Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 184 of 276
Found at i:60585132 original size:15 final size:15
Alignment explanation
Indices: 60585099--60585132 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
60585089 CTTTTGCCTT
* *
60585099 CTCTTCTCTTCTCTT
1 CTCTTCTCTTCTATA
60585114 CTCTTCTCTTCTATA
1 CTCTTCTCTTCTATA
60585129 CTCT
1 CTCT
60585133 ATTTTCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.38, G:0.00, T:0.56
Consensus pattern (15 bp):
CTCTTCTCTTCTATA
Found at i:60602676 original size:18 final size:18
Alignment explanation
Indices: 60602648--60602689 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
60602638 AAATGTAAAA
60602648 AAATATATTCG-GTTTATTC
1 AAAT-TATTCGAG-TTATTC
*
60602667 GAATTATTCGAGTTATTC
1 AAATTATTCGAGTTATTC
60602685 AAATT
1 AAATT
60602690 TGAAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (18 bp):
AAATTATTCGAGTTATTC
Found at i:60605785 original size:27 final size:27
Alignment explanation
Indices: 60605746--60605798 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
60605736 TGCAGGAGCA
* *
60605746 GATTGAACTTCAGCAATAGGCGTAGTG
1 GATTGAACATCAGCAAAAGGCGTAGTG
*
60605773 GATTGAACATCAGCAAAAGGTGTAGT
1 GATTGAACATCAGCAAAAGGCGTAGT
60605799 AGACGATGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (27 bp):
GATTGAACATCAGCAAAAGGCGTAGTG
Found at i:60607446 original size:15 final size:15
Alignment explanation
Indices: 60607403--60607449 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
60607393 ATTAATTAAT
60607403 TTATTACTATTTATTA
1 TTATTACTA-TTATTA
*
60607419 TTATTACTCTTATTA
1 TTATTACTATTATTA
60607434 TTATTGA-TATTATTA
1 TTATT-ACTATTATTA
60607449 T
1 T
60607450 ATTTGGTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 19 0.68
16 9 0.32
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (15 bp):
TTATTACTATTATTA
Found at i:60609663 original size:19 final size:19
Alignment explanation
Indices: 60609639--60609685 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
60609629 TTAACACCTT
*
60609639 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
60609658 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
60609677 TATGCATTA
1 TTTGCATTA
60609686 AAGTCCACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:60610636 original size:24 final size:25
Alignment explanation
Indices: 60610600--60610651 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
60610590 TTTGTAATCA
*
60610600 TTTTTGAGCTAA-TATTCTTTCATTC
1 TTTTTGAGATAATTATT-TTTCATTC
*
60610625 TTTTTGA-ATAATTATTTTTTATTC
1 TTTTTGAGATAATTATTTTTCATTC
60610649 TTT
1 TTT
60610652 CATTCTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.21, C:0.10, G:0.06, T:0.63
Consensus pattern (25 bp):
TTTTTGAGATAATTATTTTTCATTC
Found at i:60610893 original size:52 final size:52
Alignment explanation
Indices: 60610831--60610931 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
60610821 AACAAGACAT
60610831 GTGTTTAGAGGGATCTCAAGACTTTGAAGATGACATAGATTGTAGCCTACAC
1 GTGTTTAGAGGGATCTCAAGACTTTGAAGATGACATAGATTGTAGCCTACAC
* *
60610883 GTGTTTAGAGGGATCTTAGGACTTTGAAGATGACATAGATTGTAGCCTA
1 GTGTTTAGAGGGATCTCAAGACTTTGAAGATGACATAGATTGTAGCCTA
60610932 TCTCCAGACT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.31
Consensus pattern (52 bp):
GTGTTTAGAGGGATCTCAAGACTTTGAAGATGACATAGATTGTAGCCTACAC
Found at i:60612702 original size:51 final size:45
Alignment explanation
Indices: 60612581--60612667 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
60612571 AGGAGAAGGG
* * *
60612581 ACCAAGGTGAAAACCCGTAAAGGGCGCTTTGAGTCCTAAAAAGAA
1 ACCAATGTGAAAACCCGCAAAGGGCGATTTGAGTCCTAAAAAGAA
*
60612626 ACCAATGTGAAAACTCGCAAAGGGCGATTTGAGTCCTAAAAA
1 ACCAATGTGAAAACCCGCAAAGGGCGATTTGAGTCCTAAAAA
60612668 AAAGGATAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (45 bp):
ACCAATGTGAAAACCCGCAAAGGGCGATTTGAGTCCTAAAAAGAA
Found at i:60615246 original size:38 final size:42
Alignment explanation
Indices: 60615194--60615379 Score: 192
Period size: 47 Copynumber: 4.0 Consensus size: 42
60615184 ATATACACTT
60615194 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
60615238 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
60615285 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
60615334 CTTTCACATTCATCACATCGGCCATTAGGGCCTTATCACATATATA
1 ---TCACATT-ATCACATCGGCCATTA-GGCCTTATCACATATATA
60615380 CACTTTATAT
Statistics
Matches: 134, Mismatches: 2, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
47 80 0.60
48 7 0.05
49 36 0.27
50 11 0.08
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.32
Consensus pattern (42 bp):
TCACATTATCACATCGGCCATTAGGCCTTATCACATATATAA
Found at i:60615348 original size:49 final size:49
Alignment explanation
Indices: 60615127--60615645 Score: 752
Period size: 49 Copynumber: 10.6 Consensus size: 49
60615117 CCCTTCGGGA
* * *
60615127 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
60615174 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
60615221 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60615268 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60615315 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT-CGGC
60615365 CTTATCACATATATACACTTTATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----AT--A---TATATACACTTTCACATTCATCACATTGGCCATTCGGC
60615423 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60615472 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60615521 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60615570 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60615619 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
60615646 TATTCAAATA
Statistics
Matches: 444, Mismatches: 14, Indels: 28
0.91 0.03 0.06
Matches are distributed among these distances:
46 1 0.00
47 154 0.35
49 228 0.51
50 11 0.02
52 1 0.00
54 4 0.01
56 1 0.00
58 11 0.02
59 33 0.07
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:60618453 original size:24 final size:24
Alignment explanation
Indices: 60618421--60618468 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
60618411 AGTACTGTGC
*
60618421 ATTGAACCTTGAAGATTACGGTGG
1 ATTGAACCTTGAAGATTACAGTGG
60618445 ATTGAACCTTGAAGATTACAGTGG
1 ATTGAACCTTGAAGATTACAGTGG
60618469 GGGCAATCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (24 bp):
ATTGAACCTTGAAGATTACAGTGG
Found at i:60618901 original size:44 final size:44
Alignment explanation
Indices: 60618798--60619485 Score: 388
Period size: 44 Copynumber: 15.7 Consensus size: 44
60618788 AGATGGCGAA
* * * * ** *
60618798 TCTTATCTCCCTGAAGGTACAGTAGAGTAGATTAAAGCCA-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACA-AG
* * *
60618842 TCCTATCTCCCTGAAGTTACAGTGGATCAGATTAAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAG
* * * * * **
60618886 TCTTAACTCCTTGAAGTTGTAGTGGAGCAGACTGAAGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TTACAAG
* * * **
60618931 TCTTATCCCCCTAAAGTTACAGTGGA--ATGAATTGAAGAAGATGGCGAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA-G-ATT--A-AAG-TTAC-AAG
* * *
60618979 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACA-AG
* ** *
60619023 TCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAG
* * ** *
60619067 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA-CAAG
* * *
60619111 TCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAG
* * * * **
60619155 TCTTATATCCCTGAAGTTGCAGTGGAGCAAACTGAAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA-CAAG
* * ** * ** *
60619200 TCTTATCCCCCTAAAGTTGCAGTGGAATAGACTAAAGCCA-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACA-AG
* * * * * *
60619244 TCCTATCTCTCTGAAGTTACAGTGGAGCGGATTGAAG-T-GAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAG
* * * *
60619286 TGTTATCTCCCTGAAGTTGCAGT-GA-CTA-ATGATAG-T-GAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTAAAGTTACAAG
* * * * * *
60619325 TCTTATTTCCCTGAAGCTGCGGTGGAACAAATTAAAGCTATCACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA-CA-AG
* * * * *
60619371 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA-TGACAAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAG
* ** *
60619413 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTACAGCCA-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACA-AG
*
60619457 TCTGATCTCCCTGAAGTTGCAGTGGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
60619486 AACTGAAAAT
Statistics
Matches: 490, Mismatches: 122, Indels: 64
0.72 0.18 0.09
Matches are distributed among these distances:
39 19 0.04
40 12 0.02
41 37 0.08
42 24 0.05
43 11 0.02
44 256 0.52
45 71 0.14
46 2 0.00
47 24 0.05
48 30 0.06
49 3 0.01
50 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAG
Found at i:60619081 original size:88 final size:88
Alignment explanation
Indices: 60618798--60619183 Score: 434
Period size: 88 Copynumber: 4.3 Consensus size: 88
60618788 AGATGGCGAA
* * * * * *
60618798 TCTTATCTCCCTGAAGGTACAGTAGAGTAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAATAATCCTATCTCCCTGAAGTTACA
* *
60618863 GTGGATCAGATTAAAGTTACAAG
66 GTGGAGCGGATTAAAGTTACAAG
* * * * * * * * *
60618886 TCTTAACTCCTTGAAGTTGTAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTAAAGTTAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAATAA-TCCTATCTCCCTGAAGTTAC
** * **
60618951 AGTGGAATGAATTGAAGAAGATGGCGAA-
65 AGTGGAGCGGATT--A-AAG-TTAC-AAG
* * * *
60618979 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTAATAATCCTATCTCCCTGAAGTTATA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAATAATCCTATCTCCCTGAAGTTACA
60619044 GTGGAGCGGATTAAAGTTACAAG
66 GTGGAGCGGATTAAAGTTACAAG
* *
60619067 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-AAAGTAATCCTATCTCCCTGAAGTTTC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAA-TAATCCTATCTCCCTGAAGTTAC
60619131 AGTGGAGCGGATTAAAGTTACAAG
65 AGTGGAGCGGATTAAAGTTACAAG
*
60619155 TCTTATATCCCTGAAGTTGCAGTGGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
60619184 AACTGAAGAA
Statistics
Matches: 244, Mismatches: 46, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
87 4 0.02
88 141 0.58
89 29 0.12
90 1 0.00
91 1 0.00
92 29 0.12
93 37 0.15
94 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (88 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAATAATCCTATCTCCCTGAAGTTACA
GTGGAGCGGATTAAAGTTACAAG
Found at i:60619084 original size:181 final size:181
Alignment explanation
Indices: 60618771--60619106 Score: 582
Period size: 181 Copynumber: 1.9 Consensus size: 181
60618761 TGAAGTTGCT
*
60618771 GTGGAATGAATTGAAGAAGATGGCGAATCTTATCTCCCTGAAGGTACAGTAGAGTAGATTAAAGC
1 GTGGAATGAATTGAAGAAGATGGCGAATCTTATCTCCCTGAAGGTACAGTAGAGCAGATTAAAGC
* *
60618836 CAATAATCCTATCTCCCTGAAGTTACAGTGGATCAGATTAAAGTTACAAGTCTTAACTCCTTGAA
66 CAATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGTTACAAGTCTTAACTCCCTGAA
*
60618901 GTTGTAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTAAAGTTACA
131 GTTGCAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTAAAGTTACA
* *
60618952 GTGGAATGAATTGAAGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGC
1 GTGGAATGAATTGAAGAAGATGGCGAATCTTATCTCCCTGAAGGTACAGTAGAGCAGATTAAAGC
* * * *
60619017 TAATAATCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAA
66 CAATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGTTACAAGTCTTAACTCCCTGAA
60619082 GTTGCAGTGGAGCAGACTGAAGAAA
131 GTTGCAGTGGAGCAGACTGAAGAAA
60619107 GTAATCCTAT
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
181 145 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (181 bp):
GTGGAATGAATTGAAGAAGATGGCGAATCTTATCTCCCTGAAGGTACAGTAGAGCAGATTAAAGC
CAATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGTTACAAGTCTTAACTCCCTGAA
GTTGCAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTAAAGTTACA
Found at i:60619428 original size:41 final size:41
Alignment explanation
Indices: 60619371--60619565 Score: 144
Period size: 41 Copynumber: 4.6 Consensus size: 41
60619361 GCTATCACAG
*
60619371 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATGACAA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATGACAA
* *
60619412 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTACA-GCCAATA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-T-CATGAC-A-A
* * * *
60619456 ATCTGATCTCCCTGAAGTTGCAGTGGAGCA-AAC-TGAAAA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATGACAA
* * * * *
60619495 TAGCGGGTCTTATCTCTCTAAAGTTGTAGTAGAGCAGACCATAACAA
1 -A-----TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATGACAA
* * *
60619542 GTCCTATCCCCCTGAAGTTGCAGT
1 ATCTTATCTCCCTGAAGTTGCAGT
60619566 GGGTTAGATT
Statistics
Matches: 120, Mismatches: 21, Indels: 26
0.72 0.13 0.16
Matches are distributed among these distances:
39 1 0.01
40 2 0.02
41 50 0.42
42 3 0.03
43 4 0.03
44 30 0.25
45 24 0.20
46 2 0.02
47 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (41 bp):
ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATGACAA
Found at i:60621084 original size:3 final size:3
Alignment explanation
Indices: 60621076--60621126 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
60621066 TAATTAATTA
* * *
60621076 ATT ATT ATT ATT ATTT ATT ATT ATT ACT CTT ATT AGT ATT GA-T ATT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
60621122 ATT AT
1 ATT AT
60621127 ATTTGGTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 1 0.03
3 34 0.87
4 4 0.10
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:60624043 original size:21 final size:21
Alignment explanation
Indices: 60624019--60624068 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
60624009 TAACCCCACC
*
60624019 TTTGACCATCATCATAACAAT
1 TTTGACCATCACCATAACAAT
*
60624040 TTTGACCATCACCATAACTAT
1 TTTGACCATCACCATAACAAT
60624061 TTTGACCA
1 TTTGACCA
60624069 AGGTTATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (21 bp):
TTTGACCATCACCATAACAAT
Found at i:60627131 original size:26 final size:25
Alignment explanation
Indices: 60627070--60627137 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
60627060 TTATATGATC
*
60627070 AAATGAGTAATATTATATAATTTAAAT
1 AAATGA-TAA-ATTATATAAATTAAAT
** *
60627097 AAAAAATAAATTATATTAAATTATAT
1 AAATGATAAATTATA-TAAATTAAAT
*
60627123 AAATGATAAAATATA
1 AAATGATAAATTATA
60627138 ATTTCATAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
25 6 0.18
26 23 0.70
27 4 0.12
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (25 bp):
AAATGATAAATTATATAAATTAAAT
Found at i:60627590 original size:22 final size:23
Alignment explanation
Indices: 60627565--60627625 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
60627555 TTTGATAATG
60627565 ATATTTTAATATAATTA-TAAAA
1 ATATTTTAATATAATTATTAAAA
* **
60627587 ATATTTTAATAAAATGTATTAATG
1 ATATTTTAATATAAT-TATTAAAA
60627611 A-ATTTTAATATAATT
1 ATATTTTAATATAATT
60627626 TATGATAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 15 0.45
23 14 0.42
24 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (23 bp):
ATATTTTAATATAATTATTAAAA
Found at i:60627634 original size:25 final size:25
Alignment explanation
Indices: 60627553--60627640 Score: 80
Period size: 23 Copynumber: 3.7 Consensus size: 25
60627543 TATAATTATT
60627553 ATTT-TGATAATGATATTTTAATATA
1 ATTTATGATAATGA-ATTTTAATATA
* * *
60627578 A-TTATAAAAAT--ATTTTAATAAA
1 ATTTATGATAATGAATTTTAATATA
*
60627600 ATGTAT--TAATGAATTTTAATATA
1 ATTTATGATAATGAATTTTAATATA
*
60627623 ATTTATGATAATAAATTT
1 ATTTATGATAATGAATTT
60627641 ATATTTTTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
21 3 0.06
22 11 0.22
23 18 0.37
24 2 0.04
25 15 0.31
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.48
Consensus pattern (25 bp):
ATTTATGATAATGAATTTTAATATA
Found at i:60632189 original size:12 final size:12
Alignment explanation
Indices: 60632163--60632209 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
60632153 TTAGAAATTT
*
60632163 ATTTTTATTAT-
1 ATTTTTATTTTC
60632174 ATTTTTATTTTC
1 ATTTTTATTTTC
* *
60632186 ATTTTTAGTTTA
1 ATTTTTATTTTC
*
60632198 ATTTTTGTTTTC
1 ATTTTTATTTTC
60632210 TAATTTTTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
11 10 0.34
12 19 0.66
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.72
Consensus pattern (12 bp):
ATTTTTATTTTC
Found at i:60632226 original size:11 final size:11
Alignment explanation
Indices: 60632160--60632208 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
60632150 AATTTAGAAA
60632160 TTTATTTTTAT
1 TTTATTTTTAT
*
60632171 TATATTTTTAT
1 TTTATTTTTAT
60632182 TTTCATTTTTAGT
1 TTT-ATTTTTA-T
* *
60632195 TTAATTTTTGT
1 TTTATTTTTAT
60632206 TTT
1 TTT
60632209 CTAATTTTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
11 15 0.48
12 13 0.42
13 3 0.10
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:60636122 original size:21 final size:21
Alignment explanation
Indices: 60636098--60636153 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 21
60636088 TTCTTGTCTA
60636098 TTATTATTCTTATTACTT-ATT
1 TTATTATTCTTATTA-TTCATT
60636119 TTATT-TTC-T-TTATTCATT
1 TTATTATTCTTATTATTCATT
60636137 TT-TTATTCTCTATTATT
1 TTATTATTCT-TATTATT
60636154 TTCTATTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
17 4 0.13
18 11 0.37
19 1 0.03
20 4 0.13
21 10 0.33
ACGTcount: A:0.20, C:0.11, G:0.00, T:0.70
Consensus pattern (21 bp):
TTATTATTCTTATTATTCATT
Found at i:60636137 original size:18 final size:17
Alignment explanation
Indices: 60636114--60636162 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
60636104 TTCTTATTAC
*
60636114 TTATTTTATT-TTCTTTA
1 TTATTTT-TTATTCTCTA
60636131 TTCATTTTTTATTCTCTA
1 TT-ATTTTTTATTCTCTA
*
60636149 TTATTTTCTATTCT
1 TTATTTTTTATTCT
60636163 TAGTTATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTTTTTATTCTCTA
Found at i:60636169 original size:17 final size:17
Alignment explanation
Indices: 60636114--60636162 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
60636104 TTCTTATTAC
* * *
60636114 TTATTTTATTTTCTTTA
1 TTATTTTCTATTCTCTA
*
60636131 TTCATTTTTTATTCTCTA
1 TT-ATTTTCTATTCTCTA
60636149 TTATTTTCTATTCT
1 TTATTTTCTATTCT
60636163 TAGTTATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTTTCTATTCTCTA
Found at i:60636177 original size:52 final size:52
Alignment explanation
Indices: 60636075--60636177 Score: 120
Period size: 52 Copynumber: 2.0 Consensus size: 52
60636065 TTCTTTATTA
* * * *
60636075 TTTATTTATTTGTTTCTTGTCTATTATTATTCTTATTACTTATTTTATTTTC
1 TTTATTCATTTGTTTATTCTCTATTATTATTCTTATTACTTATATTATTTTC
* *
60636127 TTTATTCATTT-TTTATTCTCTATTATT-TTCTATTCTTAGTTATATTATTTT
1 TTTATTCATTTGTTTATTCTCTATTATTATTC--TTATTACTTATATTATTTT
60636178 ATTTTTCTGG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
50 3 0.07
51 14 0.33
52 26 0.60
ACGTcount: A:0.18, C:0.10, G:0.03, T:0.69
Consensus pattern (52 bp):
TTTATTCATTTGTTTATTCTCTATTATTATTCTTATTACTTATATTATTTTC
Found at i:60636179 original size:48 final size:51
Alignment explanation
Indices: 60636070--60636180 Score: 124
Period size: 51 Copynumber: 2.2 Consensus size: 51
60636060 CTATTTTCTT
* * * *
60636070 TATTA-TTTATTTATTTGTTTCTTGTCTATTATTATTCTTATTACTTATTT
1 TATTATTTTATTCATTTGTTTATTCTCTATTATTATTCTTATTACTTATTA
*
60636120 TATTTTCTTTATTCATTT-TTTATTCTCTATTATT-TTC-TATT-CTTAGTTA
1 TATTAT-TTTATTCATTTGTTTATTCTCTATTATTATTCTTATTACTTA-TTA
60636169 TATTATTTTATT
1 TATTATTTTATT
60636181 TTTCTGGTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
48 10 0.19
49 11 0.21
50 7 0.13
51 14 0.27
52 10 0.19
ACGTcount: A:0.20, C:0.09, G:0.03, T:0.68
Consensus pattern (51 bp):
TATTATTTTATTCATTTGTTTATTCTCTATTATTATTCTTATTACTTATTA
Found at i:60637797 original size:6 final size:6
Alignment explanation
Indices: 60637786--60637824 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
60637776 AGTTTATTTG
* * *
60637786 TTTTAT TTTTAT TTTTAT GTTTAT ATTTAT TGTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
60637825 CTTATACTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:60643430 original size:15 final size:15
Alignment explanation
Indices: 60643406--60643435 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
60643396 GCAATGGTTT
*
60643406 TCACATGGGCGTGTG
1 TCACACGGGCGTGTG
60643421 TCACACGGGCGTGTG
1 TCACACGGGCGTGTG
60643436 AGGGATTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.40, T:0.23
Consensus pattern (15 bp):
TCACACGGGCGTGTG
Found at i:60647234 original size:11 final size:11
Alignment explanation
Indices: 60647220--60647245 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
60647210 AAAAACAAGT
60647220 AAAATTGAACA
1 AAAATTGAACA
60647231 AAAATTGAACA
1 AAAATTGAACA
60647242 AAAA
1 AAAA
60647246 GAGCTTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAATTGAACA
Found at i:60657863 original size:28 final size:28
Alignment explanation
Indices: 60657814--60657877 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
60657804 TAAATGCTAA
*
60657814 TTTTAAACTATTAAATAATAAATA-ACAT
1 TTTTAAACTATTAAACAATAAA-AGACAT
* * * *
60657842 TTTTAAATTGTTAAACAGTAAAAGAGAT
1 TTTTAAACTATTAAACAATAAAAGACAT
60657870 TTTTAAAC
1 TTTTAAAC
60657878 CTTCAATTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (28 bp):
TTTTAAACTATTAAACAATAAAAGACAT
Found at i:60685287 original size:5 final size:5
Alignment explanation
Indices: 60685281--60685334 Score: 65
Period size: 5 Copynumber: 10.8 Consensus size: 5
60685271 TGCTTGATGA
* * *
60685281 AATGA AATGA AATGG AAT-G ATATGG AATGG AATGG TATGG AATGG AATGG
1 AATGG AATGG AATGG AATGG A-ATGG AATGG AATGG AATGG AATGG AATGG
60685331 AATG
1 AATG
60685335 AAATAATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
4 2 0.05
5 40 0.91
6 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24
Consensus pattern (5 bp):
AATGG
Found at i:60685359 original size:15 final size:17
Alignment explanation
Indices: 60685333--60685364 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
60685323 TGGAATGGAA
60685333 TGAAATAATATA-AAAT
1 TGAAATAATATATAAAT
60685349 TGAAA-AATATATAAAT
1 TGAAATAATATATAAAT
60685365 GAATTGTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (17 bp):
TGAAATAATATATAAAT
Found at i:60690772 original size:25 final size:25
Alignment explanation
Indices: 60690738--60690798 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
60690728 TTACTTTTAG
60690738 AAGATAAATTTGGTGCTCCTTATGT
1 AAGATAAATTTGGTGCTCCTTATGT
*
60690763 AAGATAAATTTGGTGCTCTTTATGT
1 AAGATAAATTTGGTGCTCCTTATGT
60690788 AAGAATAAATT
1 AAG-ATAAATT
60690799 GATTAATGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 27 0.79
26 7 0.21
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.39
Consensus pattern (25 bp):
AAGATAAATTTGGTGCTCCTTATGT
Found at i:60694012 original size:18 final size:18
Alignment explanation
Indices: 60693971--60694012 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
60693961 AAAATGGCAA
* *
60693971 AGATGAGAAATGAGAATG
1 AGATTAGAAATGAAAATG
60693989 AGATTAGAAATGAAATATG
1 AGATTAGAAATGAAA-ATG
60694008 A-ATTA
1 AGATTA
60694013 ATGAATTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (18 bp):
AGATTAGAAATGAAAATG
Found at i:60694937 original size:30 final size:30
Alignment explanation
Indices: 60694903--60694960 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
60694893 GGGATGGGTC
* * * *
60694903 ACACATAGGCAACACACATGGGTATGTGTG
1 ACACACAGGCAACAAACATAGGCATGTGTG
*
60694933 ACACACGGGCAACAAACATAGGCATGTG
1 ACACACAGGCAACAAACATAGGCATGTG
60694961 GCCCAAGCCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.36, C:0.22, G:0.26, T:0.16
Consensus pattern (30 bp):
ACACACAGGCAACAAACATAGGCATGTGTG
Found at i:60695359 original size:49 final size:49
Alignment explanation
Indices: 60695302--60695397 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
60695292 AGGGATAATT
*
60695302 AGTGATAAGAGTGTAGACAGTGGAAGACTC-AGTTTAGCAATGTATAAAC
1 AGTGATAAGAGTGTAGACAGTGGAAGAC-CAAGTTTAGCAATGCATAAAC
60695351 AGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGCAATGCATAA
1 AGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGCAATGCATAA
60695398 GATGAATCAT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
48 1 0.02
49 44 0.98
ACGTcount: A:0.40, C:0.10, G:0.27, T:0.23
Consensus pattern (49 bp):
AGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGCAATGCATAAAC
Found at i:60711508 original size:87 final size:90
Alignment explanation
Indices: 60711417--60711629 Score: 254
Period size: 98 Copynumber: 2.3 Consensus size: 90
60711407 ATTTTTAATA
* * *
60711417 TTTTTAAT-ATTTTAT-ATTTTCTAAA-AAAATATTAT-TTTTTATAATTTATTTGAACTTGCTT
1 TTTTTTATAATTTTATAAGTTT-TAAATAAAATATAATATTTTTATAATTTATTTGAACTTGCTT
60711478 TGTATTTTTTATAAGAATTTATGAAT
65 TGTATTTTTTATAAGAATTTATGAAT
** *
60711504 TTTTTTATAATTTTTATAAGTTTTAAATGTTTTGGTTATTATAATATTTTTATAATTTATTTGAA
1 TTTTTTATAA-TTTTATAAGTTTTAAA-----T--AAAATATAATATTTTTATAATTTATTTGAA
60711569 CTTGCTTTGTATTTTTTATAAGAATTTATGAAT
58 CTTGCTTTGTATTTTTTATAAGAATTTATGAAT
60711602 TTTTTTATAATTTTTATAAGTTTTAAAT
1 TTTTTTATAA-TTTTATAAGTTTTAAAT
60711630 GTTTTGGTTA
Statistics
Matches: 108, Mismatches: 6, Indels: 18
0.82 0.05 0.14
Matches are distributed among these distances:
87 7 0.06
88 1 0.01
89 10 0.09
90 4 0.04
93 1 0.01
97 6 0.06
98 79 0.73
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.59
Consensus pattern (90 bp):
TTTTTTATAATTTTATAAGTTTTAAATAAAATATAATATTTTTATAATTTATTTGAACTTGCTTT
GTATTTTTTATAAGAATTTATGAAT
Found at i:60711518 original size:31 final size:31
Alignment explanation
Indices: 60711483--60711621 Score: 106
Period size: 31 Copynumber: 4.3 Consensus size: 31
60711473 TGCTTTGTAT
60711483 TTTTTATAAGAATTTATGAATTTTTTTATAA
1 TTTTTATAAGAATTTATGAATTTTTTTATAA
* *
60711514 TTTTTATAAG-TTTTAAATG-TTTTGGTTATTATAA
1 TTTTTATAAGAATTT--ATGAATTT--TT-TTATAA
* ** * *
60711548 TATTTT-T-ATAATTTATTTGAACTTGCTTTGTAT
1 T-TTTTATAAGAATTTA--TGAA-TTTTTTTATAA
60711581 TTTTTATAAGAATTTATGAATTTTTTTATAA
1 TTTTTATAAGAATTTATGAATTTTTTTATAA
60711612 TTTTTATAAG
1 TTTTTATAAG
60711622 TTTTAAATGT
Statistics
Matches: 81, Mismatches: 14, Indels: 26
0.67 0.12 0.21
Matches are distributed among these distances:
30 3 0.04
31 30 0.37
32 12 0.15
33 9 0.11
34 21 0.26
35 4 0.05
36 2 0.02
ACGTcount: A:0.31, C:0.01, G:0.09, T:0.59
Consensus pattern (31 bp):
TTTTTATAAGAATTTATGAATTTTTTTATAA
Found at i:60711557 original size:98 final size:98
Alignment explanation
Indices: 60711452--60711662 Score: 422
Period size: 98 Copynumber: 2.2 Consensus size: 98
60711442 AAAATATTAT
60711452 TTTTTATAATTTATTTGAACTTGCTTTGTATTTTTTATAAGAATTTATGAATTTTTTTATAATTT
1 TTTTTATAATTTATTTGAACTTGCTTTGTATTTTTTATAAGAATTTATGAATTTTTTTATAATTT
60711517 TTATAAGTTTTAAATGTTTTGGTTATTATAATA
66 TTATAAGTTTTAAATGTTTTGGTTATTATAATA
60711550 TTTTTATAATTTATTTGAACTTGCTTTGTATTTTTTATAAGAATTTATGAATTTTTTTATAATTT
1 TTTTTATAATTTATTTGAACTTGCTTTGTATTTTTTATAAGAATTTATGAATTTTTTTATAATTT
60711615 TTATAAGTTTTAAATGTTTTGGTTATTATAATA
66 TTATAAGTTTTAAATGTTTTGGTTATTATAATA
60711648 TTTTTATAATTTATT
1 TTTTTATAATTTATT
60711663 AGATTTTTCT
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 113 1.00
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (98 bp):
TTTTTATAATTTATTTGAACTTGCTTTGTATTTTTTATAAGAATTTATGAATTTTTTTATAATTT
TTATAAGTTTTAAATGTTTTGGTTATTATAATA
Found at i:60716205 original size:30 final size:30
Alignment explanation
Indices: 60716169--60716447 Score: 225
Period size: 30 Copynumber: 9.4 Consensus size: 30
60716159 CAATAGACCA
*
60716169 ATGAAAAGGGATAGCTTCGACTATCGAACT
1 ATGAAAAGGGATAGCTTCGACTATCAAACT
* *
60716199 ATGAAAAGGGATAGCTCCGACTATCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCAAACT
* * * *
60716229 ATGAAAAAGGAT-GGTGAT-GACCATC-AACA
1 ATGAAAAGGGATAGCT--TCGACTATCAAACT
* * * *
60716258 ATGAAAAAGGAT-GGTGACGACCATCAAACT
1 ATGAAAAGGGATAGCT-TCGACTATCAAACT
* * *
60716288 ATGAAAAGGGATAGCTTCGGCTATCGAATT
1 ATGAAAAGGGATAGCTTCGACTATCAAACT
*
60716318 ATGAAAAGGGATAGCTTCGACTATCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCAAACT
* * *
60716348 ATGAAAAGGGAT-GGTGAT-GACCATC-GACT
1 ATGAAAAGGGATAGCT--TCGACTATCAAACT
* * * *
60716377 ATGAAAAGGGAT-GGTGACGACCATCAAAAT
1 ATGAAAAGGGATAGCT-TCGACTATCAAACT
*
60716407 ATG-AAAGGGATAGCTTCGACTATCGAACT
1 ATGAAAAGGGATAGCTTCGACTATCAAACT
*
60716436 ATGGAAAGGGAT
1 ATGAAAAGGGAT
60716448 GGTAAAAACC
Statistics
Matches: 204, Mismatches: 34, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
29 73 0.36
30 128 0.63
31 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGACTATCAAACT
Found at i:60716318 original size:89 final size:88
Alignment explanation
Indices: 60716186--60716450 Score: 252
Period size: 89 Copynumber: 3.0 Consensus size: 88
60716176 GGGATAGCTT
* *
60716186 CGACTATCGAACTATGAAAAGGGATAGCTCCGACTATCAAATTATGAAAAAGGAT-GGTGAT-GA
1 CGACCATC-AACTATGAAAAGGGATAGCTCCGACTATCAAATTATGAAAAAGGATAGCT--TCGA
60716249 CCATCAACA-ATGAAAAAGGATGGTGA
63 CCATCAA-ATATGAAAAAGGATGGTGA
* * * * *
60716275 CGACCATCAAACTATGAAAAGGGATAGCTTCGGCTATCGAATTATGAAAAGGGATAGCTTCGACT
1 CGACCATC-AACTATGAAAAGGGATAGCTCCGACTATCAAATTATGAAAAAGGATAGCTTCGACC
*
60716340 ATCAAATTATGAAAAGGGATGGTGA
65 ATCAAA-TATGAAAAAGGATGGTGA
* * * * * * * *
60716365 TGACCATCGACTATGAAAAGGGAT-GGTGACGACCATCAAAATATG-AAAGGGATAGCTTCGACT
1 CGACCATCAACTATGAAAAGGGATAGCT-CCGACTATCAAATTATGAAAAAGGATAGCTTCGACC
* * *
60716428 ATCGAACTATGGAAAGGGATGGT
65 ATC-AAATATGAAAAAGGATGGT
60716451 AAAAACCATC
Statistics
Matches: 151, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
88 40 0.26
89 86 0.57
90 25 0.17
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (88 bp):
CGACCATCAACTATGAAAAGGGATAGCTCCGACTATCAAATTATGAAAAAGGATAGCTTCGACCA
TCAAATATGAAAAAGGATGGTGA
Found at i:60716381 original size:119 final size:119
Alignment explanation
Indices: 60716169--60716447 Score: 470
Period size: 119 Copynumber: 2.4 Consensus size: 119
60716159 CAATAGACCA
60716169 ATGAAAAGGGATAGCTTCGACTATCGAACTATGAAAAGGGATAGCTCCGACTATCAAATTATGAA
1 ATGAAAAGGGATAGCTTCGACTATCGAACTATGAAAAGGGATAGCTCCGACTATCAAATTATGAA
*
60716234 AAAGGATGGTGATGACCATCAACAATGAAAAAGGATGGTGACGACCATCAAACT
66 AAAGGATGGTGATGACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAAT
* * *
60716288 ATGAAAAGGGATAGCTTCGGCTATCGAATTATGAAAAGGGATAGCTTCGACTATCAAATTATGAA
1 ATGAAAAGGGATAGCTTCGACTATCGAACTATGAAAAGGGATAGCTCCGACTATCAAATTATGAA
* * * *
60716353 AAGGGATGGTGATGACCATCGACTATGAAAAGGGATGGTGACGACCATCAAAAT
66 AAAGGATGGTGATGACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAAT
*
60716407 ATG-AAAGGGATAGCTTCGACTATCGAACTATGGAAAGGGAT
1 ATGAAAAGGGATAGCTTCGACTATCGAACTATGAAAAGGGAT
60716448 GGTAAAAACC
Statistics
Matches: 149, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
118 35 0.23
119 114 0.77
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (119 bp):
ATGAAAAGGGATAGCTTCGACTATCGAACTATGAAAAGGGATAGCTCCGACTATCAAATTATGAA
AAAGGATGGTGATGACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAAT
Found at i:60720877 original size:27 final size:27
Alignment explanation
Indices: 60720846--60721023 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
60720836 TAAATTGTAC
60720846 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60720873 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
60720899 ATGCACTAAGTGTGTGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60720927 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60720955 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60720982 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
60721009 AGCATTGAGTGTGCG
1 AGCACTAAGTGTGCG
60721024 GACTCAATAT
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60721023 original size:82 final size:81
Alignment explanation
Indices: 60720843--60721002 Score: 214
Period size: 82 Copynumber: 2.0 Consensus size: 81
60720833 GATTAAATTG
* *
60720843 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
60720908 GTGTGTGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60720924 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
*
60720988 AAGTGTGCGAGTTGA
64 AAGTGTGCGAATTGA
60721003 TTATATAGCA
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
81 18 0.26
82 50 0.74
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60729085 original size:27 final size:27
Alignment explanation
Indices: 60729048--60729338 Score: 246
Period size: 27 Copynumber: 10.6 Consensus size: 27
60729038 TAAATTGTAC
* * *
60729048 AGCACCAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
60729074 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
60729102 GGCACTAAGTGTGAGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
60729130 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
60729157 AGCACTAAGTGTGCGAGGGATTAAAT-TGT
1 AGCACTAAGTGTGCGA---ATTGACTATGT
* *
60729186 ACAGCACTAAGTGTGCGAAATGAATATG-
1 --AGCACTAAGTGTGCGAATTGACTATGT
* *
60729214 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
60729242 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
60729270 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60729297 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60729324 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60729339 GACTCAATAT
Statistics
Matches: 220, Mismatches: 33, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.01
27 144 0.65
28 50 0.23
29 4 0.02
30 4 0.02
31 16 0.07
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:60729137 original size:55 final size:54
Alignment explanation
Indices: 60729048--60729336 Score: 215
Period size: 55 Copynumber: 5.2 Consensus size: 54
60729038 TAAATTGTAC
* * * * * *
60729048 AGCACCAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGAGAATTGACTATGTA-GCACTAAGTGTGCGAATTGACTATGT
* * * * *
60729102 GGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGAGA-ATTGACTATGTAGCACTAAGTGTGCGAATTGACTATGT
* * * * *
60729157 AGCACTAAGTGTGCGAGGGATTAAAT-TGTACAGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGT--GA-GAATTGACTATGT--AGCACTAAGTGTGCGAATTGACTATGT
* * ** *
60729214 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGAGAATTGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGT
* * * * * * *
60729270 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGAGAATTGACTATGTAGCACTAAGTGTGCGAATTGACTATGT
*
60729324 AGCACTGAGTGTG
1 AGCACTAAGTGTG
60729337 CGGACTCAAT
Statistics
Matches: 184, Mismatches: 40, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
54 48 0.26
55 87 0.47
56 8 0.04
57 7 0.04
58 34 0.18
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGAGAATTGACTATGTAGCACTAAGTGTGCGAATTGACTATGT
Found at i:60729198 original size:113 final size:113
Alignment explanation
Indices: 60729076--60729285 Score: 296
Period size: 113 Copynumber: 1.9 Consensus size: 113
60729066 TGAATATGAT
* * * * * *
60729076 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGAAATGAACATGAGGCACTAAGTGTGAGA-ATTGACCATGCAGCACTAAGTG
*
60729141 TGCGA-TTTGATTACGTAGCACTAAGTGTGCGAGGGATTAAATTGTACA
65 TGCGAGTTTGACTACGTAGCACTAAGTGTGCGAGGGATTAAATTGTACA
* * * *
60729189 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGT
1 GCACTAAGTGTGCGAAATGAACATGAGGCACTAAGTGTGAGAATTGACCATGCAGCACTAAGTGT
*
60729254 GCGAGTTTGACTATGTAGCACTAAGTGTGCGA
66 GCGAGTTTGACTACGTAGCACTAAGTGTGCGA
60729286 TTTGATTACG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
112 23 0.27
113 61 0.73
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (113 bp):
GCACTAAGTGTGCGAAATGAACATGAGGCACTAAGTGTGAGAATTGACCATGCAGCACTAAGTGT
GCGAGTTTGACTACGTAGCACTAAGTGTGCGAGGGATTAAATTGTACA
Found at i:60729279 original size:140 final size:139
Alignment explanation
Indices: 60729023--60729313 Score: 539
Period size: 140 Copynumber: 2.1 Consensus size: 139
60729013 GAGATTGGCG
*
60729023 CTAAGTGCGCGA-GATTAAATTGTACAGCACCAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 CTAAGTGTGCGAGGATTAAATTGTACAGCACCAAGTGTGCGAAATGAATATGATGCACTAAGTGT
60729087 GCGAATTGACCATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGAT
66 GCGAATTGACCATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGAT
60729152 TACGTAGCA
131 TACGTAGCA
*
60729161 CTAAGTGTGCGAGGGATTAAATTGTACAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 CTAAGTGTGCGA-GGATTAAATTGTACAGCACCAAGTGTGCGAAATGAATATGATGCACTAAGTG
*
60729226 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGA
65 TGCGAATTGACCATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGA
60729291 TTACGTAGCA
130 TTACGTAGCA
60729301 CTAAGTGTGCGAG
1 CTAAGTGTGCGAG
60729314 TTGATTATAT
Statistics
Matches: 148, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
138 11 0.07
139 1 0.01
140 136 0.92
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (139 bp):
CTAAGTGTGCGAGGATTAAATTGTACAGCACCAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGAT
TACGTAGCA
Found at i:60729388 original size:140 final size:138
Alignment explanation
Indices: 60729023--60729349 Score: 455
Period size: 140 Copynumber: 2.4 Consensus size: 138
60729013 GAGATTGGCG
* * * * * *
60729023 CTAAGTGCGCGA-GATTAAATTGTACAGCACCAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 CTAAGTGTGCGAGGATTAAATTATACAGCACTAAGTGTGCGAAATCAATATGATGCAATAAGTAT
60729087 GCGAATTGACCATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGAT
66 GCGAATTGA-CATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGAT
60729152 TACGTAGCA
130 TACGTAGCA
* * * *
60729161 CTAAGTGTGCGAGGGATTAAATTGTACAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 CTAAGTGTGCGA-GGATTAAATTATACAGCACTAAGTGTGCGAAATCAATATGATGCAATAAGTA
*
60729226 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGA
65 TGCGAATTGA-CATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGA
60729291 TTACGTAGCA
129 TTACGTAGCA
* * * * *
60729301 CTAAGTGTGCGA-G-TT-GATTATATAGCACTGAGTGTGCGGACTCAATATG
1 CTAAGTGTGCGAGGATTAAATTATACAGCACTAAGTGTGCGAAATCAATATG
60729350 CATTCGTGAA
Statistics
Matches: 177, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
136 27 0.15
137 2 0.01
138 12 0.07
140 136 0.77
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (138 bp):
CTAAGTGTGCGAGGATTAAATTATACAGCACTAAGTGTGCGAAATCAATATGATGCAATAAGTAT
GCGAATTGACATGCGGCACTAAGTGTGAGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATT
ACGTAGCA
Found at i:60735186 original size:200 final size:200
Alignment explanation
Indices: 60734838--60735236 Score: 780
Period size: 200 Copynumber: 2.0 Consensus size: 200
60734828 CAAGTATTAC
* *
60734838 GATGGCACCTTACGAGGCTTTGTACGGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCG
1 GATGACACCTTACGAGGCTTTGTACAGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCG
60734903 GTGAAAGTAAAATTTTCGGAGTTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGTAATCCGT
66 GTGAAAGTAAAATTTTCGGAGTTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGTAATCCGT
60734968 GAAAGTCTGAAAGCAGCCACAGATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGA
131 GAAAGTCTGAAAGCAGCCACAGATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGA
60735033 ATATA
196 ATATA
60735038 GATGACACCTTACGAGGCTTTGTACAGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCG
1 GATGACACCTTACGAGGCTTTGTACAGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCG
60735103 GTGAAAGTAAAATTTTCGGAGTTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGTAATCCGT
66 GTGAAAGTAAAATTTTCGGAGTTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGTAATCCGT
60735168 GAAAGTCTGAAAGCAGCCACAGATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGA
131 GAAAGTCTGAAAGCAGCCACAGATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGA
60735233 ATAT
196 ATAT
60735237 CAGGTGGGAG
Statistics
Matches: 197, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 197 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (200 bp):
GATGACACCTTACGAGGCTTTGTACAGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCG
GTGAAAGTAAAATTTTCGGAGTTGATTTGATTAAAGATGCCGAACAGAAAGTAAAGGTAATCCGT
GAAAGTCTGAAAGCAGCCACAGATCGTCAGAAATCGTATGCGGATTTGAAACGAAAAGACATTGA
ATATA
Found at i:60737580 original size:27 final size:27
Alignment explanation
Indices: 60737549--60737726 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60737539 TAAATTGTAC
60737549 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60737576 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60737602 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60737630 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60737658 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60737685 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60737712 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60737727 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60737663 original size:82 final size:81
Alignment explanation
Indices: 60737550--60737705 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60737540 AAATTGTACA
* *
60737550 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60737614 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60737631 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60737696 TGCGAGTTGA
65 TGCGAATTGA
60737706 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60737717 original size:82 final size:81
Alignment explanation
Indices: 60737546--60737726 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60737536 GATTAAATTG
* *
60737546 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60737611 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60737627 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60737691 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60737709 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60737727 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60739087 original size:45 final size:45
Alignment explanation
Indices: 60739036--60739125 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
60739026 TTAACACCTC
*
60739036 GTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACCGGTG
1 GTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACAGGTG
60739081 GTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACAGGTG
1 GTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACAGGTG
60739126 ATCTCCGACG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.06, C:0.19, G:0.42, T:0.33
Consensus pattern (45 bp):
GTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACAGGTG
Found at i:60739436 original size:53 final size:55
Alignment explanation
Indices: 60739372--60739578 Score: 204
Period size: 53 Copynumber: 3.8 Consensus size: 55
60739362 TTCCTTTTTA
*
60739372 AACTTACCATTGCAATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGT
* * * * *
60739425 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGT
** * * * * * **
60739480 AGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGT-AA
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGT
* * * * * *
60739534 AACTTACCAATGCCATGCCTAGGCATGGTCTTACTTGTTATCCTT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTT
60739579 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 46 0.37
54 37 0.30
55 40 0.33
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGT
Found at i:60750305 original size:39 final size:39
Alignment explanation
Indices: 60750262--60750336 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
60750252 CCAGAGTATG
* *
60750262 ATCTGATACTCTAATGCTAATAATTAGAATGGTCTTATA
1 ATCTGATACTATAATGCTAATAATTAGAATAGTCTTATA
60750301 ATCTGATACTATAATGCTAATAATTAGAATAGTCTT
1 ATCTGATACTATAATGCTAATAATTAGAATAGTCTT
60750337 GTTATGCATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (39 bp):
ATCTGATACTATAATGCTAATAATTAGAATAGTCTTATA
Found at i:60751704 original size:17 final size:17
Alignment explanation
Indices: 60751672--60751704 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
60751662 AATAAACATA
60751672 TACTAAATATATAATAC
1 TACTAAATATATAATAC
60751689 TACTATAATATA-AATA
1 TACTA-AATATATAATA
60751705 TTAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
TACTAAATATATAATAC
Found at i:60752274 original size:11 final size:11
Alignment explanation
Indices: 60752252--60752284 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
60752242 AGATTTTTTT
60752252 GGCCCGGGCCCG
1 GGCCC-GGCCCG
60752264 GGCCCGGCCCG
1 GGCCCGGCCCG
60752275 GG-CCGGCCCG
1 GGCCCGGCCCG
60752285 ATTTTAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 8 0.38
12 5 0.24
ACGTcount: A:0.00, C:0.52, G:0.48, T:0.00
Consensus pattern (11 bp):
GGCCCGGCCCG
Found at i:60752446 original size:9 final size:8
Alignment explanation
Indices: 60752435--60752462 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
60752425 TAGTTTTAAT
60752435 TTTTTCAA
1 TTTTTCAA
60752443 TTTTTCAA
1 TTTTTCAA
60752451 TTTTTCAA
1 TTTTTCAA
60752459 TTTT
1 TTTT
60752463 AATATAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (8 bp):
TTTTTCAA
Found at i:60752559 original size:19 final size:19
Alignment explanation
Indices: 60752531--60752568 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
60752521 TCCCATTATT
*
60752531 TATTTATTTTTTGTTTTAA
1 TATTTATTTTATGTTTTAA
*
60752550 TATTTGTTTTATGTTTTAA
1 TATTTATTTTATGTTTTAA
60752569 ATGTATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (19 bp):
TATTTATTTTATGTTTTAA
Found at i:60756759 original size:3 final size:3
Alignment explanation
Indices: 60756751--60756952 Score: 83
Period size: 3 Copynumber: 67.3 Consensus size: 3
60756741 AAGAGAAAAT
** * *
60756751 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACC AGA AAA AGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
* * * * * * *
60756800 A-A TATA ATC ATA GT- ATA AAA AAA ATA ATA GTA GTA ATA ATA TTA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
60756844 ATA AAA AGA GT- ATA A-A AAA ATA ATGA ATA TATA GTA ATA TCTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA -ATA ATA ATA -ATA ATA
* * * * * * **
60756890 ATT ATG A-A ATA ACA CTA ATA ATTA AGA AGA GGA A-A ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
60756934 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
60756953 AATTAATTAA
Statistics
Matches: 151, Mismatches: 36, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
2 8 0.05
3 129 0.85
4 14 0.09
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:60759419 original size:23 final size:23
Alignment explanation
Indices: 60759392--60759467 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
60759382 AGTGTTATTG
*
60759392 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
60759415 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
60759438 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
60759461 ATCAGTG
1 ATCAGTG
60759468 TTGCACTTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:60766820 original size:23 final size:23
Alignment explanation
Indices: 60766793--60766868 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
60766783 AGTGTTATTG
*
60766793 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
60766816 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
60766839 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
60766862 ATCAGTG
1 ATCAGTG
60766869 TTGCACTTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:60768598 original size:88 final size:88
Alignment explanation
Indices: 60768476--60768962 Score: 794
Period size: 88 Copynumber: 5.5 Consensus size: 88
60768466 ACTACGGTGG
* * * *
60768476 TCTGTCATTTTCAGCCTGTTTTCCTTACTGCTTAGGGGGATAGGGCTCACCGTCTTCGATCTGCT
1 TCTGTAATTTTCAGCCTG-TTTCCCTACTGCTTAGGAGGATAAGGCTCACCGTCTTCGATCTGCT
*
60768541 CCACTACTGCTTAGGGAGATAAAA
65 CCACTACTGCTTAGGGAGATAAGA
* * *
60768565 TTTGTAATTTTCAGCCTGTTTGCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTGCTC
1 TCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCTCACCGTCTTCGATCTGCTC
*
60768630 CACTACTGCTTAGGGAGATAAAA
66 CACTACTGCTTAGGGAGATAAGA
* * *
60768653 TTTGTAATTTTCAGCCTGTTTGCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTGCTC
1 TCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCTCACCGTCTTCGATCTGCTC
*
60768718 CACTACTTCTTAGGGAGATAAGA
66 CACTACTGCTTAGGGAGATAAGA
* *
60768741 TCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCTCACTGTCTTTGATCTGCTC
1 TCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCTCACCGTCTTCGATCTGCTC
60768806 CACTACTGCTTAGGGAGATAAGA
66 CACTACTGCTTAGGGAGATAAGA
* * *
60768829 TCTGTAATTATCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCTCACTGTCTTTGATCTGCTC
1 TCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCTCACCGTCTTCGATCTGCTC
60768894 CACTACTGCTTAGGGAGATAAGA
66 CACTACTGCTTAGGGAGATAAGA
*
60768917 TCTGTAATTATCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCT
1 TCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCT
60768963 AGTCTAGGTT
Statistics
Matches: 384, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
88 368 0.96
89 16 0.04
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (88 bp):
TCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGAGGATAAGGCTCACCGTCTTCGATCTGCTC
CACTACTGCTTAGGGAGATAAGA
Found at i:60768944 original size:44 final size:43
Alignment explanation
Indices: 60768544--60768959 Score: 218
Period size: 44 Copynumber: 9.5 Consensus size: 43
60768534 ATCTGCTCCA
* * *
60768544 CTACTGCTTAGGGAGATAAAATTTGTAATTTTCAGCCTGTTTGC
1 CTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTTCC
* * * * * *
60768588 CTACTGCTTAGGGGGATAAGGCTCACCGT--CTTC-GATCTG-CTCC
1 CTACTGCTTAGGGAGATAA-GAT--CTGTAATTTCAG-CCTGTTTCC
* * *
60768631 ACTACTGCTTAGGGAGATAAAATTTGTAATTTTCAGCCTGTTTGC
1 -CTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTTCC
* * * * * *
60768676 CTACTGCTTAGGGGGATAAGGCTCACCGT--CTTC-GATCTG-CTCC
1 CTACTGCTTAGGGAGATAA-GAT--CTGTAATTTCAG-CCTGTTTCC
*
60768719 ACTACTTCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTTCC
* * * * *
60768764 CTACTGCTTA-GGAGGATAAGGCTCACTGT-CTTTGA-TCTG-CTCC
1 CTACTGCTTAGGGA-GATAA-GAT--CTGTAATTTCAGCCTGTTTCC
60768807 ACTACTGCTTAGGGAGATAAGATCTGTAATTATCAGCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGATCTGTAATT-TCAGCCTGTTTCC
* * * * *
60768852 CTACTGCTTA-GGAGGATAAGGCTCACTGT-CTTTGA-TCTG-CTCC
1 CTACTGCTTAGGGA-GATAA-GAT--CTGTAATTTCAGCCTGTTTCC
60768895 ACTACTGCTTAGGGAGATAAGATCTGTAATTATCAGCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGATCTGTAATT-TCAGCCTGTTTCC
60768940 CTACTGCTTA-GGAGGATAAG
1 CTACTGCTTAGGGA-GATAAG
60768960 GCTAGTCTAG
Statistics
Matches: 276, Mismatches: 55, Indels: 82
0.67 0.13 0.20
Matches are distributed among these distances:
41 13 0.05
42 4 0.01
43 32 0.12
44 182 0.66
45 31 0.11
46 2 0.01
47 12 0.04
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTCAGCCTGTTTCC
Found at i:60779622 original size:41 final size:41
Alignment explanation
Indices: 60779561--60779644 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
60779551 GCATCTGTAC
* *
60779561 TTGCAGTCGATCCTGCATTTCCTTCTGCTTTTGTTCCAGTT
1 TTGCAGCCGATCCTGCATTTCCTTCTGCATTTGTTCCAGTT
*
60779602 TTGCAGCCGATCCTGTATTTCCTTCTGCATTTGTTCCAGTT
1 TTGCAGCCGATCCTGCATTTCCTTCTGCATTTGTTCCAGTT
60779643 TT
1 TT
60779645 TTCAACCTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (41 bp):
TTGCAGCCGATCCTGCATTTCCTTCTGCATTTGTTCCAGTT
Found at i:60781835 original size:21 final size:20
Alignment explanation
Indices: 60781797--60781835 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
60781787 TATAAAAAAA
*
60781797 ATTTAAAAAAAATTATATCC
1 ATTTAAAAAAAATAATATCC
*
60781817 ATTTAAGATAAAATAATAT
1 ATTTAA-AAAAAATAATAT
60781836 ATAAAACTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (20 bp):
ATTTAAAAAAAATAATATCC
Found at i:60781873 original size:21 final size:23
Alignment explanation
Indices: 60781826--60781879 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
60781816 CATTTAAGAT
**
60781826 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
60781849 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
60781870 AAAAT-ATATA
1 AAAATAATATA
60781880 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:60781932 original size:51 final size:49
Alignment explanation
Indices: 60781827--60781949 Score: 119
Period size: 51 Copynumber: 2.5 Consensus size: 49
60781817 ATTTAAGATA
* * *
60781827 AAATAATATATAAAACTCTTTAAA-A-ATAATATATAAACAATTCAAAAT
1 AAATAATGTATAAAAAT-TTGAAATACATAATATATAAACAATTCAAAAT
* * *
60781875 ATATAATGTGTAAAAAAGTTTGAAATACATAATATATGAAA-ATATT-AAAGT
1 AAATAATGTAT-AAAAA-TTTGAAATACATAATATAT-AAACA-ATTCAAAAT
60781926 AAATAATGTATAAAAATTTGAAAT
1 AAATAATGTATAAAAATTTGAAAT
60781950 GAGCGTTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
48 8 0.13
49 17 0.28
50 7 0.11
51 23 0.38
52 6 0.10
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.33
Consensus pattern (49 bp):
AAATAATGTATAAAAATTTGAAATACATAATATATAAACAATTCAAAAT
Found at i:60782113 original size:15 final size:15
Alignment explanation
Indices: 60782089--60782134 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
60782079 ATATAAATAG
*
60782089 AAATAAAAATATAAT
1 AAATAGAAATATAAT
60782104 AAATAGAAATATAAT
1 AAATAGAAATATAAT
60782119 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
60782135 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:60782135 original size:29 final size:29
Alignment explanation
Indices: 60782102--60782218 Score: 85
Period size: 29 Copynumber: 4.0 Consensus size: 29
60782092 TAAAAATATA
*
60782102 ATAAATAGAAATATAATAATAGTAGAAAT
1 ATAAATAGAAATATAATAATAATAGAAAT
* * * *
60782131 ATAAATAGATAA-ATAAAAATTAGATAAAT
1 ATAAATAGA-AATATAATAATAATAGAAAT
* * * * * *
60782160 A-ATAATAGTATTAGAATAACAAAATAAAT
1 ATA-AATAGAAATATAATAATAATAGAAAT
* *
60782189 ATAAATAGAAACATAATAATAATAGCAAT
1 ATAAATAGAAATATAATAATAATAGAAAT
60782218 A
1 A
60782219 ATATATTAAA
Statistics
Matches: 64, Mismatches: 20, Indels: 8
0.70 0.22 0.09
Matches are distributed among these distances:
28 2 0.03
29 59 0.92
30 3 0.05
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.26
Consensus pattern (29 bp):
ATAAATAGAAATATAATAATAATAGAAAT
Found at i:60782137 original size:44 final size:44
Alignment explanation
Indices: 60782083--60782169 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
60782073 ATTAGTATAT
60782083 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
60782127 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
60782170 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:60782154 original size:15 final size:14
Alignment explanation
Indices: 60782081--60782197 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
60782071 ATATTAGTAT
*
60782081 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
60782094 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
60782110 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
60782124 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
60782139 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
60782154 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
60782168 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
60782183 ATAAATATAAATAG
1 ATAAATAAAAATAG
60782197 A
1 A
60782198 AACATAATAA
Statistics
Matches: 82, Mismatches: 11, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 6 0.07
14 22 0.27
15 35 0.43
16 6 0.07
17 7 0.09
ACGTcount: A:0.65, C:0.01, G:0.08, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:60785059 original size:16 final size:16
Alignment explanation
Indices: 60785038--60785073 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
60785028 TTTGGTTCGC
*
60785038 TGTATTGGATTAGAGA
1 TGTATTGAATTAGAGA
*
60785054 TGTATTGAATTAGAGG
1 TGTATTGAATTAGAGA
60785070 TGTA
1 TGTA
60785074 ATAGCAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.39
Consensus pattern (16 bp):
TGTATTGAATTAGAGA
Found at i:60785461 original size:59 final size:57
Alignment explanation
Indices: 60785289--60785464 Score: 158
Period size: 59 Copynumber: 3.0 Consensus size: 57
60785279 TTAATCATAT
* *
60785289 TTTAACATAATTATTATTAAAAACATTTTAATTAAAATATATAATTTAATAAAATTC
1 TTTAACATAATTATTATTAAAAATATTTTAATTAAAATATATAATTTAATAAAATTA
* ** * ** * * * *
60785346 TTAATAATCA-ATATTCTTATATAAATTTACTAAAATCATAATATATGATACT-ATAAAATATAA
1 TT--TAA-CATA-ATTATTAT-TAAAAATATTTTAATTAAAATATATAAT-TTAATAAAAT-T-A
60785409 TTTAACATAATTATTATTAAAAATATTTTAATTAAAATATATAATTTAATAAAATT
1 TTTAACATAATTATTATTAAAAATATTTTAATTAAAATATATAATTTAATAAAATT
60785465 CTTAATAATC
Statistics
Matches: 87, Mismatches: 22, Indels: 19
0.68 0.17 0.15
Matches are distributed among these distances:
57 2 0.02
58 2 0.02
59 31 0.36
60 18 0.21
61 30 0.34
62 2 0.02
63 2 0.02
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (57 bp):
TTTAACATAATTATTATTAAAAATATTTTAATTAAAATATATAATTTAATAAAATTA
Found at i:60793593 original size:18 final size:17
Alignment explanation
Indices: 60793551--60793594 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
60793541 CAAATACATT
*
60793551 TAAAAAATAGAAATAAA
1 TAAAAAATAGAAACAAA
*
60793568 TATTAAAATAAGAAACAAA
1 TA-AAAAAT-AGAAACAAA
60793587 TAAAAAAT
1 TAAAAAAT
60793595 GAGACTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 2 0.09
18 10 0.45
19 10 0.45
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (17 bp):
TAAAAAATAGAAACAAA
Found at i:60797762 original size:21 final size:22
Alignment explanation
Indices: 60797738--60797788 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
60797728 AAATCATATT
*
60797738 TAATTATTTTGTAATTTTTT-A
1 TAATTATTTTATAATTTTTTAA
* *
60797759 TAATTAGTTTATTATTTTTTAAA
1 TAATTATTTTATAATTTTTT-AA
60797782 TAATTAT
1 TAATTAT
60797789 AATGTTTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 17 0.71
23 7 0.29
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (22 bp):
TAATTATTTTATAATTTTTTAA
Found at i:60798139 original size:24 final size:22
Alignment explanation
Indices: 60798102--60798149 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
60798092 TAAAAATAAT
60798102 TTAATTTAAAATTTT-AAACATA
1 TTAATTTAAAATTTTCAAA-ATA
60798124 TTAATTTAAAATATTTTCAAAATA
1 TTAATTT-AAA-ATTTTCAAAATA
60798148 TT
1 TT
60798150 GAGAATGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 7 0.30
23 3 0.13
24 10 0.43
25 3 0.13
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TTAATTTAAAATTTTCAAAATA
Found at i:60801551 original size:40 final size:40
Alignment explanation
Indices: 60801507--60801767 Score: 378
Period size: 40 Copynumber: 6.7 Consensus size: 40
60801497 GCTACTTGCT
*
60801507 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60801547 CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60801587 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60801627 CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60801667 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
60801707 CAAATG-CTT----A---AGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
60801739 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
60801768 CATCCGAATA
Statistics
Matches: 200, Mismatches: 11, Indels: 20
0.87 0.05 0.09
Matches are distributed among these distances:
31 1 0.00
32 23 0.12
33 3 0.01
35 1 0.00
37 1 0.00
39 3 0.01
40 167 0.83
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:60801740 original size:32 final size:32
Alignment explanation
Indices: 60801685--60801745 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
60801675 TTCGGGACTT
*
60801685 AGCCCGGATATAGTAACTCGCACAAATGCTTA
1 AGCCCGGATATAGTAACTAGCACAAATGCTTA
*
60801717 AGCCCGGA-ATTAGTCACTAGCACAAATGC
1 AGCCCGGATA-TAGTAACTAGCACAAATGC
60801746 CTTCGGGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (32 bp):
AGCCCGGATATAGTAACTAGCACAAATGCTTA
Found at i:60806629 original size:7 final size:7
Alignment explanation
Indices: 60806617--60806657 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
60806607 ATACCACCAT
60806617 ATATGTG
1 ATATGTG
60806624 ATATGTG
1 ATATGTG
60806631 ATATGTG
1 ATATGTG
60806638 ATATGTG
1 ATATGTG
*
60806645 ACATGTG
1 ATATGTG
*
60806652 AGATGT
1 ATATGT
60806658 AATGTTGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.29, C:0.02, G:0.29, T:0.39
Consensus pattern (7 bp):
ATATGTG
Found at i:60809116 original size:7 final size:7
Alignment explanation
Indices: 60809106--60809131 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
60809096 AGAAGAGAAT
60809106 GATGAGG
1 GATGAGG
60809113 GATGAGG
1 GATGAGG
60809120 GATGAGG
1 GATGAGG
60809127 GATGA
1 GATGA
60809132 TATGAGGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.54, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:60819249 original size:40 final size:41
Alignment explanation
Indices: 60819201--60819379 Score: 251
Period size: 40 Copynumber: 4.5 Consensus size: 41
60819191 ATGTCCGGAC
* * *
60819201 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAATCCGGGT
60819241 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAATCCGGGT
60819281 TAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAATCCGGGT
* *
60819321 TAAGTCCCGAAGGCATTTTTGC-GAGTTACTATAA-CCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTGAGTTACTA-AATCCGGGT
* *
60819361 TATGTCCTGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
60819380 AATGAGTAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
40 118 0.93
41 9 0.07
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAATCCGGGT
Found at i:60819386 original size:80 final size:80
Alignment explanation
Indices: 60819231--60819402 Score: 242
Period size: 80 Copynumber: 2.2 Consensus size: 80
60819221 CTAAGTGACC
*
60819231 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCA
1 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCA
**
60819296 TTTGTGTGAGTTA-CT
66 TTTGAATGAG-TAGCT
* * *
60819311 AAATCCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAA-CCGGGCTATGTCCTGAAGGC
1 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGC
60819375 ATTTGAATGAGTAGCT
65 ATTTGAATGAGTAGCT
*
60819391 ATATCC-GGTTAA
1 AAATCCGGGTTAA
60819403 ATTCTGAAGG
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
79 8 0.10
80 73 0.88
81 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (80 bp):
AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCA
TTTGAATGAGTAGCT
Found at i:60827539 original size:47 final size:47
Alignment explanation
Indices: 60827417--60827628 Score: 280
Period size: 47 Copynumber: 4.7 Consensus size: 47
60827407 GTTATACGTG
* * *
60827417 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
60827464 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
**
60827512 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-CCA-TG------
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
60827550 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
60827597 TAACGTAGTGCTAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
60827629 AAAATGTAAC
Statistics
Matches: 143, Mismatches: 12, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
38 31 0.22
39 1 0.01
40 1 0.01
41 2 0.01
44 2 0.01
45 1 0.01
46 1 0.01
47 61 0.43
48 43 0.30
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
Found at i:60827563 original size:38 final size:38
Alignment explanation
Indices: 60827512--60827666 Score: 166
Period size: 38 Copynumber: 3.8 Consensus size: 38
60827502 ATTGATTCAT
**
60827512 TAACGTGGTGCTAAGTGGATATACCACGGTTAACCATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAAAATG
* *
60827550 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-A-A---A-T--G
*
60827597 TAACGTAGTGCTAAGTGGATATACCACGGTTAAAAATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAAAATG
* *
60827635 TAACATGGTGCTAAGTGGATATGCCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
60827667 TATATGTTAA
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 60 0.61
39 1 0.01
40 1 0.01
41 1 0.01
44 2 0.02
45 2 0.02
46 1 0.01
47 30 0.31
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAAAATG
Found at i:60827571 original size:85 final size:85
Alignment explanation
Indices: 60827460--60827671 Score: 379
Period size: 85 Copynumber: 2.5 Consensus size: 85
60827450 ACATATTGAT
*
60827460 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
60827525 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
60827545 CCATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
60827610 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
* * *
60827630 AAATGTAACATGGTGCTAAGTGGATATGCCACGGTTATATAT
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATAT
60827672 GTTAATTTGA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 121 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
AGTGGATATACCACGGTTAA
Found at i:60830946 original size:15 final size:15
Alignment explanation
Indices: 60830926--60830966 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
60830916 CTATAAATGA
60830926 GATTTCCTTATCATG
1 GATTTCCTTATCATG
* * *
60830941 GATTTCTTTACCTTG
1 GATTTCCTTATCATG
60830956 GATTTCCTTAT
1 GATTTCCTTAT
60830967 TCTGGGCTTC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51
Consensus pattern (15 bp):
GATTTCCTTATCATG
Found at i:60833321 original size:48 final size:48
Alignment explanation
Indices: 60833245--60833459 Score: 238
Period size: 47 Copynumber: 4.7 Consensus size: 48
60833235 TACCATGGTT
* * *
60833245 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTGCACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
*
60833293 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
* *
60833341 ATTCAT-TAACGTGGTGCTAAGTGGATATACCAC---T--GT-TA---
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
* ** *
60833379 A-ACATGTAATGTGGTGCTAAGTGGATATGTCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
* *
60833426 ATTCA-CTAACGTGGTGCTAAGTGGATATACCACG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACG
60833460 GTTAAAAATG
Statistics
Matches: 139, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
37 3 0.02
38 25 0.18
41 3 0.02
42 1 0.01
43 1 0.01
44 3 0.02
47 52 0.37
48 51 0.37
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTG
Found at i:60833400 original size:85 final size:85
Alignment explanation
Indices: 60833295--60833496 Score: 350
Period size: 85 Copynumber: 2.4 Consensus size: 85
60833285 ACATATTGAT
*
60833295 ACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCACTAACGTGGTGCTA
*
60833360 AGTGGATATACCACTGTTAA
66 AGTGGATATACCACGGTTAA
* * *
60833380 ACATGTAATGTGGTGCTAAGTGGATATGTCACGGTTACATATATTGATTCACTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCACTAACGTGGTGCTA
60833445 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
60833465 AAATGTAACGTGGTGCTAAGTGGATATGCCAC
1 ACATGTAACGTGGTGCTAAGTGGATATGCCAC
60833497 AGTTGTACAT
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 109 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCACTAACGTGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:60833402 original size:38 final size:38
Alignment explanation
Indices: 60833347--60833496 Score: 156
Period size: 38 Copynumber: 3.7 Consensus size: 38
60833337 ATTGATTCAT
* *
60833347 TAACGTGGTGCTAAGTGGATATACCACTGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAAAATG
* ** *
60833385 TAATGTGGTGCTAAGTGGATATGTCACGGTTACATATATTGATTCAC
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-A-A---A-T--G
60833432 TAACGTGGTGCTAAGTGGATATACCACGGTTAAAAATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAAAATG
*
60833470 TAACGTGGTGCTAAGTGGATATGCCAC
1 TAACGTGGTGCTAAGTGGATATACCAC
60833497 AGTTGTACAT
Statistics
Matches: 92, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
38 54 0.59
39 1 0.01
40 2 0.02
41 1 0.01
44 2 0.02
45 2 0.02
46 1 0.01
47 29 0.32
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAAAATG
Found at i:60834124 original size:21 final size:21
Alignment explanation
Indices: 60834098--60834137 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
60834088 GGACTAAACT
*
60834098 GAAAACTTTGAAAAGTTTCAG
1 GAAAACTTAGAAAAGTTTCAG
*
60834119 GAAAACTTAGAAAATTTTC
1 GAAAACTTAGAAAAGTTTC
60834138 CCATGAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (21 bp):
GAAAACTTAGAAAAGTTTCAG
Found at i:60836204 original size:48 final size:50
Alignment explanation
Indices: 60836094--60836267 Score: 157
Period size: 50 Copynumber: 3.6 Consensus size: 50
60836084 AATACCGATG
* ** * **
60836094 CCATGTCCCAGACATGGTCTTACACTGGCTCATC-C--A-TCAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACT-ATCACAAATTCGGGCCGACA
60836141 CCATGTCCCAGACATGG-CTTACACTGACTATCA-AAATT-GAGGCCGACA
1 CCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCG-GGCCGACA
* * * **
60836189 CCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATTCGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATTCGGGCCGACA
*
60836239 CCATGTCCCAAACATGGTCTTACACTGAC
1 CCATGTCCCAGACATGGTCTTACACTGAC
60836268 ACATCTCGTA
Statistics
Matches: 105, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
45 3 0.03
46 11 0.10
47 18 0.17
48 23 0.22
49 13 0.12
50 35 0.33
51 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCGGGCCGACA
Found at i:60836254 original size:50 final size:48
Alignment explanation
Indices: 60836088--60836400 Score: 203
Period size: 47 Copynumber: 6.6 Consensus size: 48
60836078 GGGTATAATA
*
60836088 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCA-AGT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTC-TCACAT-ATTGTG
* * *
60836136 -CGATGCCATGTCCCAGACATGG-CTTACACTGACTATCA-AAATTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG-CTCTCACATATTG-TG
**
60836183 CCGACACCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCACATATT-GTG
* * * *
60836233 CCGATGCCATGTCCCAAACATGGTCTTACACTG---ACACATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCACATATTGT-G
* * * * *
60836279 CCGATG-CATGTCCCAGACAT-ATCTTACGCTAGCTCTCGTC-TCAATAT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTC-ACAT-ATTGTG
* ** * *
60836326 -CAATGCCATGTCTTAGACATGATCTTACACTGGCTCT--CATAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCACATATTGT-G
60836373 CCGATG-CATGTCCCAGACAT-GTCTTACA
1 CCGATGCCATGTCCCAGACATGGTCTTACA
60836401 TTGGCACACA
Statistics
Matches: 208, Mismatches: 34, Indels: 48
0.72 0.12 0.17
Matches are distributed among these distances:
44 9 0.04
45 26 0.12
46 35 0.17
47 46 0.22
48 40 0.19
49 16 0.08
50 35 0.17
51 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCACATATTGTG
Found at i:60836289 original size:95 final size:93
Alignment explanation
Indices: 60836088--60836400 Score: 257
Period size: 95 Copynumber: 3.3 Consensus size: 93
60836078 GGGTATAATA
* *
60836088 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGA
1 CCGATG-CATGTCCCAGACATGGTCTTACACTAGCTC-TCCATCAAGTCGATGCCATGTCCCAAA
*
60836153 CATGGCTTACACTGACTATCAAAATTGAGG
64 CATGGCTTACACTGACTATCAAAATCGAGG
** *
60836183 CCGACACCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-ATTCGTGCCGATGCCATGTCC
1 CCGA-TGCATGTCCCAGACATGGTCTTACACTAGCTCTC-CATCA--AGT--CGATGCCATGTCC
**
60836247 CAAACATGGTCTTACACTGAC-A-C-ATCTCGTA-G
60 CAAACATGG-CTTACACTGACTATCAAAATCG-AGG
* * * * ** *
60836279 CCGATGCATGTCCCAGACAT-ATCTTACGCTAGCTCTCGTC-TCAATATCAATGCCATGTCTTAG
1 CCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTC--CATCAA-GTCGATGCCATGTCCCAA
* * * * *
60836342 ACATGATCTTACACTGGCTCTCATAAT-GTGG
63 ACATG-GCTTACACTGACTATCAAAATCGAGG
60836373 CCGATGCATGTCCCAGACAT-GTCTTACA
1 CCGATGCATGTCCCAGACATGGTCTTACA
60836401 TTGGCACACA
Statistics
Matches: 174, Mismatches: 28, Indels: 33
0.74 0.12 0.14
Matches are distributed among these distances:
92 27 0.16
94 49 0.28
95 53 0.30
96 10 0.06
97 2 0.01
98 22 0.13
99 11 0.06
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (93 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCCATCAAGTCGATGCCATGTCCCAAACA
TGGCTTACACTGACTATCAAAATCGAGG
Found at i:60839778 original size:211 final size:212
Alignment explanation
Indices: 60839408--60839826 Score: 714
Period size: 211 Copynumber: 2.0 Consensus size: 212
60839398 TTTACTCATC
*
60839408 CATGAAAATCACATCTTTGCATATAAATCAAAATGAATATTAGCCATCATTCAATGCTTAATACA
1 CATGAAAATCACATATTTGCATATAAATCAAAATGAATATTAGCCATCATTCAATGCTTAATACA
* *
60839473 AAATGAGGGATTTATCCCAAGCCAACACATTTGGCCAAATTAACAATAACACAAAACACAAGTCT
66 AAATAAGGCATTTATCCCAAGCCAACACATTTGGCCAAATTAACAATAACACAAAACACAAGTCT
*
60839538 AATTCCCTAAACATGCCATATTAAAAAATATAAATCAAACTATACCGAAAGCTTCGATTGATAGT
131 AATTCCCTAAACATGCCATATTAAAAAATATAAATCAAACTATACCAAAAGCTTCGATTGATAGT
60839603 ATGGTCAATATCTTTGA
196 ATGGTCAATATCTTTGA
*
60839620 CATGAAAATCACGTATTTGCATATAAATCAAAATGAATATTAGCCATCATTCAATGCTTAATAC-
1 CATGAAAATCACATATTTGCATATAAATCAAAATGAATATTAGCCATCATTCAATGCTTAATACA
* * * *
60839684 AAATAAGTCATTTATCCCAAGCCAACACATTTGGCCAAATTAATAATAACACGAAACACAAGTTT
66 AAATAAGGCATTTATCCCAAGCCAACACATTTGGCCAAATTAACAATAACACAAAACACAAGTCT
* *
60839749 AATTCCCTATACATGCCATATTCAAAAATATAAATCAAACTATACCAAAAGCTTCGATTGATAGT
131 AATTCCCTAAACATGCCATATTAAAAAATATAAATCAAACTATACCAAAAGCTTCGATTGATAGT
* *
60839814 GTGGTCGATATCT
196 ATGGTCAATATCT
60839827 CTAACTTTTG
Statistics
Matches: 194, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
211 132 0.68
212 62 0.32
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.28
Consensus pattern (212 bp):
CATGAAAATCACATATTTGCATATAAATCAAAATGAATATTAGCCATCATTCAATGCTTAATACA
AAATAAGGCATTTATCCCAAGCCAACACATTTGGCCAAATTAACAATAACACAAAACACAAGTCT
AATTCCCTAAACATGCCATATTAAAAAATATAAATCAAACTATACCAAAAGCTTCGATTGATAGT
ATGGTCAATATCTTTGA
Found at i:60840254 original size:44 final size:45
Alignment explanation
Indices: 60840203--60840296 Score: 120
Period size: 46 Copynumber: 2.1 Consensus size: 45
60840193 ATACTTGGTT
60840203 TTACACTGAC-ACATATCGTA-GCGGATGCATGTCCCAAACATGTC
1 TTACACTGACTACATATCG-AGGCGGATGCATGTCCCAAACATGTC
* * * *
60840247 TTACACTGACTTACGTCTCGAGGCTGATGCATGTCCCAGACATGTC
1 TTACACTGAC-TACATATCGAGGCGGATGCATGTCCCAAACATGTC
60840293 TTAC
1 TTAC
60840297 CGAACCATCG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
44 10 0.23
45 1 0.02
46 32 0.74
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (45 bp):
TTACACTGACTACATATCGAGGCGGATGCATGTCCCAAACATGTC
Found at i:60843661 original size:20 final size:20
Alignment explanation
Indices: 60843636--60843694 Score: 100
Period size: 20 Copynumber: 2.9 Consensus size: 20
60843626 TCTTAGTTAT
60843636 AGGGCACACGCCCGTGTGGA
1 AGGGCACACGCCCGTGTGGA
*
60843656 AGGGCACACGCCCGCGTGGA
1 AGGGCACACGCCCGTGTGGA
60843676 AGGGCAACACGCCCGTGTG
1 AGGGC-ACACGCCCGTGTG
60843695 TAATTAATTC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 24 0.67
21 12 0.33
ACGTcount: A:0.20, C:0.32, G:0.39, T:0.08
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:60844839 original size:46 final size:46
Alignment explanation
Indices: 60844743--60844997 Score: 222
Period size: 46 Copynumber: 5.5 Consensus size: 46
60844733 GTGCTAATGT
*
60844743 CATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTAGTG--GATG
1 CATGTCCCAGACAT-GTCTTACACTGACTTACGTCTCG-AG-GCCGATG
*
60844788 CATGTCCCAGACATGTCTTACATTGACTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACGTCTCGAGGCCGATG
* *
60844834 CATGTCCCAGACATGTCTTACACTGACTTACGTCTCAAGCCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACGTCTCGAGGCCGATG
* * * * * *
60844880 CATATCCCAGACATGTCTTCCAGTAGCAC-T-CGTCTCAATGACGATG
1 CATGTCCCAGACATGTCTTACACT-G-ACTTACGTCTCGAGGCCGATG
** * * *
60844926 CCATGTCCTTGACATGGTCTTACACTGGCTCTTA--TAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACT-G-ACTTACGT-CTCGAGGCCGATG
60844974 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
60844998 AGCTCACAAT
Statistics
Matches: 174, Mismatches: 25, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
44 13 0.07
45 16 0.09
46 98 0.56
47 25 0.14
48 20 0.11
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTTACGTCTCGAGGCCGATG
Found at i:60848234 original size:43 final size:43
Alignment explanation
Indices: 60848173--60848258 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
60848163 ATCACATGTA
* * ** *
60848173 TCGCATCCATTACGAACTCTGACCACTGAACGAGCTCGGATGC
1 TCGCATCCATAACGAACTCGGACCACCCAACGAGCTCAGATGC
*
60848216 TCGCATCCATAATGAACTCGGACCACCCAACGAGCTCAGATGC
1 TCGCATCCATAACGAACTCGGACCACCCAACGAGCTCAGATGC
60848259 CACATATATC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.28, C:0.34, G:0.20, T:0.19
Consensus pattern (43 bp):
TCGCATCCATAACGAACTCGGACCACCCAACGAGCTCAGATGC
Found at i:60859355 original size:21 final size:20
Alignment explanation
Indices: 60859316--60859355 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
60859306 TATGTATGAG
60859316 TTTTGATGATTGATGATAGA
1 TTTTGATGATTGATGATAGA
* *
60859336 TTTTGAATGGTTGTTGATAG
1 TTTTG-ATGATTGATGATAG
60859356 TTAAACAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (20 bp):
TTTTGATGATTGATGATAGA
Found at i:60869098 original size:40 final size:40
Alignment explanation
Indices: 60869014--60869089 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
60869004 TATATATATA
*
60869014 TAGCCGAAGCTATCACAAATCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCACAAACCGCACACCAAGTGCCACATT
* ** *
60869054 TAGCCTAAGCTATTTCAAACCGCACACTAAGTGCCA
1 TAGCCGAAGCTATCACAAACCGCACACCAAGTGCCA
60869090 TTCTTAGCCG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.34, C:0.32, G:0.14, T:0.20
Consensus pattern (40 bp):
TAGCCGAAGCTATCACAAACCGCACACCAAGTGCCACATT
Found at i:60873289 original size:42 final size:42
Alignment explanation
Indices: 60873071--60873296 Score: 182
Period size: 42 Copynumber: 5.2 Consensus size: 42
60873061 GTCCAACTAC
* * * * *
60873071 GGTCTTACACGAAGTCTCACATCGATGCCATGTCCTATACAT
1 GGTCTTACACGAAATCTCATATCGATGCCATATCCCAGACAT
* * * ** *
60873113 GGTCTCATACGAAATCACATATCGATGCCGCATCCCAGACAC
1 GGTCTTACACGAAATCTCATATCGATGCCATATCCCAGACAT
* * * * * * *
60873155 GGTCTTATACGAAATCTTATACCGAAGCTATATCCTAGATAT
1 GGTCTTACACGAAATCTCATATCGATGCCATATCCCAGACAT
* * *
60873197 AGTCTTACACGTAATCTCATATCGATGCTGATGCCATATCCCAGATAT
1 GGTCTTACACGAAATCTC--AT--AT-C-GATGCCATATCCCAGACAT
** *
60873245 GGTCTTACACGGGATCTCATATCGATGCCATGTCCCAGACAT
1 GGTCTTACACGAAATCTCATATCGATGCCATATCCCAGACAT
60873287 GGTCTTACAC
1 GGTCTTACAC
60873297 ATATCACAAT
Statistics
Matches: 143, Mismatches: 35, Indels: 12
0.75 0.18 0.06
Matches are distributed among these distances:
42 103 0.72
43 1 0.01
44 4 0.03
46 3 0.02
47 1 0.01
48 31 0.22
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (42 bp):
GGTCTTACACGAAATCTCATATCGATGCCATATCCCAGACAT
Found at i:60876049 original size:28 final size:28
Alignment explanation
Indices: 60876004--60876078 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
60875994 ATCTTCGCTG
* * *
60876004 TCTCGCAAACTAACTGCC-TTACTTAATA
1 TCTCGCACACTAAGTGCCATT-CTCAATA
*
60876032 TCTCGCACACCAAGTGCCATTCTCAATA
1 TCTCGCACACTAAGTGCCATTCTCAATA
* *
60876060 TTTCACACACTAAGTGCCA
1 TCTCGCACACTAAGTGCCA
60876079 CACACACACA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.31, C:0.32, G:0.09, T:0.28
Consensus pattern (28 bp):
TCTCGCACACTAAGTGCCATTCTCAATA
Found at i:60876082 original size:2 final size:2
Alignment explanation
Indices: 60876077--60876116 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
60876067 CACTAAGTGC
60876077 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
60876117 TATATATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:60883642 original size:27 final size:27
Alignment explanation
Indices: 60883608--60883807 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
60883598 TGGATAAGTT
60883608 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
60883635 GTAGAATTACCAAAATACCCCTAT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
** *
60883661 GATAGAATTATTGAAATACCCCTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTAAG
60883689 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * *
60883716 ATAGAATTATCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * *
60883743 ATAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * **
60883770 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
60883797 GTAAAATTACC
1 GTAGAATTACC
60883808 ATTTTGCCCC
Statistics
Matches: 148, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 143 0.97
28 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:60883805 original size:81 final size:81
Alignment explanation
Indices: 60883608--60883808 Score: 276
Period size: 81 Copynumber: 2.5 Consensus size: 81
60883598 TGGATAAGTT
* **
60883608 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTATAGGATAGAATTATT
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTATAAGATAGAATTACC
*
60883673 GAAATACCCCTGTAGG
66 AAAATACCCCTGTAGG
* * * * *
60883689 GTAGAATTACCGAAATACCCCTGTAAGATAGAATTATCGAAATACCCTTGTAAGATAGAATTACC
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTATAAGATAGAATTACC
60883754 AAAATACCCCTGTAGG
66 AAAATACCCCTGTAGG
* * ** *
60883770 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCA
60883809 TTTTGCCCCT
Statistics
Matches: 103, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 103 1.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTATAAGATAGAATTACC
AAAATACCCCTGTAGG
Found at i:60883818 original size:54 final size:54
Alignment explanation
Indices: 60883609--60883808 Score: 265
Period size: 54 Copynumber: 3.7 Consensus size: 54
60883599 GGATAAGTTG
*
60883609 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTATAGGA
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGA
** * * *
60883663 TAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGA
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGA
* * * *
60883717 TAGAATTATCGAAATACCCTTGTAAGATAGAATTACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGA
* * ** *
60883771 TAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCA
60883809 TTTTGCCCCT
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 127 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGA
Found at i:60884504 original size:27 final size:26
Alignment explanation
Indices: 60884460--60884511 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884450 CTCGCTGCAA
*
60884460 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60884487 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60884512 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60884549 original size:67 final size:67
Alignment explanation
Indices: 60884441--60885286 Score: 1683
Period size: 67 Copynumber: 12.6 Consensus size: 67
60884431 GAGGAAGCGT
60884441 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60884506 TA
66 TA
60884508 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60884573 TA
66 TA
60884575 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60884640 TA
66 TA
60884642 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60884707 TA
66 TA
60884709 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60884774 TA
66 TA
60884776 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60884841 TA
66 TA
60884843 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60884908 TA
66 TA
60884910 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60884975 TA
66 TA
60884977 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60885042 TA
66 TA
60885044 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60885109 TA
66 TA
60885111 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60885176 TA
66 TA
60885178 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60885243 TA
66 TA
*
60885245 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATAT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATAT
60885287 ATCTATTCTG
Statistics
Matches: 778, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 778 1.00
ACGTcount: A:0.18, C:0.30, G:0.22, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:60884571 original size:27 final size:26
Alignment explanation
Indices: 60884527--60884578 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884517 CTCGCTGCAA
*
60884527 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60884554 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60884579 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60884638 original size:27 final size:26
Alignment explanation
Indices: 60884594--60884645 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884584 CTCGCTGCAA
*
60884594 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60884621 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60884646 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60884705 original size:27 final size:26
Alignment explanation
Indices: 60884661--60884712 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884651 CTCGCTGCAA
*
60884661 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60884688 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60884713 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60884772 original size:27 final size:26
Alignment explanation
Indices: 60884728--60884779 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884718 CTCGCTGCAA
*
60884728 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60884755 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60884780 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60884839 original size:27 final size:26
Alignment explanation
Indices: 60884795--60884846 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884785 CTCGCTGCAA
*
60884795 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60884822 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60884847 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60884906 original size:27 final size:26
Alignment explanation
Indices: 60884862--60884913 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884852 CTCGCTGCAA
*
60884862 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60884889 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60884914 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60884973 original size:27 final size:26
Alignment explanation
Indices: 60884929--60884980 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884919 CTCGCTGCAA
*
60884929 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60884956 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60884981 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60885040 original size:27 final size:26
Alignment explanation
Indices: 60884996--60885047 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60884986 CTCGCTGCAA
*
60884996 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60885023 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60885048 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60885107 original size:27 final size:26
Alignment explanation
Indices: 60885063--60885114 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60885053 CTCGCTGCAA
*
60885063 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60885090 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60885115 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Done.