Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 180 of 276
Found at i:59216821 original size:22 final size:22
Alignment explanation
Indices: 59216795--59216839 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
59216785 CTAAACATTT
59216795 CCTTAGTCTAATAGGAAATGAG
1 CCTTAGTCTAATAGGAAATGAG
*
59216817 CCTTAGTCTAGTAGGAAATGAG
1 CCTTAGTCTAATAGGAAATGAG
59216839 C
1 C
59216840 AAATCGATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (22 bp):
CCTTAGTCTAATAGGAAATGAG
Found at i:59225960 original size:20 final size:20
Alignment explanation
Indices: 59225932--59225971 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
59225922 GATAACTCAA
* *
59225932 ATTTTTTTTTGAAAACATAG
1 ATTTATTTTTCAAAACATAG
*
59225952 ATTTATTTTTCAAAATATAG
1 ATTTATTTTTCAAAACATAG
59225972 GGGACAAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (20 bp):
ATTTATTTTTCAAAACATAG
Found at i:59226567 original size:228 final size:227
Alignment explanation
Indices: 59226127--59226593 Score: 682
Period size: 228 Copynumber: 2.1 Consensus size: 227
59226117 CACGGCCAAC
* ** * * * *
59226127 CACACGCTCGTGTAACCAGCCCGTGTGCCCTTAGAAATGCCACACATACCCATGTTCCAGGCCAT
1 CACACGCCCGTGCGACCAACCCGTCTGCCCTTAGAAATGCCACACACACCCATGTGCCAGGCCAT
* * *
59226192 GTGATAGGCCATGCCAAAACTGTAGGGTATATTGACTTATGCTACACGGCCAAGTTACATGCCAG
66 GTGATAGGCCATGCCAAAACTGTAGGGTATACTGACTTATGCCACACGGCCAAGTCACATGCCAG
* *
59226257 TGTGCTGGGCCGTGTAGAGCATACTGACTTGGTTTCTAATTAAACACCAGGTGACACACGACCGT
131 TGTGCTGGGCCGTATAGAGCATACTGACTTGGTTTCTAATTAAACACCAGGGGACACACGACCGT
* * * * *
59226322 GTCACTTGACTGAGTGTCACATACGGTTGAGA
196 GTCACCTAACCGAGTGTCACACACGGCTGAGA
* * * *
59226354 CACATGCCCGTGCGACCAACCCGTCTGCCCTTAGAAATGGCCACACACGCCCGTGTGCCAGGCCG
1 CACACGCCCGTGCGACCAACCCGTCTGCCCTTAGAAAT-GCCACACACACCCATGTGCCAGGCCA
* **
59226419 TGTGCTAGGCTGTGCCAAAACTGTAGGGTATACTGACTTATGCCACACGGCCAAGTCACATGCCA
65 TGTGATAGGCCATGCCAAAACTGTAGGGTATACTGACTTATGCCACACGGCCAAGTCACATGCCA
* *
59226484 GTGTGCTGGGCCGTATGGAGCATACTGACTTGGTTTCTAATTAAACACCAGGGGACACACGATCG
130 GTGTGCTGGGCCGTATAGAGCATACTGACTTGGTTTCTAATTAAACACCAGGGGACACACGACCG
*
59226549 TGTCACCTAACCGAGTGTCACACATGGCTGAGA
195 TGTCACCTAACCGAGTGTCACACACGGCTGAGA
59226582 CACACGCCCGTG
1 CACACGCCCGTG
59226594 TCTTTACCCG
Statistics
Matches: 211, Mismatches: 28, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
227 32 0.15
228 179 0.85
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (227 bp):
CACACGCCCGTGCGACCAACCCGTCTGCCCTTAGAAATGCCACACACACCCATGTGCCAGGCCAT
GTGATAGGCCATGCCAAAACTGTAGGGTATACTGACTTATGCCACACGGCCAAGTCACATGCCAG
TGTGCTGGGCCGTATAGAGCATACTGACTTGGTTTCTAATTAAACACCAGGGGACACACGACCGT
GTCACCTAACCGAGTGTCACACACGGCTGAGA
Found at i:59231129 original size:21 final size:21
Alignment explanation
Indices: 59231105--59231146 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
59231095 TTGAACCTAG
59231105 GACCTAGAGAAATTAATTAAA
1 GACCTAGAGAAATTAATTAAA
59231126 GACCTAGAGAAATTAATTAAA
1 GACCTAGAGAAATTAATTAAA
59231147 CACTTAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (21 bp):
GACCTAGAGAAATTAATTAAA
Found at i:59235086 original size:96 final size:93
Alignment explanation
Indices: 59234967--59235462 Score: 362
Period size: 96 Copynumber: 5.4 Consensus size: 93
59234957 TTTAAATTAA
* *
59234967 ATTTTAGGTTTTT-ATATCTTAATATTAAGTTTAAACATTAAATTAATTAGATTTTTATTTTAGG
1 ATTTTAGATTTTTAATATTTTAATATTAAGTTTAAA-ATT-AATT-ATTAGATTTTTATTTTAGG
*
59235031 TTTTTATATTAAGTTTTAAATTAATTTTTCG
63 TTTTGATATTAAGTTTTAAATTAATTTTTCG
* * ** ** *
59235062 ATTTTCGATTTTTAATATTTTAATATTAAGTAT-ATTTTTTTCTTTTAGA-TTTTAGGTTTTAGG
1 ATTTTAGATTTTTAATATTTTAATATTAAGTTTAAAATTAAT-TATTAGATTTTTA--TTTTAGG
*
59235125 TTTTGATATT-AGATTTTAAATTAGATATTTCG
63 TTTTGATATTAAG-TTTTAAATTA-ATTTTTCG
** * * * * * * * *
59235157 AAATTATATTTTTAATATTTTAATATTAAATTTTAAATTAGTCATTTATATTTTAGATTTTGGGT
1 ATTTTAGATTTTTAATATTTTAATATTAAGTTTAAAATTAATTA-TTAGATTTT-TATTTTAGGT
* * * *
59235222 TTTGACATTAGGTTTTAAATTAAAATTTTCA
64 TTTGATATTAAGTTTTAAATT-AATTTTTCG
* *
59235253 ATTTTAGATTTTTAAGATTTTAATATTAA-TTT---A-T--TT-TTAG------ATTTTAGATTT
1 ATTTTAGATTTTTAATATTTTAATATTAAGTTTAAAATTAATTATTAGATTTTTATTTTAGGTTT
* *
59235304 TGATATTAAGTTTTAAATTATATCTTTGG
66 TGATATTAAGTTTTAAATTA-ATTTTTCG
* * * * * * *
59235333 ATTTTATATTTTTAATATTTTAATGTTAAGTTTTAAATTAAACTTTTTAGATTTTAAATGTTGGG
1 ATTTTAGATTTTTAATATTTTAATATTAAGTTTAAAATT-AA-TTATTAGATTTT-TATTTTAGG
* *
59235398 TTTTGATATTAGGTTTTAAATTAAATTGTTCG
63 TTTTGATATTAAGTTTTAAATT-AATTTTTCG
* *
59235430 ATTTTATATTTTTAGTATTTTAATATTAAGTTT
1 ATTTTAGATTTTTAATATTTTAATATTAAGTTT
59235463 TTAGATTTTA
Statistics
Matches: 313, Mismatches: 57, Indels: 60
0.73 0.13 0.14
Matches are distributed among these distances:
79 1 0.00
80 56 0.18
81 3 0.01
84 1 0.00
85 1 0.00
87 3 0.01
89 3 0.01
90 4 0.01
91 1 0.00
92 6 0.02
93 8 0.03
94 29 0.09
95 49 0.16
96 79 0.25
97 67 0.21
98 2 0.01
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.56
Consensus pattern (93 bp):
ATTTTAGATTTTTAATATTTTAATATTAAGTTTAAAATTAATTATTAGATTTTTATTTTAGGTTT
TGATATTAAGTTTTAAATTAATTTTTCG
Found at i:59235292 original size:80 final size:81
Alignment explanation
Indices: 59235200--59235361 Score: 211
Period size: 80 Copynumber: 2.0 Consensus size: 81
59235190 TAAATTAGTC
* * *
59235200 ATTTATATTTTAGATTTTGGGTTTTGACATTAGGTTTTAAATTAAAAT-TTTCAATTTTAGATTT
1 ATTTATATTTTAGATTTTAGATTTTGACATTAAGTTTTAAATT-AAATCTTTCAATTTTAGATTT
59235264 TTAAGATTTTAATATTA
65 TTAAGATTTTAATATTA
* * ** *
59235281 ATTTAT-TTTTAGATTTTAGATTTTGATATTAAGTTTTAAATTATATCTTTGGATTTTATATTTT
1 ATTTATATTTTAGATTTTAGATTTTGACATTAAGTTTTAAATTAAATCTTTCAATTTTAGATTTT
* *
59235345 TAATATTTTAATGTTA
66 TAAGATTTTAATATTA
59235361 A
1 A
59235362 GTTTTAAATT
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 3 0.04
80 61 0.87
81 6 0.09
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (81 bp):
ATTTATATTTTAGATTTTAGATTTTGACATTAAGTTTTAAATTAAATCTTTCAATTTTAGATTTT
TAAGATTTTAATATTA
Found at i:59235343 original size:176 final size:173
Alignment explanation
Indices: 59235111--59235570 Score: 593
Period size: 176 Copynumber: 2.6 Consensus size: 173
59235101 TTCTTTTAGA
* * **
59235111 TTTTAGGTTTTAGGTTTTGATATT-AGATTTTAAATTAGATATTTCGAAATTATATTTTTAATAT
1 TTTTAGATTTTAGGTTTTGATATTAAG-TTTTAAATTAGATCTTTCGATTTTATATTTTTAATAT
* *
59235175 TTTAATATTAAATTTTAAATTAGTCATTTATATTTTAGATTTTGGGTTTTGACATTAGGTTTTAA
65 TTTAATATTAAGTTTTAAATTAGTCTTTTATATTTTAGATTTTGGGTTTTGACATTAGGTTTTAA
59235240 ATTAAAATT-TTCAATTTTAGATTTTTAAG-ATTTTAATATTAATTTAT
130 ATT-AAATTGTTCAATTTTAGATTTTT-AGTATTTTAATATTAA---AT
* * *
59235287 TTTTAGATTTTAGATTTTGATATTAAGTTTTAAATTATATCTTTGGATTTTATATTTTTAATATT
1 TTTTAGATTTTAGGTTTTGATATTAAGTTTTAAATTAGATCTTTCGATTTTATATTTTTAATATT
* ** * * * *
59235352 TTAATGTTAAGTTTTAAATTAAACTTTTTAGATTTTAAATGTTGGGTTTTGATATTAGGTTTTAA
66 TTAATATTAAGTTTTAAATTAGTC-TTTTATATTTTAGATTTTGGGTTTTGACATTAGGTTTTAA
* * *
59235417 ATTAAATTGTTCGATTTTATATTTTTAGTATTTTAATATTAAGT
130 ATTAAATTGTTCAATTTTAGATTTTTAGTATTTTAATATTAAAT
* * *
59235461 TTTTAGATTTTAGGTTTTGATATTAGGTTTTAAATTAGATCTTTCAATTTTATATTTTTAAAATT
1 TTTTAGATTTTAGGTTTTGATATTAAGTTTTAAATTAGATCTTTCGATTTTATATTTTTAATATT
* *
59235526 TTAATATTAAGTGTTAAATTAGATTTTTTTATATTTTAAGATTTT
66 TTAATATTAAGTTTTAAATTAG--TCTTTTATATTTT-AGATTTT
59235571 AAGATTTTTT
Statistics
Matches: 244, Mismatches: 33, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
174 79 0.32
175 10 0.04
176 87 0.36
177 68 0.28
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.56
Consensus pattern (173 bp):
TTTTAGATTTTAGGTTTTGATATTAAGTTTTAAATTAGATCTTTCGATTTTATATTTTTAATATT
TTAATATTAAGTTTTAAATTAGTCTTTTATATTTTAGATTTTGGGTTTTGACATTAGGTTTTAAA
TTAAATTGTTCAATTTTAGATTTTTAGTATTTTAATATTAAAT
Found at i:59235362 original size:49 final size:48
Alignment explanation
Indices: 59235294--59235463 Score: 175
Period size: 49 Copynumber: 3.5 Consensus size: 48
59235284 TATTTTTAGA
* * *
59235294 TTTTAG-ATTTTGATATTAAGTTTTAAATTATATCTTTGGATTTTATAT
1 TTTTAGTATTTTAATATTAAGTTTTAAATTAAAT-TTTAGATTTTATAT
* * *
59235342 TTTTAATATTTTAATGTTAAGTTTTAAATTAAACTTTTTAGATTTTA-AA
1 TTTTAGTATTTTAATATTAAGTTTTAAATTAAA--TTTTAGATTTTATAT
* ** * * *
59235391 TGTT-GGGTTTTGATATTAGGTTTTAAATTAAATTGTTCGATTTTATAT
1 TTTTAGTATTTTAATATTAAGTTTTAAATTAAATT-TTAGATTTTATAT
59235439 TTTTAGTATTTTAATATTAAGTTTT
1 TTTTAGTATTTTAATATTAAGTTTT
59235464 TAGATTTTAG
Statistics
Matches: 96, Mismatches: 20, Indels: 11
0.76 0.16 0.09
Matches are distributed among these distances:
46 2 0.02
47 9 0.09
48 31 0.32
49 43 0.45
50 10 0.10
51 1 0.01
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (48 bp):
TTTTAGTATTTTAATATTAAGTTTTAAATTAAATTTTAGATTTTATAT
Found at i:59242301 original size:48 final size:48
Alignment explanation
Indices: 59242221--59242648 Score: 238
Period size: 50 Copynumber: 8.8 Consensus size: 48
59242211 AGGGTTATTC
*
59242221 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGACAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGACAT
* * * ** * * *
59242269 GTGAGCCAATGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGACAT
* * * * * *
59242317 GAGTGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAC-CGATAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAAC-CTCG--ACAT
* * * * *** * *
59242367 GAGAGCCATTATAAGATCATGTCTGGTACATGGCATC-GGTTATGAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCT-CGACAT
* * * * * ** *
59242415 --GTGTCAGTGTAAGACCATCTCTAGGATATGGCATTGGCACAAATGGAC--
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA-T--CA-ACCTCGACAT
* * ** *
59242463 GAGAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGACAT
** * *
59242511 ACGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATACAC
1 --GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCG--ACAT
* * * * * * * * *
59242563 AATAGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTTGATAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGACAT
* *
59242611 GTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
59242649 GCTTTCTACC
Statistics
Matches: 285, Mismatches: 77, Indels: 36
0.72 0.19 0.09
Matches are distributed among these distances:
46 27 0.09
47 2 0.01
48 110 0.39
49 2 0.01
50 141 0.49
51 1 0.00
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGACAT
Found at i:59242424 original size:96 final size:96
Alignment explanation
Indices: 59242225--59242648 Score: 299
Period size: 96 Copynumber: 4.4 Consensus size: 96
59242215 TTATTCGAGA
* * *
59242225 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGACATGTGAGCCAATGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCAACCTCGACATGAGAGCCAATATAAGACCATG
*
59242290 TCTAGGACATGGCATCGGCATTGATATGAGT
66 TCTAGGACATGGCATCGGCATTGAGATGAGT
* * * * *
59242321 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAC-CGATAGATGAGAGCCATTATAAGATC
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCAAC-CTCG--ACATGAGAGCCAATATAAGACC
* *
59242385 ATGTCT-GGTACATGGCATCGG-TTATGAGATGTGT
63 ATGTCTAGG-ACATGGCATCGGCAT-TGAGATGAGT
* * * * * *
59242419 -C-AGTGTAAGACCATCTCTAGGATATGGCATTGGCA-CAA-ATGGAC--GAGAGTCAGTGTAAG
1 GCTAGTGTAAGACCATGTCT-GGA-A---CA-TGGCATCAACCTCGACATGAGAGCCAATATAAG
* * * * * *
59242478 ACCATGTTTGGGACATGGCATCGGCCTCGATATACGAGA
60 ACCATGTCTAGGACATGGCATCGGCATTGAGAT--GAGT
* * * ** * * * *
59242517 GTTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATACACAATAGTCAGTGTAAGACCA
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCAACCTCG--ACATGAGAGCCAATATAAGACCA
* * * * * *
59242582 TGTCTAGGACATGGCATCGACTTTGATACGTGA
64 TGTCTAGGACATGGCATCGGCATTGAGATGAGT
*
59242615 GCTAGTGTAAGACCATGTCTGGGACATGGCATCA
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCA
59242649 GCTTTCTACC
Statistics
Matches: 261, Mismatches: 43, Indels: 46
0.75 0.12 0.13
Matches are distributed among these distances:
94 5 0.02
95 4 0.02
96 87 0.33
97 11 0.04
98 86 0.33
99 2 0.01
100 57 0.22
101 4 0.02
102 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGAACATGGCATCAACCTCGACATGAGAGCCAATATAAGACCATG
TCTAGGACATGGCATCGGCATTGAGATGAGT
Found at i:59246697 original size:130 final size:126
Alignment explanation
Indices: 59246490--59246742 Score: 319
Period size: 130 Copynumber: 2.0 Consensus size: 126
59246480 AATTAACAAA
* * * * *
59246490 ATTATTAATATATACAATTGATGGAGATCATAAATTGTGCTATTAAAATAAAAATGTATAGAACT
1 ATTACTAATATATACAACTGAGGGAGATAATAAATTATGCTATTAAAATAAAAATGTATAGAACT
* * * * *
59246555 TATGAAGATGAAGTTTTGGTTGAGTGGTAAATTTAAGTTTTTACCAATCCAATTGGTGCAC
66 TATGAAAATGAAGCTTTGGTTGACTGGTAAATTTAAGGTTTTACCAATCCAACTGGTGCAC
*
59246616 ATTACTAATATATGCAACTGAGGGAGATAATAAATTATGCATATTAAAATAAAGAAAATGTATA-
1 ATTACTAATATATACAACTGAGGGAGATAATAAATTATGC-TATTAAAAT--A-AAAATGTATAG
* * * *
59246680 AATTATATTAAAATGAAGCTTTGGTTGACTGGTAAATTTAAGGTTTTACTAATTCAACTGGTG
62 AACT-TATGAAAATGAAGCTTTGGTTGACTGGTAAATTTAAGGTTTTACCAATCCAACTGGTG
59246743 TAGGTTTAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
126 34 0.32
127 9 0.08
129 4 0.04
130 60 0.56
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.36
Consensus pattern (126 bp):
ATTACTAATATATACAACTGAGGGAGATAATAAATTATGCTATTAAAATAAAAATGTATAGAACT
TATGAAAATGAAGCTTTGGTTGACTGGTAAATTTAAGGTTTTACCAATCCAACTGGTGCAC
Found at i:59247405 original size:22 final size:21
Alignment explanation
Indices: 59247380--59247427 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
59247370 TTGTTTTATA
*
59247380 CTTTTTAAATTTTTTATATATT
1 CTTTTTAAACTTTTTATA-ATT
**
59247402 CTTTAGAAACTTTTTATAATT
1 CTTTTTAAACTTTTTATAATT
59247423 -TTTTT
1 CTTTTT
59247428 GAGTTATAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 3 0.14
21 3 0.14
22 15 0.71
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (21 bp):
CTTTTTAAACTTTTTATAATT
Found at i:59250926 original size:24 final size:25
Alignment explanation
Indices: 59250894--59250951 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
59250884 TTATCCATTA
*
59250894 TTTTATTTT-ATTTTATTTTTATAT
1 TTTTATTTTAATTTAATTTTTATAT
*
59250918 TTTTGTTTTAATTTAATTTTTATAT
1 TTTTATTTTAATTTAATTTTTATAT
*
59250943 TTTAATTTT
1 TTTTATTTT
59250952 TCTTTTGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (25 bp):
TTTTATTTTAATTTAATTTTTATAT
Found at i:59250948 original size:14 final size:13
Alignment explanation
Indices: 59250902--59250952 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
59250892 TATTTTATTT
59250902 TATTTTATTTTTA
1 TATTTTATTTTTA
59250915 TATTTT-TGTTTTA
1 TATTTTAT-TTTTA
*
59250928 -ATTTAATTTTTA
1 TATTTTATTTTTA
59250940 TATTTTAATTTTT
1 TATTTT-ATTTTT
59250953 CTTTTGTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
12 10 0.31
13 16 0.50
14 6 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (13 bp):
TATTTTATTTTTA
Found at i:59255953 original size:109 final size:109
Alignment explanation
Indices: 59255790--59256215 Score: 782
Period size: 109 Copynumber: 3.9 Consensus size: 109
59255780 TGAGTTTAAA
* * **
59255790 TTCAATAGGATATTT-GACAATTTGGTTAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
1 TTCAAAAGGATATTTAG-CTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
59255854 CCTCGAATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTT
65 CCTCGAATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTT
59255899 TTCAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
1 TTCAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
59255964 CTCGAATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTT
66 CTCGAATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTT
59256008 TTCAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
1 TTCAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
59256073 CTCGAATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTT
66 CTCGAATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTT
59256117 TTCAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
1 TTCAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
* *
59256182 CTCGAATTTCCAAACGCAAAATATTGCCTTATTT
66 CTCGAATTTCCAAACGTAAAACATTGCCTTATTT
59256216 GGAAACATTT
Statistics
Matches: 310, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
109 309 1.00
110 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (109 bp):
TTCAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
CTCGAATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTT
Found at i:59256762 original size:9 final size:10
Alignment explanation
Indices: 59256721--59256767 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
59256711 CTATCATAAA
59256721 ATATAAAAAGT
1 ATATAAAAA-T
*
59256732 ATGTATATAAAT
1 A--TATAAAAAT
59256744 ATATAAAAAT
1 ATATAAAAAT
59256754 ATA-AAAAAT
1 ATATAAAAAT
59256763 ATATA
1 ATATA
59256768 CTCCTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
9 9 0.29
10 12 0.39
11 1 0.03
12 2 0.06
13 7 0.23
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:59257806 original size:20 final size:20
Alignment explanation
Indices: 59257770--59257809 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
59257760 TCCTATTGTT
59257770 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
59257790 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
59257810 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:59259120 original size:33 final size:33
Alignment explanation
Indices: 59259078--59259143 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
59259068 AAATCTATAA
*
59259078 TGAGTTACACGATTAGAAGACGTGGTCGTGTAG
1 TGAGTTACACGATTAGAAGACGTGGGCGTGTAG
59259111 TGAGTTACACGATTAGAAGACGTGGGCGTGTAG
1 TGAGTTACACGATTAGAAGACGTGGGCGTGTAG
59259144 GTTACACGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.12, G:0.35, T:0.26
Consensus pattern (33 bp):
TGAGTTACACGATTAGAAGACGTGGGCGTGTAG
Found at i:59259150 original size:30 final size:32
Alignment explanation
Indices: 59259079--59259151 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 32
59259069 AATCTATAAT
*
59259079 GAGTTACACGATTAGAAGACGTGGTCGTGTAG
1 GAGTTACACGATTAGAAGACGTGGGCGTGTAG
59259111 TGAGTTACACGATTAGAAGACGTGGGCGTGTA-
1 -GAGTTACACGATTAGAAGACGTGGGCGTGTAG
59259143 G-GTTACACG
1 GAGTTACACG
59259152 GCCTGGACAC
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 8 0.21
31 1 0.03
33 30 0.77
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.25
Consensus pattern (32 bp):
GAGTTACACGATTAGAAGACGTGGGCGTGTAG
Found at i:59259957 original size:7 final size:7
Alignment explanation
Indices: 59259932--59259978 Score: 60
Period size: 7 Copynumber: 6.4 Consensus size: 7
59259922 GCCCCTCCCC
59259932 ATTTATT
1 ATTTATT
59259939 ATTTTATTTT
1 A-TTTA--TT
59259949 ATTTATT
1 ATTTATT
59259956 ATTTATT
1 ATTTATT
59259963 ATTTATT
1 ATTTATT
59259970 ATTT-TT
1 ATTTATT
59259976 ATT
1 ATT
59259979 ATACTGTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 5 0.14
7 21 0.57
8 4 0.11
9 4 0.11
10 3 0.08
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
ATTTATT
Found at i:59259989 original size:31 final size:31
Alignment explanation
Indices: 59259932--59260019 Score: 74
Period size: 31 Copynumber: 2.8 Consensus size: 31
59259922 GCCCCTCCCC
* * *
59259932 ATTTATTA-TTTTATTTTATTTATTATTTATT
1 ATTTATTATTTTTATTATATCTATTA-TTACT
*
59259963 ATTTATTATTTTTATTATA-CTGTTATTACT
1 ATTTATTATTTTTATTATATCTATTATTACT
* *
59259993 AGTTTGTTATTATTATTATTAT-TATTA
1 A-TTTATTATTTTTATTA-TATCTATTA
59260020 GGTTTCATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
30 5 0.11
31 26 0.57
32 15 0.33
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.67
Consensus pattern (31 bp):
ATTTATTATTTTTATTATATCTATTATTACT
Found at i:59260036 original size:3 final size:3
Alignment explanation
Indices: 59259934--59260019 Score: 63
Period size: 3 Copynumber: 29.0 Consensus size: 3
59259924 CCCTCCCCAT
*
59259934 TTA TTA TT- TTA TT- TTA TTTA TTA TTTA TTA TTTA TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA -TTA TTA TTA TTA TTA
* * * * *
59259980 -TA CTG TTA TTA CTA GT- TTG TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
59260020 GGTTTCATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
2 7 0.10
3 51 0.76
4 9 0.13
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:59261644 original size:6 final size:6
Alignment explanation
Indices: 59261633--59261693 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
59261623 TTCTTTTCAA
* ** *
59261633 TTTTAT TTTTA- TTTTAT TTTAAT TTTTAT TTTGCT TCTTAGTT GTTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA--T -TTTTAT
59261683 TTTTAT TTTTA
1 TTTTAT TTTTA
59261694 GACTTCTTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
5 5 0.12
6 32 0.74
7 1 0.02
8 1 0.02
9 4 0.09
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:59261648 original size:11 final size:11
Alignment explanation
Indices: 59261621--59261664 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
59261611 TATTTATTTC
*
59261621 TTTTCTTTTCAA
1 TTTTATTTT-AA
*
59261633 TTTTATTTTTA
1 TTTTATTTTAA
59261644 TTTTATTTTAA
1 TTTTATTTTAA
59261655 TTTTTATTTT
1 -TTTTATTTT
59261665 GCTTCTTAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 11 0.39
12 17 0.61
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTATTTTAA
Found at i:59262464 original size:26 final size:26
Alignment explanation
Indices: 59262433--59262488 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
59262423 CCTATTGAAT
59262433 TAACCCTTAGTCAACCTCGTTGAGCC
1 TAACCCTTAGTCAACCTCGTTGAGCC
*
59262459 TAACCCTTAGTTAACCTCGTTGAGCC
1 TAACCCTTAGTCAACCTCGTTGAGCC
59262485 TAAC
1 TAAC
59262489 ACACCCATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (26 bp):
TAACCCTTAGTCAACCTCGTTGAGCC
Found at i:59269083 original size:5 final size:5
Alignment explanation
Indices: 59269073--59269127 Score: 53
Period size: 5 Copynumber: 11.4 Consensus size: 5
59269063 AAACAAAATA
* * *
59269073 ATTAT ATTAT ATTAT ATTAT ATTAT A-AAT TTTA- ATTAAT ATAAT A-TAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATT-AT ATTAT ATTAT
59269121 ATTAT AT
1 ATTAT AT
59269128 AAAGAGTGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
4 7 0.17
5 31 0.77
6 2 0.05
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (5 bp):
ATTAT
Found at i:59269431 original size:16 final size:17
Alignment explanation
Indices: 59269401--59269435 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
59269391 ACAACATCCA
59269401 TTTTTATAATATTCATT
1 TTTTTATAATATTCATT
*
59269418 TTTTTA-AATTTTCATT
1 TTTTTATAATATTCATT
59269434 TT
1 TT
59269436 AAGCTATGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTATAATATTCATT
Found at i:59273783 original size:21 final size:23
Alignment explanation
Indices: 59273754--59273795 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
59273744 TTCTAAATAA
*
59273754 AGACTAATG-AATAAAAAAAATT
1 AGACTAATGAAACAAAAAAAATT
59273776 AGAC-AATGAAACAAAAAAAA
1 AGACTAATGAAACAAAAAAAA
59273796 ACTTTTAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.69, C:0.07, G:0.10, T:0.14
Consensus pattern (23 bp):
AGACTAATGAAACAAAAAAAATT
Found at i:59274477 original size:16 final size:16
Alignment explanation
Indices: 59274452--59274486 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
59274442 TTATAAGAAA
* *
59274452 AAATTTTAAAATAGAC
1 AAATTATAAAATAAAC
59274468 AAATTATAAAATAAAC
1 AAATTATAAAATAAAC
59274484 AAA
1 AAA
59274487 ATTTTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (16 bp):
AAATTATAAAATAAAC
Found at i:59274655 original size:22 final size:23
Alignment explanation
Indices: 59274621--59274672 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
59274611 TAAATTTAAA
59274621 AAATAAAAGAAAAAAATAAATTG
1 AAATAAAAGAAAAAAATAAATTG
* *
59274644 AAATAAAA-AAAAAACTCAATTG
1 AAATAAAAGAAAAAAATAAATTG
59274666 AAATAAA
1 AAATAAA
59274673 GATAAAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.17
Consensus pattern (23 bp):
AAATAAAAGAAAAAAATAAATTG
Found at i:59274679 original size:23 final size:22
Alignment explanation
Indices: 59274621--59274679 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
59274611 TAAATTTAAA
59274621 AAATAAAAGAAAAAAATAAATTG
1 AAAT-AAAGAAAAAAATAAATTG
*
59274644 AAATAAA-AAAAAAACTCAATTG
1 AAATAAAGAAAAAAA-TAAATTG
*
59274666 AAATAAAGATAAAA
1 AAATAAAGAAAAAA
59274680 TCAAAAGGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 7 0.22
22 16 0.50
23 9 0.28
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.17
Consensus pattern (22 bp):
AAATAAAGAAAAAAATAAATTG
Found at i:59277628 original size:14 final size:14
Alignment explanation
Indices: 59277575--59277619 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
59277565 TATGAGTATT
* * *
59277575 TATATCTATATTTC
1 TATATCTGTATCTA
*
59277589 TATATCTGTATCTG
1 TATATCTGTATCTA
59277603 TATATCTGTATCTA
1 TATATCTGTATCTA
59277617 TAT
1 TAT
59277620 TTTTGTATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (14 bp):
TATATCTGTATCTA
Found at i:59278632 original size:24 final size:24
Alignment explanation
Indices: 59278598--59278649 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
59278588 TTTTTATAAG
* *
59278598 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
59278622 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
59278646 ATTT
1 ATTT
59278650 GACCTACGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:59279655 original size:13 final size:13
Alignment explanation
Indices: 59279637--59279661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59279627 AAATTAAGAG
59279637 TTATTTTTTTAAT
1 TTATTTTTTTAAT
59279650 TTATTTTTTTAA
1 TTATTTTTTTAA
59279662 CTTCAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTATTTTTTTAAT
Found at i:59279675 original size:34 final size:33
Alignment explanation
Indices: 59279614--59279694 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 33
59279604 AGATAATTAC
* *
59279614 ATTTATTTTCTTTAAATTAAGAGTTATTTTTTTA
1 ATTTATTTT-TTTAAATTAAGAATTATTTATTTA
* *
59279648 ATTTATTTTTTTAACTTCAATAATTATTTATTTA
1 ATTTATTTTTTTAAATT-AAGAATTATTTATTTA
*
59279682 TTTTATTATTTTT
1 ATTTATT-TTTTT
59279695 CACATGTAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
33 7 0.17
34 28 0.70
35 5 0.12
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (33 bp):
ATTTATTTTTTTAAATTAAGAATTATTTATTTA
Found at i:59281020 original size:40 final size:40
Alignment explanation
Indices: 59280944--59281020 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
59280934 ACACACCATG
* * *
59280944 TGGGGATAGAATCGACCCACCCAAACTTACACACCAAGTA
1 TGGGGATAGAATCAACCCACCCAAACCTACAAACCAAGTA
* * *
59280984 TGGGGATATAATCAACCCATCCAACCCTACAAACCAA
1 TGGGGATAGAATCAACCCACCCAAACCTACAAACCAA
59281021 AAGGTACCGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.39, C:0.31, G:0.14, T:0.16
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCACCCAAACCTACAAACCAAGTA
Found at i:59281389 original size:13 final size:13
Alignment explanation
Indices: 59281371--59281404 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
59281361 AGGCTCACAC
59281371 GCCCGTGTGCCCT
1 GCCCGTGTGCCCT
59281384 GCCCGTGTGCCCT
1 GCCCGTGTGCCCT
*
59281397 ACCCGTGT
1 GCCCGTGT
59281405 AGATCACACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.03, C:0.44, G:0.29, T:0.24
Consensus pattern (13 bp):
GCCCGTGTGCCCT
Found at i:59283233 original size:14 final size:16
Alignment explanation
Indices: 59283214--59283245 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
59283204 CATTGTTTCA
59283214 TTCATTT-T-ATTTTT
1 TTCATTTGTAATTTTT
59283228 TTCATTTGTAATTTTT
1 TTCATTTGTAATTTTT
59283244 TT
1 TT
59283246 TTTACAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 1 0.06
16 8 0.50
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.75
Consensus pattern (16 bp):
TTCATTTGTAATTTTT
Found at i:59286002 original size:19 final size:19
Alignment explanation
Indices: 59285967--59286005 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
59285957 AAATAGTGAG
59285967 AATTTATTTTCTAAGAATA
1 AATTTATTTTCTAAGAATA
*
59285986 AATTCTATTTT-TCAGAATA
1 AATT-TATTTTCTAAGAATA
59286005 A
1 A
59286006 CAATTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:59289260 original size:40 final size:40
Alignment explanation
Indices: 59289201--59289348 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
59289191 GAGCATTGGA
*
59289201 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
59289241 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
59289281 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
59289321 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
59289349 ATGTGTTTGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:59300688 original size:27 final size:26
Alignment explanation
Indices: 59300671--59300740 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
59300661 ATATTAAGTC
59300671 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
59300698 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
59300726 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
59300741 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:59300734 original size:28 final size:28
Alignment explanation
Indices: 59300671--59300768 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
59300661 ATATTAAGTC
*
59300671 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
59300698 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
59300726 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
59300755 CGCACACTTAGTGC
1 CGCACACTTAGTGC
59300769 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:59301234 original size:12 final size:12
Alignment explanation
Indices: 59301217--59301242 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
59301207 TGGGCATACT
59301217 TATGTATATATA
1 TATGTATATATA
59301229 TATGTATATATA
1 TATGTATATATA
59301241 TA
1 TA
59301243 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:59303861 original size:195 final size:195
Alignment explanation
Indices: 59303529--59303917 Score: 699
Period size: 195 Copynumber: 2.0 Consensus size: 195
59303519 TTAAATATAA
59303529 AGTACTACCGAGTATTGGTTTTGGTATTTTACGGAAGATGGCAAGGATATGTGTTCGAGGAAAAT
1 AGTACTACCGAGTATTGGTTTTGGTATTTTACGGAAGATGGCAAGGATATGTGTTCGAGGAAAAT
* *
59303594 CCCGTTTGAACCTTAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGGTTGAGCATCCG
66 CCCGTTTGAACCTTAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGCTAGAGCATCCG
* * *
59303659 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAGTCT
131 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGTCT
59303724 AGTACTACCGAGTATTGGTTTTGGTATTTTACGGAAGATGGCAAGGATATGTGTTCGAGGAAAAT
1 AGTACTACCGAGTATTGGTTTTGGTATTTTACGGAAGATGGCAAGGATATGTGTTCGAGGAAAAT
59303789 CCCGTTTGAACCTTAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGACTAG-GCATCC
66 CCCGTTTGAACCTTAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATG-CTAGAGCATCC
* *
59303853 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGGGTTGAGTC
130 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGTC
59303918 CGAGTTCACT
Statistics
Matches: 186, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
195 184 0.99
196 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (195 bp):
AGTACTACCGAGTATTGGTTTTGGTATTTTACGGAAGATGGCAAGGATATGTGTTCGAGGAAAAT
CCCGTTTGAACCTTAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGCTAGAGCATCCG
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTGAGTCT
Found at i:59307917 original size:19 final size:19
Alignment explanation
Indices: 59307889--59307926 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
59307879 TCCCATTATT
*
59307889 TATTTATTTTTTGTTTTAA
1 TATTTATTTTATGTTTTAA
*
59307908 TATTTTTTTTATGTTTTAA
1 TATTTATTTTATGTTTTAA
59307927 ATGTATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (19 bp):
TATTTATTTTATGTTTTAA
Found at i:59311379 original size:57 final size:55
Alignment explanation
Indices: 59311287--59311402 Score: 205
Period size: 57 Copynumber: 2.1 Consensus size: 55
59311277 TTCCAATCAG
*
59311287 TTTTCTCATTTCCGATTAGACTAATGACATGCTTAGATTATCTACGAATATAAGGT
1 TTTTCTCATTTCCGATTAAACTAATGACATGCTTAGATTATCTACGAATATAA-GT
59311343 TTTTGCTCATTTCCGATTAAACTAATGACATGCTTAGATTATCTACGAATATAAGT
1 TTTT-CTCATTTCCGATTAAACTAATGACATGCTTAGATTATCTACGAATATAAGT
59311399 TTTT
1 TTTT
59311403 ATTCTATATT
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
56 10 0.17
57 48 0.83
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (55 bp):
TTTTCTCATTTCCGATTAAACTAATGACATGCTTAGATTATCTACGAATATAAGT
Found at i:59311960 original size:22 final size:22
Alignment explanation
Indices: 59311935--59311976 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
59311925 CTTGAAAAAA
* *
59311935 TAGTTTAATTGATAAATTAATT
1 TAGTTAAATTAATAAATTAATT
*
59311957 TAGTTAAATTAATTAATTAA
1 TAGTTAAATTAATAAATTAA
59311977 CTAATATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (22 bp):
TAGTTAAATTAATAAATTAATT
Found at i:59326481 original size:46 final size:46
Alignment explanation
Indices: 59326420--59326510 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
59326410 GCAACAAAAA
* *
59326420 AAAAACAACATTCTAGAGAAGTATATATACTACACTCTTAAACAAG
1 AAAAACAACATTCTAGAGAAGTATATAAAATACACTCTTAAACAAG
*
59326466 AAAATCAACATTCTAGAGAAGTATATAAAATACACTCTTAAACAA
1 AAAAACAACATTCTAGAGAAGTATATAAAATACACTCTTAAACAA
59326511 CAGTAACCAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (46 bp):
AAAAACAACATTCTAGAGAAGTATATAAAATACACTCTTAAACAAG
Found at i:59326854 original size:3 final size:3
Alignment explanation
Indices: 59326820--59326869 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
59326810 TTCAAATTCC
* * * * *
59326820 TCT TCT TGT TCT TGT TCT TCA TCA TCT CCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
59326868 TC
1 TC
59326870 GACTATTAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.04, C:0.32, G:0.04, T:0.60
Consensus pattern (3 bp):
TCT
Found at i:59327152 original size:15 final size:14
Alignment explanation
Indices: 59327134--59327163 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
59327124 TTTTCTCTTC
59327134 TTTTTTTATTTTTTG
1 TTTTTTT-TTTTTTG
59327149 TTTTTTTTTTTTTG
1 TTTTTTTTTTTTTG
59327163 T
1 T
59327164 AATAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.03, C:0.00, G:0.07, T:0.90
Consensus pattern (14 bp):
TTTTTTTTTTTTTG
Found at i:59327557 original size:22 final size:23
Alignment explanation
Indices: 59327532--59327578 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
59327522 AGATTCATTT
*
59327532 ATATATTTATAAA-ATAAATTAA
1 ATATATTTATAAATATAAAGTAA
* *
59327554 ATATTTTTTTAAATATAAAGTAA
1 ATATATTTATAAATATAAAGTAA
59327577 AT
1 AT
59327579 TAAATACTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
ATATATTTATAAATATAAAGTAA
Found at i:59338694 original size:13 final size:12
Alignment explanation
Indices: 59338671--59338696 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
59338661 GATTGTGATT
59338671 TTGTCAAAAAAA
1 TTGTCAAAAAAA
59338683 TTGTCAAAAAAA
1 TTGTCAAAAAAA
59338695 TT
1 TT
59338697 CATCATCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (12 bp):
TTGTCAAAAAAA
Found at i:59339634 original size:18 final size:19
Alignment explanation
Indices: 59339598--59339643 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
59339588 GAGATACGAG
59339598 AGAAAAAGAAATCAAAAAA
1 AGAAAAAGAAATCAAAAAA
**
59339617 AGAAAAAGAAAT-TGAAAA
1 AGAAAAAGAAATCAAAAAA
59339635 AGAAAAAGA
1 AGAAAAAGA
59339644 GAGTGAGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.07
Consensus pattern (19 bp):
AGAAAAAGAAATCAAAAAA
Found at i:59342838 original size:33 final size:33
Alignment explanation
Indices: 59342782--59342848 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
59342772 TCAACCGAGT
* * *
59342782 TTGTATCAGAAGTCATGTAGAGATGTTGTGTAC
1 TTGTATCAAAAGACATGTAGAGATGTTGTATAC
59342815 TTGTATCAAAAGACATGCT-GAGATGTTGTATAC
1 TTGTATCAAAAGACATG-TAGAGATGTTGTATAC
59342848 T
1 T
59342849 CTAGTTTGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.36
Consensus pattern (33 bp):
TTGTATCAAAAGACATGTAGAGATGTTGTATAC
Found at i:59349451 original size:30 final size:30
Alignment explanation
Indices: 59349415--59349529 Score: 167
Period size: 30 Copynumber: 3.8 Consensus size: 30
59349405 ATCCATATTT
* *
59349415 ATGGAAAATTAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
59349445 ATGGAAAGTCAAAGATATGAGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
* *
59349475 TTGGAAAGTCAAATATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
* *
59349505 TTAGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
59349530 GAGATATTGG
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.27
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:59349486 original size:15 final size:15
Alignment explanation
Indices: 59349438--59349517 Score: 58
Period size: 15 Copynumber: 5.3 Consensus size: 15
59349428 GATATGGGTA
*
59349438 TCAAATAATGGAAAG
1 TCAAATATTGGAAAG
* *
59349453 TCAAAGATAT-GAGTA-
1 TCAAATAT-TGGA-AAG
59349468 TCAAATATTGGAAAG
1 TCAAATATTGGAAAG
**
59349483 TCAAATATATGGGTA-
1 TCAAATAT-TGGAAAG
*
59349498 TCAAATATTAGAAAG
1 TCAAATATTGGAAAG
59349513 TCAAA
1 TCAAA
59349518 GATATGGGTA
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
14 5 0.10
15 38 0.78
16 6 0.12
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.26
Consensus pattern (15 bp):
TCAAATATTGGAAAG
Found at i:59354136 original size:15 final size:15
Alignment explanation
Indices: 59354116--59354223 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
59354106 TTTATGGAAA
*
59354116 ATCAAAGATATGGGT
1 ATCAAATATATGGGT
**
59354131 ATCAAATA-ATGGAA
1 ATCAAATATATGGGT
*
59354145 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
**
59354161 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
59354175 AGTCAAATATATGGGT
1 A-TCAAATATATGGGT
**
59354191 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
*
59354205 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
59354221 ATC
1 ATC
59354224 GAGATATTGG
Statistics
Matches: 71, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
14 13 0.18
15 45 0.63
16 13 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (15 bp):
ATCAAATATATGGGT
Found at i:59354145 original size:30 final size:30
Alignment explanation
Indices: 59354109--59354223 Score: 194
Period size: 30 Copynumber: 3.8 Consensus size: 30
59354099 ATCCATATTT
*
59354109 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
59354139 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
* *
59354169 TTGGAAAGTCAAATATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
59354199 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
59354224 GAGATATTGG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:59356211 original size:94 final size:94
Alignment explanation
Indices: 59356031--59356203 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
59356021 AATGAGACAT
* * *
59356031 ATCACAAATCTCACAAAGCCCATGCTCTCAAGGAGCACGCAGAGTGAGGCTCACGAAAGCTCATG
1 ATCACAAAACTCAAAAAGCCCATGCTCTCAAGGAGCACGCAGAGTGAGGCTCACAAAAGCTCATG
* * * *
59356096 TTTTTAAAGGAGCATACAGAGTAAGACTC
66 ATCTCAAAGGAACATACAGAGTAAGACTC
* *
59356125 ATCACAAAACTCATAAAAG-CCATGCTCTCGAGGAGCACGCAGATTGAGGCTCACAAAAGCTCAT
1 ATCACAAAACTCA-AAAAGCCCATGCTCTCAAGGAGCACGCAGAGTGAGGCTCACAAAAGCTCAT
59356189 GATCTCAAAGGAACA
65 GATCTCAAAGGAACA
59356204 CTTAGAGTGA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
94 65 0.94
95 4 0.06
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (94 bp):
ATCACAAAACTCAAAAAGCCCATGCTCTCAAGGAGCACGCAGAGTGAGGCTCACAAAAGCTCATG
ATCTCAAAGGAACATACAGAGTAAGACTC
Found at i:59356217 original size:94 final size:93
Alignment explanation
Indices: 59356018--59356217 Score: 242
Period size: 94 Copynumber: 2.1 Consensus size: 93
59356008 AAGAAGCACG
* * *
59356018 TAGAATGAGACATATCACAAATCTCACAAAGCCCATGCTCTCAAGGAGCACGCAGAGTGAGGCTC
1 TAGAGTGAGAC-TATCACAAAACTCAAAAAGCCCATGCTCTCAAGGAGCACGCAGAGTGAGGCTC
* * * * *
59356083 ACGAAAGCTCATGTTTTTAAAGGAGCATA
65 ACAAAAGCTCATGATCTCAAAGGAACATA
* * * *
59356112 CAGAGTAAGACTCATCACAAAACTCATAAAAG-CCATGCTCTCGAGGAGCACGCAGATTGAGGCT
1 TAGAGTGAGACT-ATCACAAAACTCA-AAAAGCCCATGCTCTCAAGGAGCACGCAGAGTGAGGCT
59356176 CACAAAAGCTCATGATCTCAAAGGAACACT-
64 CACAAAAGCTCATGATCTCAAAGGAACA-TA
59356206 TAGAGTGAGACT
1 TAGAGTGAGACT
59356218 TAACATGGAT
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
93 1 0.01
94 83 0.93
95 5 0.06
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (93 bp):
TAGAGTGAGACTATCACAAAACTCAAAAAGCCCATGCTCTCAAGGAGCACGCAGAGTGAGGCTCA
CAAAAGCTCATGATCTCAAAGGAACATA
Found at i:59371382 original size:27 final size:28
Alignment explanation
Indices: 59371337--59371395 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 28
59371327 TTATATAAAT
* *
59371337 AATTTATATATTTTATAAAGTCATACAAA
1 AATTTATATATATTATAAAGTC-TAAAAA
*
59371366 AATTTATAT-TATT-TAAATTCTAAAAA
1 AATTTATATATATTATAAAGTCTAAAAA
59371392 AATT
1 AATT
59371396 CTAAATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.33
27 6 0.22
28 3 0.11
29 9 0.33
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (28 bp):
AATTTATATATATTATAAAGTCTAAAAA
Found at i:59376937 original size:6 final size:6
Alignment explanation
Indices: 59376926--59376967 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
59376916 CTTAATTATA
* *
59376926 AATATT AATATT AATATT AATATT AATATG AAAATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT
59376968 CTTTTACTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (6 bp):
AATATT
Found at i:59378910 original size:12 final size:13
Alignment explanation
Indices: 59378893--59378923 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
59378883 AAGTCATATA
59378893 AAATAACTAA-AT
1 AAATAACTAAGAT
59378905 AAATAACTAAGAT
1 AAATAACTAAGAT
59378918 AAATAA
1 AAATAA
59378924 AATAGAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (13 bp):
AAATAACTAAGAT
Found at i:59379215 original size:27 final size:27
Alignment explanation
Indices: 59379143--59379217 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 27
59379133 AACTCTTCTA
59379143 AAAG-AAAACTCAAA-AGAAATTTTTG
1 AAAGAAAAACTCAAAGAGAAATTTTTG
*
59379168 GAAGAAAAACTC---GAGAAATTTTTG
1 AAAGAAAAACTCAAAGAGAAATTTTTG
*
59379192 AAAGAAAAAATCAAAGAGAAATTTTT
1 AAAGAAAAACTCAAAGAGAAATTTTT
59379218 AACTCAAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
24 21 0.50
25 3 0.07
26 7 0.17
27 11 0.26
ACGTcount: A:0.55, C:0.07, G:0.15, T:0.24
Consensus pattern (27 bp):
AAAGAAAAACTCAAAGAGAAATTTTTG
Found at i:59386949 original size:27 final size:27
Alignment explanation
Indices: 59386912--59387056 Score: 186
Period size: 27 Copynumber: 5.4 Consensus size: 27
59386902 AGCATGGCTG
* *
59386912 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
59386938 CCAGATACAGATA-ATCATGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
59386966 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
59386993 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
59387020 CCAGAACAGATATATGTAGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
59387047 CCAGATCAGA
1 CCAGAACAGA
59387057 AAATTATGGC
Statistics
Matches: 104, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
26 5 0.05
27 83 0.80
28 16 0.15
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:59386976 original size:54 final size:54
Alignment explanation
Indices: 59386912--59387077 Score: 237
Period size: 54 Copynumber: 3.1 Consensus size: 54
59386902 AGCATGGCTG
* * *
59386912 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTATGGCATAGCCA
* * *
59386966 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTATGGCATAGCCA
*
59387020 CCAGAACAGATATATGT-AGCAGAGCCACCAGATCAGAAAATTATGGCATAGCCA
1 CCAGAACAGATATATGTGA-CAGAGCCACCAGATCAGATAATTATGGCATAGCCA
59387074 CCAG
1 CCAG
59387078 GACGCTTCCT
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
54 82 0.82
55 18 0.18
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTATGGCATAGCCA
Found at i:59387072 original size:27 final size:27
Alignment explanation
Indices: 59386930--59387077 Score: 122
Period size: 27 Copynumber: 5.4 Consensus size: 27
59386920 GATAATGTGA
* * *
59386930 CAGAGTCACCAGATACAGATAATCATGG
1 CAGAGCCACCAGAT-CAGAAAATTATGG
* * *
59386958 CAGAGCCACCAGAACAG-ATATATGTGG
1 CAGAGCCACCAGATCAGAAAAT-TATGG
* * *
59386985 CAGAGCCACCAGATCAGATATTTGTGG
1 CAGAGCCACCAGATCAGAAAATTATGG
* * *
59387012 CATAGCCACCAGAACAG-ATA-TATGTAG
1 CAGAGCCACCAGATCAGAAAATTATG--G
59387039 CAGAGCCACCAGATCAGAAAATTATGG
1 CAGAGCCACCAGATCAGAAAATTATGG
*
59387066 CATAGCCACCAG
1 CAGAGCCACCAG
59387078 GACGCTTCCT
Statistics
Matches: 94, Mismatches: 20, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
25 3 0.03
26 2 0.02
27 70 0.74
28 15 0.16
29 4 0.04
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (27 bp):
CAGAGCCACCAGATCAGAAAATTATGG
Found at i:59388731 original size:26 final size:26
Alignment explanation
Indices: 59388700--59388807 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
59388690 TGAAATTCCC
*
59388700 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
59388726 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
59388752 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
59388778 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
59388804 ATCA
1 ATCA
59388808 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:59392807 original size:27 final size:27
Alignment explanation
Indices: 59392770--59392935 Score: 203
Period size: 27 Copynumber: 6.1 Consensus size: 27
59392760 AGCATGGCTG
* *
59392770 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
59392796 CCAGATACAGATA-ATCATGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
59392824 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
59392851 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
59392878 CCAGAACAGATATATGTAGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
59392905 CCAGATCAGATA-ATTGTGGCATAGCCA
1 CCAGAACAGATATA-TGTGGCAGAGCCA
59392932 CCAG
1 CCAG
59392936 GACGCTTCCT
Statistics
Matches: 122, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.05
27 100 0.82
28 16 0.13
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:59392834 original size:54 final size:54
Alignment explanation
Indices: 59392770--59392935 Score: 246
Period size: 54 Copynumber: 3.1 Consensus size: 54
59392760 AGCATGGCTG
* ** *
59392770 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
* *
59392824 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
59392878 CCAGAACAGATATATGT-AGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGA-CAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
59392932 CCAG
1 CCAG
59392936 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
54 84 0.82
55 18 0.18
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
Found at i:59395331 original size:26 final size:26
Alignment explanation
Indices: 59395300--59395355 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
59395290 TGAAATGCCC
59395300 ATCATGGAACATTTACCTAAACC-ATT
1 ATCATGGAACATTTACCT-AACCTATT
59395326 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCTATT
59395352 ATCA
1 ATCA
59395356 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCTATT
Found at i:59397942 original size:20 final size:20
Alignment explanation
Indices: 59397917--59397962 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
59397907 ATTGGGCCTT
59397917 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
59397937 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
59397956 GCCCATA
1 GCCCATA
59397963 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:59397971 original size:19 final size:20
Alignment explanation
Indices: 59397929--59397972 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
59397919 CCATATTAAC
** *
59397929 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
59397949 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
59397968 ACAGT
1 ACAGT
59397973 CTCATATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:59412935 original size:39 final size:39
Alignment explanation
Indices: 59412892--59412993 Score: 150
Period size: 39 Copynumber: 2.6 Consensus size: 39
59412882 AACATGTTTT
* * *
59412892 TGAGTTTTGTGATAGATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
59412931 TGAGTATTGTGATATATGCTTAAATGTTATGTGGTTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
59412970 TGTGTAATGTGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
59412994 CCCTTGTAGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.28, C:0.03, G:0.24, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:59420929 original size:17 final size:17
Alignment explanation
Indices: 59420907--59420941 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
59420897 AATATAGAAA
*
59420907 GTAATCTTAGAAGATTT
1 GTAATCTGAGAAGATTT
*
59420924 GTAATCTGATAAGATTT
1 GTAATCTGAGAAGATTT
59420941 G
1 G
59420942 ATTTTGTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (17 bp):
GTAATCTGAGAAGATTT
Found at i:59421957 original size:18 final size:18
Alignment explanation
Indices: 59421934--59421968 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
59421924 GAGTTAATCG
*
59421934 AATCGAGTTATTTGAGTT
1 AATCGAGTTATTCGAGTT
59421952 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
59421969 CAACTCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:59427336 original size:525 final size:523
Alignment explanation
Indices: 59424295--59432263 Score: 13524
Period size: 523 Copynumber: 15.2 Consensus size: 523
59424285 NNNNNNNNNN
*
59424295 TTCATAATCTCAATTTACCTAATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
*
59424360 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACCTACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
* *
59424425 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCAAAAATAGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * *
59424490 TTGGCCACACAACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCTAGGCTCATTTTGAA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
* * * *
59424555 ATGGCCTTCGAGCAACAATGCTAAGACACACGCACGTGTCCCTGCCCGTATGGTCAAAAATAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
* *
59424620 CATCTAGAAGGCCATAATGCCACCCTATAAGGGTCTTCCCTACAAGCATCAAAACGAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
* * * *
59424685 TGTACCAAATTTTGAACCAATTCAGAACCAAAACTTACAACATTCATGACCTATCGTTATCATCA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
59424750 ATTTCATGCCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATAC
456 ATTTCATG-CTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATAC
59424815 ATGA
520 ATGA
*
59424819 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTTACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
*
59424884 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACCTACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
*
59424949 TTTTTAACACAAAACATATACCAAAATTCATTCATGGTCACATCCATAACCAAGCCAAAATTGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * *
59425014 TTGGCCACACGACCTGGCACACGCCCATATGTGCGACTATGTGATCTGACCAGGCTCATTTCGAA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
* *
59425079 ATGGCTTTCGAGCAACAA-GCTGAGATACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
* *
59425143 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCTTCCCTACAAGCGTCAAAACGAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
*
59425208 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGAAATATCATTATCATCA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
59425273 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
456 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
*
59425338 GGA
521 TGA
59425341 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
59425406 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
59425471 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
59425536 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
59425601 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
59425666 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
*
59425731 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGAAATATCATTATCATCA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
*
59425796 ATTTCATGCTTATAGTCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
456 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
59425861 TGA
521 TGA
59425864 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
59425929 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-T
* ** *
59425994 TTTTTTGACATTAAACATATACCAAAATTCATTCATGATCACATCCATGACCAAGCCAAAATTGA
130 TTTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGA
*
59426059 CTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGA
195 CTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGA
** * * *
59426124 AATGGATTTCGAGCAACAAGGCTGAGACACAGGCCCGTGTCCCTGCCCATATGGGCAAAAGTAGG
260 AATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGG
* * *
59426189 CTATTTAGAAGGACATAATGCCACCCTATAAGGG-CCTGCCTACAAGCATCAAAACGAATTCATT
325 CCATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATT
*
59426253 TTGTACCAAATTTTCAACCAATTCACAACCAAAACTTAGAACATTCATGACATATCATTATCATC
390 TTGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATC
* *
59426318 AATTTCATGCTTATAATCCATAGCAAATCATGACGTATCCTAAGCCAAAAATCATACCAAAATAT
455 AATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATAC
59426383 ATGA
520 ATGA
* * * *
59426387 TTCATAATCTCAATTTACGTAATTCACTCTTATGCTAAGATATTACCAAATTCCAAAATTGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
*
59426452 ATACCAAAACTTACCAAATTGACTAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
* * *
59426517 TTTTTAACACAAAATATATACCGAAATTAATTCATGATCACATCCATAACCAAGCCAAAATTGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* *
59426582 TTGGCCAAACAACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
* * *
59426647 ATGGCCTTCGAGCAACAAAGCTGAGACACATGCCCGTGTCCCTGCCCATATGGGCAAAAATAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
59426712 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
* *
59426777 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACCACATTCATGAAATATCATTATCATCA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
* * *
59426842 ATTTCATGCTTTTAATCCATAGCAAATCATGACATATCGTAAGCAAAAAATCATACCAAAATACA
456 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
59426907 TGA
521 TGA
* *
59426910 TTCATAATCTCAATTTACCTCATTCACTCTTATTCTAACATATTACCAAATCCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
* * * *
59426975 ATACCAAAACTTACTAAATTGTCCAATTCACTTGGCCATTCAAAAGTGCATCAAAAGA-ACCCGT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATA-CC-A
* *
59427039 TTTTTTTGGACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAACT
129 TTTTTTT-AACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATT
* * * *
59427104 GACTTGGCCACACGACCTGGCACACGCCTGTGTGTACGACTATGTGATCTGCCCAGGCACATTCC
193 GACTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTC
*
59427169 GAAATGGCCTTCGAGCAACAAGGCTGAGACACATGCCCGTGTCCCTGCCCGTATGGGCAAAAATA
258 GAAATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATA
*
59427234 GGCCATTTAGAAGGCCACAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCA
323 GGCCATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCA
* * * * * *
59427299 TTTTGTACCAAAGTTCCAACAAATTAACAACCAAAACTTACGACATTCATGAAATATCATTATCA
388 TTTTGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCA
59427364 TCAATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAAT
453 TCAATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAAT
*
59427429 AAATGA
518 ACATGA
59427435 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
*
59427500 ATACAAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
59427565 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* *
59427630 TTGGCCACACGACCTGGCACACGCTCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
*
59427695 ATGGCTTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
*
59427760 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCATACAAGCATCAAAACGAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
* * * *
59427825 TGTACCAAATTTTCAACAAATTTACAACCAAAACTTACAACAGTCATGACCTATCATTATCATCA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
* * *
59427890 ATTTCATGATTATAATCCATAGCAAAACATGACATATCCTAACCCAAAAATCATACCAAAATACA
456 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
59427955 TGA
521 TGA
*
59427958 TTGATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
*
59428023 ATACAAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
59428088 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * * *
59428153 TTGGCCACACCACCTGGCACACGCTCGTGTGTGCGACTATGTGATTTGACCAGGCTCATTTCGAA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
*
59428218 ATGGCTTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
*
59428283 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCATACAAGCATCAAAACGAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
* *
59428348 TGTACCAAATTTTCAACCAATTCACAACTAAAACTTACAACATTCATGAAATATCATTATCATCA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
* *
59428413 ATTTCATGCTTATAGTCCATAGCAAATCATGACATATCCTATGCCAAAAATCATACCAAAATACA
456 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCC--T-------A--A-GCC-AAA-A-A
59428478 TCATACCAAAATACATGA
506 TCATACCAAAATACATGA
* **
59428496 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTATCAAATTCTGAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
59428561 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-T
* ** *
59428626 TTTTTTTACATTAAACATATACCAAAATTCATTCATGATCACATCCATGACCAAGCCAAAATTGA
130 TTTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGA
* * * * *
59428691 CTTGGCCACACTACCTGGCACACGCCCGTGTGTGCGACTACGTGATCTGACCAAGCTCATTTCAA
195 CTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGA
* * * * *
59428756 AATGGCTTTCGAGCAACAAGGCTGAGACACAGGCCCATGTCCCTGCCCATATGGGCAAAAGTAGG
260 AATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGG
* *
59428821 CTATTTAGAAGGCCATAATGCCACCCTATAAGGG-CCTCCCTACAAGTATCAAAACGAATTCATT
325 CCATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATT
* *
59428885 TTGTACCAAATTTTCAACCAATTCACAACCAAAACATAAAACATTCATGACATATCATTATCATC
390 TTGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATC
*
59428950 AATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATAT
455 AATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATAC
59429015 ATGA
520 ATGA
* * * *
59429019 TTCATAATCTCAATTTACGTAATTCACTCCTATGCTAACATATTACCAAATTCCAAAATTGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
*
59429084 ATACCAAAACTTACCAAATTGACTAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-T
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
* *
59429148 TTTTTAACACAAAATATATACCAAAATTCATTCATGATCACATCCACAACCAAGCCAAAATTGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* *
59429213 TTGGCCACACAACCTGGCCCACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
* * **
59429278 ATGGCCTTCGAGCAACAAAGCTGAGACACATGCCCCAGTCCCTGCCCGTATGGGCAAAAATAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
*
59429343 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACAAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
* * *
59429408 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGAAATATCAATATCATGA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
*
59429473 ATTTCATTCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
456 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
59429538 TGA
521 TGA
* *
59429541 TTCATAATCTCAATTTACCTCATTCGCTCTTATGCTAACATATTACCAAATCCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
* * *
59429606 ATACCAAAACTTACGAAATTGTCCAATTCACTTGGCCATTCAAAAGTGCATCAAAAGATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-T
** * *
59429671 TTTTTTGGGCACAAAACATATACCAAAATTCATTCATGATCACATCCATAACAAAGCCAAAACTG
130 TTTTTT-AACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTG
* * * * *
59429736 AATTGGCCACACGACCTGGCACACGCCTGTGTGTACGACTATGTGATCTGCCCAGGCACATTCCG
194 ACTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCG
* * *
59429801 AAAAGGCCTTCGAGCAACACGGCTGAGACACATGCCCGTGTCCCTGCCCGTATGGGCAAAAATAG
259 AAATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAG
59429866 GCCATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCAT
324 GCCATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCAT
* *
59429931 TTTGTACCAAAGTTTCAACAAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCAT
389 TTTGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCAT
59429996 CAATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATA
454 CAATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATA
59430061 CATGA
519 CATGA
59430066 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
* *
59430131 ATACCAAAAGTTACTAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
59430196 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * * * * * * *
59430261 TTAGCCACACGACCTGGCACATGCCCGTGTGTGTGACTATGTGATCTGACGAGCCTTATTTTGAA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
* * * *
59430326 ATGGCTTTCAAGTAACAAGGCTGAGACACACACCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
59430391 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
59430456 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
59430521 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
456 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
59430586 TGA
521 TGA
* * *
59430589 TTCACAATCTCAATTTACCTTATTCACTTTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
* *
59430654 ACACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACCTACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
* *
59430719 TTTTTAACACAAAACTTATACCAAAATTCATTCATGGTCACATCCATAACCAAGCCAAAATTGAC
131 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * * * * *
59430784 ATGGCCACAAGACCTGGCACACGCCCGTGTGTGTGACTATGTGATCTGACCAGGCTTATTTCGTA
196 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
* * * *
59430849 ATGGCTTTCAAGCAATAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAAGAGGC
261 ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
*
59430914 CATTTAGAAGGCCATAATGCAACCCTATAAGGGTCCTCCCTACAAGCATC-AAACGAATTCATTT
326 CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
59430978 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
391 TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
* * *
59431043 ATTTCATGCTTATAATCCATAGCAAATCATGAGATATCCGAAGCCAAAGATCATACCAAAATACA
456 ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
59431108 TGA
521 TGA
*
59431111 TTCACAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
* *
59431176 ATACCAAAACTTGCCAAATTGACCAATTCACTTCGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-T
* *
59431241 TTTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATTACCAATCCAAAATTGA
130 TTTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGA
* * *
59431306 CTTGGCCACACAACCTAGCACACGCCCGTGTGTGCGACTATGTGATCTGCCTAGGCTCATTTCGA
195 CTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGA
* * * *
59431371 AATGGCCTTCGAGTAACAAAGCTGAGACACATGCCCGTGTTCCTGCCCGTATGGGCAAAAATAGG
260 AATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGG
*
59431436 CCATTTAGAAGGCCATAATGCCACCCTATAAGGGTCTTCCCTACAAGCATCAAAACGAATTCATT
325 CCATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATT
* *
59431501 TTGTCCCATATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATC
390 TTGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATC
* *
59431566 AATTTCATGC-TGTAATCCATAGCAAATCATGACATATCCTAAGCCGAAAATCATACCAAAATAC
455 AATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATAC
59431630 ATGA
520 ATGA
59431634 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
59431699 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-T
*
59431764 TTTTTTAACACAAAACATAAACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGA
130 TTTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGA
*
59431829 CTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATATGATCTGCCCAGGCTCATTTCGA
195 CTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGA
* *
59431894 AATGGCCTTCGAGCAACAAGGCTGAGACATACGCCCGTGCCCCTGCCCGTATGGGCAAAAATAGG
260 AATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGG
* * *
59431959 CCATTTAGAAGGCCTTAATGACA-CCTACAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATT
325 CCATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATT
* * *
59432023 TTGTACCAAATTTTCAACCAATTTACAACCAAAACTTACAACACTCATGACATATCATTCTCATC
390 TTGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATC
* * * *
59432088 AATTTCAAGCTTATAATCCATAGCAAATCATGACATATCCTATGCCAAAAATCATAACAAATTAC
455 AATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATAC
*
59432153 AAGA
520 ATGA
*
59432157 TTCATAATCTCAATTTACCTCATTCAATCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
1 TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
59432222 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCA
66 ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCA
59432264 GCTAACATAT
Statistics
Matches: 7026, Mismatches: 389, Indels: 61
0.94 0.05 0.01
Matches are distributed among these distances:
521 209 0.03
522 1191 0.17
523 3556 0.51
524 598 0.09
525 973 0.14
526 3 0.00
527 1 0.00
529 1 0.00
532 1 0.00
534 1 0.00
535 2 0.00
536 4 0.00
537 1 0.00
538 270 0.04
539 215 0.03
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (523 bp):
TTCATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCAC
ATACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATT
TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAA
ATGGCCTTCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGC
CATTTAGAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTT
TGTACCAAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCA
ATTTCATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACA
TGA
Found at i:59428482 original size:15 final size:15
Alignment explanation
Indices: 59428462--59428493 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
59428452 TATGCCAAAA
59428462 ATCATACCAAAATAC
1 ATCATACCAAAATAC
59428477 ATCATACCAAAATAC
1 ATCATACCAAAATAC
59428492 AT
1 AT
59428494 GATTCATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (15 bp):
ATCATACCAAAATAC
Found at i:59432241 original size:33 final size:33
Alignment explanation
Indices: 59432199--59432315 Score: 103
Period size: 33 Copynumber: 3.3 Consensus size: 33
59432189 TGCTAACATA
59432199 TTACCAAATTCCAAAATAGGCACATACCAAAAC
1 TTACCAAATTCCAAAATAGGCACATACCAAAAC
* * *
59432232 TTACCAAATTGACCAATTCACTTGGC-CATTCAGCTAACATA-
1 TTACCAAATT--CCAA---AATAGGCACA-T-A-CCAA-A-AC
59432273 TTACCAAATTCCAAAATAGGCACATACCAAAAC
1 TTACCAAATTCCAAAATAGGCACATACCAAAAC
59432306 TTACCAAATT
1 TTACCAAATT
59432316 GACAAATTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 24
0.69 0.06 0.25
Matches are distributed among these distances:
32 1 0.02
33 21 0.32
34 3 0.05
35 5 0.08
36 6 0.09
37 4 0.06
38 6 0.09
39 5 0.08
40 3 0.05
41 11 0.17
42 1 0.02
ACGTcount: A:0.43, C:0.26, G:0.07, T:0.24
Consensus pattern (33 bp):
TTACCAAATTCCAAAATAGGCACATACCAAAAC
Found at i:59432268 original size:74 final size:74
Alignment explanation
Indices: 59432190--59432337 Score: 287
Period size: 74 Copynumber: 2.0 Consensus size: 74
59432180 TCAATCTTAT
*
59432190 GCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATTGACCAATTCACTT
1 GCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATTGACAAATTCACTT
59432255 GGCCATTCA
66 GGCCATTCA
59432264 GCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATTGACAAATTCACTT
1 GCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATTGACAAATTCACTT
59432329 GGCCATTCA
66 GGCCATTCA
59432338 AAAGTGCATC
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.41, C:0.26, G:0.08, T:0.24
Consensus pattern (74 bp):
GCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATTGACAAATTCACTT
GGCCATTCA
Found at i:59433543 original size:42 final size:42
Alignment explanation
Indices: 59433443--59433604 Score: 125
Period size: 43 Copynumber: 3.8 Consensus size: 42
59433433 AGCTCGTACA
* * * *
59433443 ATGCCAATGTCCCAGAC-GTGGCCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCCAGACAG-GGTCTTACACGAAATCAAACATCG
* *
59433486 ATGCCACTTTCCCAGACAGGGTCTGACACGAAATCAAACA-CG
1 ATGCCA-TGTCCCAGACAGGGTCTTACACGAAATCAAACATCG
* *
59433528 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCC-ATGTCCCAGACAGGGTCTTACACG-AAATCA-AACATCG
** *
59433572 ATGCCAACATCCCAGA-TGTGGTCTTACACGAAA
1 ATGCC-ATGTCCCAGACAG-GGTCTTACACGAAA
59433605 ACACATATCG
Statistics
Matches: 97, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.29
43 40 0.41
44 29 0.30
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (42 bp):
ATGCCATGTCCCAGACAGGGTCTTACACGAAATCAAACATCG
Found at i:59433585 original size:86 final size:85
Alignment explanation
Indices: 59433443--59433604 Score: 195
Period size: 86 Copynumber: 1.9 Consensus size: 85
59433433 AGCTCGTACA
* * *
59433443 ATGCCAATGTCCCAGACGTGGCCTTACATGTAATCAAATATCGATGCCACTTTCCCAGACAG-GG
1 ATGCCAATGTCCCAGACATGGCCTTACACGTAATCAAATATCGATGCCACTATCCCAGA-AGTGG
59433507 TCTGACACGAAATCAAACACG
65 TCTGACACGAAATCAAACACG
* * * *
59433528 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-ATCCCAGATGT
1 ATGCCAATGTCCCAGACATGGCCTTACACGT-AATCA-AATATCGATGCC-ACTATCCCAGAAGT
*
59433591 GGTCTTACACGAAA
63 GGTCTGACACGAAA
59433605 ACACATATCG
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
85 28 0.43
86 33 0.51
87 4 0.06
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGCCTTACACGTAATCAAATATCGATGCCACTATCCCAGAAGTGGT
CTGACACGAAATCAAACACG
Found at i:59449668 original size:50 final size:49
Alignment explanation
Indices: 59449547--59449728 Score: 153
Period size: 49 Copynumber: 3.7 Consensus size: 49
59449537 ATAGGGTGTA
*
59449547 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCGAAATCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCG
* * * *
59449596 AGGCCGACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTC-ACATATTTG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCGA-A-A-TCG
* * * *
59449647 -TGCCGATGCCACGTCCCAGACATGGTTTTATC-CTGAC-ACTTCTATA-CG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTA-CACTGACTA--TCGAAATCG
* *
59449695 -TGCCAATGCCATGTGCCAGACATGGTCTTACACT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACT
59449729 AACACATCTC
Statistics
Matches: 107, Mismatches: 16, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
47 1 0.01
48 31 0.29
49 37 0.35
50 31 0.29
51 6 0.06
52 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCG
Found at i:59456133 original size:29 final size:29
Alignment explanation
Indices: 59456070--59456137 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
59456060 TAATCAACCG
59456070 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
59456099 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
59456128 CGCACACTTA
1 CGCACACTTA
59456138 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:59456249 original size:174 final size:174
Alignment explanation
Indices: 59455959--59456286 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
59455949 AACTCAAGGT
*
59455959 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
59456024 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
59456089 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
59456133 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
59456198 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
59456263 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
59456287 TGTACAATTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:59456278 original size:29 final size:30
Alignment explanation
Indices: 59456239--59456317 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
59456229 CTTAATAATC
59456239 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
59456269 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
59456298 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
59456318 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:59470082 original size:9 final size:9
Alignment explanation
Indices: 59470068--59470095 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
59470058 GAACAAGGGG
59470068 CTGTGCAAC
1 CTGTGCAAC
59470077 CTGTGCAAC
1 CTGTGCAAC
59470086 CTGTGCAAC
1 CTGTGCAAC
59470095 C
1 C
59470096 AGCACAAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (9 bp):
CTGTGCAAC
Found at i:59477537 original size:50 final size:51
Alignment explanation
Indices: 59477472--59477709 Score: 218
Period size: 50 Copynumber: 4.7 Consensus size: 51
59477462 ACCGAAGCTC
*
59477472 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAA-CAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCTAACCAA
* * *
59477522 TCTGGTACATGTAGTAGCCTACACTAAGTACTACACA--CATGACCTAACCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCA--ACCTAACCAA
* * ** * * * *
59477573 -C-GGATATACGTAGTAGCTTGCACTTAGTACTACACATGTGATCGAAGCTA
1 TCTGG-TACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCTAACCAA
* * * * *
59477623 TCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACC-A
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCTAACCAA
* * * *
59477673 TCTAGTACACGTAGTAGCTTGCACATAGTACTGCACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
59477710 AGTGTTCTCG
Statistics
Matches: 148, Mismatches: 32, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
48 2 0.01
49 2 0.01
50 103 0.70
51 39 0.26
52 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (51 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCTAACCAA
Found at i:59477657 original size:101 final size:100
Alignment explanation
Indices: 59477476--59477709 Score: 263
Period size: 101 Copynumber: 2.3 Consensus size: 100
59477466 AAGCTCTCTG
* * * * **
59477476 GTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTGGTACATGTAGTAGCC
1 GTACACGTAGTAGCTTGCACTTAGTACTACACATGCAACCGAACAATCGGGTACACATAGTAGCC
*
59477541 TACACTAAGTACTACACACATGACCTAACCAACG-
66 TACACTAAGTACTACACACACGACCTAACCAACGA
* ** * * *
59477575 GATATACGTAGTAGCTTGCACTTAGTACTACACATGTGATCGAAGCTATCGGGTACGCATAGTAG
1 G-TACACGTAGTAGCTTGCACTTAGTACTACACATGCAACCGAA-CAATCGGGTACACATAGTAG
* ** * *
59477640 CCTACACTTAGTACTACACATGCGACCTAACCATCTA
64 CCTACACTAAGTACTACACACACGACCTAACCAACGA
* *
59477677 GTACACGTAGTAGCTTGCACATAGTACTGCACA
1 GTACACGTAGTAGCTTGCACTTAGTACTACACA
59477710 AGTGTTCTCG
Statistics
Matches: 111, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
99 1 0.01
100 35 0.32
101 74 0.67
102 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (100 bp):
GTACACGTAGTAGCTTGCACTTAGTACTACACATGCAACCGAACAATCGGGTACACATAGTAGCC
TACACTAAGTACTACACACACGACCTAACCAACGA
Found at i:59482946 original size:22 final size:22
Alignment explanation
Indices: 59482871--59482946 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
59482861 ACATGCATAT
*
59482871 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
59482893 ATGTGATATATGTG-A-ACAT-GCATA
1 ATGTGATA-A-G-GCAGA-ATGGC-CA
59482917 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
59482940 ATGTGAT
1 ATGTGAT
59482947 GAACGTGGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 16 0.38
23 9 0.21
24 8 0.19
25 9 0.21
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:59482966 original size:47 final size:47
Alignment explanation
Indices: 59482546--59482949 Score: 639
Period size: 47 Copynumber: 8.6 Consensus size: 47
59482536 GTATACATGA
*
59482546 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGT
1 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGT
*
59482593 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGT
1 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGT
*
59482640 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGT
1 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGT
*
59482687 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGT
1 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGT
*
59482734 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGT
1 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGT
*
59482781 GCTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGT
* * * * *
59482828 GATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGT
1 GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGT
* * *
59482875 GATAAGGCCGAATGGCCAATGTGAT-ATATGTGAACATGCATATATGT
1 GCTAAGGCCGAATGGCAAATGTGATGA-ATGTGAACATGCATATGTGT
* * *
59482922 GATAAGGCAGAATGGCCAATGTGATGAA
1 GCTAAGGCCGAATGGCAAATGTGATGAA
59482950 CGTGGATGTG
Statistics
Matches: 346, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 344 0.99
48 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
GCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGT
Found at i:59484756 original size:15 final size:15
Alignment explanation
Indices: 59484718--59484776 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
59484708 TATAGATAAC
* *
59484718 AAGAAA-CCAGGATT
1 AAGAAATCCAAGATA
*
59484732 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
59484747 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
59484762 AAAAAATCCAAGATA
1 AAGAAATCCAAGATA
59484777 CAATATCATA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
14 5 0.14
15 32 0.86
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:59489023 original size:28 final size:23
Alignment explanation
Indices: 59488805--59489048 Score: 287
Period size: 23 Copynumber: 10.6 Consensus size: 23
59488795 GAATCTATAA
* *
59488805 GCTACAATATAGTGGTAGCTTTG
1 GCTACAATACAGTGGTAGCTTCG
*
59488828 GCTAC-ATCTCAGTGGTAGCTTCG
1 GCTACAAT-ACAGTGGTAGCTTCG
* *
59488851 GCTACAATATAGTGGTAGCTTCA
1 GCTACAATACAGTGGTAGCTTCG
*
59488874 GCTACAATATAGTGGTAGCTTCG
1 GCTACAATACAGTGGTAGCTTCG
*
59488897 GCTAC-ATCTCAGTGGTAGCTTCG
1 GCTACAAT-ACAGTGGTAGCTTCG
59488920 GCTACAATACAGTGGTAGCTTCG
1 GCTACAATACAGTGGTAGCTTCG
* * *
59488943 GCTAC-ATCTCAGTGGTACCTTCA
1 GCTACAAT-ACAGTGGTAGCTTCG
*
59488966 GCTACAATACAGTGGTAGCTTTG
1 GCTACAATACAGTGGTAGCTTCG
59488989 GCTACAATACAGTGGTAGCTTCG
1 GCTACAATACAGTGGTAGCTTCG
** * *
59489012 GCTACGTTACAATGATAGCTTCG
1 GCTACAATACAGTGGTAGCTTCG
* *
59489035 GCTATATTACAGTG
1 GCTACAATACAGTG
59489049 TGGCACTTTG
Statistics
Matches: 190, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
22 6 0.03
23 178 0.94
24 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (23 bp):
GCTACAATACAGTGGTAGCTTCG
Found at i:59496991 original size:31 final size:31
Alignment explanation
Indices: 59496948--59497011 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
59496938 CCTTTTCATA
59496948 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
59496979 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
59497010 TT
1 TT
59497012 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:59497268 original size:24 final size:24
Alignment explanation
Indices: 59497218--59497298 Score: 137
Period size: 24 Copynumber: 3.4 Consensus size: 24
59497208 CTGAAGGCCT
59497218 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
59497242 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
59497266 AGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
59497290 AGCCCTTTT
1 AGCCCTTTT
59497299 GCACTTCTTC
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
23 18 0.33
24 37 0.67
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:59497369 original size:9 final size:9
Alignment explanation
Indices: 59497355--59497431 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
59497345 ATCTCGTTTG
59497355 CATATCATA
1 CATATCATA
*
59497364 CATATCATGTG
1 CATATCA--TA
59497375 CATATCATA
1 CATATCATA
* *
59497384 CATGTCATCTG
1 CATATCA--TA
59497395 CATATCATA
1 CATATCATA
*
59497404 CATATCATGTG
1 CATATCA--TA
59497415 CATATCATA
1 CATATCATA
59497424 CATATCAT
1 CATATCAT
59497432 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:59497376 original size:20 final size:20
Alignment explanation
Indices: 59497353--59497433 Score: 144
Period size: 20 Copynumber: 4.0 Consensus size: 20
59497343 ACATCTCGTT
59497353 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
* *
59497373 TGCATATCATACATGTCATC
1 TGCATATCATACATATCATG
59497393 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
59497413 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
59497433 T
1 T
59497434 TTATCAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
TGCATATCATACATATCATG
Found at i:59497498 original size:25 final size:25
Alignment explanation
Indices: 59497470--59497517 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
59497460 ATATATAAAC
* * *
59497470 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
59497495 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
59497518 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:59500829 original size:50 final size:48
Alignment explanation
Indices: 59500770--59501001 Score: 197
Period size: 50 Copynumber: 4.7 Consensus size: 48
59500760 CTAGTATGCA
* * * *
59500770 TAGTAGCCTGCACTTAATACTACACATACGACCTAATAATTTGG-TACATG
1 TAGTAGCCTGCACTTAGTACTACACAT--GACCTAACAA-TCGGATACAGG
*
59500820 TAGTAGCCTGCACTTAGTACTACACAGTGACCTAACCATCGGATACAGG
1 TAGTAGCCTGCACTTAGTACTACACA-TGACCTAACAATCGGATACAGG
* * * *
59500869 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGCTATCGGGTAC--G
1 TAGTAGCCTGCACTTAGTACTACACA--TGACCTAA-CAATCGGATACAGG
* * *
59500918 CA-TA-CCTGCACTTAGTACTACACATGCAACCTAACAATC-TAGTACAAG
1 TAGTAGCCTGCACTTAGTACTACACATG--ACCTAACAATCGGA-TACAGG
*
59500966 TAGTAGCCTGCACTTAGTGCTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACA--TGACCTAA
59501002 AACCATTTTA
Statistics
Matches: 152, Mismatches: 17, Indels: 26
0.78 0.09 0.13
Matches are distributed among these distances:
45 2 0.01
46 7 0.05
47 24 0.16
48 7 0.05
49 43 0.28
50 57 0.38
51 10 0.07
52 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGACCTAACAATCGGATACAGG
Found at i:59500943 original size:47 final size:49
Alignment explanation
Indices: 59500771--59501047 Score: 172
Period size: 50 Copynumber: 5.6 Consensus size: 49
59500761 TAGTATGCAT
* ** * ** * *
59500771 AGTAGCCTGCACTTAATACTACACATACGACCTAATAATTTGG-TACATGT
1 AGTAGCCTGCACTTAGTACTACACATGTGACCGAACCA-TCGGATACA-GC
* *
59500821 AGTAGCCTGCACTTAGTACTACACA-GTGACCTAACCATCGGATACAGGT
1 AGTAGCCTGCACTTAGTACTACACATGTGACCGAACCATCGGATACA-GC
* * *
59500870 AGTAGCCTGCACTTAGTACTACACATGTGATCGAAGCTATCGGGTAC-GC
1 AGTAGCCTGCACTTAGTACTACACATGTGACCGAA-CCATCGGATACAGC
** * * * *
59500919 A-TA-CCTGCACTTAGTACTACACATGCAACCTAACAATC-TAGTACAAGT
1 AGTAGCCTGCACTTAGTACTACACATGTGACCGAACCATCGGA-TAC-AGC
* * * *** *
59500967 AGTAGCCTGCACTTAGTGCTACACACGTGACCTAAAACCATTTTAAACA-C
1 AGTAGCCTGCACTTAGTACTACACATGTGACC--GAACCATCGGATACAGC
*
59501017 ATAGTAGCCTGCACATAGTACTACACATGTG
1 --AGTAGCCTGCACTTAGTACTACACATGTG
59501048 TTCTCACAAA
Statistics
Matches: 182, Mismatches: 32, Indels: 24
0.76 0.13 0.10
Matches are distributed among these distances:
46 7 0.04
47 26 0.14
48 7 0.04
49 43 0.24
50 54 0.30
51 10 0.05
52 33 0.18
53 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (49 bp):
AGTAGCCTGCACTTAGTACTACACATGTGACCGAACCATCGGATACAGC
Found at i:59503685 original size:44 final size:43
Alignment explanation
Indices: 59503637--59503754 Score: 114
Period size: 42 Copynumber: 2.7 Consensus size: 43
59503627 GCCTATGACG
* * * *
59503637 TTGGCATCGACT-TCTGTTTTCCGTGTAAGACGATGTTTGGGACA
1 TTGGCATCGA-TATCTGATTT-CGTGTAAGACCATGTGTAGGACA
*
59503681 TTGGCATC-ATATCTGATTTCGTGTAAGACCCTGTGTAGGACA
1 TTGGCATCGATATCTGATTTCGTGTAAGACCATGTGTAGGACA
* * * * *
59503723 GTGGCATCGATGTTTGATTACATGTAAGACCA
1 TTGGCATCGATATCTGATTTCGTGTAAGACCA
59503755 CGTCTGGGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 27 0.44
43 26 0.43
44 8 0.13
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (43 bp):
TTGGCATCGATATCTGATTTCGTGTAAGACCATGTGTAGGACA
Found at i:59515340 original size:37 final size:37
Alignment explanation
Indices: 59515290--59515368 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
59515280 TTATTACGAA
* * *
59515290 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACAAGAAGTCATCGG
*
59515327 GTCTTACCCGGACAAAATTCCCACAAGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACAAGAAGTCATCGG
59515364 GTCTT
1 GTCTT
59515369 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACAAGAAGTCATCGG
Found at i:59515565 original size:47 final size:47
Alignment explanation
Indices: 59515487--59515725 Score: 361
Period size: 47 Copynumber: 5.1 Consensus size: 47
59515477 CCCTTCGGGA
* * * * * * *
59515487 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
59515534 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
59515581 CTTATTACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
59515628 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
59515675 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
59515722 CTTA
1 CTTA
59515726 CTATCATTTC
Statistics
Matches: 174, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:59524606 original size:48 final size:48
Alignment explanation
Indices: 59524544--59524678 Score: 159
Period size: 48 Copynumber: 2.8 Consensus size: 48
59524534 ATTCAAGAGT
* * *
59524544 CTCGCACTCTAAGTGCCAATATCATGGCCCGAAGCCAACTCAATAT-AA-
1 CTCGCACCCAAAGTGCCAATATCATGGCCCGAAGCCAAATC--TATGAAC
* *
59524592 CTCGCACCCAAAGTGCTAATATCATGGCCCGAAGCCAAATCTGTGAAC
1 CTCGCACCCAAAGTGCCAATATCATGGCCCGAAGCCAAATCTATGAAC
* *
59524640 CTCGCACCCGAAGTGCCGATATCATAGG-CCGAAGCCAAA
1 CTCGCACCCAAAGTGCCAATATCAT-GGCCCGAAGCCAAA
59524679 AGAATGTATC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
46 2 0.03
47 2 0.03
48 70 0.92
49 2 0.03
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (48 bp):
CTCGCACCCAAAGTGCCAATATCATGGCCCGAAGCCAAATCTATGAAC
Found at i:59524914 original size:28 final size:27
Alignment explanation
Indices: 59524881--59524936 Score: 60
Period size: 28 Copynumber: 2.0 Consensus size: 27
59524871 CGACAGGGGT
*
59524881 CAACTAATCT-GAAACTTTGTTCTTTCC
1 CAACT-ATCTCGAAACCTTGTTCTTTCC
* *
59524908 CNAACTATTTCGTAACCTTGTTCTTTCC
1 C-AACTATCTCGAAACCTTGTTCTTTCC
59524936 C
1 C
59524937 TAATCTAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.41
Consensus pattern (27 bp):
CAACTATCTCGAAACCTTGTTCTTTCC
Found at i:59526428 original size:15 final size:16
Alignment explanation
Indices: 59526392--59526421 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
59526382 ACATATCATT
59526392 TATTTCATTATACCAA
1 TATTTCATTATACCAA
59526408 TATTTCA-TATACCA
1 TATTTCATTATACCA
59526422 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTTCATTATACCAA
Found at i:59528105 original size:48 final size:48
Alignment explanation
Indices: 59528034--59529017 Score: 1779
Period size: 48 Copynumber: 20.5 Consensus size: 48
59528024 NNNNNNNNNN
* *
59528034 TATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
* * * *
59528082 TATATATATGTGGTAAAGTCGAATGGCTAATGTGAAATATATATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
* *
59528130 TATGTATCTGTGGTAAAGCCGAATGGCTAGAGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
* *
59528178 TATGTATATGTGGTAAAGCTGAATGGCTAGAGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528226 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528274 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528322 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528370 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528418 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528466 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528514 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528562 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528610 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528658 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528706 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
59528754 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
* * *
59528802 TATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
* *
59528850 TATGTATATGTGGTAAAGCTGAATGGCTAGAGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
* *
59528898 TATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
* * *
59528946 TATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
*
59528994 TATGTATGTGTGGTAAAGCCGAAT
1 TATGTATATGTGGTAAAGCCGAAT
59529018 TTGGTAAAGC
Statistics
Matches: 904, Mismatches: 32, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 904 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
Found at i:59529024 original size:15 final size:15
Alignment explanation
Indices: 59529004--59529032 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
59528994 TATGTATGTG
59529004 TGGTAAAGCCGAATT
1 TGGTAAAGCCGAATT
59529019 TGGTAAAGCCGAAT
1 TGGTAAAGCCGAAT
59529033 GGCTAATGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (15 bp):
TGGTAAAGCCGAATT
Found at i:59529455 original size:75 final size:75
Alignment explanation
Indices: 59529332--59529481 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
59529322 TTCACAGTAA
*
59529332 CAATTGGTAATAAATACGTTCAGTGCGTTAAGTTGGTCAAGTATGTATTTTGAGATTATATTTAA
1 CAATTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAAGTATGTATTTTGAGATTATATTTAA
59529397 GCTTGATTTG
66 GCTTGATTTG
*
59529407 CAATTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAGGTATGTATTTTGAGATTATATTTAA
1 CAATTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAAGTATGTATTTTGAGATTATATTTAA
59529472 GCTTGATTTG
66 GCTTGATTTG
59529482 GACTAAATCA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (75 bp):
CAATTGGTAATAAATACGTTCAATGCGTTAAGTTGGTCAAGTATGTATTTTGAGATTATATTTAA
GCTTGATTTG
Found at i:59530515 original size:46 final size:47
Alignment explanation
Indices: 59530427--59530519 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 47
59530417 ATTTGAATTT
59530427 CGATTTGGATTGAATTATAAAGGGTATAAGTGATGCAATTTTGAAAG
1 CGATTTGGATTGAATTATAAAGGGTATAAGTGATGCAATTTTGAAAG
* *
59530474 CGATTTGGATTGGATTAT-AAGGTTATAAGTGATGCAATTTTGAAAG
1 CGATTTGGATTGAATTATAAAGGGTATAAGTGATGCAATTTTGAAAG
59530520 AGTGTTATGA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 27 0.61
47 17 0.39
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.35
Consensus pattern (47 bp):
CGATTTGGATTGAATTATAAAGGGTATAAGTGATGCAATTTTGAAAG
Found at i:59530721 original size:40 final size:40
Alignment explanation
Indices: 59530666--59531031 Score: 597
Period size: 40 Copynumber: 9.2 Consensus size: 40
59530656 GAGAATTGAG
*
59530666 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
59530706 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
59530746 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
59530786 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
59530826 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
59530866 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
59530906 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
59530946 AGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * *
59530986 GGTGTTATATCCGGGCTAGGTCCCAAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
59531026 GGTGAT
1 AGTGAT
59531032 GTGTATTCAG
Statistics
Matches: 306, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 306 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:59531243 original size:25 final size:25
Alignment explanation
Indices: 59531193--59531243 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
59531183 TGTGTAACAA
* *
59531193 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
59531218 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
59531243 C
1 C
59531244 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:59535087 original size:48 final size:48
Alignment explanation
Indices: 59535025--59535453 Score: 714
Period size: 48 Copynumber: 8.9 Consensus size: 48
59535015 TATATATGTG
59535025 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
59535073 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG--TATA
59535123 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* ** * *
59535171 TATGGTAAAGAAGAATGGCTAATGTGAAATATATATATGAGATTTGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATA
59535221 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
59535269 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
59535317 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
59535365 TGTGGTAAATCCGAATGGCTAATGTGAAATATGCATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
59535413 TTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
59535454 GTGTGTATAT
Statistics
Matches: 355, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
48 263 0.74
49 4 0.01
50 88 0.25
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:59535177 original size:98 final size:98
Alignment explanation
Indices: 59535025--59535453 Score: 699
Period size: 98 Copynumber: 4.4 Consensus size: 98
59535015 TATATATGTG
59535025 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
59535090 GCTAATGTGAAATATGTATGAGAAATGTATATA
66 GCTAATGTGAAATATGTATGAGATATGTATATA
* **
59535123 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGAAGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* *
59535188 GCTAATGTGAAATATATATATGAGAT-T-TGTATA
66 GCTAATGTG-AA-ATATGTATGAGATATGTATATA
59535221 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
59535286 GCTAGTGTGAAATATGTATGAGATATG--TATA
66 GCTAATGTGAAATATGTATGAGATATGTATATA
* *
59535317 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAATCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
59535382 GCTAATGTGAAATATGCATGAGATATGTATAT-
66 GCTAATGTGAAATATGTATGAGATATGTATATA
*
59535414 T-TGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
59535454 GTGTGTATAT
Statistics
Matches: 309, Mismatches: 16, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
96 142 0.46
97 4 0.01
98 149 0.48
99 3 0.01
100 11 0.04
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (98 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAATGTGAAATATGTATGAGATATGTATATA
Found at i:59535647 original size:37 final size:37
Alignment explanation
Indices: 59535594--59535696 Score: 163
Period size: 37 Copynumber: 2.8 Consensus size: 37
59535584 GGAAATATAT
59535594 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT-G
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TCG
* *
59535631 TCTGGGTAAGGCCCGATGACTACGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTCG
*
59535668 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
59535697 GGACTATTCG
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 1 0.02
37 59 0.98
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTCG
Found at i:59536753 original size:24 final size:24
Alignment explanation
Indices: 59536704--59536753 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
59536694 AATCAATGTC
* **
59536704 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAACACT
59536728 AAATATATTATACTAATAAACACT
1 AAATATATTATACTAATAAACACT
59536752 AA
1 AA
59536754 TCTTCTAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATATATTATACTAATAAACACT
Found at i:59548357 original size:87 final size:89
Alignment explanation
Indices: 59548223--59548394 Score: 235
Period size: 87 Copynumber: 2.0 Consensus size: 89
59548213 ATAAACTACA
* * *
59548223 GGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTCATTTTT-GACAACAAAATCAAAA
1 GGAATAAATCCCAAAACAGATTTTATTTAATTTTAATTACTCATTTTTGGA-AACAAAATAAAAA
* *
59548287 -TGTAAT-AAATCTGTTGAACGATG
65 TTGGAATAAAATCCGTTGAACGATG
* *
59548310 GGAATAAATCCCAAAACAGATTTTATTTTAATTTTAA-TACTCGTTTTTGGAAATAAAATAAAAA
1 GGAATAAATCCCAAAACAGATTTTA-TTTAATTTTAATTACTCATTTTTGGAAACAAAATAAAAA
59548374 TTGGAATAAAATCCGTTGAAC
65 TTGGAATAAAATCCGTTGAAC
59548395 AGCGGTGAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
87 44 0.59
88 18 0.24
89 12 0.16
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.35
Consensus pattern (89 bp):
GGAATAAATCCCAAAACAGATTTTATTTAATTTTAATTACTCATTTTTGGAAACAAAATAAAAAT
TGGAATAAAATCCGTTGAACGATG
Found at i:59548499 original size:83 final size:78
Alignment explanation
Indices: 59548400--59548579 Score: 183
Period size: 73 Copynumber: 2.3 Consensus size: 78
59548390 TGAACAGCGG
* * * *
59548400 TGAAAGGGGTTTTATTTAACTTTAATTTCCCATTTGGAAATAAAAAAATAGAATAAAATCTATTG
1 TGAAACGGATTTTATTTAACTTTAATTT--AATTTGG--A-AAAAAAATAGAATAAAATCTATTA
59548465 AACGGGGGGAATAAATCC
61 AACGGGGGGAATAAATCC
* * * *
59548483 TGAAACGGATTTTATTT-AC--T--TTTAATTTGGAAACAAAATCGAATAAAGTCTATTAAATGG
1 TGAAACGGATTTTATTTAACTTTAATTTAATTTGGAAAAAAAATAGAATAAAATCTATTAAACGG
*
59548543 TGGGAATAAATCC
66 GGGGAATAAATCC
*
59548556 TGAAACAGATTTTATTTAA-TTTAA
1 TGAAACGGATTTTATTTAACTTTAA
59548580 AAATTTATTT
Statistics
Matches: 82, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
73 52 0.63
74 2 0.02
75 1 0.01
76 6 0.07
78 3 0.04
80 1 0.01
82 2 0.02
83 15 0.18
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (78 bp):
TGAAACGGATTTTATTTAACTTTAATTTAATTTGGAAAAAAAATAGAATAAAATCTATTAAACGG
GGGGAATAAATCC
Found at i:59550252 original size:27 final size:27
Alignment explanation
Indices: 59550214--59550268 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
59550204 TCTCCTAAGT
59550214 ATAAAAACATGAATTTAAAGGATTAGA
1 ATAAAAACATGAATTTAAAGGATTAGA
59550241 ATAAAAACATGAATTTAAAGGATTAGA
1 ATAAAAACATGAATTTAAAGGATTAGA
59550268 A
1 A
59550269 GCATAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.56, C:0.04, G:0.15, T:0.25
Consensus pattern (27 bp):
ATAAAAACATGAATTTAAAGGATTAGA
Found at i:59574614 original size:21 final size:21
Alignment explanation
Indices: 59574590--59574640 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
59574580 TTTCCATCGT
59574590 TGCTGCCTCTGCCTCCCTCGC
1 TGCTGCCTCTGCCTCCCTCGC
* * *
59574611 TGCTACCGCTGCCTCCCTCTC
1 TGCTGCCTCTGCCTCCCTCGC
59574632 TGCTGCCTC
1 TGCTGCCTC
59574641 CACTCTAAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.51, G:0.18, T:0.29
Consensus pattern (21 bp):
TGCTGCCTCTGCCTCCCTCGC
Done.