGATAGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATG
* *
58552923 GTG-CTCGAGGCTCCCGTACGACCAAGGTCCTAGGTTGCCAATGGTGCCGAGGCTCTCGCAC-A
65 GTGTC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGCTCTCGCACGA
** * * * *
58552985 TCCTTGCACCACGGTGCCGATGGTGCCCAAGGCTCC
1 -CCAAGCGCCAAGGTGCCGATAGTGCCCGAGGCTCC
58553021 TGCACATCCG
Statistics
Matches: 144, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
127 33 0.23
128 111 0.77
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.17
Consensus pattern (127 bp):
CCAAGCGCCAAGGTGCCGATAGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGG
TGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGCTCTCGCACGA
Found at i:58553036 original size:42 final size:42
Alignment explanation
Indices: 58552727--58553068 Score: 128
Period size: 43 Copynumber: 8.1 Consensus size: 42
58552717 CTGTCACAGT
* * * * *
58552727 ACATCCAAGCGCCAAGGTGCCGATGGTGTCCGAGGCTCCCGT
1 ACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCTGC
* ** * * *
58552769 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
1 AC-ATCCGAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCTGC
* ** * *
58552812 ACGA-CCAAGGGCCTAGGTTGCGGATGGTG-CCGAGGCT-CTCGC
1 AC-ATCCGAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCT-GC
* ** * * * *
58552854 ACGA-CCAAGGGCCTAGGTTGCCGATAGTGCCCGAGGCTCCCGT
1 AC-ATCCGAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCTGC
* ** * * * *
58552897 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGT
1 AC-ATCCGAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCTGC
* ** * *
58552940 ACGA-CCAAGGTCCTAGGTTGCCAATGGTG-CCGAGGCT-CTCGC
1 AC-ATCCGAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCT-GC
** * *
58552982 ACATCCTTGCACCACGGTGCCGATGGTGCCCAAGGCTCCTGC
1 ACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCTGC
**
58553024 ACATCCGAGCACCAAGGTGTTGATGGT-CACCGAGGCTCCTGC
1 ACATCCGAGCACCAAGGTGCCGATGGTGC-CCGAGGCTCCTGC
58553066 ACA
1 ACA
58553069 ACCAAGAGCC
Statistics
Matches: 260, Mismatches: 30, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
41 14 0.05
42 113 0.43
43 132 0.51
44 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (42 bp):
ACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCTGC
Found at i:58553463 original size:24 final size:23
Alignment explanation
Indices: 58553409--58553474 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 23
58553399 TCGGGTTGGC
* *
58553409 TCACCGGAGCACCGTCGAGAAAGC
1 TCACCGGAGCACCGCCG-GAAAGA
* *
58553433 TCGCCGGAGCACCGCCGGAATGGA
1 TCACCGGAGCACCGCCGGAA-AGA
58553457 TCACCGGAGCACCGCCGG
1 TCACCGGAGCACCGCCGG
58553475 GAACCTAACC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 3 0.08
24 33 0.92
ACGTcount: A:0.23, C:0.36, G:0.33, T:0.08
Consensus pattern (23 bp):
TCACCGGAGCACCGCCGGAAAGA
Found at i:58554704 original size:13 final size:13
Alignment explanation
Indices: 58554686--58554710 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58554676 TACTAAATTT
58554686 TCATGGATTCAAG
1 TCATGGATTCAAG
58554699 TCATGGATTCAA
1 TCATGGATTCAA
58554711 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:58558346 original size:34 final size:34
Alignment explanation
Indices: 58558303--58558371 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
58558293 TTTATTCTTT
58558303 ATGGTCACTTTATTCAACTGACGATAGTCGATGC
1 ATGGTCACTTTATTCAACTGACGATAGTCGATGC
58558337 ATGGTCACTTTATTCAACTGACGATAGTCGATGC
1 ATGGTCACTTTATTCAACTGACGATAGTCGATGC
58558371 A
1 A
58558372 CAATCTCATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (34 bp):
ATGGTCACTTTATTCAACTGACGATAGTCGATGC
Found at i:58562321 original size:51 final size:51
Alignment explanation
Indices: 58562205--58562340 Score: 146
Period size: 51 Copynumber: 2.7 Consensus size: 51
58562195 CTACCATCAA
* * *
58562205 ATCTCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAG
1 ATCTCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAG
* * ** * * * * **
58562256 ATATGTAATCTTATAAAATAATATCTTATAATATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAG
*
58562307 ATCTCTAAGATTATAATATCATATCTTTTAAGAT
1 ATCTCTAAGATTATAATATCATATCTTATAAGAT
58562341 CATGTTTCCA
Statistics
Matches: 64, Mismatches: 21, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.40
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAG
Found at i:58563411 original size:96 final size:96
Alignment explanation
Indices: 58563247--58563536 Score: 499
Period size: 96 Copynumber: 3.0 Consensus size: 96
58563237 TCGCTTCTTT
*
58563247 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
58563312 GTCTGCTCCATCATTCCCTTCGATGACAGAC
66 GTCTGCTCCATCATTCCCTTCGATGACAGAC
58563343 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
*
58563408 GTCTGCTCCATCGTTCCCTTCGATGACAGAC
66 GTCTGCTCCATCATTCCCTTCGATGACAGAC
* * *
58563439 TTGTTCCTCTTTGCCCTCTTGGCTTCGGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
1 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
* * * *
58563504 ATCTGCTCGATCATTCCCCTCGATAACAGAC
66 GTCTGCTCCATCATTCCCTTCGATGACAGAC
58563535 TT
1 TT
58563537 CCTCGGACAC
Statistics
Matches: 184, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 184 1.00
ACGTcount: A:0.12, C:0.35, G:0.18, T:0.36
Consensus pattern (96 bp):
TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
GTCTGCTCCATCATTCCCTTCGATGACAGAC
Found at i:58563892 original size:31 final size:30
Alignment explanation
Indices: 58563857--58563924 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 30
58563847 CACATACGCC
58563857 TCTTTCCTCGGACATGGAAGATCCAAGCTTG
1 TCTTTCC-CGGACATGGAAGATCCAAGCTTG
*
58563888 TCTTT-CCGGACATGGAAGATCCTAGCTTG
1 TCTTTCCCGGACATGGAAGATCCAAGCTTG
58563917 TCTTTCCC
1 TCTTTCCC
58563925 TAGACCAAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 27 0.77
30 3 0.09
31 5 0.14
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (30 bp):
TCTTTCCCGGACATGGAAGATCCAAGCTTG
Found at i:58565351 original size:51 final size:51
Alignment explanation
Indices: 58565254--58565384 Score: 145
Period size: 51 Copynumber: 2.6 Consensus size: 51
58565244 ATCAAATCTA
* * * *
58565254 TAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAGATATG
1 TAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATATC
** * * * ** *
58565305 TAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAGATCTC
1 TAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATATC
*
58565356 TAAGATTATAATATCATATCTTTTAAGAT
1 TAAGATTATAATATCATATCTTATAAGAT
58565385 CATGTTTCCA
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (51 bp):
TAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATATC
Found at i:58566635 original size:142 final size:142
Alignment explanation
Indices: 58566379--58566661 Score: 557
Period size: 142 Copynumber: 2.0 Consensus size: 142
58566369 CCTTTTGTTC
58566379 CACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTG
1 CACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTG
58566444 CCGTCCCAGCCAAACTCCCTGCCTGACAATGTCTTCCGCCCTGATCGACCGGTCGAAGCCGACCT
66 CCGTCCCAGCCAAACTCCCTGCCTGACAATGTCTTCCGCCCTGATCGACCGGTCGAAGCCGACCT
58566509 TGGGTCCAAAAT
131 TGGGTCCAAAAT
*
58566521 CACACGAGATTTTTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTG
1 CACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTG
58566586 CCGTCCCAGCCAAACTCCCTGCCTGACAATGTCTTCCGCCCTGATCGACCGGTCGAAGCCGACCT
66 CCGTCCCAGCCAAACTCCCTGCCTGACAATGTCTTCCGCCCTGATCGACCGGTCGAAGCCGACCT
58566651 TGGGTCCAAAA
131 TGGGTCCAAAA
58566662 AGAGGGGCCG
Statistics
Matches: 140, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 140 1.00
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.27
Consensus pattern (142 bp):
CACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTG
CCGTCCCAGCCAAACTCCCTGCCTGACAATGTCTTCCGCCCTGATCGACCGGTCGAAGCCGACCT
TGGGTCCAAAAT
Found at i:58567145 original size:47 final size:47
Alignment explanation
Indices: 58567074--58567166 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
58567064 TGTTTTAATT
* *
58567074 AAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTG
1 AAACAGTCAGATTCCCCTTATCCGTACCAGTTCTGAGTCGACTGTTG
*
58567121 AAACAGTCAGATTCCCCTTATCCGTACCTGTTCTGAGTCGACTGTT
1 AAACAGTCAGATTCCCCTTATCCGTACCAGTTCTGAGTCGACTGTT
58567167 CGTCGCCCGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.31
Consensus pattern (47 bp):
AAACAGTCAGATTCCCCTTATCCGTACCAGTTCTGAGTCGACTGTTG
Found at i:58576465 original size:85 final size:84
Alignment explanation
Indices: 58576371--58577028 Score: 352
Period size: 85 Copynumber: 7.8 Consensus size: 84
58576361 CGTCCTAGGT
* * ** *
58576371 TGCCTATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATACTGCTCGAGGCTCCC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
*
58576436 GCAC-ATCTGAGGCAGCAAGG
66 GCACGA-CAGAGGC-GCAAGG
* ** * *
58576456 TGCCGATGGTG-CCGGAGGCTCCCGCATGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCT
1 TGCCGATGGTGTCC-GAGGCTCCCGCA-CATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
58576519 CCCGCACGACCA-AGG-GCCTACGT
63 CCCGCACGA-CAGAGGCG-C-AAGG
* * *
58576542 TGCCGATGGTGTCCGAGGCTCCCGTACATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCGCCC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
* *
58576607 GCACGACCAGGGGC-CTAGG
66 GCACGA-CAGAGGCGCAAGG
* * ** * * *
58576626 TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATAGTGCCCAAGGCT
1 -TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
58576690 CCCGCACGACCAGGGGC-CTAGG
63 CCCGCACGA-CAGAGGCGCAAGG
* * * * * ** * *
58576712 TTGCTGATAGTG-CCGAGGCTCTCGTACGA-CCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCT
1 -TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
58576775 CCAGTAC-ATCCA-AGTGC-CAAGG
63 CCCGCACGA--CAGAG-GCGCAAGG
* ** * *
58576797 TGCCGATGGTGTCCAAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCGGATGGTG-CCGAGGCTC
1 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTC
* *
58576860 TCGCACGACCA-ATGGC-CTAGG
64 CCGCACGA-CAGA-GGCGCAAGG
* * ** * *
58576881 TTGCCGATGGTGCCCGAGGCTCCCGTACGA-CCAAGGTCCTAGGTTGCCAATGGTG-CCGAGGCT
1 -TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* *** *
58576944 CTCGCAC-ATC-CTTGCACCAAGG
63 CCCGCACGA-CAGAGGC-GCAAGG
* * * * *
58576966 TACCGATGGTGCCCAAGGCTCCCGCACATCCGAGCACCAAGGTGCTGATGGT-CACCGAGGCTC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGC-CCGAGGCTC
58577029 TTGTACAACC
Statistics
Matches: 471, Mismatches: 77, Indels: 51
0.79 0.13 0.09
Matches are distributed among these distances:
83 11 0.02
84 81 0.17
85 264 0.56
86 111 0.24
87 4 0.01
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.17
Consensus pattern (84 bp):
TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
GCACGACAGAGGCGCAAGG
Found at i:58576584 original size:128 final size:127
Alignment explanation
Indices: 58576364--58577068 Score: 649
Period size: 128 Copynumber: 5.5 Consensus size: 127
58576354 CATCCAACGT
* * ** * * **
58576364 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATACTG-CT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTC-
* * * *
58576426 CGAGGCTCCCGCACATCTGAGGCAGCAAGGTGCCGATGGTGCCGGAGGCTCCCGCATGACCAAGG
64 CGAGGCTCCCGCACATC-CAAGCACCAAGGTGCCGATGGTGCC-GAGGCTCCCGCACGACCAAGG
58576491 G
127 G
* *
58576492 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTACGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
* * * *
58576557 AGGCTCCCGTACATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCGCCCGCACGACCAGGGG
66 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
* * * *
58576620 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATAGTGCCCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
* ** * * * * * *
58576685 AGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCTGATAGTGCCGAGGCTCTCGTACGACCAGGGG
66 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
* * * * *
58576748 CCTAGGTTGCCGATGGTGTCCGAGGCTCCAGTAC-ATCCAAGTGCCAAGG-TGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCC
* ** * * * *
58576811 AAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCGGATGGTGCCGAGGCTCTCGCACGACCAATGG
65 GAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
* * *
58576875 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGTCCTAGGTTGCCAATGGTG-CCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
* ** * * * **
58576939 AGGCTCTCGCACATCCTTGCACCAAGGTACCGATGGTGCCCAAGGCTCCCGCAC-ATCCGAGCA
66 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGGG
* * ** * * * * *
58577002 CCAAGG-TGCTGATGGT-CACCGAGGCTCTTGTACAACCAAGAGCCTAGTTTACCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCC
58577065 GAGG
65 GAGG
58577069 TGTCCGAGGC
Statistics
Matches: 483, Mismatches: 80, Indels: 29
0.82 0.14 0.05
Matches are distributed among these distances:
125 1 0.00
126 54 0.11
127 161 0.33
128 229 0.47
129 37 0.08
130 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (127 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
Found at i:58576601 original size:42 final size:43
Alignment explanation
Indices: 58576364--58577068 Score: 566
Period size: 43 Copynumber: 16.6 Consensus size: 43
58576354 CATCCAACGT
* * *
58576364 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCG
* * ** * **
58576407 CCAAGG-TGCCAATACTGCTCGAGGCTCCCGCAC-ATCTGAG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCG
* * * *
58576448 CAGCAAGG-TGCCGATGGTGCCGGAGGCTCCCGCATGACCAAGGG
1 C--CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
* *
58576492 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
* * * *
58576535 CCTACGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCG
** * * *
58576578 CGAAGG-TGCCGATGGTGCCCGAGGCGCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
* *
58576620 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
* * * *
58576663 CCTAGGTTGCCGATAGTGCCCAAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
* * * * * *
58576706 CCTAGGTTGCTGATAGTG-CCGAGGCTCTCGTACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
* * * *
58576748 CCTAGGTTGCCGATGGTGTCCGAGGCTCCAGTAC-ATCCAAGTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCG
* * * *
58576791 CCAAGG-TGCCGATGGTGTCCAAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
* *
58576833 CCTAGGTTGCGGATGGTG-CCGAGGCTCTCGCACGACCAATG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GCG
*
58576875 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAG-G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
* * ** *
58576917 TCCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCA
1 -CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCG
* * * * *
58576960 CCAAGG-TACCGATGGTGCCCAAGGCTCCCGCAC-ATCCGAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCG
* * ** * * *
58577002 CCAAGG-TGCTGATGGT-CACCGAGGCTCTTGTACAACCAAGAG
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGCG
* * *
58577044 CCTAGTTTACCGATGGTGTCCGAGG
1 CCTAGGTTGCCGATGGTGCCCGAGG
58577069 TGTCCGAGGC
Statistics
Matches: 550, Mismatches: 90, Indels: 44
0.80 0.13 0.06
Matches are distributed among these distances:
41 12 0.02
42 250 0.45
43 285 0.52
44 3 0.01
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG
Found at i:58577400 original size:24 final size:25
Alignment explanation
Indices: 58577373--58577443 Score: 92
Period size: 24 Copynumber: 2.9 Consensus size: 25
58577363 TTTCGGGATG
58577373 GCTCACCGGAGCACCGCCGGGAA-A
1 GCTCACCGGAGCACCGCCGGGAATA
* *
58577397 GCTCACCGGAGCACCGTC-GGAATG
1 GCTCACCGGAGCACCGCCGGGAATA
* *
58577421 GATCGCCGGAGCACCGCCGGGAA
1 GCTCACCGGAGCACCGCCGGGAA
58577444 CCTAACCGGC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
23 4 0.10
24 32 0.80
25 4 0.10
ACGTcount: A:0.23, C:0.35, G:0.35, T:0.07
Consensus pattern (25 bp):
GCTCACCGGAGCACCGCCGGGAATA
Found at i:58589227 original size:96 final size:96
Alignment explanation
Indices: 58589049--58589242 Score: 257
Period size: 96 Copynumber: 2.0 Consensus size: 96
58589039 TCACTTCTTT
*
58589049 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
* ** * *
58589114 GTCTGTTTCATCGTTCCC-TCCGATGACAGAC
66 ATCTGACTCATCATTCCCAT-CGATAACAGAC
* * * **
58589145 TTGCTCCTTTTTGTCCTCTTGGCTTCGGCTTTTTCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
58589210 ATCT-ACTCGATCATTCCCATCGATAACAGAC
66 ATCTGACTC-ATCATTCCCATCGATAACAGAC
58589241 TT
1 TT
58589243 CCTCGGACAC
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
95 2 0.02
96 82 0.96
97 1 0.01
ACGTcount: A:0.13, C:0.32, G:0.18, T:0.37
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
ATCTGACTCATCATTCCCATCGATAACAGAC
Found at i:58595851 original size:43 final size:43
Alignment explanation
Indices: 58595827--58596863 Score: 1027
Period size: 43 Copynumber: 24.6 Consensus size: 43
58595817 CATCCAATGT
* * **
58595827 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
58595870 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCGAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* * *
58595913 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACCAATGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
58595955 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCA-GAACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG-ACCAAGGG
* * **
58595998 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** *
58596041 CGAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
58596083 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG----A---
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58596119 -CTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
58596160 CCTAGGTTGCTGATGGTACCCGAGGATCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58596203 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGA-CAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58596245 CCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58596288 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGA-CAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58596330 CCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
58596373 CCTAGGTTGCTGATGGTG-CCGAGGCTCTCGTAGGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
58596415 CCTAGGTTGCCGATGGTG-CCGAGACTCCCGTACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * *
58596457 CCTAGGTTGCCGGTGGTGTTCGAGGCTTCTGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
58596500 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
58596543 CCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCGAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
58596585 CCTAAGTTGCCGATGGTGTCTGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
58596628 CCTAGGTTGCGGATGGTG-TCGAGGCTCTAGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
58596670 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** **
58596713 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * **
58596755 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCGAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * *
58596797 CCAAGG-TGCTAATGGT-CACCGAGGCTCCTGCACAACCAAGAG
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGG
* *
58596839 CCTAGTTTGCCGATGGTGTCCGAGG
1 CCTAGGTTGCCGATGGTGCCCGAGG
58596864 TTTTCGAGGC
Statistics
Matches: 849, Mismatches: 115, Indels: 60
0.83 0.11 0.06
Matches are distributed among these distances:
34 27 0.03
35 5 0.01
41 12 0.01
42 380 0.45
43 424 0.50
44 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:58595892 original size:85 final size:85
Alignment explanation
Indices: 58595768--58596863 Score: 800
Period size: 85 Copynumber: 13.0 Consensus size: 85
58595758 TATTCTTTAG
* * ** * ** * *
58595768 CCCGCACATCCGAGGCACCAGGGTGCCCCTGTTGTTCGAGGCAT-CCGCACATCCAATGTCCTAG
1 CCCGCACATCC-AAGCACCAAGGTGCCGATGGTGCCCGAGGC-TCCCGCACATCCAAGGGCCTAG
* *
58595832 GTTGCCTATGGTGTCCGAGGCT
64 GTTGCCGATGGTGCCCGAGGCT
* * * * * *
58595854 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGAGGCACCAAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGG-GCCTAGG
58595919 -TGCCGATGGTGCCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
* * * * * *
58595939 CCCGCATGA-CCAATG-GCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAGAACCAAGGGCCTA
1 CCCGCA-CATCCAA-GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTA
*
58596002 GGTTGCCGATGGTGTCCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
* * *
58596025 CCCGTACATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG
58596089 TTGCCGATGGTGCCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
* * *
58596110 CCCG--CA--C--G-A-CTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAGGGGCCTAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG
* * *
58596166 TTGCTGATGGTACCCGAGGAT
65 TTGCCGATGGTGCCCGAGGCT
* ** * * *
58596187 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGA--CAGGGGCCTA
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTA
*
58596249 GGTTGTCGATGGTGCCCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
* ** * * *
58596272 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGA--CAGGGGCCTA
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTA
*
58596334 GGTTGTCGATGGTGCCCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
* ** * * * * * *
58596357 CCCGCACGA-CCAGGGGCCTAGGTTGCTGATGGTG-CCGAGGCTCTCGTAGGA-CCAGGGGCCTA
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCA-CATCCAAGGGCCTA
*
58596419 GGTTGCCGATGGTG-CCGAGACT
63 GGTTGCCGATGGTGCCCGAGGCT
* * ** * * ** * *
58596441 CCCGTACGA-CCAGGGGCCTAGGTTGCCGGTGGTGTTCGAGGCTTCTGCACATCCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAG
*
58596505 GTTGCCGATGGTGTCCGAGGCT
64 GTTGCCGATGGTGCCCGAGGCT
* * * * * *
58596527 CCCGTACATCCAAGCGCCAAGGTGCCGATGGTGTCCGAGGCTCCCGTACGA-CCGAGGGCCTAAG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG
* *
58596591 TTGCCGATGGTGTCTGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
** * * * **
58596612 CCCGCACGA-CCAAGGGCCTAGGTTGCGGATGGTG-TCGAGGCTCTAGCACGA-CCAAGGGCCTA
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTA
58596674 GGTTGCCGATGGTGCCCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
* ** * * * ** ** *
58596697 CCCGTACGA-CCAAGGTCCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCACATCCTTGCACCAAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAG
*
58596760 G-TGCCGATGGTGCCCAAGGCT
64 GTTGCCGATGGTGCCCGAGGCT
* ** * * * *
58596781 CCCGCACATCCGAGCACCAAGGTGCTAATGGT-CACCGAGGCTCCTGCACAACCAAGAGCCTAGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGC-CCGAGGCTCCCGCACATCCAAGGGCCTAGG
*
58596845 TTGCCGATGGTGTCCGAGG
65 TTGCCGATGGTGCCCGAGG
58596864 TTTTCGAGGC
Statistics
Matches: 861, Mismatches: 117, Indels: 65
0.83 0.11 0.06
Matches are distributed among these distances:
77 66 0.08
78 1 0.00
79 2 0.00
80 1 0.00
81 2 0.00
83 13 0.02
84 108 0.13
85 526 0.61
86 142 0.16
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (85 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGGT
TGCCGATGGTGCCCGAGGCT
Found at i:58596788 original size:42 final size:41
Alignment explanation
Indices: 58596720--58596830 Score: 123
Period size: 42 Copynumber: 2.7 Consensus size: 41
58596710 GGTCCTAGGT
* * **
58596720 TGCCAATGGTGCCGAGGCTCTCGCACATCCTTGCACCAAGG
1 TGCCAATGGTGCCAAGGCTCCCGCACATCCGAGCACCAAGG
*
58596761 TGCCGATGGTGCCCAAGGCTCCCGCACATCCGAGCACCAAGG
1 TGCCAATGGTG-CCAAGGCTCCCGCACATCCGAGCACCAAGG
* * * *
58596803 TGCTAATGGTCACCGAGGCTCCTGCACA
1 TGCCAATGGT-GCCAAGGCTCCCGCACA
58596831 ACCAAGAGCC
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 10 0.17
42 48 0.83
ACGTcount: A:0.21, C:0.35, G:0.27, T:0.17
Consensus pattern (41 bp):
TGCCAATGGTGCCAAGGCTCCCGCACATCCGAGCACCAAGG
Found at i:58601056 original size:35 final size:35
Alignment explanation
Indices: 58601017--58601088 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
58601007 TATCTCCGGA
*
58601017 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
58601052 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
58601087 GC
1 GC
58601089 GATCTTAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:58604595 original size:47 final size:47
Alignment explanation
Indices: 58604495--58604960 Score: 817
Period size: 47 Copynumber: 9.9 Consensus size: 47
58604485 TAGTATGGCG
* * *
58604495 TAATGGCTGATTTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATTAGGCC
58604544 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
58604591 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
58604638 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
58604685 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
58604732 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
58604779 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
58604826 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
*
58604873 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTA-GGCC
* * * * *
58604920 GAGTGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
58604961 AAGTCCCAAA
Statistics
Matches: 406, Mismatches: 9, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
46 1 0.00
47 378 0.93
49 27 0.07
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.32
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
Found at i:58606218 original size:27 final size:27
Alignment explanation
Indices: 58606187--58606240 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
58606177 TGCAATTTTG
58606187 AAAGAGTGGTATGACTATAAATGTGAT
1 AAAGAGTGGTATGACTATAAATGTGAT
*
58606214 AAAGAGTGTTATGACTATAAATGTGAT
1 AAAGAGTGGTATGACTATAAATGTGAT
58606241 TTTTGTATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (27 bp):
AAAGAGTGGTATGACTATAAATGTGAT
Found at i:58606607 original size:40 final size:40
Alignment explanation
Indices: 58606373--58606595 Score: 311
Period size: 40 Copynumber: 5.6 Consensus size: 40
58606363 GAGTGAAATG
* * *
58606373 TCCGGGCTAAATCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
58606413 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58606453 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
58606493 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
58606533 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58606573 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
58606596 ATCATGCTGG
Statistics
Matches: 163, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 163 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:58607997 original size:50 final size:50
Alignment explanation
Indices: 58607922--58608022 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
58607912 ATTTTTGGGG
58607922 ACAAAAATTTCTTAAGTGGGGAAGAGTTGTGACACCCCTAAAGTGACCCT
1 ACAAAAATTTCTTAAGTGGGGAAGAGTTGTGACACCCCTAAAGTGACCCT
58607972 ACAAAAATTTCTTAAGTGGGGAAGAGTTGTGACACCCCTAAAGTGACCCT
1 ACAAAAATTTCTTAAGTGGGGAAGAGTTGTGACACCCCTAAAGTGACCCT
58608022 A
1 A
58608023 GTCGAAAAGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (50 bp):
ACAAAAATTTCTTAAGTGGGGAAGAGTTGTGACACCCCTAAAGTGACCCT
Found at i:58609888 original size:47 final size:47
Alignment explanation
Indices: 58609835--58610245 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
58609825 TTAGGATTCT
58609835 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58609882 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58609929 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58609976 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58610023 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58610070 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58610117 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
58610164 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
58610211 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
58610246 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:58610420 original size:37 final size:37
Alignment explanation
Indices: 58610364--58610442 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
58610354 CCGAGCTCTA
* * *
58610364 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
58610401 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
58610438 AAGAC
1 AAGAC
58610443 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:58612256 original size:45 final size:45
Alignment explanation
Indices: 58612207--58612315 Score: 136
Period size: 43 Copynumber: 2.5 Consensus size: 45
58612197 AGTGTTATAG
58612207 TATCTTTCAACTATAGTCTTGATTAT-TACT-GATGTAATGCCATAA
1 TATCTTTCAACTATAGTCTT-ATT-TCTACTAGATGTAATGCCATAA
* * * *
58612252 TATCTTTCAAC--TGGTCTTATTTCTATTAGATTTAATGCCATAG
1 TATCTTTCAACTATAGTCTTATTTCTACTAGATGTAATGCCATAA
58612295 TATCTTTCAACTATAGTCTTA
1 TATCTTTCAACTATAGTCTTA
58612316 CACATTTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.02
42 6 0.11
43 30 0.55
45 18 0.33
ACGTcount: A:0.28, C:0.17, G:0.10, T:0.45
Consensus pattern (45 bp):
TATCTTTCAACTATAGTCTTATTTCTACTAGATGTAATGCCATAA
Found at i:58612344 original size:45 final size:44
Alignment explanation
Indices: 58612289--58612403 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
58612279 AGATTTAATG
* * *
58612289 CCATAGTATCTTTCAACTATAGTCTTACACATTTTTGGTTTAGTA
1 CCATAGTATCTTTCAACTATGGTCTTACACA-TTCTAGTTTAGTA
* ** * ** *
58612334 CCATTGTATCTCCCAATTATGGTCTTATTCATTCTAGTTTAGTG
1 CCATAGTATCTTTCAACTATGGTCTTACACATTCTAGTTTAGTA
*
58612378 CCACAGTATCTTTCAACTATGGTCTT
1 CCATAGTATCTTTCAACTATGGTCTT
58612404 TCTAATTTCG
Statistics
Matches: 55, Mismatches: 15, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
44 31 0.56
45 24 0.44
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.43
Consensus pattern (44 bp):
CCATAGTATCTTTCAACTATGGTCTTACACATTCTAGTTTAGTA
Found at i:58614874 original size:46 final size:45
Alignment explanation
Indices: 58614807--58614926 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 45
58614797 TGTACGCTAA
*
58614807 TGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGAAGTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGACTACGAGAAGT--GCCAG
* *
58614853 TGTAAGACATGTCTGGGACATGCATC-GACTACGAGATGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGACTACGAGAAGTGCCAG
* *
58614897 TGTAAGACCATGTCTAGGAAATGGCATCGG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGG
58614927 GACGGATATG
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
44 11 0.17
45 15 0.23
46 38 0.58
47 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGGACTACGAGAAGTGCCAG
Found at i:58616281 original size:20 final size:21
Alignment explanation
Indices: 58616242--58616281 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
58616232 GTTATAATGA
58616242 CCACACGGACGTGTTGCCCTT
1 CCACACGGACGTGTTGCCCTT
58616263 CCACACGGACGTG-TGCCCT
1 CCACACGGACGTGTTGCCCT
58616282 GTTTCAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGGACGTGTTGCCCTT
Found at i:58616950 original size:20 final size:20
Alignment explanation
Indices: 58616927--58616988 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
58616917 TGTTTATCTG
58616927 CAATACTAGTGGCTTGTCCA
1 CAATACTAGTGGCTTGTCCA
* * * *
58616947 CAATACTAGTAGTTTATCTA
1 CAATACTAGTGGCTTGTCCA
* *
58616967 CAATACTTGTGACTTGTCCA
1 CAATACTAGTGGCTTGTCCA
58616987 CA
1 CA
58616989 TCTTACTGAC
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (20 bp):
CAATACTAGTGGCTTGTCCA
Found at i:58617088 original size:42 final size:42
Alignment explanation
Indices: 58616924--58617076 Score: 177
Period size: 42 Copynumber: 3.7 Consensus size: 42
58616914 GGTTGTTTAT
* * * *
58616924 CTGCAATACTAGTGGCTTGTCCACA-A-TACTAGTAGTTTAT
1 CTGCAATACTGGTGGCTTGTCCACATATTACTAGCAGCTTAA
* * * *
58616964 CTACAATACTTGTGACTTGTCCACATCTTACT-GACAGCTTAA
1 CTGCAATACTGGTGGCTTGTCCACATATTACTAG-CAGCTTAA
* *
58617006 TTGCAATACTGGTGGCTTGTCCACATATTTCTAGCAGCTTAA
1 CTGCAATACTGGTGGCTTGTCCACATATTACTAGCAGCTTAA
*
58617048 CTGCAATACTGGTGGTTTGTCCACATATT
1 CTGCAATACTGGTGGCTTGTCCACATATT
58617077 TCTGGTAGCT
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 22 0.23
41 1 0.01
42 70 0.74
43 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (42 bp):
CTGCAATACTGGTGGCTTGTCCACATATTACTAGCAGCTTAA
Found at i:58617106 original size:33 final size:33
Alignment explanation
Indices: 58617054--58617120 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
58617044 TTAACTGCAA
* * * *
58617054 TACTGGTGGTTTGTCCACATATTTCTGGTAGCT
1 TACTAGTGATTTGTACACATATTTCTGGGAGCT
58617087 TACTAGTGATTTGTACACATATTTCTGGGAGCT
1 TACTAGTGATTTGTACACATATTTCTGGGAGCT
58617120 T
1 T
58617121 GCCTACAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.42
Consensus pattern (33 bp):
TACTAGTGATTTGTACACATATTTCTGGGAGCT
Found at i:58617162 original size:75 final size:76
Alignment explanation
Indices: 58617022--58617167 Score: 186
Period size: 75 Copynumber: 1.9 Consensus size: 76
58617012 TACTGGTGGC
* * * * *
58617022 TTGTCCACATATTTCTAGCAGCTTAACTGCAATACTGGTGGTTTGTCCACATATTTCTGGTAGCT
1 TTGTACACATATTTCTAGCAGCTTAACTACAATACTGGTGGCTTGTCCACATATTACTGGCAGCT
58617087 T-ACTAGTGAT
66 TGACTAGTGAT
* * ** * *
58617097 TTGTACACATATTTCTGGGAGCTTGCCTACAATACTTGTGGCTTGTCCACATCTTACTGGCAGCT
1 TTGTACACATATTTCTAGCAGCTTAACTACAATACTGGTGGCTTGTCCACATATTACTGGCAGCT
58617162 TGACTA
66 TGACTA
58617168 CAATTACTAG
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
75 55 0.93
76 4 0.07
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (76 bp):
TTGTACACATATTTCTAGCAGCTTAACTACAATACTGGTGGCTTGTCCACATATTACTGGCAGCT
TGACTAGTGAT
Found at i:58617190 original size:43 final size:43
Alignment explanation
Indices: 58617086--58617190 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 43
58617076 TTCTGGTAGC
** * * * *
58617086 TTACTAGTGATTTGTACACATATTTCTGGGAGCTTGCCTACAA
1 TTACTAGTGGCTTGTCCACATATTACTGGCAGCTTGACTACAA
* *
58617129 -TACTTGTGGCTTGTCCACATCTTACTGGCAGCTTGACTACAA
1 TTACTAGTGGCTTGTCCACATATTACTGGCAGCTTGACTACAA
58617171 TTACTAGTGGCTTGTCCACA
1 TTACTAGTGGCTTGTCCACA
58617191 AGCTGGTGTG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 34 0.65
43 18 0.35
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (43 bp):
TTACTAGTGGCTTGTCCACATATTACTGGCAGCTTGACTACAA
Done.