Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 185 of 276
Found at i:60885174 original size:27 final size:26
Alignment explanation
Indices: 60885130--60885181 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60885120 CTCGCTGCAA
*
60885130 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60885157 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60885182 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60885241 original size:27 final size:26
Alignment explanation
Indices: 60885197--60885248 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60885187 CTCGCTGCAA
*
60885197 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60885224 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60885249 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60891125 original size:27 final size:27
Alignment explanation
Indices: 60891087--60891532 Score: 829
Period size: 27 Copynumber: 16.5 Consensus size: 27
60891077 AAGTGGATAA
60891087 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891114 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891141 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891168 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891195 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891222 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891249 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891276 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891303 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891330 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891357 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891384 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
60891411 AGGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
* *
60891438 AGGATAGAATTACCGAAATACCCTTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
*
60891465 AAGGTAGAATTACCGAAATACCCCTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
* *
60891492 AGGGTAGAATTACCGAGATACCCTTGT
1 AGGGTAGAATTACCGAAATACCCCTGT
* *
60891519 GGGGTAAAATTACC
1 AGGGTAGAATTACC
60891533 ATTTTGCCCC
Statistics
Matches: 409, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 409 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.23
Consensus pattern (27 bp):
AGGGTAGAATTACCGAAATACCCCTGT
Found at i:60892229 original size:27 final size:26
Alignment explanation
Indices: 60892185--60892236 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892175 CTCGCTGCAA
*
60892185 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892212 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892237 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892274 original size:67 final size:67
Alignment explanation
Indices: 60892166--60893011 Score: 1683
Period size: 67 Copynumber: 12.6 Consensus size: 67
60892156 GAGGAAGCGT
60892166 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892231 TA
66 TA
60892233 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892298 TA
66 TA
60892300 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892365 TA
66 TA
60892367 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892432 TA
66 TA
60892434 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892499 TA
66 TA
60892501 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892566 TA
66 TA
60892568 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892633 TA
66 TA
60892635 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892700 TA
66 TA
60892702 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892767 TA
66 TA
60892769 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892834 TA
66 TA
60892836 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892901 TA
66 TA
60892903 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
60892968 TA
66 TA
*
60892970 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATAT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATAT
60893012 ATATCTGTTC
Statistics
Matches: 778, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 778 1.00
ACGTcount: A:0.18, C:0.30, G:0.22, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:60892296 original size:27 final size:26
Alignment explanation
Indices: 60892252--60892303 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892242 CTCGCTGCAA
*
60892252 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892279 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892304 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892363 original size:27 final size:26
Alignment explanation
Indices: 60892319--60892370 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892309 CTCGCTGCAA
*
60892319 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892346 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892371 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892430 original size:27 final size:26
Alignment explanation
Indices: 60892386--60892437 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892376 CTCGCTGCAA
*
60892386 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892413 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892438 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892497 original size:27 final size:26
Alignment explanation
Indices: 60892453--60892504 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892443 CTCGCTGCAA
*
60892453 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892480 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892505 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892564 original size:27 final size:26
Alignment explanation
Indices: 60892520--60892571 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892510 CTCGCTGCAA
*
60892520 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892547 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892572 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892631 original size:27 final size:26
Alignment explanation
Indices: 60892587--60892638 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892577 CTCGCTGCAA
*
60892587 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892614 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892639 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892698 original size:27 final size:26
Alignment explanation
Indices: 60892654--60892705 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892644 CTCGCTGCAA
*
60892654 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892681 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892706 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892765 original size:27 final size:26
Alignment explanation
Indices: 60892721--60892772 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892711 CTCGCTGCAA
*
60892721 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892748 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892773 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892832 original size:27 final size:26
Alignment explanation
Indices: 60892788--60892839 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892778 CTCGCTGCAA
*
60892788 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892815 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892840 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892899 original size:27 final size:26
Alignment explanation
Indices: 60892855--60892906 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892845 CTCGCTGCAA
*
60892855 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892882 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892907 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60892966 original size:27 final size:26
Alignment explanation
Indices: 60892922--60892973 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60892912 CTCGCTGCAA
*
60892922 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60892949 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60892974 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60897412 original size:39 final size:39
Alignment explanation
Indices: 60897358--60897526 Score: 252
Period size: 39 Copynumber: 4.3 Consensus size: 39
60897348 TAATGGAGAA
60897358 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
60897397 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
60897436 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
60897475 TTATATCCGGGATAAAGTCCC-ATAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGA-AGGCATTCGTGCTGGTG
*
60897514 TTATATTCGGGCT
1 TTATATCCGGGCT
60897527 TAAAGTTCTG
Statistics
Matches: 119, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 109 0.92
40 10 0.08
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:60902824 original size:306 final size:306
Alignment explanation
Indices: 60902271--60903188 Score: 1809
Period size: 306 Copynumber: 3.0 Consensus size: 306
60902261 CTTCTAAGTT
60902271 AAATTTTTTAGATAATTATGTTTATTTTCTTTGAATTAAGAGTTAATTTTTAATTTAATGTATTA
1 AAATTTTTTAGATAATTATGTTTATTTTCTTTGAATTAAGAGTTAATTTTTAATTTAATGTATTA
60902336 TTTATTTATTTTATTATTTTCCCCATGTAATTATCTTATTGGGTTATCTAAGTAATAAATTACAT
66 TTTATTTATTTTATTATTTTCCCCATGTAATTATCTTATTGGGTTATCTAAGTAATAAATTACAT
*
60902401 CTCATTAAAAATATTCTACATATGAAATTCCACATCATCCCCATTAACTTTTTTAATGGCACTTT
131 CTCATTAAAAATATTCCACATATGAAATTCCACATCATCCCCATTAACTTTTTTAATGGCACTTT
60902466 CATTAAATCTGCTAGAAAAAGTAGATTGAAAAAAAGAACAAAGGTTGATAGCTAAAAAACGCTAA
196 CATTAAATCTGCTAGAAAAAGTAGATTGAAAAAAAGAACAAAGGTTGATAGCTAAAAAACGCTAA
60902531 AAAATACAATTAGGGCCATTTTGACAAAATATGCAAACATTAGTGA
261 AAAATACAATTAGGGCCATTTTGACAAAATATGCAAACATTAGTGA
60902577 AAATTTTTTAGATAATTATGTTTATTTTCTTTGAATTAAGAGTTAATTTTTAATTTAATGTATTA
1 AAATTTTTTAGATAATTATGTTTATTTTCTTTGAATTAAGAGTTAATTTTTAATTTAATGTATTA
60902642 TTTATTTATTTTATTATTTTCCCCATGTAATTATCTTATTGGGTTATCTAAGTAATAAATTACAT
66 TTTATTTATTTTATTATTTTCCCCATGTAATTATCTTATTGGGTTATCTAAGTAATAAATTACAT
60902707 CTCATTAAAAATATTCCACATATGAAATTCCACATCATCCCCATTAACTTTTTTAATGGCACTTT
131 CTCATTAAAAATATTCCACATATGAAATTCCACATCATCCCCATTAACTTTTTTAATGGCACTTT
60902772 CATTAAATCTGCTAGAAAAAGTAGATTGAAAAAAAGAACAAAGGTTGATAGCTAAAAAACGCTAA
196 CATTAAATCTGCTAGAAAAAGTAGATTGAAAAAAAGAACAAAGGTTGATAGCTAAAAAACGCTAA
60902837 AAAATACAATTAGGGCCATTTTGACAAAATATGCAAACATTAGTGA
261 AAAATACAATTAGGGCCATTTTGACAAAATATGCAAACATTAGTGA
60902883 AAATTTTTTAGATAATTATGTTTATTTTCTTTGAATTAAGAGTTAATTTTTAATTTAATGTATTA
1 AAATTTTTTAGATAATTATGTTTATTTTCTTTGAATTAAGAGTTAATTTTTAATTTAATGTATTA
60902948 TTTATTTATTTTATTATTTTCCCCATGTAATTATCTTATTGGGTTATCTAAGTAATAAATTACAT
66 TTTATTTATTTTATTATTTTCCCCATGTAATTATCTTATTGGGTTATCTAAGTAATAAATTACAT
60903013 CTCATTAAAAATATTCCACATATGAAATTCCACATCATCCCCATTAACTTTTTTAATGGCACTTT
131 CTCATTAAAAATATTCCACATATGAAATTCCACATCATCCCCATTAACTTTTTTAATGGCACTTT
*
60903078 CATTAAATCTGCTAGAAAAAGTAGATTGAAAAAAAGAACAAAGGTTGATAGCTAAAAAACGTTAA
196 CATTAAATCTGCTAGAAAAAGTAGATTGAAAAAAAGAACAAAGGTTGATAGCTAAAAAACGCTAA
*
60903143 AAAATCCAATTAGGGCCATTTTGACAAAATATGCAAACATTAGTGA
261 AAAATACAATTAGGGCCATTTTGACAAAATATGCAAACATTAGTGA
60903189 TCAAATTTGC
Statistics
Matches: 609, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
306 609 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (306 bp):
AAATTTTTTAGATAATTATGTTTATTTTCTTTGAATTAAGAGTTAATTTTTAATTTAATGTATTA
TTTATTTATTTTATTATTTTCCCCATGTAATTATCTTATTGGGTTATCTAAGTAATAAATTACAT
CTCATTAAAAATATTCCACATATGAAATTCCACATCATCCCCATTAACTTTTTTAATGGCACTTT
CATTAAATCTGCTAGAAAAAGTAGATTGAAAAAAAGAACAAAGGTTGATAGCTAAAAAACGCTAA
AAAATACAATTAGGGCCATTTTGACAAAATATGCAAACATTAGTGA
Found at i:60903254 original size:23 final size:22
Alignment explanation
Indices: 60903226--60903286 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
60903216 AAATAATATT
60903226 ATATTAGGCATGCTTTTAAATA
1 ATATTAGGCATGCTTTTAAATA
* * * *
60903248 ATTATTATGCAT-ATTTTAACTT
1 A-TATTAGGCATGCTTTTAAATA
*
60903270 ATATTAGGTATGCTTTT
1 ATATTAGGCATGCTTTT
60903287 TTTTAAATTT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 8 0.27
22 13 0.43
23 9 0.30
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.49
Consensus pattern (22 bp):
ATATTAGGCATGCTTTTAAATA
Found at i:60904868 original size:31 final size:31
Alignment explanation
Indices: 60904830--60904908 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
60904820 TTTAATGGTT
60904830 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
* *
60904861 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
60904892 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
60904909 ATTATAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:60904992 original size:42 final size:42
Alignment explanation
Indices: 60904932--60905023 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
60904922 TGGCCTATAG
* *
60904932 GCCCATTTCAATAACACATGAAATATCAATGAATGTTTGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
* *
60904974 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAG
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
60905016 GCCCATTT
1 GCCCATTT
60905024 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:60905239 original size:26 final size:26
Alignment explanation
Indices: 60905168--60905342 Score: 246
Period size: 26 Copynumber: 6.8 Consensus size: 26
60905158 CCTCTTTAAT
* **
60905168 AACTGGGGCA-AAGCCCTTCTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
60905193 AACTAGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
60905218 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
60905244 AACTGGGGCATAAGTCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
60905270 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
60905296 AACTGGGACATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
60905322 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
60905343 GCACTTCCTC
Statistics
Matches: 132, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 30 0.23
26 102 0.77
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:60905281 original size:52 final size:52
Alignment explanation
Indices: 60905168--60905342 Score: 300
Period size: 52 Copynumber: 3.4 Consensus size: 52
60905158 CCTCTTTAAT
* *
60905168 AACTGGGGCA-AAGCCCTTCTCGGTAAACTAGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
60905218 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGTCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
60905270 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGACATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
60905322 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
60905343 GCACTTCCTC
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 10 0.08
51 23 0.19
52 85 0.72
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:60905417 original size:20 final size:20
Alignment explanation
Indices: 60905392--60905466 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
60905382 TTATGAATTC
*
60905392 ATCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
60905412 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
60905432 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
60905452 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
60905467 TCCCACGTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:60905423 original size:11 final size:11
Alignment explanation
Indices: 60905392--60905447 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60905382 TTATGAATTC
60905392 ATCATGTGCAT
1 ATCATGTGCAT
* *
60905403 CTCA--TACAT
1 ATCATGTGCAT
60905412 ATCATGTGCAT
1 ATCATGTGCAT
*
60905423 ATCA--TACAT
1 ATCATGTGCAT
60905432 ATCATGTGCAT
1 ATCATGTGCAT
60905443 ATCAT
1 ATCAT
60905448 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:60905464 original size:9 final size:10
Alignment explanation
Indices: 60905409--60905465 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
60905399 GCATCTCATA
60905409 CATATCATGT
1 CATATCATGT
*
60905419 GCATATCAT-A
1 -CATATCATGT
60905429 CATATCATGT
1 CATATCATGT
*
60905439 GCATATCATAT
1 -CATATCATGT
60905450 CA-ATCATGT
1 CATATCATGT
60905459 -ATATCAT
1 CATATCAT
60905466 ATCCCACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:60906227 original size:27 final size:27
Alignment explanation
Indices: 60906165--60906229 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
60906155 CGGCATATTC
*
60906165 GTCATTTTACCGTACAAGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* *
60906192 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCCTACAAGGG-TATTACG
*
60906219 GTCTTTTTACC
1 GTCATTTTACC
60906230 TAATAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTACG
Found at i:60906231 original size:26 final size:26
Alignment explanation
Indices: 60906165--60906266 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 26
60906155 CGGCATATTC
60906165 GTCATTTTACCGTACAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTACG
* *
60906192 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAAGGG-TATTACG
* ***
60906219 GTCTTTTTACCTA-ATAGGGGTATTTTA
1 GTCATTTTACCTACA-A-GGGTATTACG
*
60906246 GTCATTTCATCCTACAAGGGT
1 GTCATTTTA-CCTACAAGGGT
60906267 GTTTTGGTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
25 1 0.02
26 5 0.09
27 43 0.74
28 8 0.14
29 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTACG
Found at i:60906313 original size:27 final size:27
Alignment explanation
Indices: 60906260--60906512 Score: 211
Period size: 27 Copynumber: 9.3 Consensus size: 27
60906250 TTTCATCCTA
* * * *
60906260 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
60906287 CAAAGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
60906314 CAATGGTATTTCT-ATAATTTTTATAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * * *
60906343 CAAGGGTATTTTTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
60906370 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
60906397 TAAGGGTATTTCGGTAATTTCATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
60906424 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
60906451 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
60906478 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
60906505 CGAGGGTA
1 CAAGGGTA
60906513 AAACAGTAAT
Statistics
Matches: 183, Mismatches: 39, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
27 153 0.84
28 17 0.09
29 13 0.07
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:60906511 original size:81 final size:81
Alignment explanation
Indices: 60906260--60906512 Score: 265
Period size: 81 Copynumber: 3.1 Consensus size: 81
60906250 TTTCATCCTA
* * * ** * ** *
60906260 CAAGGGTGTTTTGGTAAATCTACAAACCAAAGGTATTTTAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
60906325 CTA-TAATTTTTATAAAGT
66 -TAGTAA-TTTTATAAA-T
* * ** * **
60906343 CAAGGGTATTTTTGTAACTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTT
1 CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
** * *
60906408 CGGTAATTTCATAAAC
66 TAGTAATTTTATAAAT
*
60906424 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
*
60906489 TAGTAATTTTGTAAAT
66 TAGTAATTTTATAAAT
*
60906505 CGAGGGTA
1 CAAGGGTA
60906513 AAACAGTAAT
Statistics
Matches: 136, Mismatches: 33, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
81 76 0.56
82 8 0.06
83 52 0.38
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
TAGTAATTTTATAAAT
Found at i:60906520 original size:27 final size:27
Alignment explanation
Indices: 60906490--60906701 Score: 257
Period size: 27 Copynumber: 7.9 Consensus size: 27
60906480 AGGGTATTTT
*
60906490 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
60906517 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
60906544 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
60906571 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
60906598 -GATAATTCTGTAAGTCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
60906625 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
60906652 GGTAATTATGTAAATTGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
60906679 AGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
60906702 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 162 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:60906522 original size:54 final size:54
Alignment explanation
Indices: 60906464--60906685 Score: 178
Period size: 54 Copynumber: 4.1 Consensus size: 54
60906454 GGGTATTTTG
*** * *
60906464 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* * *
60906518 GTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTTTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
** * * * * *
60906572 GTAATTTTGTAAATCGAGGGTAAAA-CGATAATTCTGTAAGTCGAGGGTAAAAC-
1 GTAATTTTACAAACCAAGGGTAAAATAG-TAATTCTATAAATCGAGGGTAAAACA
* ** * ** * * * * *
60906625 GATAATTATGTAAATCGGGGGTAAAATGGTAATTATGTAAATTGGGGGTAAAACA
1 G-TAATTTTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
60906680 GTAATT
1 GTAATT
60906686 CTGTAAATCG
Statistics
Matches: 143, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
53 2 0.01
54 139 0.97
55 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
GTAATTTTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:60906539 original size:81 final size:81
Alignment explanation
Indices: 60906373--60906796 Score: 237
Period size: 81 Copynumber: 5.2 Consensus size: 81
60906363 TGTAAATTAG
* * ** * * *****
60906373 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCATAAACCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAG
* * *
60906438 TAATTTTACAAA-CTAG
66 TAATTCTATAAATC-AA
* *
60906454 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAG
60906519 TAATTCTATAAATCAA
66 TAATTCTATAAATCAA
*** * * * * ***
60906535 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAC-G
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAG
* * *
60906599 ATAATTCTGTAAGTCGA
66 -TAATTCTATAAATCAA
**** * * ** ** ** * * * *
60906616 GGGTAAAACGATAATTATGTAAATCGGGGGTAAAAT-GGTAATTATGTAAATTGGGGGTAAAACA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGT-ATTTCAGTAATTTTGTAAATCGAGGGTAAAACA
* **
60906680 GTAATTCTGTAAATCGG
65 GTAATTCTATAAATCAA
* * ** ***
60906697 GGGTACTTTGGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACA
* * *
60906761 GTACTTTTACAAA-CTAA
65 GTAATTCTATAAATC-AA
*
60906778 GGGTATTTCGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
60906797 GTAAACTAAA
Statistics
Matches: 262, Mismatches: 74, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
80 4 0.02
81 253 0.97
82 5 0.02
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.34
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAG
TAATTCTATAAATCAA
Found at i:60906728 original size:27 final size:27
Alignment explanation
Indices: 60906707--60906796 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
60906697 GGGTACTTTG
*
60906707 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
60906734 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
60906761 GTACTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
60906788 GTAATTTTA
1 GTAATTTTA
60906797 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:60906748 original size:54 final size:54
Alignment explanation
Indices: 60906690--60906796 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
60906680 GTAATTCTGT
* * *
60906690 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
60906744 AAATCGAGGGTATTTCAGTACTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
60906797 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:60906810 original size:27 final size:27
Alignment explanation
Indices: 60906707--60906811 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
60906697 GGGTACTTTG
* *
60906707 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
60906734 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
60906761 GTACTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
60906788 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
60906812 CTAAACAGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:60909521 original size:29 final size:28
Alignment explanation
Indices: 60909454--60909521 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 28
60909444 ACATGTGATT
*
60909454 ATTT-CATATATTTATAACATTTATATA
1 ATTTACATAAATTTATAACATTTATATA
* * * * *
60909481 ATTCAAACAAATTTTTAGCATTTCATATA
1 ATTTACATAAATTTATAACATTT-ATATA
60909510 ATTTACATAAAT
1 ATTTACATAAAT
60909522 ACATACTACA
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
27 3 0.10
28 13 0.43
29 14 0.47
ACGTcount: A:0.43, C:0.10, G:0.01, T:0.46
Consensus pattern (28 bp):
ATTTACATAAATTTATAACATTTATATA
Found at i:60922736 original size:42 final size:41
Alignment explanation
Indices: 60922684--60922820 Score: 123
Period size: 42 Copynumber: 3.3 Consensus size: 41
60922674 TGGCTTATTT
* *
60922684 GATGATGCACTTATGTGCTAGTATAATTGTTTTGGTATATCC
1 GATGATGCACTTATGTGCCAATATAATTGTTTTGGT-TATCC
** * ***
60922726 GATGATGCACTTACATGCCAATATAATTGCTTCAATTCATCC
1 GATGATGCACTTATGTGCCAATATAATTGTTTTGGTT-ATCC
* * * *
60922768 GATGATGCACTTATGTGCCAACATGATT-TCTTTGGCCTATTC
1 GATGATGCACTTATGTGCCAATATAATTGT-TTTGG-TTATCC
60922810 GATGATGCACT
1 GATGATGCACT
60922821 ATGCGTGCTA
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
41 1 0.01
42 72 0.97
43 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (41 bp):
GATGATGCACTTATGTGCCAATATAATTGTTTTGGTTATCC
Found at i:60922782 original size:84 final size:85
Alignment explanation
Indices: 60922684--60922889 Score: 227
Period size: 84 Copynumber: 2.4 Consensus size: 85
60922674 TGGCTTATTT
*
60922684 GATGATGCACTTATGTGCTAGTATAATTGT-TTTGGTATATCCGATGATGCACT-TACATGCCAA
1 GATGATGCACTTATGTGCTAGTATAATT-TCTTTGGCATATCCGATGATGCACTATACATGCCAA
*
60922747 TATAATTGCTTCAATTCATCC
65 TATAATTACTTCAATTCATCC
* ** * * * * * * *
60922768 GATGATGCACTTATGTGCCAACATGATTTCTTTGGCCTATTCGATGATGCACTATGCGTGCTAGT
1 GATGATGCACTTATGTGCTAGTATAATTTCTTTGGCATATCCGATGATGCACTATACATGCCAAT
* * **
60922833 ATAATTACTTCGATTCGTTT
66 ATAATTACTTCAATTCATCC
*
60922853 GATGATGCACGTTATGTGTTAGTATAATTTCTTTGGC
1 GATGATGCAC-TTATGTGCTAGTATAATTTCTTTGGC
60922890 TTGCCCAGTG
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
83 1 0.01
84 44 0.45
85 32 0.33
86 21 0.21
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.39
Consensus pattern (85 bp):
GATGATGCACTTATGTGCTAGTATAATTTCTTTGGCATATCCGATGATGCACTATACATGCCAAT
ATAATTACTTCAATTCATCC
Found at i:60924629 original size:40 final size:40
Alignment explanation
Indices: 60924568--60924819 Score: 301
Period size: 40 Copynumber: 6.3 Consensus size: 40
60924558 TTAGTGATGA
*
60924568 TTGTACTTTGGTACCCCTGAATGCACATACGTGCCCCTGT
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* *
60924608 TTATACTTCGGTACCCATGAATGCACATACGTGCCCCT-T
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* * *
60924647 TGTGTACTTCGGTACCCTTGAATGCACATACGTGCCCTTAT
1 T-TGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
** * *
60924688 TTGTACTTTAGTACCCCTGATTGCACATACGTGCCCTTGT
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* * * *
60924728 TTGTACTTCGCTATCCTTGAATGCACATACGTGTCCCTGT
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* * * *
60924768 TTGTACTTAGGTATCCCTGAATACACATATGTG-CCCTGT
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* *
60924807 TTATACTTTGGTA
1 TTGTACTTCGGTA
60924820 ACCTCGAATT
Statistics
Matches: 184, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
39 19 0.10
40 163 0.89
41 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.36
Consensus pattern (40 bp):
TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
Found at i:60924789 original size:120 final size:120
Alignment explanation
Indices: 60924568--60924804 Score: 343
Period size: 120 Copynumber: 2.0 Consensus size: 120
60924558 TTAGTGATGA
* *
60924568 TTGTACTTTGGTACCCCTGAATGCACATACGTGCCCCTGTTTATACTTCGGTACCCATGAATGCA
1 TTGTACTTTAGTACCCCTGAATGCACATACGTGCCCCTGTTTATACTTCGCTACCCATGAATGCA
* *
60924633 CATACGTGCCCCTTTGTGTACTTCGGTACCCTTGAATGCACATACGTGCCCTTAT
66 CATACGTGCCCCTTTGTGTACTTAGGTACCCTTGAATACACATACGTGCCCTTAT
* * * * *
60924688 TTGTACTTTAGTACCCCTGATTGCACATACGTGCCCTTGTTTGTACTTCGCTATCCTTGAATGCA
1 TTGTACTTTAGTACCCCTGAATGCACATACGTGCCCCTGTTTATACTTCGCTACCCATGAATGCA
* *
60924753 CATACGTGTCCCTGTT-TGTACTTAGGTATCCC-TGAATACACATATGTGCCCT
66 CATACGTGCCCCT-TTGTGTACTTAGGTA-CCCTTGAATACACATACGTGCCCT
60924805 GTTTATACTT
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
120 99 0.95
121 5 0.05
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.35
Consensus pattern (120 bp):
TTGTACTTTAGTACCCCTGAATGCACATACGTGCCCCTGTTTATACTTCGCTACCCATGAATGCA
CATACGTGCCCCTTTGTGTACTTAGGTACCCTTGAATACACATACGTGCCCTTAT
Found at i:60928530 original size:39 final size:39
Alignment explanation
Indices: 60928486--60928839 Score: 681
Period size: 39 Copynumber: 9.1 Consensus size: 39
60928476 ATTATATTAT
* *
60928486 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60928525 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
60928564 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60928603 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60928642 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60928681 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60928720 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60928759 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60928798 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60928837 CAG
1 CAG
60928840 TGTCTTGCAT
Statistics
Matches: 311, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 311 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.20
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:60934489 original size:39 final size:39
Alignment explanation
Indices: 60934445--60934681 Score: 429
Period size: 39 Copynumber: 6.1 Consensus size: 39
60934435 ATTATATTAT
* *
60934445 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
60934484 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
60934523 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
60934562 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60934601 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60934640 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60934679 CAG
1 CAG
60934682 TGTCTTGCAT
Statistics
Matches: 190, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 190 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:60940331 original size:39 final size:39
Alignment explanation
Indices: 60940287--60940558 Score: 517
Period size: 39 Copynumber: 7.0 Consensus size: 39
60940277 ATTATATTAT
* *
60940287 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
60940326 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60940365 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60940404 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60940443 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60940482 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
60940521 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
60940559 TCAGTGTCTT
Statistics
Matches: 229, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 229 1.00
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:60943220 original size:50 final size:50
Alignment explanation
Indices: 60943164--60943285 Score: 208
Period size: 50 Copynumber: 2.4 Consensus size: 50
60943154 AGATGTGTTA
60943164 GTGTAAGACCATGTCTGGGACACAGCATCGGCACAGATATGCTAGAGCTT
1 GTGTAAGACCATGTCTGGGACACAGCATCGGCACAGATATGCTAGAGCTT
* * * *
60943214 GTGTAAGACCATGTCTGGGATAGAGTATCGGCATAGATATGCTAGAGCTT
1 GTGTAAGACCATGTCTGGGACACAGCATCGGCACAGATATGCTAGAGCTT
60943264 GTGTAAGACCATGTCTGGGACA
1 GTGTAAGACCATGTCTGGGACA
60943286 TGGCATCGAC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGGACACAGCATCGGCACAGATATGCTAGAGCTT
Found at i:60950862 original size:44 final size:43
Alignment explanation
Indices: 60950760--60950919 Score: 126
Period size: 46 Copynumber: 3.5 Consensus size: 43
60950750 GTCGATGTTG
* * * *
60950760 TGTCCCAGACAGGTCTTACACTGACACATGTAACTGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTG-CACATCT--C-GTAGCCGATGCA
*
60950806 TGTCCCAAACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
1 TGTCCCAGACATGTCTTACACT-GCACATCTCGTAGCCGATGCA
* *
60950850 TGTCCCAGACATGTCTGACATTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACT-GC-A-CATCTCGTA-GCCGATGCA
* * *
60950896 TATCCCATACATGGTTTTACACTG
1 TGTCCCAGACAT-GTCTTACACTG
60950920 GCATACAAAT
Statistics
Matches: 94, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
43 2 0.02
44 29 0.31
45 2 0.02
46 53 0.56
47 8 0.09
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (43 bp):
TGTCCCAGACATGTCTTACACTGCACATCTCGTAGCCGATGCA
Found at i:60953586 original size:68 final size:68
Alignment explanation
Indices: 60953477--60953611 Score: 261
Period size: 68 Copynumber: 2.0 Consensus size: 68
60953467 TCAACTCAAC
*
60953477 GAGCTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAACATTCGTAT
1 GAGCTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
60953542 CCA
66 CCA
60953545 GAGCTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 GAGCTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
60953610 CC
66 CC
60953612 CTAAGTGAAC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.23
Consensus pattern (68 bp):
GAGCTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
CCA
Found at i:60953925 original size:156 final size:156
Alignment explanation
Indices: 60953641--60953952 Score: 606
Period size: 156 Copynumber: 2.0 Consensus size: 156
60953631 ACTCAACAAG
60953641 TTCAGATGCTCAACCATCCTAGTGACATGTCACTTGTATCCTAATCTATTCCTAAGGTTCAAACG
1 TTCAGATGCTCAACCATCCTAGTGACATGTCACTTGTATCCTAATCTATTCCTAAGGTTCAAACG
*
60953706 GGATTTTCCTCGAACACATATCCTTGCCATCTTCCGTAAAATACCGAAACCAATACTCGGTAGCA
66 GGATTTTCATCGAACACATATCCTTGCCATCTTCCGTAAAATACCGAAACCAATACTCGGTAGCA
60953771 CTTTATATTTAACAGATAATACACAT
131 CTTTATATTTAACAGATAATACACAT
*
60953797 TTCAGATGCTCAACCATCCTAGTGACATGTCACTTGTATCCTAATCTATTCCTAAGGTTCAAATG
1 TTCAGATGCTCAACCATCCTAGTGACATGTCACTTGTATCCTAATCTATTCCTAAGGTTCAAACG
60953862 GGATTTTCATCGAACACATATCCTTGCCATCTTCCGTAAAATACCGAAACCAATACTCGGTAGCA
66 GGATTTTCATCGAACACATATCCTTGCCATCTTCCGTAAAATACCGAAACCAATACTCGGTAGCA
60953927 CTTTATATTTAACAGATAATACACAT
131 CTTTATATTTAACAGATAATACACAT
60953953 AACTTTCATT
Statistics
Matches: 154, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
156 154 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (156 bp):
TTCAGATGCTCAACCATCCTAGTGACATGTCACTTGTATCCTAATCTATTCCTAAGGTTCAAACG
GGATTTTCATCGAACACATATCCTTGCCATCTTCCGTAAAATACCGAAACCAATACTCGGTAGCA
CTTTATATTTAACAGATAATACACAT
Found at i:60960513 original size:21 final size:21
Alignment explanation
Indices: 60960489--60960532 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
60960479 ATGATCAACT
60960489 AGTTTAATTATTATATGAGAG
1 AGTTTAATTATTATATGAGAG
60960510 AGTTTAATTATTATATGAGAG
1 AGTTTAATTATTATATGAGAG
60960531 AG
1 AG
60960533 GACTCATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (21 bp):
AGTTTAATTATTATATGAGAG
Found at i:60961470 original size:40 final size:40
Alignment explanation
Indices: 60961426--60961534 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
60961416 TATTGATGAT
* * *
60961426 TGCACATACTTGCCCCTGTTTGTACTTCGGTACTCCTGAA
1 TGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAA
*
60961466 TGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTGAA
1 TGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAA
*
60961506 TGCACATACGTGACCCTATTTGTACTTCG
1 TGCACATACGTGCCCCTATTTGTACTTCG
60961535 ATTCCCTTAA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.34
Consensus pattern (40 bp):
TGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAA
Found at i:60973418 original size:34 final size:34
Alignment explanation
Indices: 60973375--60973444 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
60973365 AAATATTGAG
60973375 AATGACACTTAGTGTGCAAAATATCGAATGATTC
1 AATGACACTTAGTGTGCAAAATATCGAATGATTC
** *
60973409 AATGACACTTAGTGTGTGAAATATCTAATGATTC
1 AATGACACTTAGTGTGCAAAATATCGAATGATTC
60973443 AA
1 AA
60973445 AGGGAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (34 bp):
AATGACACTTAGTGTGCAAAATATCGAATGATTC
Found at i:60982857 original size:40 final size:40
Alignment explanation
Indices: 60982769--60982849 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 40
60982759 GAGTAGTTGA
*
60982769 TATACA-CTCGTTCATCATTTGAAAGAAAGCTTCTTTTGCC
1 TATACACCT-GTTCATCATTTAAAAGAAAGCTTCTTTTGCC
*
60982809 TATACACCTGTTCATCATTTAAAAGAAGGCTTCTTTTGCC
1 TATACACCTGTTCATCATTTAAAAGAAAGCTTCTTTTGCC
60982849 T
1 T
60982850 CCTCACCTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 36 0.95
41 2 0.05
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.38
Consensus pattern (40 bp):
TATACACCTGTTCATCATTTAAAAGAAAGCTTCTTTTGCC
Found at i:60984611 original size:25 final size:23
Alignment explanation
Indices: 60984522--60984661 Score: 84
Period size: 24 Copynumber: 5.8 Consensus size: 23
60984512 CCTTGTAACA
* *
60984522 GGAAGCTCACACAGAGCCATTTTG
1 GGAAGCTCATA-AGAGCCATATTG
*
60984546 GGAAGCTCAATAAGAGCC-TATCG
1 GGAAGCTC-ATAAGAGCCATATTG
* ** *
60984569 GGAAGCTTATTCGGGCCATATAATG
1 GGAAGCTCATAAGAGCCATAT--TG
*
60984594 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCAT-ATTG
* * * * * *
60984618 GTAAGTTCACAAAGAACTATATCG
1 GGAAGCTCA-TAAGAGCCATATTG
60984642 GGAAGCTCATAAAGAGCCAT
1 GGAAGCTCAT-AAGAGCCAT
60984662 TTAACGGGAA
Statistics
Matches: 86, Mismatches: 23, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
22 6 0.07
23 13 0.15
24 40 0.47
25 25 0.29
26 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (23 bp):
GGAAGCTCATAAGAGCCATATTG
Found at i:60990246 original size:23 final size:24
Alignment explanation
Indices: 60990216--60990264 Score: 91
Period size: 23 Copynumber: 2.1 Consensus size: 24
60990206 TGTGTCTAGG
60990216 CCGTGTGTGACACAC-GTCAGCCC
1 CCGTGTGTGACACACGGTCAGCCC
60990239 CCGTGTGTGACACACGGTCAGCCC
1 CCGTGTGTGACACACGGTCAGCCC
60990263 CC
1 CC
60990265 ATGGGCGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.16, C:0.41, G:0.27, T:0.16
Consensus pattern (24 bp):
CCGTGTGTGACACACGGTCAGCCC
Found at i:61003796 original size:154 final size:154
Alignment explanation
Indices: 61003484--61003823 Score: 450
Period size: 154 Copynumber: 2.2 Consensus size: 154
61003474 ATAAATCGAG
* * * *
61003484 TATTAGCGGCGTTTTTTCAATAATGCCGCTATAGGTCGACCTATAGCGGCGTTTTTATAAAAACG
1 TATTAGCGGCGCTTTTTCAAAAACGCCGCTATAGGTCGACCTATAGCGGCGTTTCTATAAAAACG
* * *
61003549 CCACTAAAAGATTAAGCTGAACGCGTCGTTTATTGTGAGCTTCAGTGGCAATAACGGTGCTTTAT
66 CCACTAAAAGATTAAACCGAACGCGTCGTTTATTGTGAGCTTCAGTGGCAATAACGGTGCTTCAT
* *
61003614 CAAAAACGCCACTATAGGTTTGAG
131 CAAAAACGCCACTATAGGATTGAA
*
61003638 TATTAGCGGCG-TTTTTCAGAAAACGCCGCTATAGGTCGACCTATAGCGGCGTTTCTATACAAAC
1 TATTAGCGGCGCTTTTTCA-AAAACGCCGCTATAGGTCGACCTATAGCGGCGTTTCTATAAAAAC
** * * * * *
61003702 GCTGCTAAAAGATTAAACCGAACGACGTTGTTTATTTTGTGCTTTAGTGGCAATAGCGGTGCTTC
65 GCCACTAAAAGATTAAACCGAACG-CGTCGTTTATTGTGAGCTTCAGTGGCAATAACGGTGCTTC
* *
61003767 CTCAAAAACGCCGCTATA-GATTGAA
129 ATCAAAAACGCCACTATAGGATTGAA
* * *
61003792 TATTAGCGGTGCTTTTTAAAAAACGTCGCTAT
1 TATTAGCGGCGCTTTTTCAAAAACGCCGCTAT
61003824 GGATTTGAGT
Statistics
Matches: 162, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
153 7 0.04
154 99 0.61
155 56 0.35
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (154 bp):
TATTAGCGGCGCTTTTTCAAAAACGCCGCTATAGGTCGACCTATAGCGGCGTTTCTATAAAAACG
CCACTAAAAGATTAAACCGAACGCGTCGTTTATTGTGAGCTTCAGTGGCAATAACGGTGCTTCAT
CAAAAACGCCACTATAGGATTGAA
Found at i:61003909 original size:42 final size:41
Alignment explanation
Indices: 61003770--61003910 Score: 194
Period size: 41 Copynumber: 3.4 Consensus size: 41
61003760 GTGCTTCCTC
* * * *
61003770 AAAAACGCCGCTATAGA-TTGAATATTAGCGGTGCTTTTTA
1 AAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTG
* * *
61003810 AAAAACGTCGCTATGGATTTGAGTTTTAGTGGCGCTTTTTG
1 AAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTG
*
61003851 AAAAACGCCGCAATAGATTTGAGTTTTAGCGGCGCTTTTTGG
1 AAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTT-G
61003893 AAAAACGCCGCTATAGAT
1 AAAAACGCCGCTATAGAT
61003911 CTAAACTATT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 15 0.17
41 54 0.62
42 18 0.21
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (41 bp):
AAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTG
Found at i:61004410 original size:21 final size:20
Alignment explanation
Indices: 61004386--61004440 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
61004376 AACACTGCCC
*
61004386 TAACCATAAATCCTAACCCAT
1 TAACCCTAAATCCTAACCC-T
* *
61004407 TAACCCTGACTCCTAACCCT
1 TAACCCTAAATCCTAACCCT
61004427 TAACCCCTAAATCC
1 TAA-CCCTAAATCC
61004441 ATAAACTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.35, C:0.40, G:0.02, T:0.24
Consensus pattern (20 bp):
TAACCCTAAATCCTAACCCT
Found at i:61004481 original size:14 final size:14
Alignment explanation
Indices: 61004442--61004487 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
61004432 CCTAAATCCA
*
61004442 TAAACTATAAACCT
1 TAAACTATAAACCC
*
61004456 TAAA-TTTGAAACCC
1 TAAACTAT-AAACCC
61004470 TAAACTATAAACCC
1 TAAACTATAAACCC
61004484 TAAA
1 TAAA
61004488 TTAATGACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 2 0.07
14 23 0.85
15 2 0.07
ACGTcount: A:0.50, C:0.22, G:0.02, T:0.26
Consensus pattern (14 bp):
TAAACTATAAACCC
Found at i:61004969 original size:22 final size:22
Alignment explanation
Indices: 61004944--61004991 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
61004934 GGGTTAAGAT
* *
61004944 TTAAAGGTTGAGGGTCT-AGGGG
1 TTAAAGGTTAAGAGT-TAAGGGG
61004966 TTAAAGGTTAAGAGTTAAGGGG
1 TTAAAGGTTAAGAGTTAAGGGG
61004988 TTAA
1 TTAA
61004992 GGGGATATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.31, C:0.02, G:0.38, T:0.29
Consensus pattern (22 bp):
TTAAAGGTTAAGAGTTAAGGGG
Found at i:61005012 original size:7 final size:7
Alignment explanation
Indices: 61005000--61005154 Score: 51
Period size: 7 Copynumber: 21.3 Consensus size: 7
61004990 AAGGGGATAT
61005000 GGTTTAG
1 GGTTTAG
61005007 GGTTTAG
1 GGTTTAG
* *
61005014 AGTTTAA
1 GGTTTAG
*
61005021 AGTTTAG
1 GGTTTAG
* *
61005028 AGATTAAG
1 -GGTTTAG
*
61005036 GGTTTAT
1 GGTTTAG
*
61005043 GGTTTAA
1 GGTTTAG
*
61005050 GGTTGAGG
1 GGTTTA-G
61005058 GGTTTAAG
1 GGTTT-AG
*
61005066 GGTTAATG
1 GGTTTA-G
** *
61005074 GG-ACAT
1 GGTTTAG
61005080 GGTTTAG
1 GGTTTAG
61005087 GGTTTAG
1 GGTTTAG
* *
61005094 TGTTTAA
1 GGTTTAG
**
61005101 ATTTTAAG
1 GGTTT-AG
* *
61005109 GATTAAG
1 GGTTTAG
* * *
61005116 GATTAAT
1 GGTTTAG
61005123 GGTTTAG
1 GGTTTAG
61005130 GGTTTAGG
1 GGTTTA-G
61005138 GGTTTAGG
1 GGTTTA-G
61005146 GGTTTAG
1 GGTTTAG
61005153 GG
1 GG
61005155 GTTAAGGGGA
Statistics
Matches: 109, Mismatches: 32, Indels: 14
0.70 0.21 0.09
Matches are distributed among these distances:
6 2 0.02
7 72 0.66
8 34 0.31
9 1 0.01
ACGTcount: A:0.25, C:0.01, G:0.35, T:0.39
Consensus pattern (7 bp):
GGTTTAG
Found at i:61005069 original size:80 final size:80
Alignment explanation
Indices: 61004980--61005155 Score: 237
Period size: 80 Copynumber: 2.2 Consensus size: 80
61004970 AGGTTAAGAG
* * *
61004980 TTAAGGGGTTAAGGGGATATGGTTTAGGGTTTAGAGTTTAAAGTTT-AGAGATTAAGGGTTTATG
1 TTAA-GGGTTAAGGGGACATGGTTTAGGGTTTAGAGTTTAAAGTTTAAG-GATTAAGGATTAATG
61005044 GTTTAAGGTTGAGGGGT
64 GTTTAAGGTTGAGGGGT
* * *
61005061 TTAAGGGTTAATGGGACATGGTTTAGGGTTTAGTGTTTAAATTTTAAGGATTAAGGATTAATGGT
1 TTAAGGGTTAAGGGGACATGGTTTAGGGTTTAGAGTTTAAAGTTTAAGGATTAAGGATTAATGGT
* *
61005126 TTAGGGTTTAGGGGT
66 TTAAGGTTGAGGGGT
* *
61005141 TTAGGGGTTTAGGGG
1 TTAAGGGTTAAGGGG
61005156 TTAAGGGGAC
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 77 0.93
81 6 0.07
ACGTcount: A:0.25, C:0.01, G:0.36, T:0.38
Consensus pattern (80 bp):
TTAAGGGTTAAGGGGACATGGTTTAGGGTTTAGAGTTTAAAGTTTAAGGATTAAGGATTAATGGT
TTAAGGTTGAGGGGT
Found at i:61005142 original size:8 final size:8
Alignment explanation
Indices: 61005123--61005163 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
61005113 AAGGATTAAT
61005123 GGTTTA-G
1 GGTTTAGG
61005130 GGTTTAGG
1 GGTTTAGG
61005138 GGTTTAGG
1 GGTTTAGG
61005146 GGTTTAGG
1 GGTTTAGG
*
61005154 GGTTAAGG
1 GGTTTAGG
61005162 GG
1 GG
61005164 ACATAGGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
7 6 0.19
8 26 0.81
ACGTcount: A:0.15, C:0.00, G:0.51, T:0.34
Consensus pattern (8 bp):
GGTTTAGG
Found at i:61005349 original size:16 final size:16
Alignment explanation
Indices: 61005296--61005349 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
61005286 ATATTAAATA
61005296 ATTTCAAATTTT-AATG
1 ATTTCAAATTTTCAA-G
61005312 ATTTCAAATTTTC-A-
1 ATTTCAAATTTTCAAG
61005326 A--T--AATTTTCAAG
1 ATTTCAAATTTTCAAG
61005338 ATTTCAAATTTT
1 ATTTCAAATTTT
61005350 ATGTAGTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
10 7 0.23
11 1 0.03
12 2 0.06
14 2 0.06
16 19 0.61
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (16 bp):
ATTTCAAATTTTCAAG
Found at i:61005390 original size:21 final size:22
Alignment explanation
Indices: 61005368--61005410 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
61005358 CTTTTAAATA
**
61005368 TTAGTTAAATTTAAAAAATTAT
1 TTAGTTAAATGAAAAAAATTAT
*
61005390 TTATTTAAATGAAAAAAATTA
1 TTAGTTAAATGAAAAAAATTA
61005411 AAATACTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (22 bp):
TTAGTTAAATGAAAAAAATTAT
Found at i:61005496 original size:18 final size:17
Alignment explanation
Indices: 61005457--61005493 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
61005447 GCAATATAAC
61005457 ATATTGTTTTTTAATTT
1 ATATTGTTTTTTAATTT
61005474 ATATTGTTTTTT-ATTT
1 ATATTGTTTTTTAATTT
61005490 ATAT
1 ATAT
61005494 ATTAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.70
Consensus pattern (17 bp):
ATATTGTTTTTTAATTT
Found at i:61007679 original size:11 final size:11
Alignment explanation
Indices: 61007663--61007688 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
61007653 GGATTATGTT
61007663 TTTAATTCTTG
1 TTTAATTCTTG
61007674 TTTAATTCTTG
1 TTTAATTCTTG
61007685 TTTA
1 TTTA
61007689 TCCTTAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.65
Consensus pattern (11 bp):
TTTAATTCTTG
Found at i:61008312 original size:60 final size:60
Alignment explanation
Indices: 61008247--61008427 Score: 344
Period size: 60 Copynumber: 3.0 Consensus size: 60
61008237 TTTCTATATT
* *
61008247 TCTATCATGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAA
1 TCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAA
61008307 TCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAA
1 TCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAA
61008367 TCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAA
1 TCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAA
61008427 T
1 T
61008428 ATTTAATAAA
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 119 1.00
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.44
Consensus pattern (60 bp):
TCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAA
Found at i:61008506 original size:24 final size:24
Alignment explanation
Indices: 61008479--61008549 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
61008469 ATTATTATTG
61008479 AAATATTATCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
61008503 AAATATTATTGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
61008527 AAATATTATCGCCCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
61008550 TTTAAGTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:61008755 original size:29 final size:29
Alignment explanation
Indices: 61008723--61008792 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
61008713 AACGACATGT
*
61008723 ATATTATTTAATTAAAATAAATTTTT-TCA
1 ATATTATTTAATTAAAAT-AATTTTTATAA
61008752 ATATTATTTAATTAAAATAATTTTTATAA
1 ATATTATTTAATTAAAATAATTTTTATAA
61008781 ATATTATTTAAT
1 ATATTATTTAAT
61008793 CCCGCAACTT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 7 0.18
29 32 0.82
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (29 bp):
ATATTATTTAATTAAAATAATTTTTATAA
Found at i:61008909 original size:9 final size:9
Alignment explanation
Indices: 61008897--61009387 Score: 242
Period size: 9 Copynumber: 53.6 Consensus size: 9
61008887 TATTTGATAT
*
61008897 CATAATTTA
1 CATAACTTA
61008906 CATAACTTA
1 CATAACTTA
* *
61008915 CAAAACGTA
1 CATAACTTA
61008924 CATAACTTA
1 CATAACTTA
*
61008933 TATAACTTA
1 CATAACTTA
* *
61008942 GATAA-ATA
1 CATAACTTA
* *
61008950 TATAATTTA
1 CATAACTTA
*
61008959 TATAACTTA
1 CATAACTTA
*
61008968 CACAACTTA
1 CATAACTTA
* *
61008977 TATAACATA
1 CATAACTTA
61008986 CATAACTTA
1 CATAACTTA
*
61008995 TATAACTTA
1 CATAACTTA
*
61009004 TATAACTTA
1 CATAACTTA
* *
61009013 GATAA-ATA
1 CATAACTTA
* *
61009021 TATAATTTA
1 CATAACTTA
*
61009030 TATAACTTA
1 CATAACTTA
*
61009039 CACAACTTA
1 CATAACTTA
* *
61009048 TATAACATA
1 CATAACTTA
61009057 CATAACTTA
1 CATAACTTA
*
61009066 TATAACTTA
1 CATAACTTA
*
61009075 TATAACTTA
1 CATAACTTA
* *
61009084 GATAA-ATA
1 CATAACTTA
*
61009092 TATAACTTA
1 CATAACTTA
*
61009101 CATAA-ATA
1 CATAACTTA
* * *
61009109 TATATCATA
1 CATAACTTA
61009118 CCATAACTTA
1 -CATAACTTA
61009128 CATAACTTA
1 CATAACTTA
61009137 CATAATACTTA
1 CAT-A-ACTTA
* *
61009148 AATATATTTTATA
1 CATA-A--CT-TA
*
61009161 TCATAATTTA
1 -CATAACTTA
61009171 CATAACTTA
1 CATAACTTA
*
61009180 CAAAACTTA
1 CATAACTTA
61009189 CATAACTTA
1 CATAACTTA
*
61009198 TATAACTTA
1 CATAACTTA
* *
61009207 GATAA-ATA
1 CATAACTTA
* *
61009215 TATAATTTA
1 CATAACTTA
**
61009224 CA-AAAATA
1 CATAACTTA
* * *
61009232 TATATCATA
1 CATAACTTA
61009241 TCATAACTTA
1 -CATAACTTA
61009251 CATAACTTA
1 CATAACTTA
61009260 CATAATACTTA
1 CAT-A-ACTTA
* *
61009271 AATATATTTTATA
1 CATA-A--CT-TA
*
61009284 TCATAATTTA
1 -CATAACTTA
61009294 CATAACTTA
1 CATAACTTA
*
61009303 CAAAACTTA
1 CATAACTTA
61009312 CATAACTTA
1 CATAACTTA
*
61009321 TATAACTTA
1 CATAACTTA
* *
61009330 GATAA-ATA
1 CATAACTTA
* *
61009338 TATAATTTA
1 CATAACTTA
**
61009347 CA-AAAATA
1 CATAACTTA
* * *
61009355 TATATCATA
1 CATAACTTA
61009364 TCATAACTTA
1 -CATAACTTA
61009374 CATAACTTA
1 CATAACTTA
61009383 CATAA
1 CATAA
61009388 TACTTAAATA
Statistics
Matches: 376, Mismatches: 83, Indels: 46
0.74 0.16 0.09
Matches are distributed among these distances:
8 45 0.12
9 269 0.72
10 30 0.08
11 18 0.05
12 2 0.01
13 6 0.02
14 6 0.02
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:61009124 original size:71 final size:71
Alignment explanation
Indices: 61008903--61009264 Score: 353
Period size: 71 Copynumber: 5.1 Consensus size: 71
61008893 ATATCATAAT
* * *
61008903 TTACATAACTTACAAAACGTACATAACTTATATAACTTAGATAAATATATAATTTATATAACTTA
1 TTACATAACATACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTATATAACTTA
61008968 CACAAC
66 CACAAC
* *
61008974 TTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATAATTTATATAACTTA
1 TTACATAACATACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTATATAACTTA
61009039 CACAAC
66 CACAAC
* * * * *
61009045 TTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATAACTTACATAA-ATA
1 TTACATAACATACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTATATAACTTA
* * *
61009109 TATATC
66 CACAAC
* * * * *
61009115 ATACCATAACTTACATAACTTACATAATACTTAAATATA-TT---T-TATATCATAATTTACATA
1 TTA-CATAACATACATAACTTACAT-A-ACTTATATA-ACTTAGATAAATAT-ATAATTTATATA
*
61009175 ACTTACAAAAC
61 ACTTACACAAC
* * * * * * * *
61009186 TTACATAACTTATATAACTTAGATAA-ATATATAATTTACAAAAATATAT-ATCATATCATAACT
1 TTACATAACATACATAACTTACATAACTTATATAACTTAGATAAATATATAAT-TTAT-ATAACT
*
61009249 TACATAAC
64 TACACAAC
61009257 TTACATAA
1 TTACATAA
61009265 TACTTAAATA
Statistics
Matches: 246, Mismatches: 32, Indels: 26
0.81 0.11 0.09
Matches are distributed among these distances:
66 1 0.00
67 7 0.03
68 1 0.00
69 7 0.03
70 43 0.17
71 175 0.71
72 1 0.00
73 10 0.04
74 1 0.00
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.37
Consensus pattern (71 bp):
TTACATAACATACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTATATAACTTA
CACAAC
Found at i:61009150 original size:43 final size:43
Alignment explanation
Indices: 61008975--61009423 Score: 292
Period size: 43 Copynumber: 10.7 Consensus size: 43
61008965 TTACACAACT
* * * **
61008975 TATATAACATA-CATAACTTATATAACTTATATAACTTAGATAAA
1 TATATATCATATCATAACTTACATAACTTACATAA--TACTTAAA
* * * * *
61009019 TATATAAT-TTAT-ATAACTTACACAACTTATATAACATACATAACT
1 TATAT-ATCATATCATAACTTACATAACTTACAT-A-ATACTTAA-A
* * * * * *
61009064 TATATAACTTAT-ATAACTTAGATAA-ATATATAACTTACATAAA
1 TATATATCATATCATAACTTACATAACTTACATAA--TACTTAAA
*
61009107 TATATATCATACCATAACTTACATAACTTACATAATACTTAAA
1 TATATATCATATCATAACTTACATAACTTACATAATACTTAAA
* * *
61009150 TATATTTTATATCATAATTTACATAACTTACA-AA-ACTT--A
1 TATATATCATATCATAACTTACATAACTTACATAATACTTAAA
* * * * * **
61009189 CATA-A-CTTAT-ATAACTTAGATAA-ATATATAATTTACAAAAA
1 TATATATCATATCATAACTTACATAACTTACATAA--TACTTAAA
61009230 TATATATCATATCATAACTTACATAACTTACATAATACTTAAA
1 TATATATCATATCATAACTTACATAACTTACATAATACTTAAA
* * *
61009273 TATATTTTATATCATAATTTACATAACTTACA-AA-ACTT--A
1 TATATATCATATCATAACTTACATAACTTACATAATACTTAAA
* * * * * **
61009312 CATA-A-CTTAT-ATAACTTAGATAA-ATATATAATTTACAAAAA
1 TATATATCATATCATAACTTACATAACTTACATAA--TACTTAAA
61009353 TATATATCATATCATAACTTACATAACTTACATAATACTTAAA
1 TATATATCATATCATAACTTACATAACTTACATAATACTTAAA
* *
61009396 TATATATCATAACATATCTTACATAACT
1 TATATATCATATCATAACTTACATAACT
61009424 AGCTTACGAA
Statistics
Matches: 314, Mismatches: 61, Indels: 61
0.72 0.14 0.14
Matches are distributed among these distances:
35 6 0.02
36 26 0.08
37 6 0.02
39 12 0.04
41 16 0.05
42 7 0.02
43 120 0.38
44 80 0.25
45 40 0.13
46 1 0.00
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.38
Consensus pattern (43 bp):
TATATATCATATCATAACTTACATAACTTACATAATACTTAAA
Found at i:61009201 original size:123 final size:123
Alignment explanation
Indices: 61009049--61009423 Score: 653
Period size: 123 Copynumber: 3.0 Consensus size: 123
61009039 CACAACTTAT
* * * * *
61009049 ATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATAACTTACATAAATATATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAATTTACAAAAATATATAT
*
61009114 CATACCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 CATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
61009172 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAATTTACAAAAATATATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAATTTACAAAAATATATAT
61009237 CATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 CATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
61009295 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAATTTACAAAAATATATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAATTTACAAAAATATATAT
* * *
61009360 CATATCATAACTTACATAACTTACATAATACTTAAATATATATCATAACAT-ATCTTAC
66 CATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAAT-TTAC
61009418 ATAACT
1 ATAACT
61009424 AGCTTACGAA
Statistics
Matches: 242, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
122 2 0.01
123 240 0.99
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.37
Consensus pattern (123 bp):
ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAATTTACAAAAATATATAT
CATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
Found at i:61009218 original size:17 final size:17
Alignment explanation
Indices: 61009196--61009235 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
61009186 TTACATAACT
* *
61009196 TATATAACTTAGATAAA
1 TATATAACTTACAAAAA
*
61009213 TATATAATTTACAAAAA
1 TATATAACTTACAAAAA
61009230 TATATA
1 TATATA
61009236 TCATATCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (17 bp):
TATATAACTTACAAAAA
Found at i:61009341 original size:17 final size:17
Alignment explanation
Indices: 61009319--61009358 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
61009309 TTACATAACT
* *
61009319 TATATAACTTAGATAAA
1 TATATAACTTACAAAAA
*
61009336 TATATAATTTACAAAAA
1 TATATAACTTACAAAAA
61009353 TATATA
1 TATATA
61009359 TCATATCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (17 bp):
TATATAACTTACAAAAA
Found at i:61010973 original size:46 final size:46
Alignment explanation
Indices: 61010923--61011096 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
61010913 TTTGGGCATT
61010923 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
* * *
61010969 CGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTGGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAAT--G--TC
* * * *
61011016 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
*
61011061 CTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61011097 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
45 3 0.03
46 59 0.55
47 27 0.25
48 1 0.01
49 1 0.01
50 5 0.05
51 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
Found at i:61011029 original size:93 final size:93
Alignment explanation
Indices: 61010915--61011088 Score: 278
Period size: 93 Copynumber: 1.9 Consensus size: 93
61010905 CTAGGATGTT
* *
61010915 TGGGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC-GAACTCGTT
1 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCTGAACTCGTT
61010979 GAGTTGAGTCCGAGTTCGAGAGATGTAAC
65 GAGTTGAGTCCGAGTTCGAGAGATGTAAC
* * * *
61011008 TGGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACGCCTGAGCTCGTTG
1 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTG
61011073 AGTTGAGTCCGAGTTC
66 AGTTGAGTCCGAGTTC
61011089 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTG
AGTTGAGTCCGAGTTCGAGAGATGTAAC
Found at i:61020574 original size:218 final size:218
Alignment explanation
Indices: 61020196--61021107 Score: 1797
Period size: 218 Copynumber: 4.2 Consensus size: 218
61020186 GCCATGTTGA
61020196 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
61020261 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
66 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
61020326 GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
131 GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
61020391 GAATATGGAGATGCCAAATCTGT
196 GAATATGGAGATGCCAAATCTGT
* *
61020414 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTTGGATCTTCTTCAACGTAAACAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
61020479 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
66 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
61020544 GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
131 GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
61020609 GAATATGGAGATGCCAAATCTGT
196 GAATATGGAGATGCCAAATCTGT
61020632 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
61020697 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
66 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
61020762 GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
131 GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
61020827 GAATATGGAGATGCCAAATCTGT
196 GAATATGGAGATGCCAAATCTGT
61020850 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
61020915 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
66 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
61020980 GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
131 GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
61021045 GAATATGGAGATGCCAAATCTGT
196 GAATATGGAGATGCCAAATCTGT
*
61021068 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAAT
61021108 TTGCTATCTT
Statistics
Matches: 689, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
218 689 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (218 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTT
GGATCTACTTCGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
GAATATGGAGATGCCAAATCTGT
Found at i:61020682 original size:44 final size:45
Alignment explanation
Indices: 61020589--61020682 Score: 102
Period size: 44 Copynumber: 2.1 Consensus size: 45
61020579 ATCTGCTATG
* ** * *
61020589 TCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTA
1 TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGTGA
* *
61020634 TCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCT-TGGA
1 TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGT-GA
61020678 TCTTC
1 TCTTC
61020683 TTCAACGTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.56
45 17 0.41
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (45 bp):
TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGTGA
Found at i:61020900 original size:44 final size:45
Alignment explanation
Indices: 61020807--61020900 Score: 102
Period size: 44 Copynumber: 2.1 Consensus size: 45
61020797 ATCTGCTATG
* ** * *
61020807 TCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTA
1 TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGTGA
* *
61020852 TCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCT-TGGA
1 TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGT-GA
61020896 TCTTC
1 TCTTC
61020901 TTCAACGTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.56
45 17 0.41
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (45 bp):
TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGTGA
Found at i:61021116 original size:44 final size:44
Alignment explanation
Indices: 61021015--61021152 Score: 168
Period size: 44 Copynumber: 3.1 Consensus size: 44
61021005 CAAAGGTTAG
* * * **
61021015 ATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAA
1 ATCTGCTA--TCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAA
*
61021062 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
* * *
61021106 ATTTGCTATCTTCGATCTGCTCTCTGACAATACAAAGATACCAA
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
61021150 ATC
1 ATC
61021153 ATCTTAGATT
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
44 56 0.70
45 17 0.21
47 7 0.09
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
Found at i:61021307 original size:265 final size:265
Alignment explanation
Indices: 61020807--61021420 Score: 812
Period size: 265 Copynumber: 2.3 Consensus size: 265
61020797 ATCTGCTATG
* * * ** *
61020807 TCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGAC
1 TCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
* * *
61020872 AATACAGAGACGCC-AA--ATCTTGGATCTTCTTCAACGTAAACACGTGAAAGCCTAATCAGCTA
65 AATACAGAGATGCCAAATCATCTTAGATCTTCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
* * *
61020934 TATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCATCTTGGATCTACTTCGATGTGAA
130 TATCTTCAATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAA
*
61020999 AACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAAT
195 AACATCCAAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCGTCGAATATGGAGATGCCAAAT
*
61021064 CTGTTA
260 CTATTA
*
61021070 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCTGACA
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
* * * * *
61021135 ATACAAAGATACCAAATCATCTTAGAT-TTGCTTCAGCGTAAACATGTGAAAGCCAAATCTGCTA
66 ATACAGAGATGCCAAATCATCTTAGATCTT-CTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
* * *
61021199 TGTCTTCGATCTACTCCTTATAAACGCAAGGATGTCAAATCATCTTGGATCTACTTCGATGT-AG
130 TATCTTCAATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGA-
* * *
61021263 AAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTCCGTCGGATATGGAGATGCCAAA
194 AAACATCCAAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCGTCGAATATGGAGATGCCAAA
61021328 TCTATTA
259 TCTATTA
* * * * *
61021335 TCTTAGATCTGCT-TCGATGTA-AAAACATCTGA-AGGTCAGATCTGCTATCTTCGATCTGCTCT
1 TCTTCGATCTGCTCTC--TG-ACAATACA---GAGATGCCAAATCTGCTATCTTCGATCTGCTCT
61021397 CTGACAATACAGAGATGCCAAATC
60 CTGACAATACAGAGATGCCAAATC
61021421 TGCTATCTTC
Statistics
Matches: 306, Mismatches: 34, Indels: 17
0.86 0.10 0.05
Matches are distributed among these distances:
262 51 0.17
263 19 0.06
264 5 0.02
265 173 0.57
266 7 0.02
267 1 0.00
268 48 0.16
269 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (265 bp):
TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
ATACAGAGATGCCAAATCATCTTAGATCTTCTTCAACGTAAACACGTGAAAGCCAAATCAGCTAT
ATCTTCAATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAA
ACATCCAAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCGTCGAATATGGAGATGCCAAATC
TATTA
Found at i:61021439 original size:44 final size:44
Alignment explanation
Indices: 61021374--61021464 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 44
61021364 TGAAGGTCAG
* *
61021374 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTAACAATACAGAGATGCCAA
*
61021418 ATCTGCTATCTTCAATTTGCTCTCTAACAATACAGAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTAACAATACAGAGATGCCAA
61021462 ATC
1 ATC
61021465 ATCTTAGGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGCTCTCTAACAATACAGAGATGCCAA
Found at i:61021642 original size:312 final size:312
Alignment explanation
Indices: 61021062--61021824 Score: 1256
Period size: 312 Copynumber: 2.4 Consensus size: 312
61021052 GAGATGCCAA
* *
61021062 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCT
* * * * *
61021127 CTCTGACAATACAAAGATACCAAATCATCTTAGATTTGCTTCAGCGTAAACATGTGAAAGCCAAA
66 CTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCCAAA
*
61021192 TCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGTCAAATCATCTTGGATCTACTTCG
131 TCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCG
* * *
61021257 ATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTCCGTCGGATATGGAGAT
196 ATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCCGTCGAATATGGAGAA
* *
61021322 GCCAAATCTATTATCTTAGATCTGCTTCGATGTAAAAACATCTGAAGGTCAG
261 GCCAAATCTATTATCTTAGATATGCTTCGATGTAAAAACATCCGAAGGTCAG
* *
61021374 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCAATTTGCT
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCT
* * *
61021439 CTCTAACAATACAGAGATGCCAAATCATCTTAGGTCTGCTTTAGCGTAAACACGTAAAAGCCAAA
66 CTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCCAAA
* * *
61021504 TCTGCTATGTCTTCGATCTGCTCCTTATAAACGTAAGGATGCCAAATCATCTTGGATCTACTTTG
131 TCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCG
61021569 ATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCCGTCGAATATGGAGAA
196 ATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCCGTCGAATATGGAGAA
* * * * *
61021634 GTCAAATCTGTTATCTTGGATATGCTTCGATGTGAAAACATCCGAATGTCAG
261 GCCAAATCTATTATCTTAGATATGCTTCGATGTAAAAACATCCGAAGGTCAG
* * * *
61021686 ATCTGCTATCTTTGATTTGCTCTCTAACAATACAGAGATGCCAAATCTGCTATATTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCT
61021751 CTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCCAAA
66 CTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCCAAA
61021816 TCTGCTATG
131 TCTGCTATG
61021825 CTTTAGCCTG
Statistics
Matches: 416, Mismatches: 35, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
312 416 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (312 bp):
ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCT
CTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCCAAA
TCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCG
ATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCCGTCGAATATGGAGAA
GCCAAATCTATTATCTTAGATATGCTTCGATGTAAAAACATCCGAAGGTCAG
Found at i:61021737 original size:44 final size:44
Alignment explanation
Indices: 61021686--61021776 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
61021676 CGAATGTCAG
* * *
61021686 ATCTGCTATCTTTGATTTGCTCTCTAACAATACAGAGATGCCAA
1 ATCTGCTATATTCGATCTGCTCTCTAACAATACAGAGATGCCAA
*
61021730 ATCTGCTATATTCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATATTCGATCTGCTCTCTAACAATACAGAGATGCCAA
61021774 ATC
1 ATC
61021777 ATCTTAGATC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (44 bp):
ATCTGCTATATTCGATCTGCTCTCTAACAATACAGAGATGCCAA
Found at i:61026057 original size:15 final size:15
Alignment explanation
Indices: 61026039--61026100 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
61026029 TAGGGTTACA
61026039 TTCTCTATTGCCTCT
1 TTCTCTATTGCCTCT
61026054 TTCTCT-TT-CC-CT
1 TTCTCTATTGCCTCT
* * * *
61026066 TCCTCTA-GGGCTACA
1 TTCTCTATTGCCT-CT
61026081 TTCTCTATTGCCTCT
1 TTCTCTATTGCCTCT
61026096 TTCTC
1 TTCTC
61026101 ATGGGGCATG
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
12 7 0.21
13 3 0.09
14 2 0.06
15 19 0.56
16 3 0.09
ACGTcount: A:0.08, C:0.35, G:0.08, T:0.48
Consensus pattern (15 bp):
TTCTCTATTGCCTCT
Found at i:61026061 original size:42 final size:42
Alignment explanation
Indices: 61026014--61026100 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
61026004 CGATTTTCAC
*
61026014 CTCTTTCCCTTCCTCTAGGGTTACATTCTCTATTGCCTCTTT
1 CTCTTTCCCTTCCTCTAGGGCTACATTCTCTATTGCCTCTTT
61026056 CTCTTTCCCTTCCTCTAGGGCTACATTCTCTATTGCCTCTTT
1 CTCTTTCCCTTCCTCTAGGGCTACATTCTCTATTGCCTCTTT
61026098 CTC
1 CTC
61026101 ATGGGGCATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.09, C:0.36, G:0.09, T:0.46
Consensus pattern (42 bp):
CTCTTTCCCTTCCTCTAGGGCTACATTCTCTATTGCCTCTTT
Found at i:61030026 original size:47 final size:47
Alignment explanation
Indices: 61029971--61030162 Score: 260
Period size: 47 Copynumber: 4.1 Consensus size: 47
61029961 TTAGGATTTT
* * * *
61029971 AATGTGATGAATGTGAATATGCGTATGTGTGATAAGGCCGAATGACC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
61030018 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
61030065 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAGGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
61030112 GATGTGATGAATGTGAACATGTATATATGTGGA-AAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGCC
61030159 AATG
1 AATG
61030163 CGAAATGTGT
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 129 0.98
48 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:61030272 original size:46 final size:46
Alignment explanation
Indices: 61030136--61030272 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
61030126 GAACATGTAT
* *
61030136 ATATGTGG-AAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAA-GCCAAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
61030182 ATATGAGATAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
61030228 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATG
61030273 TGTATATATA
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 76 0.96
47 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:61032320 original size:160 final size:160
Alignment explanation
Indices: 61031786--61032325 Score: 848
Period size: 160 Copynumber: 3.4 Consensus size: 160
61031776 CTAAGTCCCG
*
61031786 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
** *
61031851 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTC
66 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCGAAGAGCATTC
* *
61031916 GTGCTAGTGATATATCCGGGCTAAACCCCA
131 GTGCTAGTGATATATCCGTGCTAAACCCTA
*
61031946 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* *
61032011 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCTGAAGAGCATTT
66 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCGAAGAGCATTC
*
61032076 GTGCTAGTGATATATCCGTGCTAAA-CCTCG
131 GTGCTAGTGATATATCCGTGCTAAACCCT-A
* * ** *
61032106 AAGAGCATTCATGCTAGTGACGTATCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTGATATAT
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
61032171 CCGTGTTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCAAAGAGCATTC
66 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCGAAGAGCATTC
61032236 GTGCTAGTGATATATCCGTGCTAAACCCTA
131 GTGCTAGTGATATATCCGTGCTAAACCCTA
* * * * * *
61032266 AAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
61032326 CGTGTATTCG
Statistics
Matches: 348, Mismatches: 30, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
159 2 0.01
160 343 0.99
161 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (160 bp):
AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCGAAGAGCATTC
GTGCTAGTGATATATCCGTGCTAAACCCTA
Found at i:61032324 original size:40 final size:40
Alignment explanation
Indices: 61031773--61032312 Score: 769
Period size: 40 Copynumber: 13.5 Consensus size: 40
61031763 TGATATACCT
61031773 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
61031813 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
61031853 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
61031893 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
** *
61031933 GGGCTAAACCCCAAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
61031973 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
61032013 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
* * * *
61032053 GGGCTAAGTTCTGAAGAGCATTTGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
* * * *
61032093 GTGCTAA-ACCTCGAAGAGCATTCATGCTAGTGACGTATCC
1 GGGCTAAGTCC-CGAAGAGCATTCGTGCTAGTGATGTATCC
** * *
61032133 GGGCTAAGTTTCGAAGAGCATTCATGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
* * *
61032173 GTGTTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
* * *
61032213 GGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
* * * * * *
61032253 GTGCTAA-ACCCTAAAGAGCATTCGTGCTGGTGTTATATCC
1 GGGCTAAGTCCC-GAAGAGCATTCGTGCTAGTGATGTATCC
*
61032293 GGGCTAGGTCCCGAAGAGCA
1 GGGCTAAGTCCCGAAGAGCA
61032313 ATCATGCTGG
Statistics
Matches: 446, Mismatches: 50, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.01
40 440 0.99
41 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
Found at i:61045180 original size:17 final size:17
Alignment explanation
Indices: 61045155--61045187 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
61045145 GTAAGGTATA
61045155 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
61045172 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
61045188 AAATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:61045306 original size:24 final size:23
Alignment explanation
Indices: 61045290--61045359 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
61045280 ATACATAATT
61045290 TATAA-AAAATAAAAATAATATA
1 TATAATAAAATAAAAATAATATA
* * *
61045312 TATAATAAAATATAATTTATA-A
1 TATAATAAAATAAAAATAATATA
*
61045334 GTAAAATATATAATAAAAATAATATA
1 -TATAATA-A-AATAAAAATAATATA
61045360 CATTATTTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
22 6 0.17
23 18 0.50
24 1 0.03
25 10 0.28
26 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (23 bp):
TATAATAAAATAAAAATAATATA
Found at i:61045338 original size:18 final size:19
Alignment explanation
Indices: 61045297--61045343 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
61045287 ATTTATAAAA
61045297 AATAAAA-ATAATATATAT
1 AATAAAATATAATATATAT
61045315 AATAAAATATAAT-T-TAT
1 AATAAAATATAATATATAT
61045332 AAGTAAAATATA
1 AA-TAAAATATA
61045344 TAATAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 17 0.63
19 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
AATAAAATATAATATATAT
Found at i:61045347 original size:39 final size:38
Alignment explanation
Indices: 61045273--61045357 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 38
61045263 ACAATTAATG
* *
61045273 AATAATAATACATAATTTATAAAAAATAAAAATAATATA
1 AATAATAAAACATAATTTATAAAAAAT-AAAATAATAAA
* * *
61045312 TATAATAAAATATAATTTATAAGTAAAAT-ATATAATAAA
1 AATAATAAAACATAATTTATAA--AAAATAAAATAATAAA
61045351 AATAATA
1 AATAATA
61045358 TACATTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
39 33 0.87
41 5 0.13
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (38 bp):
AATAATAAAACATAATTTATAAAAAATAAAATAATAAA
Found at i:61051529 original size:68 final size:68
Alignment explanation
Indices: 61051441--61051576 Score: 218
Period size: 68 Copynumber: 2.0 Consensus size: 68
61051431 CCTCGAAGCA
* * *
61051441 TAAGCTACTACCTTAACTTCTTGCATAAGGACACAACCTAGTCCATTCAAGGATGCATCACTATA
1 TAAGCTACTACCTTAACTTCTTGCATAAGCACACAACCTAGTCCACTCAAGGATACATCACTATA
61051506 AAT
66 AAT
** *
61051509 TAAGCTACTACCTTGCCTTCTTGCATAAGCACACAACCTAGTCCACTCAAGGATACATCACTGTA
1 TAAGCTACTACCTTAACTTCTTGCATAAGCACACAACCTAGTCCACTCAAGGATACATCACTATA
61051574 AAT
66 AAT
61051577 CACAAATTCT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (68 bp):
TAAGCTACTACCTTAACTTCTTGCATAAGCACACAACCTAGTCCACTCAAGGATACATCACTATA
AAT
Found at i:61053994 original size:78 final size:78
Alignment explanation
Indices: 61053865--61054021 Score: 305
Period size: 78 Copynumber: 2.0 Consensus size: 78
61053855 CGATAAGAGT
61053865 CGTCACACTATCAAAATACAGGTATGGCATGTATAGTTAGACTTTTACACTAACTGTTCCGAGAA
1 CGTCACACTATCAAAATACAGGTATGGCATGTATAGTTAGACTTTTACACTAACTGTTCCGAGAA
61053930 ACGACTAAACTTG
66 ACGACTAAACTTG
61053943 CGTCACACTATCAAAATACAGGTATGGCATGTATAGTTAGACTTTTACACTAACTGTTCCGAGAA
1 CGTCACACTATCAAAATACAGGTATGGCATGTATAGTTAGACTTTTACACTAACTGTTCCGAGAA
*
61054008 CCGACTAAACTTG
66 ACGACTAAACTTG
61054021 C
1 C
61054022 TCTGATACCA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (78 bp):
CGTCACACTATCAAAATACAGGTATGGCATGTATAGTTAGACTTTTACACTAACTGTTCCGAGAA
ACGACTAAACTTG
Found at i:61055402 original size:46 final size:47
Alignment explanation
Indices: 61055296--61055417 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
61055286 TGTCTTCGAC
** * *
61055296 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
61055346 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
61055392 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
61055418 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:61056500 original size:81 final size:81
Alignment explanation
Indices: 61056407--61056568 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
61056397 AAAGCAATTT
*
61056407 CATACTAAAAACTTCTAGAATGCAAGTTTTGTAAATTATTCGATTTAGTCCCTAATCTCAACTTA
1 CATACTAAAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTAGTCCCTAATCTCAACTTA
61056472 AGCACTTTATGCATAG
66 AGCACTTTATGCATAG
61056488 CATACTAAAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTAGTCCCTAATCTCAACTTA
1 CATACTAAAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTAGTCCCTAATCTCAACTTA
61056553 AGCACTTTATGCATAG
66 AGCACTTTATGCATAG
61056569 AAGTTCATCA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (81 bp):
CATACTAAAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTAGTCCCTAATCTCAACTTA
AGCACTTTATGCATAG
Found at i:61072590 original size:19 final size:20
Alignment explanation
Indices: 61072566--61072603 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
61072556 TAGTCTTAAA
*
61072566 ATAAAATAA-AAGTAAAAAC
1 ATAAAATAATAAATAAAAAC
61072585 ATAAAATAATAAATAAAAA
1 ATAAAATAATAAATAAAAA
61072604 TTTTTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (20 bp):
ATAAAATAATAAATAAAAAC
Found at i:61074414 original size:254 final size:255
Alignment explanation
Indices: 61073965--61074470 Score: 651
Period size: 254 Copynumber: 2.0 Consensus size: 255
61073955 TGGGGCACAT
* *
61073965 GGCCAGAGAACATGCCCGTGTTCCCCAATATCAGCCCGTGTGATTCACGAATTTTGAATTTGAGC
1 GGCCAGAGAACACGCCCGTGTTCCCCAATATCAGCCCGTGTGATTCACAAATTTTGAATTTGAGC
* *
61074030 GCATCTGACAACTATTCCACACCTGTGTCCCTTGGGCGTGTGGATGCACACGACCATATCACACG
66 GCATCTGACAACTATTCCACACCCGTGTCCCTTGGGCGTGTGGACGCACACGACCATATCACACG
* * ** *
61074095 ATCGTGCTTGACTTCGTTCGCTTCTCCCCCGCCCATGTATGTAGGCCCACGCCTGTGGTAATTTA
131 ACCGTGCCTGACTTCGTTCGCTTCTCCCCCAACCATGTATGTAAGCCCACGCCTGTGGTAATTTA
* * * *
61074160 ATAGGTTTGGCCACAGGTGCTAGACACGGGCGTGT-T-GCACACCCGTGTTAGTTTGACAC
196 ACAGGTTTGACCACAGGTGCTAGAAACGGGCGTGTGTCGCAC-CCCGTGTTAATTTGACAC
* * * * * *
61074219 GGCCAGAGAATACGCTCGTGTTCCCTAATTTTAGCCCGTGTGATTCGCAAATTTTGAATTT-AGG
1 GGCCAGAGAACACGCCCGTGTTCCCCAATATCAGCCCGTGTGATTCACAAATTTTGAATTTGA-G
* * * * ** * * * * *
61074283 CGCGTTTGACAATTGTTCCATGCCCGTGTCCCTTGGTCGTGTGGGCGCACACGGCCATGTCGCAC
65 CGCATCTGACAACTATTCCACACCCGTGTCCCTTGGGCGTGTGGACGCACACGACCATATCACAC
* *
61074348 GACCGTGCCTGACTTCGTTCGCTTCTCCCCCAACCGTGTATGTAAGCCCATG-CTCGTGGTAATT
130 GACCGTGCCTGACTTCGTTCGCTTCTCCCCCAACCATGTATGTAAGCCCACGCCT-GTGGTAATT
* *
61074412 TAACAGGTTTGACCACGGGTGCTAGAAACGGGCGTGTGTCGCACGCCGTGTTAATTTGA
194 TAACAGGTTTGACCACAGGTGCTAGAAACGGGCGTGTGTCGCACCCCGTGTTAATTTGA
61074471 TAGGTTTGGC
Statistics
Matches: 214, Mismatches: 34, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
253 3 0.01
254 193 0.90
255 14 0.07
256 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.25, T:0.28
Consensus pattern (255 bp):
GGCCAGAGAACACGCCCGTGTTCCCCAATATCAGCCCGTGTGATTCACAAATTTTGAATTTGAGC
GCATCTGACAACTATTCCACACCCGTGTCCCTTGGGCGTGTGGACGCACACGACCATATCACACG
ACCGTGCCTGACTTCGTTCGCTTCTCCCCCAACCATGTATGTAAGCCCACGCCTGTGGTAATTTA
ACAGGTTTGACCACAGGTGCTAGAAACGGGCGTGTGTCGCACCCCGTGTTAATTTGACAC
Found at i:61081497 original size:28 final size:28
Alignment explanation
Indices: 61081459--61081640 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
61081449 TAAATTGTAC
*
61081459 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
61081487 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
61081515 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
61081543 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
61081571 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
61081599 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
61081626 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
61081641 GACTTAATAT
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 125 0.84
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:61088227 original size:45 final size:45
Alignment explanation
Indices: 61088175--61088261 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
61088165 TATGTTATCT
*
61088175 GAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
*
61088220 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
61088262 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
Found at i:61096975 original size:44 final size:44
Alignment explanation
Indices: 61096914--61097000 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
61096904 AGCTTTTCTT
* *
61096914 TTTTCTAATCTCACAATTTCTGAAATGTACAATTCAACCAACTC
1 TTTTCCAATATCACAATTTCTGAAATGTACAATTCAACCAACTC
*
61096958 TTTTCCAATATCACAATTTCTGAAATGTACAATTCAGCCAACT
1 TTTTCCAATATCACAATTTCTGAAATGTACAATTCAACCAACT
61097001 TATTGAGTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (44 bp):
TTTTCCAATATCACAATTTCTGAAATGTACAATTCAACCAACTC
Found at i:61106800 original size:27 final size:27
Alignment explanation
Indices: 61106765--61107056 Score: 264
Period size: 27 Copynumber: 10.8 Consensus size: 27
61106755 AATATCCGAG
* *
61106765 TTGTAAAATTATCGAAATACCCTTGAT
1 TTGTAAAATTACCGAAATACCCTTAAT
*
61106792 TTATAAAATTACCGAAATACCCTTAAT
1 TTGTAAAATTACCGAAATACCCTTAAT
61106819 TTGTAAAATTACCGAAATACCCTTAAT
1 TTGTAAAATTACCGAAATACCCTTAAT
* * ** **
61106846 TTGTTAAATTACTGAAATACCCCCAGG
1 TTGTAAAATTACCGAAATACCCTTAAT
* *
61106873 TTGTAAAATTACCAAAATACCCTTGAT
1 TTGTAAAATTACCGAAATACCCTTAAT
* * *** *
61106900 TTGTGAAATTATCGAAATACCCCCGAC
1 TTGTAAAATTACCGAAATACCCTTAAT
* *** **
61106927 TTGTAGAATTATTAAAATACCCTCGAT
1 TTGTAAAATTACCGAAATACCCTTAAT
* * *
61106954 TTGTAAAACTACCGAAATACCCCTAAC
1 TTGTAAAATTACCGAAATACCCTTAAT
**
61106981 TTGTAAAATTAGTGAAATACCAC-TAAT
1 TTGTAAAATTACCGAAATACC-CTTAAT
*
61107008 TTATAAAATTACCGAAATACCCTT-AT
1 TTGTAAAATTACCGAAATACCCTTAAT
** *
61107034 AGGGTAAGATTACCGAAATACCC
1 -TTGTAAAATTACCGAAATACCC
61107057 CTGTAGGGTA
Statistics
Matches: 212, Mismatches: 50, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
26 3 0.01
27 208 0.98
28 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCGAAATACCCTTAAT
Found at i:61106838 original size:54 final size:54
Alignment explanation
Indices: 61106765--61107056 Score: 291
Period size: 54 Copynumber: 5.4 Consensus size: 54
61106755 AATATCCGAG
* * * *
61106765 TTGTAAAATTATCGAAATACCCTTGATTTATAAAATTACCGAAATACCCTTAAT
1 TTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCCCTAAC
* * * * **
61106819 TTGTAAAATTACCGAAATACCCTTAATTTGTTAAATTACTGAAATACCCCCAGG
1 TTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCCCTAAC
* * * **
61106873 TTGTAAAATTACCAAAATACCCTTGATTTGTGAAATTATCGAAATACCCCCGAC
1 TTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCCCTAAC
* *** * *
61106927 TTGTAGAATTATTAAAATACCCTCGATTTGTAAAACTACCGAAATACCCCTAAC
1 TTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCCCTAAC
** * * *
61106981 TTGTAAAATTAGTGAAATACCAC-TAATTTATAAAATTACCGAAATACCCTTATA-
1 TTGTAAAATTACCGAAATACC-CTTGATTTGTAAAATTACCGAAATACCCCTA-AC
** *
61107035 GGGTAAGATTACCGAAATACCC
1 TTGTAAAATTACCGAAATACCC
61107057 CTGTAGGGTA
Statistics
Matches: 197, Mismatches: 39, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
53 1 0.01
54 194 0.98
55 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCCCTAAC
Found at i:61107063 original size:27 final size:27
Alignment explanation
Indices: 61107015--61107112 Score: 133
Period size: 27 Copynumber: 3.6 Consensus size: 27
61107005 AATTTATAAA
61107015 ATTACCGAAATACCCTTATAGGGTAAG
1 ATTACCGAAATACCCTTATAGGGTAAG
* *
61107042 ATTACCGAAATACCCCTGTAGGGTAAG
1 ATTACCGAAATACCCTTATAGGGTAAG
** * *
61107069 ATTGTCGAAATACCCTTATAGAGTAGG
1 ATTACCGAAATACCCTTATAGGGTAAG
*
61107096 ATTATCGAAATACCCTT
1 ATTACCGAAATACCCTT
61107113 GTTAGGTAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (27 bp):
ATTACCGAAATACCCTTATAGGGTAAG
Found at i:61109948 original size:44 final size:44
Alignment explanation
Indices: 61109859--61109960 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 44
61109849 TCCTAAACAG
* *
61109859 GGTCTTACACGAAA--TCAAATACGATGCCGATGTCCCAGACTT
1 GGTCTTACACGAAATCTCAAATACGATGCCAATGTCCCACACTT
**
61109901 GGTCTTACACGTAAATCTCAAAT-CGATGCCAATGTCGTACA-TGT
1 GGTCTTACACG-AAATCTCAAATACGATGCCAATGTCCCACACT-T
61109945 GGTCTTACACGAAATC
1 GGTCTTACACGAAATC
61109961 ACATATCGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
42 11 0.21
43 9 0.17
44 26 0.50
45 6 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (44 bp):
GGTCTTACACGAAATCTCAAATACGATGCCAATGTCCCACACTT
Found at i:61117276 original size:26 final size:26
Alignment explanation
Indices: 61117247--61117299 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
61117237 AGATACGCAG
61117247 ATAGCTCGGAAAGCTAGTACAATGCC
1 ATAGCTCGGAAAGCTAGTACAATGCC
61117273 ATAGCTCGGAAAGCTAGTACAATGCC
1 ATAGCTCGGAAAGCTAGTACAATGCC
61117299 A
1 A
61117300 GCGTCCCAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (26 bp):
ATAGCTCGGAAAGCTAGTACAATGCC
Found at i:61117406 original size:42 final size:43
Alignment explanation
Indices: 61117292--61117413 Score: 115
Period size: 43 Copynumber: 2.8 Consensus size: 43
61117282 AAAGCTAGTA
* * *
61117292 CAATGCCAGC-GTCCCAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCA-CTGTCCCAGACATGGTCTTACACGAAATCAAATAT
* * * * *
61117335 CAATGTCACTATCCCAGACAAGGTATTACACGAAATCAAGTA-
1 CAATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATAT
*
61117377 CGATGCCGA-TGTCCCAGACATGGTCTTACACGTAAAT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACG-AAAT
61117414 TTCAAATCGA
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 26 0.41
43 37 0.59
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
CAATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATAT
Found at i:61124091 original size:27 final size:26
Alignment explanation
Indices: 61124033--61124145 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
61124023 AGGAAGCGTC
* *
61124033 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
61124061 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
61124088 CTGGTGGCTCAGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* **
61124116 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
61124142 CTGG
1 CTGG
61124146 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.50
28 30 0.41
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:61124118 original size:55 final size:54
Alignment explanation
Indices: 61124033--61124145 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 54
61124023 AGGAAGCGTC
* * *
61124033 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* *
61124088 CTGGTGGCTCA-GCCAC-GATTATCTGTATCTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCT-ATGCCACAAATTATCTG-ATCTGGTGACTCTACCACATTATCTGTT
61124142 CTGG
1 CTGG
61124146 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 20 0.39
55 30 0.59
56 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:61127419 original size:48 final size:48
Alignment explanation
Indices: 61127346--61127568 Score: 219
Period size: 48 Copynumber: 4.8 Consensus size: 48
61127336 TGGTAAGATA
* *
61127346 CCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
* **
61127394 CCAATGCCATGTCCTAGAC-TCGGTCTTACATGGGATTGCA-AGTCGATG
1 CCAATGCCATGTCCCAGACAT-GGTCTTACATGGGATCACATA-TCGATG
* *
61127442 CCAATGCCATGTCCCAGACATGGTCTTACATGCGATCACATATTGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
** **** * *
61127490 CC---GGTA-G-CCCAG-CTATGGTCTTACACAATATTACATATCAATG
1 CCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCGATG
*
61127533 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGAT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
61127569 TGTACATAAC
Statistics
Matches: 139, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
42 1 0.01
43 29 0.21
44 1 0.01
45 2 0.01
46 2 0.01
47 3 0.02
48 98 0.71
49 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
Found at i:61127919 original size:87 final size:87
Alignment explanation
Indices: 61127773--61127946 Score: 339
Period size: 87 Copynumber: 2.0 Consensus size: 87
61127763 TACCTCGAGA
*
61127773 CTCAAAATATGGCTACTATTCGATTTAGTCCACAACCTTGCTATTTCCTCGGTTTACGTTCAGAC
1 CTCAAAATATGGCTACTAGTCGATTTAGTCCACAACCTTGCTATTTCCTCGGTTTACGTTCAGAC
61127838 TCCTTTTTTCTTGATATATAAT
66 TCCTTTTTTCTTGATATATAAT
61127860 CTCAAAATATGGCTACTAGTCGATTTAGTCCACAACCTTGCTATTTCCTCGGTTTACGTTCAGAC
1 CTCAAAATATGGCTACTAGTCGATTTAGTCCACAACCTTGCTATTTCCTCGGTTTACGTTCAGAC
61127925 TCCTTTTTTCTTGATATATAAT
66 TCCTTTTTTCTTGATATATAAT
61127947 AGCAAATTTC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.24, C:0.23, G:0.12, T:0.41
Consensus pattern (87 bp):
CTCAAAATATGGCTACTAGTCGATTTAGTCCACAACCTTGCTATTTCCTCGGTTTACGTTCAGAC
TCCTTTTTTCTTGATATATAAT
Found at i:61135927 original size:45 final size:47
Alignment explanation
Indices: 61135863--61135956 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 47
61135853 AACTCGCACA
61135863 AATGCCTTCGAGACTTAGCCCGG-T-TAACTCGCACCAATGCCTTCC
1 AATGCCTTCGAGACTTAGCCCGGATATAACTCGCACCAATGCCTTCC
*
61135908 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATGCCTTC
1 AATGCCTTCGAGACTTAGCCCGG--ATA-TAACTCGCACCAATGCCTTC
61135957 GGGACTTAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
45 22 0.51
48 1 0.02
50 20 0.47
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.24
Consensus pattern (47 bp):
AATGCCTTCGAGACTTAGCCCGGATATAACTCGCACCAATGCCTTCC
Found at i:61136134 original size:40 final size:40
Alignment explanation
Indices: 61135748--61136130 Score: 538
Period size: 40 Copynumber: 9.5 Consensus size: 40
61135738 AATCCAAGTA
* * * *
61135748 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACCAATG
*
61135787 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
*
61135827 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
* * * * * *
61135867 CCTTCGAGACTTAGCCCGGTTAACTCGCACCAAT-GCCTTCCAATG
1 CCTTCGGGACTTAGCCCGGAT-A-TAGTA--ACTCG-C-ACCAATG
61135912 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
61135952 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
61135992 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
*
61136032 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
* * *
61136072 CCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
61136112 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
61136131 TTATCATCCA
Statistics
Matches: 311, Mismatches: 24, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
39 12 0.04
40 259 0.83
41 4 0.01
42 4 0.01
43 4 0.01
44 4 0.01
45 24 0.08
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
Found at i:61144545 original size:21 final size:21
Alignment explanation
Indices: 61144521--61144562 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
61144511 AAATCTGTCG
61144521 AAAATAATCAAAATTAATTAT
1 AAAATAATCAAAATTAATTAT
* *
61144542 AAAATAATTAAAATTCATTAT
1 AAAATAATCAAAATTAATTAT
61144563 GTTAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAATAATCAAAATTAATTAT
Found at i:61147432 original size:25 final size:25
Alignment explanation
Indices: 61147404--61147453 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
61147394 ATAAACTATT
*
61147404 AATAATTTAAT-AAATTGAAAATTTA
1 AATAATTAAATAAAATT-AAAATTTA
61147429 AATAATTAAATAAAATTAAAATTTA
1 AATAATTAAATAAAATTAAAATTTA
61147454 GGAGAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
AATAATTAAATAAAATTAAAATTTA
Found at i:61156417 original size:42 final size:42
Alignment explanation
Indices: 61156297--61156466 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 42
61156287 TTCCAATATG
*
61156297 TGATTTTGTGTAAGACCATGTCTGGGAT-GTTGGCATCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGGGATAG-TGGCATCGTATT
* * *
61156338 TGAGATTTACGTGTAAGACCATATCTGGGACATTGGCATCGTATT
1 T--GATTT-CGTGTAAGACCATGTCTGGGATAGTGGCATCGTATT
* *
61156383 TGATTTCGTTTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCATGTCTGGGATAGTGGCATCG-TATT
* * * * * * *
61156426 TGGTTACATGTAAGACCACGTCTGGGACATTGGCATTGTAT
1 TGATTTCGTGTAAGACCATGTCTGGGATAGTGGCATCGTAT
61156467 GAGCTTTTCG
Statistics
Matches: 105, Mismatches: 18, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.29
43 43 0.41
44 27 0.26
45 4 0.04
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.35
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGATAGTGGCATCGTATT
Found at i:61156477 original size:86 final size:85
Alignment explanation
Indices: 61156293--61156469 Score: 207
Period size: 86 Copynumber: 2.1 Consensus size: 85
61156283 AGGATTCCAA
* * * *
61156293 TATGTGATTTTGTGTAAGACCATGTCTGGGATGTTGGCATCGATTTGAGATTTACGTGTAAGACC
1 TATGAGATTTCGTTTAAGACCATGTCTGGGATGTTGGCATCGATTTGAGA-TTACATGTAAGACC
*
61156358 ATATCTGGGACATTGGCATCG
65 ACATCTGGGACATTGGCATCG
** *
61156379 TATTTGATTTCGTTTAAGACCCTGTCTGGGATAG-TGGCATCGATATTTG-G-TTACATGTAAGA
1 TATGAGATTTCGTTTAAGACCATGTCTGGGAT-GTTGGCATCG--ATTTGAGATTACATGTAAGA
* *
61156441 CCACGTCTGGGACATTGGCATTG
63 CCACATCTGGGACATTGGCATCG
61156464 TATGAG
1 TATGAG
61156470 CTTTTCGTGT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
85 35 0.45
86 36 0.46
87 2 0.03
88 5 0.06
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (85 bp):
TATGAGATTTCGTTTAAGACCATGTCTGGGATGTTGGCATCGATTTGAGATTACATGTAAGACCA
CATCTGGGACATTGGCATCG
Done.