Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 182 of 276
Found at i:59825366 original size:41 final size:43
Alignment explanation
Indices: 59825318--59825398 Score: 112
Period size: 41 Copynumber: 1.9 Consensus size: 43
59825308 TCGATGCCAC
*
59825318 TGTCCCAGACAGGGTCGTACATG-AATCAAATA-CGATGCTGA
1 TGTCCCAGACAGGGTCGTACACGTAATCAAATATCGATGCTGA
* * *
59825359 TGTCCCAGACATGGTCTTACACGTAATCACATATCGATGC
1 TGTCCCAGACAGGGTCGTACACGTAATCAAATATCGATGC
59825399 CAACATCCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 20 0.59
42 8 0.24
43 6 0.18
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACAGGGTCGTACACGTAATCAAATATCGATGCTGA
Found at i:59827783 original size:33 final size:33
Alignment explanation
Indices: 59827714--59827784 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
59827704 CTCAACCCTT
* **
59827714 ATCAGAATCAATTGGGCCTAGCCCATTCTCAAA
1 ATCAGAATCAATTAGGCCTAGCCCATTAACAAA
*
59827747 ATCAGTAA-CAATTAGGCCTAGCCCATTAACAGA
1 ATCAG-AATCAATTAGGCCTAGCCCATTAACAAA
59827780 ATCAG
1 ATCAG
59827785 GTGGGCTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (33 bp):
ATCAGAATCAATTAGGCCTAGCCCATTAACAAA
Found at i:59827995 original size:22 final size:22
Alignment explanation
Indices: 59827952--59827996 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
59827942 CGCTAAGTCA
*
59827952 ACAGAACGGCTCAATGCCGTAG
1 ACAGAACGGCTCAACGCCGTAG
* * *
59827974 ACAGGACGGCTGAACGCGGTAG
1 ACAGAACGGCTCAACGCCGTAG
59827996 A
1 A
59827997 TATCACAGCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.24, G:0.33, T:0.11
Consensus pattern (22 bp):
ACAGAACGGCTCAACGCCGTAG
Found at i:59835700 original size:43 final size:42
Alignment explanation
Indices: 59835598--59835718 Score: 136
Period size: 41 Copynumber: 2.9 Consensus size: 42
59835588 ACATATCGAT
* * *
59835598 AAATCGATGCCACTGTCCCAGACAGGGTCTTACATGAATCAA
1 AAATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCAA
* ** *
59835640 ATA-CGATGCTGATGTCCCATACATGGTCTTACACGTAATCAA
1 AAATCGATGCCAATGTCCCAGACATGGTCTTACACG-AATCAA
* **
59835682 AAATCGATGCCAAAGTCCCAGATGTGGTCTTACACGA
1 AAATCGATGCCAATGTCCCAGACATGGTCTTACACGA
59835719 GAACACATAT
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 26 0.41
42 11 0.17
43 26 0.41
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
AAATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCAA
Found at i:59836915 original size:40 final size:40
Alignment explanation
Indices: 59836871--59836987 Score: 216
Period size: 40 Copynumber: 2.9 Consensus size: 40
59836861 AATTGTGCTA
59836871 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGG
1 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGG
59836911 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGG
1 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGG
* *
59836951 GTTATTATAACCAGGCTAAGTCCCGAAGGCATTCGTG
1 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTG
59836988 CTGGTTGTTA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (40 bp):
GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGG
Found at i:59855258 original size:20 final size:20
Alignment explanation
Indices: 59855229--59855273 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
59855219 AACAAATGTA
* *
59855229 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
59855249 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
59855269 TTCAT
1 TTCAT
59855274 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:59855885 original size:5 final size:5
Alignment explanation
Indices: 59855875--59855899 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
59855865 AATACAGATC
59855875 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
59855900 TTTTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:59858491 original size:38 final size:38
Alignment explanation
Indices: 59858444--59858523 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
59858434 GGTTTAGTGG
* * *
59858444 CTAGTAGGCTTAGTGCAT-GTGTTAATT-AGGCTTTGTAC
1 CTAGAAGGCTCAGTGC-TGGTGTT-ATTCAGGCTTAGTAC
*
59858482 CTAGAAGGCTCAGTGCTGGTGTTATTCAGGCTTAGTGC
1 CTAGAAGGCTCAGTGCTGGTGTTATTCAGGCTTAGTAC
59858520 CTAG
1 CTAG
59858524 CAAGCTTGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
37 4 0.11
38 32 0.89
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.35
Consensus pattern (38 bp):
CTAGAAGGCTCAGTGCTGGTGTTATTCAGGCTTAGTAC
Found at i:59860572 original size:43 final size:44
Alignment explanation
Indices: 59860448--59860609 Score: 149
Period size: 43 Copynumber: 3.8 Consensus size: 44
59860438 GGATAGCTTG
*
59860448 TACAATGCCAACATCCCAGACT-TGGTCTTACATGT-AATCAAA
1 TACAATGCCAACATCCCAGACTGTGGTCTTACACGTAAATCAAA
** *** * *
59860490 TATTGATGCCATTGTCCCAGACAG-GGTCTTATACG-AAATCAAA
1 TA-CAATGCCAACATCCCAGACTGTGGTCTTACACGTAAATCAAA
*
59860533 TACAATGCCAACGTCCCAGA-TGTGGTCTTACACGTAAATCATAA
1 TACAATGCCAACATCCCAGACTGTGGTCTTACACGTAAATCA-AA
* *
59860577 GT-CGATGCCAACATCCCAGAC-CTGGTCTTACAC
1 -TACAATGCCAACATCCCAGACTGTGGTCTTACAC
59860610 AAGAACACAT
Statistics
Matches: 95, Mismatches: 17, Indels: 14
0.75 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 38 0.40
44 29 0.31
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (44 bp):
TACAATGCCAACATCCCAGACTGTGGTCTTACACGTAAATCAAA
Found at i:59871902 original size:25 final size:25
Alignment explanation
Indices: 59871864--59871933 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
59871854 CAGGCCTACT
*
59871864 TTCATAGCTCGTGTGAGCATTCTAA
1 TTCACAGCTCGTGTGAGCATTCTAA
* * * *
59871889 TTCACAGCTTGTGTGAACATTTTGA
1 TTCACAGCTCGTGTGAGCATTCTAA
59871914 TTCACAGCTCGTGTGAGCAT
1 TTCACAGCTCGTGTGAGCAT
59871934 ACATGTACAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATTCTAA
Found at i:59885454 original size:43 final size:45
Alignment explanation
Indices: 59885359--59885481 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 45
59885349 ATTGAGATGT
* * *
59885359 GATTACATGTAAAACCATGTCTGGGACATTGGCAT--TATATTAA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAATAA
*
59885402 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAATAA
* * * * *
59885445 GATTTCGTGTAAGACCCTATCTGGCACAGTGGCATCG
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
59885482 ATATGTGATA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 65 0.94
44 3 0.04
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (45 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAATAA
Found at i:59897499 original size:32 final size:33
Alignment explanation
Indices: 59897446--59897523 Score: 92
Period size: 32 Copynumber: 2.4 Consensus size: 33
59897436 TGGCCTTGCC
59897446 ATGGTCTTACACTCATAATGCCATA-ACCA-ATT
1 ATGGTCTTACACTCATAATGCCATAGACCAGA-T
*
59897478 ATGGTCTTATCA-TCA-AGATGCCATAGCCCAGAT
1 ATGGTCTTA-CACTCATA-ATGCCATAGACCAGAT
59897511 ATGGTCTTACACT
1 ATGGTCTTACACT
59897524 TATACATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
31 1 0.03
32 22 0.55
33 16 0.40
34 1 0.03
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACACTCATAATGCCATAGACCAGAT
Found at i:59897619 original size:105 final size:100
Alignment explanation
Indices: 59897464--59897655 Score: 260
Period size: 105 Copynumber: 1.9 Consensus size: 100
59897454 ACACTCATAA
59897464 TGCCATAACCAATTATGGTCTTATCATCAAGATGCCATAGCCCAGATATGGTCTTACACTTATAC
1 TGCCATAACCAATTATGGTCTTATCATCAAGATGCCATAGCCCAGATATGGTCTTACA-TT-TA-
*
59897529 ATATACTGTCATGGTCCAACCATGGTCTTACGTTCACGG
63 A-ATACTGCCATGGTCCAACCATGGTCTTACGTTCACGG
* * * *
59897568 TGCCATAATCCAGTTATGGTCTTTTCACTGAA-ATGCCATAGCCCAGCTATGGTCTTACATTTAA
1 TGCCATAA-CCAATTATGGTCTTATCA-TCAAGATGCCATAGCCCAGATATGGTCTTACATTTAA
* *
59897632 ATATTGCCATTGTCCAACCATGGT
64 ATACTGCCATGGTCCAACCATGGT
59897656 ATTATCTGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
101 21 0.27
102 1 0.01
103 2 0.03
104 10 0.13
105 42 0.53
106 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (100 bp):
TGCCATAACCAATTATGGTCTTATCATCAAGATGCCATAGCCCAGATATGGTCTTACATTTAAAT
ACTGCCATGGTCCAACCATGGTCTTACGTTCACGG
Found at i:59899009 original size:3 final size:3
Alignment explanation
Indices: 59899001--59899027 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
59898991 GGATATTTTG
59899001 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
59899028 TAGTATGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:59909561 original size:48 final size:48
Alignment explanation
Indices: 59909500--59909824 Score: 329
Period size: 48 Copynumber: 6.8 Consensus size: 48
59909490 GAGTTGATGA
* * * * *
59909500 GATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATATTT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * *
59909548 GATCCCATGTAAGACCATGTCTAGGACATGGTATTAGCATCGTTATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* *
59909596 GATTCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* *
59909644 GATCCAATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* ** * * *
59909692 AAGTATCGTGTAAGACCATAG-CTGGG-CTATCGGC-TTCG-AT--ATGTGT
1 GA-TCCCATGTAAGACCAT-GTCTGGGAC-AT-GGCATTGGCATCGATATGT
* * *
59909738 GATCCCATGTAAGACAATGTCTGGGGCATGGCATTGGCATCGATAAGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * * *
59909786 GGTCCCATGTAAGACCATATCCGAGATATGGCATTGGCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
59909825 CCCTACTATG
Statistics
Matches: 227, Mismatches: 40, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
44 4 0.02
45 22 0.10
46 8 0.04
48 167 0.74
49 22 0.10
50 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:59911761 original size:16 final size:16
Alignment explanation
Indices: 59911740--59911770 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
59911730 TAGAATGACC
59911740 GTAACTGAATACGAGT
1 GTAACTGAATACGAGT
59911756 GTAACTGAATACGAG
1 GTAACTGAATACGAG
59911771 CGTGAGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.23
Consensus pattern (16 bp):
GTAACTGAATACGAGT
Found at i:59917103 original size:48 final size:48
Alignment explanation
Indices: 59917051--59917270 Score: 189
Period size: 48 Copynumber: 4.6 Consensus size: 48
59917041 ACATCCCGTA
* *
59917051 TAAGACAATATCTGGGATATGGCATCGGCATCGATATGTGATCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCCCATG
* * * * **
59917099 TAAGACCAT-TCTCAGGACATGGCATTGGCATCGATATGAGAGCATTATG
1 TAAGACCATATCT-GGGATATGGCATTGGCATCGATATGTGATC-CCATG
** * * *
59917148 TAAGACCATGGCTGGGCTATCGGC-TTCG-AT--ATGTGTGATCCCATG
1 TAAGACCATATCTGGGATAT-GGCATTGGCATCGATATGTGATCCCATG
* ** * * * *
59917193 TAAGACCATGTCTGGGGCATGGCATTGGCATCTATAAGTGGTCCCATA
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCCCATG
*
59917241 TAAGACCATATCCGGGATATGGCATTGGCA
1 TAAGACCATATCTGGGATATGGCATTGGCA
59917271 CCCTACTATG
Statistics
Matches: 134, Mismatches: 30, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
44 3 0.02
45 23 0.17
46 9 0.07
47 3 0.02
48 72 0.54
49 19 0.14
50 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCCCATG
Found at i:59920665 original size:43 final size:43
Alignment explanation
Indices: 59920615--59920825 Score: 241
Period size: 43 Copynumber: 4.9 Consensus size: 43
59920605 ATTGAGATGA
* *
59920615 GATTACATGTAAGACCATGTCTGGGACATTAGCATTGTATTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTAT
* *
59920658 GATTACATGTAAGACCATGTCTGGGACATTAGCATTGTATTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTAT
* *
59920701 GATTACATGTAAGACCATGTCGGGGACATTGGCACCAT-TA-TAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCA--TTGTATTAT
* * * * *
59920744 GATTTCGTGTAAGACCACGTATGGGACGTTGGCATTG-ATATAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TAT
* * *
59920787 GATAACATGTATGACCATGTCTGGGATA-TGGCATTGTAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
59920826 AAGCTTTTCG
Statistics
Matches: 143, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.01
42 8 0.06
43 130 0.91
44 2 0.01
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTAT
Found at i:59922903 original size:48 final size:48
Alignment explanation
Indices: 59922846--59923090 Score: 241
Period size: 48 Copynumber: 5.2 Consensus size: 48
59922836 AATCCCGGAT
* *
59922846 ATGGTCTTACATGGGACCACTTATCGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
* *
59922894 ATGGTCTTACATGGGATCACATATTGAAGCCAAT---A-G-CCCAG-C
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
*** * *
59922936 TATGGTCTTACACAATGTTCTCATATCGATGCCAATGCCATGTCCCAGAC
1 -ATGGTCTTACA-TGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
* ** * *
59922986 ATAGTCTTACATAAGATCACATAACGATGCCAATGACATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
* * * ** * *
59923034 ATGGTATTACATGGGATCACTTATTGATGCTGATGCCATATCCCAGAT
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
59923082 ATGGTCTTA
1 ATGGTCTTA
59923091 TACAAGATCT
Statistics
Matches: 158, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
42 1 0.01
43 16 0.10
44 17 0.11
45 1 0.01
47 1 0.01
48 106 0.67
49 15 0.09
50 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
Found at i:59930512 original size:48 final size:48
Alignment explanation
Indices: 59930452--59930575 Score: 158
Period size: 48 Copynumber: 2.6 Consensus size: 48
59930442 CTTGGCGTCC
*
59930452 TGTCCCAAACATGGTCTTACATGGGATCACATAACAATGCCAATGCCA
1 TGTCCCAGACATGGTCTTACATGGGATCACATAACAATGCCAATGCCA
* * * * *
59930500 TGTCCCAGACATGGTCTTACATAGGTTCACATATCGATGCCGATGCCA
1 TGTCCCAGACATGGTCTTACATGGGATCACATAACAATGCCAATGCCA
* * * *
59930548 TATCCCAGATATGGTCTTATACGGGATC
1 TGTCCCAGACATGGTCTTACATGGGATC
59930576 TCATTAACCC
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
TGTCCCAGACATGGTCTTACATGGGATCACATAACAATGCCAATGCCA
Found at i:59930935 original size:30 final size:30
Alignment explanation
Indices: 59930901--59930957 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
59930891 CATAAATCAT
*
59930901 ACTTTCACAAAATTACAATTTTGCCCCTAA
1 ACTTTCACAAAATTACAATTTGGCCCCTAA
* * *
59930931 ACTTTCACATATTTACACTTTGGCCCC
1 ACTTTCACAAAATTACAATTTGGCCCC
59930958 AAAGCTCGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (30 bp):
ACTTTCACAAAATTACAATTTGGCCCCTAA
Found at i:59933353 original size:30 final size:30
Alignment explanation
Indices: 59933317--59933384 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
59933307 CGAATTACGA
* * *
59933317 ACGAGAATTTGTGAGATTAAGTTAATGTGC
1 ACGAGAATTTGTGAGATTAAATCAATATGC
59933347 ACGAGAATTTGTGAGATTAAATCAATATGC
1 ACGAGAATTTGTGAGATTAAATCAATATGC
*
59933377 ATGAGAAT
1 ACGAGAAT
59933385 GTGTTTCGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (30 bp):
ACGAGAATTTGTGAGATTAAATCAATATGC
Found at i:59936279 original size:35 final size:35
Alignment explanation
Indices: 59936240--59936312 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
59936230 ACACATTCTT
59936240 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
59936275 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
59936310 TAT
1 TAT
59936313 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:59940087 original size:16 final size:18
Alignment explanation
Indices: 59940060--59940114 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 18
59940050 ATGTAAGTGT
*
59940060 AAAAAAATATATATATAC
1 AAAACAATATATATATAC
59940078 AAAACAATATAAATGATATAC
1 AAAACAATAT--AT-ATATAC
59940099 AAAACAATATATATAT
1 AAAACAATATATATAT
59940115 GAATAAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 13 0.39
19 2 0.06
20 2 0.06
21 16 0.48
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (18 bp):
AAAACAATATATATATAC
Found at i:59940116 original size:23 final size:23
Alignment explanation
Indices: 59940066--59940116 Score: 81
Period size: 21 Copynumber: 2.3 Consensus size: 23
59940056 GTGTAAAAAA
59940066 ATATAT-ATATACAAAACAATAT
1 ATATATGATATACAAAACAATAT
59940088 A-A-ATGATATACAAAACAATAT
1 ATATATGATATACAAAACAATAT
59940109 ATATATGA
1 ATATATGA
59940117 ATAAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 2 0.08
21 18 0.69
22 2 0.08
23 4 0.15
ACGTcount: A:0.59, C:0.08, G:0.04, T:0.29
Consensus pattern (23 bp):
ATATATGATATACAAAACAATAT
Found at i:59940762 original size:25 final size:25
Alignment explanation
Indices: 59940734--59940783 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
59940724 CCATTGAGAT
59940734 TGGCTTAAAACGACGTCATTTCATA
1 TGGCTTAAAACGACGTCATTTCATA
*
59940759 TGGCTTAAAACGACGTCGTTTCATA
1 TGGCTTAAAACGACGTCATTTCATA
59940784 CATTTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (25 bp):
TGGCTTAAAACGACGTCATTTCATA
Found at i:59947523 original size:40 final size:40
Alignment explanation
Indices: 59947434--59947614 Score: 181
Period size: 40 Copynumber: 4.5 Consensus size: 40
59947424 CTCGTTCAAG
* **
59947434 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAA
* *
59947473 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA
* * * *
59947513 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA
* * * * *
59947553 TGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAA
59947594 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
59947615 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 32 0.27
40 75 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA
Found at i:59953080 original size:21 final size:22
Alignment explanation
Indices: 59953041--59953081 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
59953031 CTTTCAAATC
59953041 TCTGCACAAATTTGAGTTTTTT
1 TCTGCACAAATTTGAGTTTTTT
* *
59953063 TCTGGACAATTTTG-GTTTT
1 TCTGCACAAATTTGAGTTTT
59953082 CTTTTCTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.20, C:0.12, G:0.17, T:0.51
Consensus pattern (22 bp):
TCTGCACAAATTTGAGTTTTTT
Found at i:59953493 original size:16 final size:16
Alignment explanation
Indices: 59953472--59953541 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
59953462 TTTGGTTCAT
*
59953472 TGTAATGGAATAGGGC
1 TGTAATGGAATAGAGC
*
59953488 TGTAATTGG-ATGGAGC
1 TGTAA-TGGAATAGAGC
* *
59953504 TGTAATTGAATAAAGC
1 TGTAATGGAATAGAGC
59953520 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
59953536 TGTAAT
1 TGTAAT
59953542 AAGTAATTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
15 2 0.04
16 40 0.89
17 3 0.07
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:59953616 original size:44 final size:46
Alignment explanation
Indices: 59953523--59953616 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
59953513 ATAAAGCTGT
*
59953523 AATGGAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
***
59953569 AATGGAATAGAACTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
59953613 AATG
1 AATG
59953617 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
Found at i:59955059 original size:201 final size:200
Alignment explanation
Indices: 59954715--59955116 Score: 795
Period size: 201 Copynumber: 2.0 Consensus size: 200
59954705 TAACTTTCAA
59954715 ATGAATAGACTATCTATAGAGTTTGAGTTTAAGATTGGAATCCTGAATTCCTTTGACAAATGAAA
1 ATGAATAGACTATCTATAGAGTTTGAGTTTAAGATTGGAATCCTGAATTCCTTTGACAAATGAAA
59954780 AAGTCTTTGGCTCAAATTAAAGCACTGTTGCAATAAAATCAGCAGCTTGCGTGAAGCTAAAATAT
66 AAGTCTTTGGCTCAAATTAAAGCACTGTTGCAATAAAATCAGCAGCTTGCGTGAAGCTAAAATAT
59954845 TGAACCTGAAAATAGAAAACAATGGGAGAAAAACCCCTTGGGAGGAACCTAAAGGTTAAAAGTAT
131 TGAACCTGAAAATAGAAAACAATGGGAGAAAAACCCCTTGGGAGGAACCTAAAGGTTAAAAGTAT
59954910 GTTCT
196 GTTCT
59954915 ATGAATAGACTATCTATAGAGTTCTGAGTTTAAGATTGGAATCCTGAATTCCTTTGACAAATGAA
1 ATGAATAGACTATCTATAGAGTT-TGAGTTTAAGATTGGAATCCTGAATTCCTTTGACAAATGAA
59954980 AAAGTCTTTGGCTCAAATTAAAGCACTGTTGCAATAAAATCAGCAGCTTGCGTGAAGCTAAAATA
65 AAAGTCTTTGGCTCAAATTAAAGCACTGTTGCAATAAAATCAGCAGCTTGCGTGAAGCTAAAATA
59955045 TTGAACCTGAAAATAGAAAACAATGGGAGAAAAACCCCTTGGGAGGAACCTAAAGGTTAAAAGTA
130 TTGAACCTGAAAATAGAAAACAATGGGAGAAAAACCCCTTGGGAGGAACCTAAAGGTTAAAAGTA
59955110 TGTTCT
195 TGTTCT
59955116 A
1 A
59955117 CCACAACACG
Statistics
Matches: 201, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
200 23 0.11
201 178 0.89
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (200 bp):
ATGAATAGACTATCTATAGAGTTTGAGTTTAAGATTGGAATCCTGAATTCCTTTGACAAATGAAA
AAGTCTTTGGCTCAAATTAAAGCACTGTTGCAATAAAATCAGCAGCTTGCGTGAAGCTAAAATAT
TGAACCTGAAAATAGAAAACAATGGGAGAAAAACCCCTTGGGAGGAACCTAAAGGTTAAAAGTAT
GTTCT
Found at i:59967423 original size:18 final size:18
Alignment explanation
Indices: 59967400--59967436 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
59967390 TTCGAAGGCA
*
59967400 TACTAACTCGATATTGGT
1 TACTAACTCGACATTGGT
59967418 TACTAACTCGACATTGGT
1 TACTAACTCGACATTGGT
59967436 T
1 T
59967437 GCTAGGTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (18 bp):
TACTAACTCGACATTGGT
Found at i:59972737 original size:46 final size:46
Alignment explanation
Indices: 59972669--59972851 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
59972659 TATATATACA
* * * *
59972669 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
59972715 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
59972761 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTTCCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
59972807 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
59972852 ATACACTTCC
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:59972896 original size:47 final size:47
Alignment explanation
Indices: 59972825--59973062 Score: 343
Period size: 47 Copynumber: 5.1 Consensus size: 47
59972815 ACACATTTCG
* * * * * *
59972825 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
59972872 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
59972919 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
59972966 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * **
59973013 CATTTGCCATTCGGCCTTATCTCATATATGCACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
59973060 CAT
1 CAT
59973063 AAAATCCTAA
Statistics
Matches: 174, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.01
47 173 0.99
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:59972943 original size:22 final size:22
Alignment explanation
Indices: 59972915--59972989 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
59972905 GTTCACATTC
59972915 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
59972937 ATCACATATATGCATATTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
59972961 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
59972984 ATCACA
1 ATCACA
59972990 CATATGCATG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:59977341 original size:29 final size:29
Alignment explanation
Indices: 59977278--59977345 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
59977268 TAATCAACCG
*
59977278 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
59977307 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
59977336 CGCACACTTA
1 CGCACACTTA
59977346 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:59977458 original size:174 final size:174
Alignment explanation
Indices: 59977167--59977494 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
59977157 AACTCAAGGT
* * *
59977167 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
59977232 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
59977297 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
59977341 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
59977406 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
59977471 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
59977495 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:59977486 original size:29 final size:30
Alignment explanation
Indices: 59977447--59977525 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
59977437 CTTAATAATC
59977447 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
59977477 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
59977506 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
59977526 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:59990608 original size:18 final size:18
Alignment explanation
Indices: 59990585--59990641 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
59990575 TTTAAAAGAA
59990585 TGGGCTCACACGCCCATG
1 TGGGCTCACACGCCCATG
*
59990603 TGGGCTCACACGCCTATG
1 TGGGCTCACACGCCCATG
* * * *
59990621 TAGGCCCACGCGCCCGTG
1 TGGGCTCACACGCCCATG
59990639 TGG
1 TGG
59990642 CCCCCACTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.14, C:0.37, G:0.32, T:0.18
Consensus pattern (18 bp):
TGGGCTCACACGCCCATG
Found at i:59994816 original size:43 final size:43
Alignment explanation
Indices: 59994758--59994930 Score: 224
Period size: 43 Copynumber: 4.1 Consensus size: 43
59994748 TATTATAGCA
* *
59994758 TGCTAGGCTCAAAGGCCCGAATACACATCACCAGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCC
* * *
59994801 TGCTAGGCATGAAGGCCCGAATATACATCACCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCC
* * * *
59994844 TTCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCA
1 TGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCC
* * *
59994887 TGCTAGGCACGAAGGCCCGAATATA-AT-ACCAGCACTAGGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCC
59994928 TGC
1 TGC
59994931 GGGATTTATC
Statistics
Matches: 114, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 13 0.11
42 2 0.02
43 99 0.87
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
TGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCC
Found at i:60002129 original size:20 final size:20
Alignment explanation
Indices: 60002106--60002153 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
60002096 GGGGCACCGT
60002106 AGTGCAAACAAGGACACCAA
1 AGTGCAAACAAGGACACCAA
* * * *
60002126 AGTGTATACAAGGGCACCCA
1 AGTGCAAACAAGGACACCAA
60002146 AGTGCAAA
1 AGTGCAAA
60002154 TCTCGTACAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.44, C:0.23, G:0.23, T:0.10
Consensus pattern (20 bp):
AGTGCAAACAAGGACACCAA
Found at i:60006763 original size:40 final size:40
Alignment explanation
Indices: 60006682--60007619 Score: 1765
Period size: 40 Copynumber: 23.5 Consensus size: 40
60006672 CAACCAAGTA
* * * *
60006682 CCTTCGGGATTTAG-CCGGACATAACT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
*
60006721 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
60006761 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60006801 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60006841 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60006881 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60006921 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60006961 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007001 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007041 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007081 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007121 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007161 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007201 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007241 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007281 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007321 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007361 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007401 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007441 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007481 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60007521 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
60007561 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
60007601 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60007620 TTATCATCCG
Statistics
Matches: 886, Mismatches: 10, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
39 16 0.02
40 870 0.98
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60010718 original size:18 final size:18
Alignment explanation
Indices: 60010695--60010735 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
60010685 AACTCAATTC
* * *
60010695 ATTTATACATACTTAATA
1 ATTTATAAATACCTAACA
60010713 ATTTATAAATACCTAACA
1 ATTTATAAATACCTAACA
60010731 ATTTA
1 ATTTA
60010736 CACTGTCATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTTATAAATACCTAACA
Found at i:60014202 original size:31 final size:31
Alignment explanation
Indices: 60014147--60014209 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
60014137 CAAACCAACG
***
60014147 TGTGATGCATCATTATAGGTAGTAAACTCTT
1 TGTGATGCATCATTATAAACAGTAAACTCTT
* *
60014178 TGTGATGCATCGTTATAAACAGTAAATTCTT
1 TGTGATGCATCATTATAAACAGTAAACTCTT
60014209 T
1 T
60014210 CCCAAACTCC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (31 bp):
TGTGATGCATCATTATAAACAGTAAACTCTT
Found at i:60018831 original size:20 final size:20
Alignment explanation
Indices: 60018808--60018855 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
60018798 AGCTCCGTCC
60018808 AGCTCAACTCAGCTCCTTTG
1 AGCTCAACTCAGCTCCTTTG
** **
60018828 AGCTCATTTCAGCTTGTTTG
1 AGCTCAACTCAGCTCCTTTG
60018848 AGCTCAAC
1 AGCTCAAC
60018856 CAAGCTTACT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (20 bp):
AGCTCAACTCAGCTCCTTTG
Found at i:60021434 original size:6 final size:6
Alignment explanation
Indices: 60021409--60021495 Score: 59
Period size: 6 Copynumber: 13.8 Consensus size: 6
60021399 AGTGTTAAAG
** *
60021409 AAAGCAA AAAGAGA ATAAGAA AAAGAA AAATGAA ATTGAA AAA-AA AAGTGAA
1 AAAG-AA AAAGA-A A-AAGAA AAAGAA AAA-GAA AAAGAA AAAGAA AA-AGAA
* * * *
60021461 AAAGAA AAAGAG AAGGAA AAAGAT AAGGAA AAAGA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGA
60021496 TATTGAGATC
Statistics
Matches: 61, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
5 4 0.07
6 37 0.61
7 16 0.26
8 4 0.07
ACGTcount: A:0.71, C:0.01, G:0.21, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:60023570 original size:19 final size:19
Alignment explanation
Indices: 60023546--60023594 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
60023536 CTAGCTCATT
*
60023546 TCCAGCTCATCGAGCTCCG
1 TCCAGCTCAACGAGCTCCG
*
60023565 TCCAGCTCAACGAGCTTCG
1 TCCAGCTCAACGAGCTCCG
60023584 TCCAGCTCAAC
1 TCCAGCTCAAC
60023595 TCAGCTCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.20, C:0.41, G:0.18, T:0.20
Consensus pattern (19 bp):
TCCAGCTCAACGAGCTCCG
Found at i:60023610 original size:20 final size:20
Alignment explanation
Indices: 60023587--60023634 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
60023577 AGCTTCGTCC
*
60023587 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCCCATTTG
** *
60023607 AGCTCATTTCAGCCCGTTTG
1 AGCTCAACTCAGCCCATTTG
60023627 AGCTCAAC
1 AGCTCAAC
60023635 CAAGCTTACT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (20 bp):
AGCTCAACTCAGCCCATTTG
Found at i:60037912 original size:114 final size:114
Alignment explanation
Indices: 60037710--60037934 Score: 353
Period size: 114 Copynumber: 2.0 Consensus size: 114
60037700 ATCTGAAAAT
* *
60037710 ACATGGTACTTTTCACCAAACAAATAATGTCGCCATATTTTCAAAGCAAATACGATGGCGACTAA
1 ACATGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAAAGCAAATACGATGGCGACTAA
*
60037775 CTCGAGATCATGGGTTGGATAATTTCTCTCGTGTGGCTTCAATTGTTAA
66 CTCGAGATCATGGGTCGGATAATTTCTCTCGTGTGGCTTCAATTGTTAA
* *
60037824 ACATGGCACTTCTCACCAAATAAATAATGTCGCCATATTTTCAAGGCAAATACGATGGC-AGCTA
1 ACATGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAAAGCAAATACGATGGCGA-CTA
** * *
60037888 GTTCGAGATCATGGGTCGGGTAATTTTTCTCGTGTGGCTTCAATTGT
65 ACTCGAGATCATGGGTCGGATAATTTCTCTCGTGTGGCTTCAATTGT
60037935 CTCGACGCGT
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
113 1 0.01
114 100 0.99
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (114 bp):
ACATGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAAAGCAAATACGATGGCGACTAA
CTCGAGATCATGGGTCGGATAATTTCTCTCGTGTGGCTTCAATTGTTAA
Found at i:60042358 original size:40 final size:40
Alignment explanation
Indices: 60042279--60042534 Score: 355
Period size: 40 Copynumber: 6.5 Consensus size: 40
60042269 CAACCAAGTA
* *
60042279 CCTTCGGG-TTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
60042316 CCTTCGGGACTTAGCCCGGTTATAGTAACTGGCAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60042356 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
*
60042396 CCTTTGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
* * *
60042436 CCTTTGGGACTTAGCCCGTATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60042476 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60042516 CCTTCGGGACTT-GCCCGGA
1 CCTTCGGGACTTAGCCCGGA
60042535 ACTAGTCACT
Statistics
Matches: 200, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
37 8 0.04
38 5 0.03
39 21 0.10
40 164 0.82
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60048023 original size:54 final size:54
Alignment explanation
Indices: 60047933--60048163 Score: 268
Period size: 54 Copynumber: 4.3 Consensus size: 54
60047923 ATAAAAAGGA
* * * *
60047933 AAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTA-CCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCC-CATAAGGGC
* * * * ** *
60047987 AAAACAGTCATTTCACCTTATAAGGGCAGAATAGTCATTTTA-CCACGGAAGGTC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCC-CATAAGGGC
* * * *
60048041 AAAGCAGTCATTTTACCTCATAAAGGTAGAACAGCCATTTTATCCCATAAGGGG
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
*
60048095 AAAACAATCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
**
60048149 AAAACAACCATTTTA
1 AAAACAGTCATTTTA
60048164 TCGATTAAGG
Statistics
Matches: 149, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 147 0.99
55 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (54 bp):
AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
Found at i:60048165 original size:27 final size:27
Alignment explanation
Indices: 60047933--60048163 Score: 241
Period size: 27 Copynumber: 8.6 Consensus size: 27
60047923 ATAAAAAGGA
* *
60047933 AAAATAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
60047960 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* *
60047987 AAAACAGTCATTTCACCTTATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * * ** *
60048014 AGAATAGTCATTTTACCACGGAAGGTC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
60048041 AAAGCAGTCATTTTACCTCATAAAGGT
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
60048068 AGAACAGCCATTTTATCC-CATAAGGGG
1 AAAACAGTCATTTTA-CCTCATAAGGGC
* *
60048095 AAAACAATCATTTTACCTCATAAAGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
*
60048122 AGAACAGTCATTTTATCC-CATAAGGGC
1 AAAACAGTCATTTTA-CCTCATAAGGGC
**
60048149 AAAACAACCATTTTA
1 AAAACAGTCATTTTA
60048164 TCGATTAAGG
Statistics
Matches: 164, Mismatches: 37, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.01
27 158 0.96
28 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCTCATAAGGGC
Found at i:60051496 original size:6 final size:6
Alignment explanation
Indices: 60051487--60051539 Score: 74
Period size: 6 Copynumber: 8.8 Consensus size: 6
60051477 TGGCCCATTG
60051487 CAGTAA CAGTAAA CAGT-A CAGTAA CAGTAA CAGT-A CAGTAA CAGTAAA
1 CAGTAA CAGT-AA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGT-AA
60051535 CAGTA
1 CAGTA
60051540 TGTATCTCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
5 10 0.23
6 21 0.49
7 12 0.28
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:60051514 original size:11 final size:12
Alignment explanation
Indices: 60051487--60051539 Score: 74
Period size: 11 Copynumber: 4.4 Consensus size: 12
60051477 TGGCCCATTG
60051487 CAGTAACAGTAAA
1 CAGTAACAGT-AA
60051500 CAGT-ACAGTAA
1 CAGTAACAGTAA
60051511 CAGTAACAGT-A
1 CAGTAACAGTAA
60051522 CAGTAACAGTAAA
1 CAGTAACAGT-AA
60051535 CAGTA
1 CAGTA
60051540 TGTATCTCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
11 17 0.46
12 10 0.27
13 10 0.27
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (12 bp):
CAGTAACAGTAA
Found at i:60051520 original size:17 final size:18
Alignment explanation
Indices: 60051487--60051539 Score: 99
Period size: 17 Copynumber: 3.0 Consensus size: 18
60051477 TGGCCCATTG
60051487 CAGTAACAGTAAACAGTA
1 CAGTAACAGTAAACAGTA
60051505 CAGTAACAGT-AACAGTA
1 CAGTAACAGTAAACAGTA
60051522 CAGTAACAGTAAACAGTA
1 CAGTAACAGTAAACAGTA
60051540 TGTATCTCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 17 0.50
18 17 0.50
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTA
Found at i:60051899 original size:54 final size:54
Alignment explanation
Indices: 60051841--60052071 Score: 268
Period size: 54 Copynumber: 4.3 Consensus size: 54
60051831 ATAAAAAGGA
* * * *
60051841 AAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTA-CCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCC-CATAAGGGC
* * * * * * *
60051895 AAAATAGTCATTTCACCTTATAAGGGCAGAATAGTCATTTTA-CCACGTAAGGTC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCC-CATAAGGGC
* * * *
60051949 AAAGCAGTCATTTTACCTCATAAAGGTAGAACAGCCATTTTATCCCATAAGGGG
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
*
60052003 AAAACAATCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
**
60052057 AAAACAACCATTTTA
1 AAAACAGTCATTTTA
60052072 TCGATTAAGG
Statistics
Matches: 151, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 149 0.99
55 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
Found at i:60052073 original size:27 final size:27
Alignment explanation
Indices: 60051841--60052071 Score: 241
Period size: 27 Copynumber: 8.6 Consensus size: 27
60051831 ATAAAAAGGA
* *
60051841 AAAATAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
60051868 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
60051895 AAAATAGTCATTTCACCTTATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * * * *
60051922 AGAATAGTCATTTTACCACGTAAGGTC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
60051949 AAAGCAGTCATTTTACCTCATAAAGGT
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
60051976 AGAACAGCCATTTTATCC-CATAAGGGG
1 AAAACAGTCATTTTA-CCTCATAAGGGC
* *
60052003 AAAACAATCATTTTACCTCATAAAGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
*
60052030 AGAACAGTCATTTTATCC-CATAAGGGC
1 AAAACAGTCATTTTA-CCTCATAAGGGC
**
60052057 AAAACAACCATTTTA
1 AAAACAGTCATTTTA
60052072 TCGATTAAGG
Statistics
Matches: 166, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 160 0.96
28 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (27 bp):
AAAACAGTCATTTTACCTCATAAGGGC
Found at i:60053285 original size:40 final size:40
Alignment explanation
Indices: 60053230--60053310 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
60053220 AATGATTGGG
* * *
60053230 AAGGAAAGGGTAGAGAAAGGAAGAGAGGATTTTTGGTCAT
1 AAGGAAAGGGCAGAGAAAGGAAGAGAGGATATTCGGTCAT
*
60053270 AAGGAAATGGCAGAGAAAGGAAGAGAGGATATTCGGTCAT
1 AAGGAAAGGGCAGAGAAAGGAAGAGAGGATATTCGGTCAT
60053310 A
1 A
60053311 CAACAAAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.42, C:0.05, G:0.36, T:0.17
Consensus pattern (40 bp):
AAGGAAAGGGCAGAGAAAGGAAGAGAGGATATTCGGTCAT
Found at i:60074748 original size:40 final size:40
Alignment explanation
Indices: 60074704--60075651 Score: 1720
Period size: 40 Copynumber: 23.7 Consensus size: 40
60074694 GCTACTTGCT
*
60074704 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60074744 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60074784 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60074824 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60074864 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60074904 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60074944 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60074984 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60075024 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60075064 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60075104 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60075144 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60075184 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60075224 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60075264 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60075304 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60075344 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60075384 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60075424 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60075464 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
60075504 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
60075544 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
60075584 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
60075623 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
60075652 CATCCGAATA
Statistics
Matches: 875, Mismatches: 30, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
38 1 0.00
39 32 0.04
40 841 0.96
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:60081258 original size:40 final size:40
Alignment explanation
Indices: 60081196--60081413 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
60081186 AAGCCAAGTA
* * *
60081196 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
*
60081235 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
60081275 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * *
60081315 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
60081355 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAACGCA--AATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACGAATG
60081395 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60081414 TTATCATCCA
Statistics
Matches: 161, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 13 0.08
40 144 0.89
42 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:60083843 original size:46 final size:46
Alignment explanation
Indices: 60083786--60084004 Score: 150
Period size: 46 Copynumber: 4.7 Consensus size: 46
60083776 GGACTATTGT
* *
60083786 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-T-ATTACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-GACAGTGA-GACGA
* * *
60083832 GAGTTAGTGTAAGACCATGTC-GGAACATGGCATCGACAGTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACAGTGAGACGA
* * *
60083879 GAGCTAGTATAAGACATGTCTGGGACATGCATC-AGC-CTCGAGA-TA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGA-CAGT-GAGACGA
* * * * **
60083924 TAAGCCAGTGTAAGACATGACTGGGACATGCATCGGCTA-TGAG-TTA
1 -GAGCTAGTGTAAGACATGTCTGGGACATGCATCGAC-AGTGAGACGA
*
60083970 -AGCTAGTGTAAGACCATGTCCGGGACATAGCATCG
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
60084005 GCATCCTATC
Statistics
Matches: 141, Mismatches: 18, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 79 0.56
47 34 0.24
48 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACAGTGAGACGA
Found at i:60083953 original size:93 final size:91
Alignment explanation
Indices: 60083786--60084003 Score: 214
Period size: 93 Copynumber: 2.4 Consensus size: 91
60083776 GGACTATTGT
* * **
60083786 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTACGAGAGTTAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAATACGAGAGCCAGTGTAAGACCATG
*
60083851 TCGGAACATGGCATCGAC-AGTGAGATGA
66 ACGGAACAT-GCATCGACTA-TGAG-TGA
* *
60083879 GAGCTAGTATAAGACATGTCTGGGACATGCATCAGCC-TCGAGATA-TA-AGCCAGTGTAAGA-C
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--A-ATACGAGAGCCAGTGTAAGACC
* * *
60083940 ATGACTGGGACATGCATCGGCTATGAGTTA
63 ATGAC-GGAACATGCATCGACTATGAGTGA
*
60083970 -AGCTAGTGTAAGACCATGTCCGGGACATAGCATC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
60084004 GGCATCCTAT
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
90 12 0.11
91 15 0.14
92 22 0.21
93 53 0.50
94 2 0.02
95 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (91 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAATACGAGAGCCAGTGTAAGACCATG
ACGGAACATGCATCGACTATGAGTGA
Found at i:60085069 original size:21 final size:22
Alignment explanation
Indices: 60085030--60085070 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
60085020 TTGAATTGGT
*
60085030 CACACGGGCGTATTGCCCCTCC
1 CACACGGGCGTAGTGCCCCTCC
60085052 CACACGGGCGT-GTGCCCCT
1 CACACGGGCGTAGTGCCCCT
60085071 GTGTTTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCGTAGTGCCCCTCC
Found at i:60106952 original size:29 final size:29
Alignment explanation
Indices: 60106892--60106965 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
60106882 TAATCAACCG
* *
60106892 CGCACACTTAGTGTCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
**
60106921 CGCACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
*
60106950 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
60106966 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 36 0.92
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:60114366 original size:23 final size:23
Alignment explanation
Indices: 60114323--60114435 Score: 117
Period size: 23 Copynumber: 4.9 Consensus size: 23
60114313 AAGCTCCTCC
60114323 TGAGCTGATAACAGTAAGCTCTAA
1 TGAGCTGA-AACAGTAAGCTCTAA
*
60114347 TGAGCTGAAACGGTAAGCTCT-A
1 TGAGCTGAAACAGTAAGCTCTAA
**
60114369 TCGAGCTG-ATTAGTAAGCTC-ATA
1 T-GAGCTGAAACAGTAAGCTCTA-A
60114392 TGAGCTGAAACAGTAAGCT-TCAA
1 TGAGCTGAAACAGTAAGCTCT-AA
* *
60114415 TAAGCTAAAACAGTAAGCTCT
1 TGAGCTGAAACAGTAAGCTCT
60114436 TATTGTAACA
Statistics
Matches: 74, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
22 17 0.23
23 47 0.64
24 10 0.14
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAA
Found at i:60114431 original size:68 final size:70
Alignment explanation
Indices: 60114305--60114435 Score: 178
Period size: 68 Copynumber: 1.9 Consensus size: 70
60114295 TTTCGAGCCA
* * * * * *
60114305 TGATTGGTAAGCTCCTCCTGAGCTGATAACAGTAAGCTCTAATGAGCTGAAACGGTAAGCTCTAT
1 TGATTAGTAAGCTCATCATGAGCTGATAACAGTAAGCTCTAATAAGCTAAAACAGTAAGCTCTAT
60114370 CGAGC
66 CGAGC
60114375 TGATTAGTAAGCTCAT-ATGAGCTGA-AACAGTAAGCT-TCAATAAGCTAAAACAGTAAGCTCT
1 TGATTAGTAAGCTCATCATGAGCTGATAACAGTAAGCTCT-AATAAGCTAAAACAGTAAGCTCT
60114436 TATTGTAACA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
67 1 0.02
68 31 0.57
69 8 0.15
70 14 0.26
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (70 bp):
TGATTAGTAAGCTCATCATGAGCTGATAACAGTAAGCTCTAATAAGCTAAAACAGTAAGCTCTAT
CGAGC
Found at i:60115100 original size:37 final size:37
Alignment explanation
Indices: 60115039--60115998 Score: 1861
Period size: 37 Copynumber: 26.0 Consensus size: 37
60115029 TACGTATGAT
* *
60115039 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
60115074 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115111 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115148 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115185 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115222 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115259 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115296 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115333 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115370 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115407 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115444 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115481 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115518 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115555 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115592 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115629 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115666 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115703 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115740 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115777 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115814 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115851 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115888 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115925 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
60115962 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
60115999 TAAAGCTATC
Statistics
Matches: 917, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
35 9 0.01
36 3 0.00
37 905 0.99
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.40
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:60116041 original size:52 final size:52
Alignment explanation
Indices: 60115962--60116276 Score: 375
Period size: 52 Copynumber: 6.2 Consensus size: 52
60115952 TAAGTGTAGC
* * *
60115962 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
*
60116015 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
60116067 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * * *
60116113 CACTTTCCACTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
60116165 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
60116211 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
60116263 CACTTTGTCACTTG
1 CACTTT-TCACTTG
60116277 ATCAGAAGTA
Statistics
Matches: 222, Mismatches: 27, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
46 82 0.37
49 1 0.00
52 123 0.55
53 16 0.07
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
Found at i:60116084 original size:46 final size:46
Alignment explanation
Indices: 60116012--60116282 Score: 319
Period size: 46 Copynumber: 5.7 Consensus size: 46
60116002 AGCTATCACT
*
60116012 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
60116057 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* * **
60116103 TATTACTTATCACTTTCCACTTTTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* *
60116155 TACCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* **
60116201 TATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
60116253 TACCACTTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCACTTTGTCACTTGATCAGA
60116283 AGTACTCAAA
Statistics
Matches: 193, Mismatches: 20, Indels: 25
0.81 0.08 0.11
Matches are distributed among these distances:
45 12 0.06
46 98 0.51
48 2 0.01
50 2 0.01
52 79 0.41
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:60116103 original size:98 final size:98
Alignment explanation
Indices: 60115961--60116282 Score: 545
Period size: 98 Copynumber: 3.3 Consensus size: 98
60115951 ATAAGTGTAG
* * * ** * *
60115961 CCACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
**
60116026 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
*
60116059 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
*
60116124 TTTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
60116157 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
60116222 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
60116255 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
60116283 AGTACTCAAA
Statistics
Matches: 211, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 211 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
Found at i:60125979 original size:23 final size:23
Alignment explanation
Indices: 60125949--60125994 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
60125939 TCATAAGTAC
60125949 ATGTTAGAGTGGGAATTTGATGT
1 ATGTTAGAGTGGGAATTTGATGT
60125972 ATGTTAGAGTGGGAATTTGATGT
1 ATGTTAGAGTGGGAATTTGATGT
60125995 TTTCGTAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.39
Consensus pattern (23 bp):
ATGTTAGAGTGGGAATTTGATGT
Found at i:60126646 original size:53 final size:53
Alignment explanation
Indices: 60126462--60126668 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 53
60126452 ATTAGGGTTT
* ** * *
60126462 AAGGATACCA-AGTAAGACCATGCCAAGGGATGG-AATTGGTAAGTTTTATAAGGT
1 AAGGATACCATA-TAAGACCATGTCAAGACATGGCAA-TGGTAAG-TTCATAAGGC
* * * * * * * *
60126516 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGAC
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGT-AAGT-TCATAAGGC
* * * * *
60126571 AAAGATCCCATGTAAGACCATGTCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
*
60126624 AAGGATACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTT
60126669 TAAAAATGAA
Statistics
Matches: 120, Mismatches: 29, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
53 46 0.38
54 32 0.27
55 42 0.35
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:60128490 original size:48 final size:48
Alignment explanation
Indices: 60128290--60128566 Score: 262
Period size: 48 Copynumber: 5.8 Consensus size: 48
60128280 CATAATAGGG
* * * * * *
60128290 TGCCAATGCCATATCCCGGATATGGTCTTATATGGGACCACTTATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
* *
60128338 TGACAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAT--A
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
* * *
60128384 TTG--AA-GCCGATAG-CCCAG-CTATGGTCTTACATGATGTTCTCATATCGA
1 -TGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATATCGA
* *
60128432 TGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCACATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
* * *
60128480 TGCTAATGCCATGTCCCAAACATCGTCTTACATGGGATCACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
* * * * * *
60128528 TGCCGATGTCATATCCCAGATATGGTCTTATAAGGGATC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
60128567 TCATTGACCC
Statistics
Matches: 187, Mismatches: 30, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
44 4 0.02
45 22 0.12
46 9 0.05
47 4 0.02
48 123 0.66
49 21 0.11
50 4 0.02
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
Found at i:60131324 original size:46 final size:46
Alignment explanation
Indices: 60131272--60131584 Score: 430
Period size: 46 Copynumber: 6.8 Consensus size: 46
60131262 GTGTGCTCCT
*
60131272 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACC
* *
60131318 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACC
* * *
60131364 TGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACC
* *
60131410 TGGTATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACC
* *
60131456 TGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACC
*** * *
60131502 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACC
* * * *
60131549 TGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
60131585 TATGACATCA
Statistics
Matches: 245, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 203 0.83
47 42 0.17
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACC
Found at i:60134507 original size:14 final size:14
Alignment explanation
Indices: 60134490--60134519 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
60134480 ATCATGATAG
60134490 TATGCATGTTTTTC
1 TATGCATGTTTTTC
60134504 TATGCATGTTTTTC
1 TATGCATGTTTTTC
60134518 TA
1 TA
60134520 AGTAAAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (14 bp):
TATGCATGTTTTTC
Found at i:60140692 original size:27 final size:27
Alignment explanation
Indices: 60140661--60140838 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60140651 TAAATTGTAC
60140661 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60140688 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60140714 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60140742 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60140770 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60140797 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60140824 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60140839 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60140775 original size:82 final size:81
Alignment explanation
Indices: 60140662--60140817 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60140652 AAATTGTACA
* *
60140662 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60140726 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60140743 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60140808 TGCGAGTTGA
65 TGCGAATTGA
60140818 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60140829 original size:82 final size:81
Alignment explanation
Indices: 60140658--60140838 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60140648 GATTAAATTG
* *
60140658 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60140723 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60140739 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60140803 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60140821 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60140839 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60140849 original size:27 final size:27
Alignment explanation
Indices: 60140743--60140849 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
60140733 TGACCATGCG
* * * *
60140743 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
60140771 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
60140798 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
60140825 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
60140850 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:60148770 original size:27 final size:27
Alignment explanation
Indices: 60148739--60148916 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
60148729 TAAATTGTAC
60148739 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60148766 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60148792 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60148820 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
60148848 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60148875 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60148902 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60148917 GACTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60148853 original size:82 final size:81
Alignment explanation
Indices: 60148740--60148895 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
60148730 AAATTGTACA
*
60148740 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
60148804 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60148821 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
60148886 TGCGAGTTGA
65 TGCGAATTGA
60148896 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60148907 original size:82 final size:81
Alignment explanation
Indices: 60148736--60148916 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
60148726 GATTAAATTG
*
60148736 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
60148801 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60148817 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
60148881 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60148899 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60148917 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60155452 original size:47 final size:47
Alignment explanation
Indices: 60155398--60155591 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
60155388 TTAGGACTTT
** * *
60155398 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60155445 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
60155492 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
60155539 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60155586 ATGTGA
1 ATGTGA
60155592 AATATGTATG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60155498 original size:22 final size:22
Alignment explanation
Indices: 60155427--60155498 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
60155417 GTATATATGA
60155427 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
60155449 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
60155474 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
60155496 GAT
1 GAT
60155499 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:60155719 original size:98 final size:96
Alignment explanation
Indices: 60155562--60155745 Score: 307
Period size: 98 Copynumber: 1.9 Consensus size: 96
60155552 GAACATGCAT
*
60155562 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
60155627 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
60155658 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
60155722 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
60155746 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 53 0.65
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:60155761 original size:50 final size:48
Alignment explanation
Indices: 60155561--60155745 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
60155551 TGAACATGCA
60155561 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
60155609 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
60155657 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
60155707 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
60155746 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 80 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:60155999 original size:37 final size:37
Alignment explanation
Indices: 60155891--60155999 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
60155881 GGAAATATAT
*
60155891 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
*
60155928 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
* *
60155965 TCCGGGTAAGACCTGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTT
60156000 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
Found at i:60159876 original size:19 final size:18
Alignment explanation
Indices: 60159852--60159888 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
60159842 AGAATTGGCC
60159852 AAATGGGCCGTAATGGGCT
1 AAATGGGCC-TAATGGGCT
*
60159871 AAATGGGCCTGATGGGCT
1 AAATGGGCCTAATGGGCT
60159889 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.22
Consensus pattern (18 bp):
AAATGGGCCTAATGGGCT
Found at i:60166148 original size:16 final size:16
Alignment explanation
Indices: 60166127--60166158 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60166117 GTTGTAACGC
60166127 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
60166143 CCCAAAAATCCTGAAA
1 CCCAAAAATCCCGAAA
60166159 TTTTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:60175580 original size:29 final size:28
Alignment explanation
Indices: 60175532--60175586 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
60175522 ATCCGAAGTA
*
60175532 CTGATATCATGGTCCAAAGCCAAATCAG
1 CTGATATCATGGCCCAAAGCCAAATCAG
*
60175560 CTGATATTCATGGCCCGAAGCCAAATC
1 CTGATA-TCATGGCCCAAAGCCAAATC
60175587 GGTATAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (28 bp):
CTGATATCATGGCCCAAAGCCAAATCAG
Found at i:60178686 original size:25 final size:25
Alignment explanation
Indices: 60178658--60178710 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
60178648 AAGGCATAAG
*
60178658 CTATTCAATGAAATGTTAGTGTAAA
1 CTATTCAATCAAATGTTAGTGTAAA
60178683 CTATTCAATCAAATGTTAGTGTAAA
1 CTATTCAATCAAATGTTAGTGTAAA
60178708 CTA
1 CTA
60178711 CGAATTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (25 bp):
CTATTCAATCAAATGTTAGTGTAAA
Found at i:60195147 original size:29 final size:29
Alignment explanation
Indices: 60195112--60195185 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
60195102 GTTGTGAGAT
* *
60195112 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
60195141 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
60195170 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60195186 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:60195555 original size:40 final size:40
Alignment explanation
Indices: 60195511--60195636 Score: 157
Period size: 40 Copynumber: 3.1 Consensus size: 40
60195501 GCTAAGTCCC
60195511 GAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCT
1 GAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCT
* * * * * * *
60195551 GAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCC
1 GAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CT
60195591 GAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCT
1 GAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCT
60195631 GAAGGC
1 GAAGGC
60195637 ATTGGTGCGA
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
39 7 0.10
40 54 0.79
41 7 0.10
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
GAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCT
Found at i:60195629 original size:80 final size:80
Alignment explanation
Indices: 60195496--60195674 Score: 358
Period size: 80 Copynumber: 2.2 Consensus size: 80
60195486 TCGAATGATG
60195496 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATTG
60195561 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
60195576 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATTG
60195641 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
60195656 TCCGGGCTAAGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
60195675 AGCATTCATG
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 99 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATTG
GTGCGAGTTACTAAA
Found at i:60195659 original size:40 final size:40
Alignment explanation
Indices: 60195535--60195666 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
60195525 AAGTGACCAT
60195535 ATCCGGACTAAGATCTGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGACTAAGATCTGAAGGCATTGGTGCGAGTTACTAA
* * * * * * *
60195575 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCAT
1 ATCCGGACTAAGAT-CTGAAGGCATTGGTGC-GAGTTACTAA
60195615 ATCCGGACTAAGATCTGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGACTAAGATCTGAAGGCATTGGTGCGAGTTACTAA
*
60195655 ATCCGGGCTAAG
1 ATCCGGACTAAG
60195667 TCCCGAAGAG
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
39 7 0.10
40 59 0.81
41 7 0.10
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGACTAAGATCTGAAGGCATTGGTGCGAGTTACTAA
Found at i:60195699 original size:40 final size:40
Alignment explanation
Indices: 60195655--60195811 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
60195645 GAGTTACTAA
*
60195655 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
60195695 ATCCGGGCTAAGTCCCGAAAAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
60195735 ATCTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
60195775 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
60195812 CGTGTATTCG
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:60195706 original size:80 final size:80
Alignment explanation
Indices: 60195496--60195779 Score: 310
Period size: 80 Copynumber: 3.5 Consensus size: 80
60195486 TCGAATGATG
* *
60195496 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGACTAAGATCTGAAGGCAT
60195559 TGGTGCGAGTTACTAAA
64 TGGTGCGAGTTACTAAA
* *
60195576 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGACTAAGATCTGAAGGCAT
60195639 TGGTGCGAGTTACTAAA
64 TGGTGCGAGTTACTAAA
* * * * * *
60195656 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAG-TCCCGAAAAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGAT-CTG-AAGGCAT
** * * **
60195720 TCATGCTAGTGA-TGTA
64 TGGTGCGAGTTACTAAA
* *
60195736 TCTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
60195780 TGCTAAATCC
Statistics
Matches: 181, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
79 1 0.01
80 154 0.85
81 20 0.11
82 6 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGATCTGAAGGCATTG
GTGCGAGTTACTAAA
Found at i:60198025 original size:43 final size:43
Alignment explanation
Indices: 60197977--60198079 Score: 190
Period size: 43 Copynumber: 2.4 Consensus size: 43
60197967 TTGGTTTTCA
60197977 GCACTAAGTGTGCGGGCAATAAGTGTT-GACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCG-CGGTTGTGAGATTG
60198020 GCACTAAGTGTGCGGGCAATAAGTGTTCGCGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCGCGGTTGTGAGATTG
60198063 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
60198080 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
43 58 0.98
44 1 0.02
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCGCGGTTGTGAGATTG
Found at i:60198096 original size:29 final size:29
Alignment explanation
Indices: 60198061--60198134 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
60198051 GTTGTGAGAT
* *
60198061 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
60198090 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
60198119 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60198135 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:60198568 original size:40 final size:40
Alignment explanation
Indices: 60198524--60198720 Score: 277
Period size: 40 Copynumber: 4.9 Consensus size: 40
60198514 GAGTTACTAA
*
60198524 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
60198564 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
60198604 ATTCGGGCTAAGTCCCGAAAAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
60198644 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
** * * *
60198684 ATCCGTACTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
60198721 CGTGTATTCG
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:60201267 original size:27 final size:27
Alignment explanation
Indices: 60201208--60201359 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
60201198 TAAATTGTAC
*
60201208 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
60201236 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60201263 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
60201290 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
60201318 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60201345 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60201360 GACTTAATAT
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
27 71 0.62
28 43 0.38
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:60201274 original size:55 final size:55
Alignment explanation
Indices: 60201208--60201359 Score: 234
Period size: 55 Copynumber: 2.8 Consensus size: 55
60201198 TAAATTGTAC
60201208 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* * * *
60201263 TGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* *
60201318 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
60201360 GACTTAATAT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 24 0.27
55 64 0.73
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
Found at i:60201322 original size:82 final size:82
Alignment explanation
Indices: 60201208--60201359 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
60201198 TAAATTGTAC
* *
60201208 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
60201273 GTGCGAATTGACTATGT
66 GTGCGAATTGACTATGT
* * * *
60201290 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
60201355 GTGCG
66 GTGCG
60201360 GACTTAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
GTGCGAATTGACTATGT
Found at i:60207578 original size:102 final size:102
Alignment explanation
Indices: 60207402--60207610 Score: 337
Period size: 102 Copynumber: 2.0 Consensus size: 102
60207392 GCACAAGGGG
*
60207402 TGTGTGTAGCTTGGTCAACTATAACCAAGTTCATTCTACCACAATTTTATGACAAGAAAGGAGGT
1 TGTGTGTAGCTTGGTCAACTATAACCAAGTTCATTCTACCACAATCTTATGACAAGAAAGGAGGT
* *
60207467 TTTGGCAAGAGAGTGAAATAATGATTGAAAAAAAGGA
66 TTTGGCAAGAGAGTGAAATAAGGAGTGAAAAAAAGGA
* * * *
60207504 TGTGTGTAGCTTGGTCAACTTTAACCAGGTTCATTGTATCACAATCTTATGACAAGAAAGGAGGT
1 TGTGTGTAGCTTGGTCAACTATAACCAAGTTCATTCTACCACAATCTTATGACAAGAAAGGAGGT
**
60207569 TTTGGCAAGAGAGTGAAATAAGGAGTGAAAAAGGGGA
66 TTTGGCAAGAGAGTGAAATAAGGAGTGAAAAAAAGGA
60207606 TGTGT
1 TGTGT
60207611 CTCACAACAT
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (102 bp):
TGTGTGTAGCTTGGTCAACTATAACCAAGTTCATTCTACCACAATCTTATGACAAGAAAGGAGGT
TTTGGCAAGAGAGTGAAATAAGGAGTGAAAAAAAGGA
Found at i:60207719 original size:32 final size:32
Alignment explanation
Indices: 60207678--60207744 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
60207668 GCAACAAGGG
60207678 TTATGGAGCATTACCATACAGTCAGAAAACAC
1 TTATGGAGCATTACCATACAGTCAGAAAACAC
60207710 TTATGGAGCATTACCATACAGTCAGAAAACAC
1 TTATGGAGCATTACCATACAGTCAGAAAACAC
60207742 TTA
1 TTA
60207745 ACATCATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (32 bp):
TTATGGAGCATTACCATACAGTCAGAAAACAC
Found at i:60208762 original size:42 final size:42
Alignment explanation
Indices: 60208653--60208740 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
60208643 CTCATGATGT
*
60208653 CACACGGCCAATGCACACGCCCATGTGCTAGGCCGTGCCCTC
1 CACACGGCCAATGCACACGCCCGTGTGCTAGGCCGTGCCCTC
60208695 CACACGGCCAATGCACACGCCCGTGTGCTAGGCCGTGCCCTC
1 CACACGGCCAATGCACACGCCCGTGTGCTAGGCCGTGCCCTC
60208737 CACA
1 CACA
60208741 TGGCTGAGAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.19, C:0.43, G:0.24, T:0.14
Consensus pattern (42 bp):
CACACGGCCAATGCACACGCCCGTGTGCTAGGCCGTGCCCTC
Found at i:60209655 original size:47 final size:47
Alignment explanation
Indices: 60209586--60209846 Score: 234
Period size: 47 Copynumber: 5.6 Consensus size: 47
60209576 GTAAGGTACT
* *
60209586 GATGCCATGTCCCAGACATGGTCTTACCCTGGCTCATATCTC-AAGTC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAGCC
* * *
60209633 GATGCTATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTACCC
1 GATGC-ATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCGAAGCC
* * ** *
60209681 GATGCATGTCCCAGACAT-ATCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAGCC
* * * *
60209727 GATGCATGTCCCAGACAT-GTTTTACACTAGCTCTTGTCTC-AATGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA-GCC
* * *
60209773 GATGCCATGTCCCAGACATGGTCTTATACAGGCTCTCATAATGT-G--GCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGG--CTCAT-ATCTCGAAGCC
60209821 GATGCATGTCCCAGACAT-GTCTTACA
1 GATGCATGTCCCAGACATGGTCTTACA
60209847 GTAGCCCACA
Statistics
Matches: 176, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
45 1 0.01
46 70 0.40
47 77 0.44
48 22 0.12
50 4 0.02
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAGCC
Found at i:60209844 original size:140 final size:141
Alignment explanation
Indices: 60209586--60209846 Score: 348
Period size: 140 Copynumber: 1.9 Consensus size: 141
60209576 GTAAGGTACT
* * * *
60209586 GATGCCATGTCCCAGACATGGTCTTACCCTGGCTCATATCTCAAGTCGATGCTATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGACA
* *
60209651 TGGTCTTACACTGACTATCATCTCGTACCCGATGCATGTCCCAGACATATCTTACACTGGCTTAC
66 TGGTCTTACACAGACTATCATATCGTACCCGATGCATGTCCCAGACATATCTTACACTGGCTTAC
60209716 GTCTCGAGGCC
131 GTCTCGAGGCC
* * *
60209727 GATG-CATGTCCCAGACAT-GTTTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA-GCCGATGCCATGTCCCAGAC
* * * ** *
60209790 ATGGTCTTATACAGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACA
65 ATGGTCTTACACAGACTATCAT-ATCGTACCCGATGCATGTCCCAGACATATCTTACA
60209847 GTAGCCCACA
Statistics
Matches: 103, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
139 19 0.18
140 79 0.77
141 5 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGACA
TGGTCTTACACAGACTATCATATCGTACCCGATGCATGTCCCAGACATATCTTACACTGGCTTAC
GTCTCGAGGCC
Found at i:60211825 original size:38 final size:38
Alignment explanation
Indices: 60211758--60211838 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
60211748 CACCGGTATC
* * * * *
60211758 AAGCCTACTAGGCTTTAAGCTTGAGTAACA-CTGGCACT
1 AAGCCTACTAGACATTAAGCCTAAATAACATC-GGCACT
*
60211796 AAGCCTACTAGACATTAAGCCTAAATAACATCGGCATT
1 AAGCCTACTAGACATTAAGCCTAAATAACATCGGCACT
60211834 AAGCC
1 AAGCC
60211839 AGCTAGGCAC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
38 35 0.97
39 1 0.03
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (38 bp):
AAGCCTACTAGACATTAAGCCTAAATAACATCGGCACT
Found at i:60211899 original size:41 final size:41
Alignment explanation
Indices: 60211833--60211941 Score: 148
Period size: 41 Copynumber: 2.7 Consensus size: 41
60211823 ACATCGGCAT
* *
60211833 TAAGCC-AGCTAGGCACACAGTCTGAATCAATACACCGACAC
1 TAAGCCTA-CTAGGCACAAAGCCTGAATCAATACACCGACAC
* **
60211874 TAAGCCTGCTAGGCATGAAGCCTGAATCAATACACCGACAC
1 TAAGCCTACTAGGCACAAAGCCTGAATCAATACACCGACAC
*
60211915 TAAGCCTACTATGCACAAAGCCTGAAT
1 TAAGCCTACTAGGCACAAAGCCTGAAT
60211942 AACACCCCAT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.17
Consensus pattern (41 bp):
TAAGCCTACTAGGCACAAAGCCTGAATCAATACACCGACAC
Found at i:60217287 original size:92 final size:94
Alignment explanation
Indices: 60217170--60217340 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 94
60217160 TATTTGTGTC
* * *
60217170 GATGCCATGTCCCAAACATGGTCTTACA-TTG-ACACAT-CTCGTAGCCGATGCATGTCCCAAAC
1 GATGCCATGTCCCAAACATGATCTTACACTAGCACACATAAT-GTAGCCGATGCATGTCCCAAAC
*
60217232 ATGTCTTATACTAGCACTCGTCTCAATACT
65 ATGTCTTACACTAGCACTCGTCTCAATACT
* * * * *
60217262 GATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAAACATGATCTTACACTAGCACACATAATGTAGCCGATGCATGTCCCAAACA
60217327 TGTCTTACACTAGC
66 TGTCTTACACTAGC
60217341 TCACACAAGT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 26 0.39
93 2 0.03
94 38 0.57
95 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (94 bp):
GATGCCATGTCCCAAACATGATCTTACACTAGCACACATAATGTAGCCGATGCATGTCCCAAACA
TGTCTTACACTAGCACTCGTCTCAATACT
Found at i:60226913 original size:21 final size:19
Alignment explanation
Indices: 60226888--60226938 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 19
60226878 AATAAATCAG
*
60226888 AAAAATATATGGAAAGTTATA
1 AAAAATATATAGAAA-TT-TA
* *
60226909 TAAAATTTATAGAAATTTA
1 AAAAATATATAGAAATTTA
60226928 AAAAATATATA
1 AAAAATATATA
60226939 TTTTTGTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 11 0.44
20 2 0.08
21 12 0.48
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (19 bp):
AAAAATATATAGAAATTTA
Found at i:60230375 original size:90 final size:90
Alignment explanation
Indices: 60230179--60230383 Score: 214
Period size: 90 Copynumber: 2.3 Consensus size: 90
60230169 GAGAACTGCT
* * * * *
60230179 AGAATATAGGTGGACGAAACACCACTGTTGCAGGTTAATACACTACCAGATGGTTGATAATGCAC
1 AGAAAATAGGTGGATGAACCACCAGTGTCGCAGGTTAATACACTACCAGATGGTTGATAATGCAC
* *
60230244 AGCCTAATTGCAGATAAAAGCTACC
66 AACATAATTGCAGATAAAAGCTACC
* * * * *
60230269 AGAAAATAGGTAGATGAACCACCAGTGTCGCAGGTTAATATACTGCTAGATGGTTG-TGAATGTA
1 AGAAAATAGGTGGATGAACCACCAGTGTCGCAGGTTAATACACTACCAGATGGTTGAT-AATGCA
* * * *
60230333 CAACATAGTTGTAGATAAAAGCTGCT
65 CAACATAATTGCAGATAAAAGCTACC
* ** *
60230359 AGATAATCTGTGGATGAACAACCAG
1 AGAAAATAGGTGGATGAACCACCAG
60230384 AGTTTTGTAG
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 1 0.01
90 92 0.99
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.24
Consensus pattern (90 bp):
AGAAAATAGGTGGATGAACCACCAGTGTCGCAGGTTAATACACTACCAGATGGTTGATAATGCAC
AACATAATTGCAGATAAAAGCTACC
Found at i:60233785 original size:40 final size:40
Alignment explanation
Indices: 60233711--60233852 Score: 234
Period size: 40 Copynumber: 3.6 Consensus size: 40
60233701 AACCCAAGTA
* *
60233711 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
60233750 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
60233790 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
60233830 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
60233853 CATTCGAACA
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 12 0.12
40 84 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:60240256 original size:44 final size:44
Alignment explanation
Indices: 60240193--60240280 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
60240183 CCTTTGTAAA
60240193 GCTTAGAGATTTTTTTACTCATACCATCATAAAGAAAAGTCTAT
1 GCTTAGAGATTTTTTTACTCATACCATCATAAAGAAAAGTCTAT
60240237 GCTTAGAGATTTTTTTACTCATACCATCATAAAGAAAAGTCTAT
1 GCTTAGAGATTTTTTTACTCATACCATCATAAAGAAAAGTCTAT
60240281 CTCTCATCTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (44 bp):
GCTTAGAGATTTTTTTACTCATACCATCATAAAGAAAAGTCTAT
Found at i:60242005 original size:43 final size:45
Alignment explanation
Indices: 60241941--60242038 Score: 139
Period size: 43 Copynumber: 2.2 Consensus size: 45
60241931 GGGGCTGTTA
* *
60241941 GGATATTATTATTGTATATTATCGT-TTAGTAGTTTGATTCCTAATG
1 GGATATTA-TATTGTATATTATC-TCTTAGCAATTTGATTCCTAATG
60241987 GGATATTATA-TG-ATATTATCTCTTAGCAATTTGATTCCTAATG
1 GGATATTATATTGTATATTATCTCTTAGCAATTTGATTCCTAATG
60242030 GGATATTAT
1 GGATATTAT
60242039 CTTTTAGGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
42 1 0.02
43 36 0.73
44 2 0.04
45 2 0.04
46 8 0.16
ACGTcount: A:0.29, C:0.08, G:0.16, T:0.47
Consensus pattern (45 bp):
GGATATTATATTGTATATTATCTCTTAGCAATTTGATTCCTAATG
Found at i:60243629 original size:29 final size:31
Alignment explanation
Indices: 60243574--60243633 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 31
60243564 GAACTTGAAT
60243574 TTTAAAATCTAAAAAGTATAAGAACTAAATTC
1 TTTAAAA-CTAAAAAGTATAAGAACTAAATTC
60243606 TTTAAAA-TAAAAA-TA-AAGAGACTAAATT
1 TTTAAAACTAAAAAGTATAAGA-ACTAAATT
60243634 TAAATTGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 4 0.15
29 10 0.37
30 6 0.22
32 7 0.26
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (31 bp):
TTTAAAACTAAAAAGTATAAGAACTAAATTC
Found at i:60252385 original size:18 final size:18
Alignment explanation
Indices: 60252348--60252395 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
60252338 TTTAGTAAAT
*
60252348 ATTTTTATAAATTTTAATA
1 ATTTTTA-AAACTTTAATA
60252367 ATGTTTTAAAACTTT-ATA
1 AT-TTTTAAAACTTTAATA
60252385 ATTCTTTAAAA
1 ATT-TTTAAAA
60252396 AAATAATTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 1 0.04
18 12 0.46
19 8 0.31
20 5 0.19
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (18 bp):
ATTTTTAAAACTTTAATA
Found at i:60253632 original size:6 final size:6
Alignment explanation
Indices: 60253623--60253670 Score: 87
Period size: 6 Copynumber: 8.0 Consensus size: 6
60253613 AATGTTATGA
*
60253623 AGAAGA AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC
1 AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC
60253671 GATATTTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.52, C:0.15, G:0.33, T:0.00
Consensus pattern (6 bp):
AGAAGC
Found at i:60254356 original size:26 final size:27
Alignment explanation
Indices: 60254311--60254377 Score: 118
Period size: 26 Copynumber: 2.5 Consensus size: 27
60254301 CTAAATGTTA
*
60254311 ATTTATCCCCAAAACAAATATTAGTTG
1 ATTTATCCCAAAAACAAATATTAGTTG
60254338 ATTTATCCCAAAAAC-AATATTAGTTG
1 ATTTATCCCAAAAACAAATATTAGTTG
60254364 ATTTATCCCAAAAA
1 ATTTATCCCAAAAA
60254378 AACAATACTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 25 0.64
27 14 0.36
ACGTcount: A:0.43, C:0.18, G:0.06, T:0.33
Consensus pattern (27 bp):
ATTTATCCCAAAAACAAATATTAGTTG
Done.