Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 188 of 276
Found at i:61919901 original size:29 final size:28
Alignment explanation
Indices: 61919856--61919913 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
61919846 ATAAAGATAC
*
61919856 TTTATGTTTTATATTATATTATATTATA
1 TTTATGTATTATATTATATTATATTATA
61919884 TTTATGATATTATATTATATTATATTATA
1 TTTATG-TATTATATTATATTATATTATA
61919913 T
1 T
61919914 ATATAAACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (28 bp):
TTTATGTATTATATTATATTATATTATA
Found at i:61921673 original size:47 final size:47
Alignment explanation
Indices: 61921596--61921712 Score: 164
Period size: 47 Copynumber: 2.5 Consensus size: 47
61921586 GATATTGTTA
* * *
61921596 CTGT-TACCGTTACTGTTACTATTTCGGATTTGTTTCGATAAGGTACT
1 CTGTGTACCG-TACTGTTACTGTTTCAGATTTGTTCCGATAAGGTACT
*
61921643 CTGTGTACCGTACTGTTACTGTTTCAGATTTGTTCCGATGAGGTACT
1 CTGTGTACCGTACTGTTACTGTTTCAGATTTGTTCCGATAAGGTACT
* *
61921690 CTGTGTACCGTATTGCTACTGTT
1 CTGTGTACCGTACTGTTACTGTT
61921713 ACTATTACTG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
47 58 0.92
48 5 0.08
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (47 bp):
CTGTGTACCGTACTGTTACTGTTTCAGATTTGTTCCGATAAGGTACT
Found at i:61921888 original size:18 final size:18
Alignment explanation
Indices: 61921840--61921925 Score: 100
Period size: 18 Copynumber: 4.7 Consensus size: 18
61921830 AAAGATCGAC
* *
61921840 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-CTGAT
61921859 TGTTACTGAATAACTGAT
1 TGTTACTGAATAACTGAT
* * *
61921877 TATTATTGAATAATTGAT
1 TGTTACTGAATAACTGAT
* *
61921895 TGTTACCGAATAACTGAC
1 TGTTACTGAATAACTGAT
61921913 TGTTACTGAATAA
1 TGTTACTGAATAA
61921926 ATAATCATTC
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
18 43 0.77
19 13 0.23
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (18 bp):
TGTTACTGAATAACTGAT
Found at i:61921906 original size:36 final size:37
Alignment explanation
Indices: 61921837--61921925 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 37
61921827 TAGAAAGATC
* *
61921837 GACTGTTACTGAATAATTTAATTGTTACTGAATAACT
1 GACTATTACTGAATAATTTAATTGTTACCGAATAACT
* * *
61921874 GATTATTATTGAATAA-TTGATTGTTACCGAATAACT
1 GACTATTACTGAATAATTTAATTGTTACCGAATAACT
*
61921910 GACTGTTACTGAATAA
1 GACTATTACTGAATAA
61921926 ATAATCATTC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 31 0.70
37 13 0.30
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (37 bp):
GACTATTACTGAATAATTTAATTGTTACCGAATAACT
Found at i:61925304 original size:27 final size:27
Alignment explanation
Indices: 61925273--61925450 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
61925263 TAAATTGTAC
61925273 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
61925300 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
61925326 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
61925354 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
61925382 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
61925409 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
61925436 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
61925451 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:61925387 original size:82 final size:81
Alignment explanation
Indices: 61925274--61925429 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
61925264 AAATTGTACA
* *
61925274 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
61925338 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
61925355 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
61925420 TGCGAGTTGA
65 TGCGAATTGA
61925430 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:61925441 original size:82 final size:81
Alignment explanation
Indices: 61925270--61925450 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
61925260 GATTAAATTG
* *
61925270 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
61925335 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
61925351 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
61925415 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
61925433 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
61925451 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:61951759 original size:39 final size:39
Alignment explanation
Indices: 61951701--61951879 Score: 259
Period size: 39 Copynumber: 4.5 Consensus size: 39
61951691 GCATGATATT
61951701 TGGAATTATAATCCGGACTTAAGGTCCGCAGGCTATATGC
1 TGGAATTAT-ATCCGGACTTAAGGTCCGCAGGCTATATGC
**
61951741 TGGAATTATATCCGGACTTAAGGTCTACAGGCTATATGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
* *
61951780 TGGAAATATATCCAGACTTAAGGTCCGCAGGCTATATGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
* * *
61951819 TGGAATTATAATCCGGACTTAAGGTTCGCAGGTTACATGC
1 TGGAATTAT-ATCCGGACTTAAGGTCCGCAGGCTATATGC
* *
61951859 TGGAAATATATCCGGGCTTAA
1 TGGAATTATATCCGGACTTAA
61951880 AGTTCCGAAG
Statistics
Matches: 125, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 82 0.66
40 43 0.34
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (39 bp):
TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
Found at i:61951879 original size:79 final size:78
Alignment explanation
Indices: 61951701--61951879 Score: 270
Period size: 79 Copynumber: 2.3 Consensus size: 78
61951691 GCATGATATT
*
61951701 TGGAATTATAATCCGGACTTAAGGTCCGCAGGCTATATGCTGGAATTATATCCGGACTTAAGGTC
1 TGGAAATAT-ATCCGGACTTAAGGTCCGCAGGCTATATGCTGGAATTATATCCGGACTTAAGGTC
*
61951766 TACAGGCTATATGC
65 TACAGGCTACATGC
*
61951780 TGGAAATATATCCAGACTTAAGGTCCGCAGGCTATATGCTGGAATTATAATCCGGACTTAAGGT-
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGCTGGAATTAT-ATCCGGACTTAAGGTC
* *
61951844 TCGCAGGTTACATGC
65 T-ACAGGCTACATGC
*
61951859 TGGAAATATATCCGGGCTTAA
1 TGGAAATATATCCGGACTTAA
61951880 AGTTCCGAAG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
78 39 0.43
79 52 0.57
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (78 bp):
TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGCTGGAATTATATCCGGACTTAAGGTCT
ACAGGCTACATGC
Found at i:61957071 original size:29 final size:29
Alignment explanation
Indices: 61957012--61957069 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
61957002 CAAATAGCCG
*
61957012 AAGCTAGTTAAATCGCGCACTTAGTGCCC
1 AAGCTAGTTAAATCGCACACTTAGTGCCC
*
61957041 AAGCTAGTTTAAATCGTACACTTAGTGCC
1 AAGCTAG-TTAAATCGCACACTTAGTGCC
61957070 AAAACTTCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCC
Found at i:61962944 original size:43 final size:43
Alignment explanation
Indices: 61962888--61962974 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
61962878 TATTAGATTC
*
61962888 TTTAATTATTATTTATATACTTACTTACTAAGCTATATAAGCT
1 TTTAATTAATATTTATATACTTACTTACTAAGCTATATAAGCT
*
61962931 TTTAATTAATATTTATGTACTTACTTACTAAGCTATATAAGCT
1 TTTAATTAATATTTATATACTTACTTACTAAGCTATATAAGCT
61962974 T
1 T
61962975 ACTTTCTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.48
Consensus pattern (43 bp):
TTTAATTAATATTTATATACTTACTTACTAAGCTATATAAGCT
Found at i:61962978 original size:22 final size:22
Alignment explanation
Indices: 61962907--61962978 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
61962897 TATTTATATA
61962907 CTTACTTACTAAGCTATATAAG
1 CTTACTTACTAAGCTATATAAG
* * *
61962929 CTT--TTAATTAA--TATTTATG
1 CTTACTT-ACTAAGCTATATAAG
61962948 TACTTACTTACTAAGCTATATAAG
1 --CTTACTTACTAAGCTATATAAG
61962972 CTTACTT
1 CTTACTT
61962979 TCTTTTCTCT
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
19 6 0.16
20 2 0.05
21 7 0.19
22 14 0.38
23 2 0.05
24 6 0.16
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.44
Consensus pattern (22 bp):
CTTACTTACTAAGCTATATAAG
Found at i:61967011 original size:18 final size:19
Alignment explanation
Indices: 61966975--61967011 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
61966965 ACATTTCTAA
61966975 ATTTGTAATCAAGTGTTTG
1 ATTTGTAATCAAGTGTTTG
61966994 ATTTGTCAA-CAA-TGTTTG
1 ATTTGT-AATCAAGTGTTTG
61967012 TCAGTTCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 9 0.53
20 2 0.12
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (19 bp):
ATTTGTAATCAAGTGTTTG
Found at i:61967049 original size:120 final size:120
Alignment explanation
Indices: 61966886--61967125 Score: 453
Period size: 120 Copynumber: 2.0 Consensus size: 120
61966876 ATACAGTGGT
61966886 TGTTTGTCAGTTCACCCTGGTAGCACAAAAATGTATAATGATTTAAAGAAGTTATATTGGTGGCC
1 TGTTTGTCAGTTCACCCTGGTAGCACAAAAATGTATAATGATTTAAAGAAGTTATATTGGTGGCC
* *
61966951 AGGCATGAAAAGGGACATTTCTAAATTTGTAATCAAGTGTTTGATTTGTCAACAA
66 AGGCATGAAAAGGGACATTTCTAAATTTGTAACCAAGTGTTTGATCTGTCAACAA
61967006 TGTTTGTCAGTTCACCCTGGTAGCACAAAAATGTATAATGATTTAAAGAAGTTATATTGGTGGCC
1 TGTTTGTCAGTTCACCCTGGTAGCACAAAAATGTATAATGATTTAAAGAAGTTATATTGGTGGCC
*
61967071 AGGCATGAAAAGGGACATTTCTGAATTTGTAACCAAGTGTTTGATCTGTCAACAA
66 AGGCATGAAAAGGGACATTTCTAAATTTGTAACCAAGTGTTTGATCTGTCAACAA
61967126 GTAAAAGCTG
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (120 bp):
TGTTTGTCAGTTCACCCTGGTAGCACAAAAATGTATAATGATTTAAAGAAGTTATATTGGTGGCC
AGGCATGAAAAGGGACATTTCTAAATTTGTAACCAAGTGTTTGATCTGTCAACAA
Found at i:61975230 original size:17 final size:16
Alignment explanation
Indices: 61975198--61975228 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
61975188 AGTTAAGGAT
61975198 TTCAAGATTTTTGGGC
1 TTCAAGATTTTTGGGC
*
61975214 TTCAGGATTTTTGGG
1 TTCAAGATTTTTGGG
61975229 GCGTTATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.29, T:0.45
Consensus pattern (16 bp):
TTCAAGATTTTTGGGC
Found at i:61980874 original size:28 final size:29
Alignment explanation
Indices: 61980831--61980945 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
61980821 TACCTGTATC
* *
61980831 TGGCCCATTAAACCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* * *
61980859 TGGCCCATTAGGCCCAAACCACCTAT-ATA
1 TGGCCCATTAAGCCCAAATCACAT-TCATA
* * *
61980888 TGGCCCATCAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
61980917 TGGCCCGTTAAGCCC-AGTCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
61980945 T
1 T
61980946 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
28 26 0.37
29 44 0.62
30 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:61985074 original size:34 final size:34
Alignment explanation
Indices: 61985028--61985115 Score: 131
Period size: 34 Copynumber: 2.6 Consensus size: 34
61985018 TTGCATTTTG
*
61985028 TACTGATTCTGTTACTGAATTGGGCTAAGGCCCA
1 TACTGATACTGTTACTGAATTGGGCTAAGGCCCA
*
61985062 TACTGATACTGTTACTGAATTGGGTTAAGGCCCA
1 TACTGATACTGTTACTGAATTGGGCTAAGGCCCA
* * *
61985096 CACTGTTACTGCTACTGAAT
1 TACTGATACTGTTACTGAAT
61985116 GGGTAAAAGG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (34 bp):
TACTGATACTGTTACTGAATTGGGCTAAGGCCCA
Found at i:61985126 original size:34 final size:34
Alignment explanation
Indices: 61985029--61985128 Score: 114
Period size: 34 Copynumber: 2.9 Consensus size: 34
61985019 TGCATTTTGT
* * *
61985029 ACTGATTCTGTTACTGAATTGGGCT-AAGGCCCAT
1 ACTGATACTGCTACTGAATTGGG-TAAAGGCCCAC
* *
61985063 ACTGATACTGTTACTGAATTGGGTTAAGGCCCAC
1 ACTGATACTGCTACTGAATTGGGTAAAGGCCCAC
*
61985097 ACTGTTACTGCTACTGAA-TGGGTAAAAGGCCC
1 ACTGATACTGCTACTGAATTGGGT-AAAGGCCC
61985129 TAACTGAGAT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
33 6 0.10
34 53 0.90
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (34 bp):
ACTGATACTGCTACTGAATTGGGTAAAGGCCCAC
Found at i:61989031 original size:247 final size:248
Alignment explanation
Indices: 61988579--61989079 Score: 691
Period size: 247 Copynumber: 2.0 Consensus size: 248
61988569 GGCAAATGGC
* * *
61988579 TTGGAAAATAGCCTAGAAATTGTCCACATGGTTAGACACACGGGAATGTATCTAGGCCATGTGTG
1 TTGGAAAATAGACTAGAAATTGTCCACACGGTTAGACACACAGGAATGTATCTAGGCCATGTGTG
* *
61988644 ACACACGATCTACTCCATGGGCGTGTGATCTAGCCGTGTTTCCCCTGCACCCTAATTATGCAAAA
66 ACACACGATCTACTCCATGGGCGTGTGATCCAGCCGTGTGTCCCCTGCACCCTAATTATGCAAAA
* * ** *
61988709 TAGAATATCCAGTAGTAAACACACGGGCAAAGACACGGTAGTGTGTCTCAACCGTGTGAAGGACA
131 TAGAATACCCAGTAGTAAACACACGAGCAAAGACACGACAGTGTGTCTCAACCATGTGAAGGACA
* * *
61988774 CAGCCTTAGGACATGGGCATGTGCCCAGGCCGTGTGAAGTCTACACTTAATTT
196 CAGCCTTAGGACATGGGCATATGCCCAGGCCATGTGAAGTCTACACTTAAATT
* * * *
61988827 TTGGAAAATAGACTAGAAATTGTCCACACGGTTAGACACACAGGCATGTGTCTAGGCCGTGTTTG
1 TTGGAAAATAGACTAGAAATTGTCCACACGGTTAGACACACAGGAATGTATCTAGGCCATGTGTG
* * * * * * *
61988892 ACCCACGGTCTACTCCATGGGTGTGTGATCCAGTCGTGTGT-CTCTGTATCCTAATTATGCAAAA
66 ACACACGATCTACTCCATGGGCGTGTGATCCAGCCGTGTGTCCCCTGCACCCTAATTATGCAAAA
* * * * *
61988956 TAGAATGCCCAGTAGTAAGCACACGAGTAAAGACACGACAGTGTGTCTCAGCCATGTGAAGGATA
131 TAGAATACCCAGTAGTAAACACACGAGCAAAGACACGACAGTGTGTCTCAACCATGTGAAGGACA
* * *
61989021 -TGACCTTAGGACATGGGCGTATGCCCAGGCCATGTGAAGTCTGCACTTAAATT
196 CAG-CCTTAGGACATGGGCATATGCCCAGGCCATGTGAAGTCTACACTTAAATT
61989074 TTGGAA
1 TTGGAA
61989080 TTTAATTCAC
Statistics
Matches: 220, Mismatches: 32, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
246 1 0.00
247 126 0.57
248 93 0.42
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (248 bp):
TTGGAAAATAGACTAGAAATTGTCCACACGGTTAGACACACAGGAATGTATCTAGGCCATGTGTG
ACACACGATCTACTCCATGGGCGTGTGATCCAGCCGTGTGTCCCCTGCACCCTAATTATGCAAAA
TAGAATACCCAGTAGTAAACACACGAGCAAAGACACGACAGTGTGTCTCAACCATGTGAAGGACA
CAGCCTTAGGACATGGGCATATGCCCAGGCCATGTGAAGTCTACACTTAAATT
Found at i:61991990 original size:45 final size:43
Alignment explanation
Indices: 61991940--61992043 Score: 122
Period size: 45 Copynumber: 2.4 Consensus size: 43
61991930 TTGAATTTGA
*
61991940 GGCACTAAGTGTGCGAGAA-ATGAAATAGCTATGGCTATTAA-AAGT
1 GGCACTAAGTGTGCGAGAATAT-AAA-AGCGATGGCTA--AATAAGT
* *
61991985 GGCACTGAGTGTGCTAGAATATAAAAGCGATGGCTAAATAAGT
1 GGCACTAAGTGTGCGAGAATATAAAAGCGATGGCTAAATAAGT
*
61992028 GACACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
61992044 TACCTATATA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
42 2 0.04
43 17 0.33
44 10 0.20
45 20 0.39
46 2 0.04
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (43 bp):
GGCACTAAGTGTGCGAGAATATAAAAGCGATGGCTAAATAAGT
Found at i:61997286 original size:48 final size:48
Alignment explanation
Indices: 61997218--61997592 Score: 513
Period size: 48 Copynumber: 7.8 Consensus size: 48
61997208 ATGAATCCAC
* * *
61997218 ATATCATCGCCCATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* *
61997266 ATATCATCGCCAATGTCATGTCCCAGACATGGTCTTA-ATAGGCACAT
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* * * * * *
61997313 ATAACATCGTCGATGCCATGTCCCAGACATAGTCTTACACAAGCATAT
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
*
61997361 ATATCATC-CCAATGCCATGTCCCAGACATAGTCTTACACAGGCACAT
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* *
61997408 ATATCATCCCCAATGCCATGTCCCAGACATGGTCTTACACAGTCACAT
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* * * *
61997456 ATATCATTGCCGATGTCATGTCCTAGACATGGTCTTACACAGGCACAT
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
*
61997504 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAC
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* * *
61997552 ATTTCAGGT-GTCGATGCCATGTCCCAGACATGGTCTTACAC
1 ATATCA--TCGCCAATGCCATGTCCCAGACATGGTCTTACAC
61997593 GAAATCTCAT
Statistics
Matches: 289, Mismatches: 34, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
47 82 0.28
48 176 0.61
49 30 0.10
50 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (48 bp):
ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
Found at i:61997334 original size:95 final size:96
Alignment explanation
Indices: 61997218--61997592 Score: 513
Period size: 95 Copynumber: 3.9 Consensus size: 96
61997208 ATGAATCCAC
* * *
61997218 ATATCATCGCCCATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCAATGTC
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCAATGCC
*
61997283 ATGTCCCAGACATGGTCTTA-ATAGGCACAT
66 ATGTCCCAGACATGGTCTTACACAGGCACAT
* * * * * * *
61997313 ATAACATCGTCGATGCCATGTCCCAGACATAGTCTTACACAAGCATATATATCATC-CCAATGCC
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCAATGCC
*
61997377 ATGTCCCAGACATAGTCTTACACAGGCACAT
66 ATGTCCCAGACATGGTCTTACACAGGCACAT
* * * * * *
61997408 ATATCATCCCCAATGCCATGTCCCAGACATGGTCTTACACAGTCACATATATCATTGCCGATGTC
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCAATGCC
*
61997473 ATGTCCTAGACATGGTCTTACACAGGCACAT
66 ATGTCCCAGACATGGTCTTACACAGGCACAT
* * *
61997504 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATTTCAGGT-GTCGATG
1 ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCA--TCGCCAATG
61997568 CCATGTCCCAGACATGGTCTTACAC
64 CCATGTCCCAGACATGGTCTTACAC
61997593 GAAATCTCAT
Statistics
Matches: 245, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
94 26 0.11
95 104 0.42
96 85 0.35
97 29 0.12
98 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (96 bp):
ATATCATCGCCAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCAATGCC
ATGTCCCAGACATGGTCTTACACAGGCACAT
Found at i:61999704 original size:49 final size:49
Alignment explanation
Indices: 61999632--61999925 Score: 315
Period size: 51 Copynumber: 5.9 Consensus size: 49
61999622 GCCGAAGCTA
* *
61999632 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
61999681 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCATCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
** * * **
61999731 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
61999779 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
61999831 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
61999879 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
61999926 TCACAATAGA
Statistics
Matches: 204, Mismatches: 31, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
47 2 0.01
48 4 0.02
49 76 0.37
50 41 0.20
51 77 0.38
52 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:61999866 original size:100 final size:99
Alignment explanation
Indices: 61999631--61999925 Score: 398
Period size: 100 Copynumber: 3.0 Consensus size: 99
61999621 AGCCGAAGCT
* * * * * * * *
61999631 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG---TCTGGTACACGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TAACAGTTTTCGGGTACGCAT
* * *
61999693 AGTAGCCTGCACTTAGTACTACACACGTGACCTCATC
65 AGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAC
** *
61999730 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTACAGTTTTCGGGTACGCATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATAACAGTTTTCGGGTACGCATA
61999795 GTAGCCTGCACTTAGTACTACACATGCGACCAAC
66 GTAGCCTGCACTTAGTACTACACATGCGACCAAC
*
61999829 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCAT
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATAACAGTTTTCGGGTACGCAT
61999894 AGTAGCCTGCACTTAGTACTACACATGCGACC
65 AGTAGCCTGCACTTAGTACTACACATGCGACC
61999926 TCACAATAGA
Statistics
Matches: 175, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
98 4 0.02
99 41 0.23
100 93 0.53
101 37 0.21
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATAACAGTTTTCGGGTACGCATA
GTAGCCTGCACTTAGTACTACACATGCGACCAAC
Found at i:62002114 original size:15 final size:15
Alignment explanation
Indices: 62002058--62002122 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
62002048 TAAAGATAAC
*
62002058 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
62002072 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
62002087 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
62002102 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
62002117 AAGAAA
1 AAGAAA
62002123 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:62002124 original size:30 final size:31
Alignment explanation
Indices: 62002058--62002126 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
62002048 TAAAGATAAC
*
62002058 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
62002088 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
62002117 AAGAAACCCA
1 AAGAAACCCA
62002127 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:62019441 original size:3 final size:3
Alignment explanation
Indices: 62019433--62019503 Score: 58
Period size: 3 Copynumber: 24.0 Consensus size: 3
62019423 ATAGTAATTC
** * *
62019433 TAA TAA TAA TAA GCA TAA TAA TAA -AA TTAA TAA TAG TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
*
62019478 T-A TAC TAA TAA -AA TAA TAAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA
62019504 ATAAAAACAA
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
2 6 0.11
3 42 0.79
4 5 0.09
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:62026040 original size:64 final size:64
Alignment explanation
Indices: 62025957--62026077 Score: 172
Period size: 64 Copynumber: 1.9 Consensus size: 64
62025947 TATGTGAGTA
* * * * *
62025957 ATGCAATATGTACTCTATTTTAAATGCTTAAATGTTGCTTGTATGGTAAGTTCATATTCAAATT
1 ATGCAATATGTACTCTATTTTAAATGCTTAAATATTGCATGCATGCTAAGTACATATTCAAATT
*
62026021 ATGCAATATGTAC-CATATTTTAAATGCTTTAATATTGCATGCATGCTAAGTACATAT
1 ATGCAATATGTACTC-TATTTTAAATGCTTAAATATTGCATGCATGCTAAGTACATAT
62026078 ATAATTAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
63 1 0.02
64 49 0.98
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.41
Consensus pattern (64 bp):
ATGCAATATGTACTCTATTTTAAATGCTTAAATATTGCATGCATGCTAAGTACATATTCAAATT
Found at i:62032134 original size:28 final size:28
Alignment explanation
Indices: 62032102--62032165 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
62032092 TAAGAATAGT
*
62032102 GAAATTACT-TGAATACCCCTGTGTATGG
1 GAAATTACTGT-AATACCCCTATGTATGG
*
62032130 GAAATTACTGTTATACCCCTATGTATGG
1 GAAATTACTGTAATACCCCTATGTATGG
*
62032158 AAAATTAC
1 GAAATTAC
62032166 CATTATACCC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 31 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (28 bp):
GAAATTACTGTAATACCCCTATGTATGG
Found at i:62032171 original size:28 final size:28
Alignment explanation
Indices: 62032114--62032178 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
62032104 AATTACTTGA
* * **
62032114 ATACCCCTGTGTATGGGAAATTACTGTT
1 ATACCCCTATGTATGGAAAATTACCATT
62032142 ATACCCCTATGTATGGAAAATTACCATT
1 ATACCCCTATGTATGGAAAATTACCATT
62032170 ATACCCCTA
1 ATACCCCTA
62032179 GGGGTACTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGGAAAATTACCATT
Found at i:62032347 original size:93 final size:92
Alignment explanation
Indices: 62032244--62032429 Score: 363
Period size: 93 Copynumber: 2.0 Consensus size: 92
62032234 ATTGTATATC
62032244 TGTTGCATAGGGACATGGGTTATATTATGGAGGAAGCGTCTTGGTGGGTATGTCACAATTATCTG
1 TGTTGCATAGGGACATGGGTTATATTATGGAGGAAGCGTCTTGGTGGGTATGTCACAATTATCTG
62032309 ATCTGGTGGCTCTGCCACATATATCTA
66 ATCTGGTGGCTCTGCCACATATATCTA
62032336 NTGTTGCATAGGGACATGGGTTATATTATGGAGGAAGCGTCTTGGTGGGTATGTCACAATTATCT
1 -TGTTGCATAGGGACATGGGTTATATTATGGAGGAAGCGTCTTGGTGGGTATGTCACAATTATCT
62032401 GATCTGGTGGCTCTGCCACATATATCTA
65 GATCTGGTGGCTCTGCCACATATATCTA
62032429 T
1 T
62032430 TCTGGTGGTT
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
92 1 0.01
93 92 0.99
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (92 bp):
TGTTGCATAGGGACATGGGTTATATTATGGAGGAAGCGTCTTGGTGGGTATGTCACAATTATCTG
ATCTGGTGGCTCTGCCACATATATCTA
Found at i:62032409 original size:27 final size:26
Alignment explanation
Indices: 62032394--62032488 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 26
62032384 GTATGTCACA
62032394 ATTATCTGATCTGGTGGCTCTGCCAC
1 ATTATCTGATCTGGTGGCTCTGCCAC
* *
62032420 ATATATCT-ATTCTGGTGGTTCTACCAC
1 AT-TATCTGA-TCTGGTGGCTCTGCCAC
* *
62032447 GATTATCTGTATCTGGTGACTCTGTCAC
1 -ATTATCTG-ATCTGGTGGCTCTGCCAC
*
62032475 ATTATCTGTTCTGG
1 ATTATCTGATCTGG
62032489 CAGCCATGCT
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
26 8 0.14
27 33 0.58
28 15 0.26
29 1 0.02
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (26 bp):
ATTATCTGATCTGGTGGCTCTGCCAC
Found at i:62033852 original size:29 final size:29
Alignment explanation
Indices: 62033819--62033928 Score: 116
Period size: 29 Copynumber: 3.8 Consensus size: 29
62033809 GAATACAAGA
* *
62033819 TGATTTGGGCCTAACGGGCCATATAAAGG
1 TGATTTGGGCCTAATGGGCCATATAAATG
* * *
62033848 TGATTTGGGTCTGATGGGCCATATGAATG
1 TGATTTGGGCCTAATGGGCCATATAAATG
* * *
62033877 TGAATTGAGCCTGATGGGCCATATAAATG
1 TGATTTGGGCCTAATGGGCCATATAAATG
*
62033906 AGA-TTGGGCC-AAGTGGGCCATAT
1 TGATTTGGGCCTAA-TGGGCCATAT
62033929 GCATGTATGT
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.01
28 16 0.24
29 51 0.75
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGATTTGGGCCTAATGGGCCATATAAATG
Found at i:62039886 original size:12 final size:12
Alignment explanation
Indices: 62039869--62039904 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
62039859 GTGATCGGTT
62039869 TGAGTGATTTGA
1 TGAGTGATTTGA
62039881 TGAGTGATTTGA
1 TGAGTGATTTGA
* *
62039893 GGAGGGATTTGA
1 TGAGTGATTTGA
62039905 GGAGGAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.36
Consensus pattern (12 bp):
TGAGTGATTTGA
Found at i:62039905 original size:12 final size:12
Alignment explanation
Indices: 62039874--62039909 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
62039864 CGGTTTGAGT
* *
62039874 GATTTGATGAGT
1 GATTTGAGGAGG
62039886 GATTTGAGGAGG
1 GATTTGAGGAGG
62039898 GATTTGAGGAGG
1 GATTTGAGGAGG
62039910 AAAATAAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.00, G:0.44, T:0.31
Consensus pattern (12 bp):
GATTTGAGGAGG
Found at i:62047664 original size:239 final size:239
Alignment explanation
Indices: 62047245--62047722 Score: 956
Period size: 239 Copynumber: 2.0 Consensus size: 239
62047235 TCATCTTTCT
62047245 ATCTCTACTCAACCGTTACCCTTTAGTTTTGCCTATGGATCTCTACCCTTGTTCGTCTTTTTTGG
1 ATCTCTACTCAACCGTTACCCTTTAGTTTTGCCTATGGATCTCTACCCTTGTTCGTCTTTTTTGG
62047310 ATTTCTTTTGGCTTTTTATAGGTTTTTTTTCTAGGGTAAATCCAACAACCATGTTTATCTTGTCC
66 ATTTCTTTTGGCTTTTTATAGGTTTTTTTTCTAGGGTAAATCCAACAACCATGTTTATCTTGTCC
62047375 TCTTTTTAAATTCTTTTTTCAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTTTTTTTAG
131 TCTTTTTAAATTCTTTTTTCAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTTTTTTTAG
62047440 GATAAAAGCCAATAGCCCAAGAATATCTTCTCCTCTTTTTTAGA
196 GATAAAAGCCAATAGCCCAAGAATATCTTCTCCTCTTTTTTAGA
62047484 ATCTCTACTCAACCGTTACCCTTTAGTTTTGCCTATGGATCTCTACCCTTGTTCGTCTTTTTTGG
1 ATCTCTACTCAACCGTTACCCTTTAGTTTTGCCTATGGATCTCTACCCTTGTTCGTCTTTTTTGG
62047549 ATTTCTTTTGGCTTTTTATAGGTTTTTTTTCTAGGGTAAATCCAACAACCATGTTTATCTTGTCC
66 ATTTCTTTTGGCTTTTTATAGGTTTTTTTTCTAGGGTAAATCCAACAACCATGTTTATCTTGTCC
62047614 TCTTTTTAAATTCTTTTTTCAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTTTTTTTAG
131 TCTTTTTAAATTCTTTTTTCAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTTTTTTTAG
62047679 GATAAAAGCCAATAGCCCAAGAATATCTTCTCCTCTTTTTTAGA
196 GATAAAAGCCAATAGCCCAAGAATATCTTCTCCTCTTTTTTAGA
62047723 TAGATTTTTC
Statistics
Matches: 239, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
239 239 1.00
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.46
Consensus pattern (239 bp):
ATCTCTACTCAACCGTTACCCTTTAGTTTTGCCTATGGATCTCTACCCTTGTTCGTCTTTTTTGG
ATTTCTTTTGGCTTTTTATAGGTTTTTTTTCTAGGGTAAATCCAACAACCATGTTTATCTTGTCC
TCTTTTTAAATTCTTTTTTCAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTTTTTTTAG
GATAAAAGCCAATAGCCCAAGAATATCTTCTCCTCTTTTTTAGA
Found at i:62049935 original size:35 final size:34
Alignment explanation
Indices: 62049890--62050045 Score: 152
Period size: 35 Copynumber: 4.5 Consensus size: 34
62049880 TGTACATATG
62049890 TGATGATATATTGAACTTGTATATTTGGTCACATA
1 TGATGATATATTGAACTTGTATATTT-GTCACATA
* * * * *
62049925 TGATGTTATATTAAACTTGAATATTTGACTACATG
1 TGATGATATATTGAACTTGTATATTTGTC-ACATA
* * * * *
62049960 TGATGTTTTATTGAGCTTGTATATTCGGTCATATA
1 TGATGATATATTGAACTTGTATATT-TGTCACATA
*
62049995 TGATGATATATTGTACTTGTATATTTGTC-CATA
1 TGATGATATATTGAACTTGTATATTTGTCACATA
*
62050028 TGTTATGATATAATGAAC
1 TG--ATGATATATTGAAC
62050046 CTTGAGTATT
Statistics
Matches: 96, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
33 5 0.05
34 5 0.05
35 84 0.88
36 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.45
Consensus pattern (34 bp):
TGATGATATATTGAACTTGTATATTTGTCACATA
Found at i:62049972 original size:70 final size:70
Alignment explanation
Indices: 62049887--62050045 Score: 192
Period size: 70 Copynumber: 2.3 Consensus size: 70
62049877 ATATGTACAT
* *
62049887 ATGTGATGATATATTGAACTTGTATATTTGGTCACATATGATGTTATATTAAACTTGAATATTTG
1 ATGTGATGATATATTGAACTTGTATATTCGGTCACATATGATGATATATTAAACTTGAATATTTG
62049952 ACTAC
66 ACTAC
* * * * ** *
62049957 ATGTGATGTTTTATTGAGCTTGTATATTCGGTCATATATGATGATATATTGTACTTGTATATTTG
1 ATGTGATGATATATTGAACTTGTATATTCGGTCACATATGATGATATATTAAACTTGAATATTTG
* * *
62050022 TCCAT
66 ACTAC
* *
62050027 ATGTTATGATATAATGAAC
1 ATGTGATGATATATTGAAC
62050046 CTTGAGTATT
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.45
Consensus pattern (70 bp):
ATGTGATGATATATTGAACTTGTATATTCGGTCACATATGATGATATATTAAACTTGAATATTTG
ACTAC
Found at i:62052934 original size:27 final size:26
Alignment explanation
Indices: 62052917--62052986 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
62052907 ATATTAAGTC
62052917 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
62052944 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
62052972 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
62052987 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:62052980 original size:28 final size:28
Alignment explanation
Indices: 62052917--62053014 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
62052907 ATATTAAGTC
*
62052917 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
62052944 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
62052972 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
62053001 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62053015 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:62053478 original size:12 final size:12
Alignment explanation
Indices: 62053461--62053487 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
62053451 TGGGCATACT
62053461 TATGTATATATA
1 TATGTATATATA
62053473 TATGTATATATA
1 TATGTATATATA
62053485 TAT
1 TAT
62053488 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:62054833 original size:13 final size:13
Alignment explanation
Indices: 62054815--62054839 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62054805 TAATGGTATA
62054815 TTGAATCCATGAC
1 TTGAATCCATGAC
62054828 TTGAATCCATGA
1 TTGAATCCATGA
62054840 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:62055425 original size:27 final size:27
Alignment explanation
Indices: 62055387--62055565 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
62055377 TAAATTGTAC
62055387 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *** *
62055414 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGGTTTGACTATGT
** * *
62055440 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGGTTTGACTATGT
*
62055468 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
* * *
62055496 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *
62055523 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
*
62055550 AGCACTGAGTGTGCGG
1 AGCACTAAGTGTGCGG
62055566 GCTCAATATA
Statistics
Matches: 126, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.82
28 22 0.17
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGTTTGACTATGT
Found at i:62055448 original size:54 final size:55
Alignment explanation
Indices: 62055387--62055564 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 55
62055377 TAAATTGTAC
* * *
62055387 AGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
* * ** * *
62055442 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-ATTGAATATGAT
* * * *
62055496 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
*
62055550 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62055565 GGCTCAATAT
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
54 60 0.58
55 43 0.42
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
Found at i:62055501 original size:82 final size:81
Alignment explanation
Indices: 62055388--62055543 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62055378 AAATTGTACA
* *
62055388 GCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62055452 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62055469 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62055534 TGCGAGTTGA
65 TGCGAATTGA
62055544 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 14 0.21
82 52 0.78
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62055555 original size:82 final size:81
Alignment explanation
Indices: 62055384--62055565 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 81
62055374 GATTAAATTG
* *
62055384 TACAGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62055449 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62055465 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62055529 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62055547 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
62055566 GCTCAATATA
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62058639 original size:46 final size:46
Alignment explanation
Indices: 62058572--62058746 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
62058562 TGTAACCCGC
*
62058572 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTATTTGCAT
* * *
62058618 CCATAAGTGAACTCGGACTCAACTCATCGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G--TATTTGCAT
* * * ** *
62058668 CTC-T---CGAACTCGGACTAAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTATTTGCAT
* *
62058711 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
62058747 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
46 60 0.58
47 25 0.24
48 1 0.01
50 9 0.09
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTATTTGCAT
Found at i:62058747 original size:93 final size:93
Alignment explanation
Indices: 62058580--62058751 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
62058570 GCCCATAAGT
* ** *
62058580 GAACTCAGACTCAACTCAACGAGCTCGGGTATTTGCATCCATAAGTGAACTCGGACTCAACTCAT
1 GAACTCAGACTAAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAT
62058645 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
62058673 GAACTCGGACTAAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTAAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC-A
*
62058738 T-GAGTTCGGATGCC
65 TCGAGCTCGGATGCC
62058752 CAAATATTCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 69 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTAAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAT
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:62074212 original size:50 final size:50
Alignment explanation
Indices: 62074095--62074488 Score: 383
Period size: 50 Copynumber: 7.8 Consensus size: 50
62074085 ATTGTGAGAA
* * * *** * *
62074095 CACATGTGTAGTACTATGTGCAGGCTACAATGTGTTTAAGATAGTTTTAGTT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TGTTAGGT
* * *
62074147 CACGTGTGTAGTACTAAGTACAGGTTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * *
62074197 CGCATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * * * * *
62074248 CACGTGTGTAGTAATAAGTGTAGGCTACTACGTGTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
62074298 CACGTGTGCAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
62074348 CGCATGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
62074398 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACTAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
62074448 CGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
62074489 GAGCTTCAAT
Statistics
Matches: 277, Mismatches: 64, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
50 204 0.74
51 40 0.14
52 33 0.12
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:62079448 original size:37 final size:37
Alignment explanation
Indices: 62079398--62079476 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
62079388 TTATTACGAA
* *
62079398 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
62079435 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
62079472 GTCTT
1 GTCTT
62079477 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:62085034 original size:101 final size:102
Alignment explanation
Indices: 62084857--62085091 Score: 319
Period size: 101 Copynumber: 2.3 Consensus size: 102
62084847 ACACATGTGC
* ** *
62084857 AGTACTATGTGCAGGCTACTATGTGTTTCAGACAGTTTTAGGTCAAGTGTGTAGTACTAAATGCA
1 AGTACTAAGTGCAGGCTACTATGTGTACCAGACAGTTTTAGATCAAGTGTGTAGTACTAAATGCA
* * *
62084922 GGCTACTACGTGTACCCGATTGTTAGGTTGCATATAT
66 GGCTACTACGTGTACCAGATTGATAGGTCGCATATAT
* * * * *
62084959 AGTACTAAGTGCAGGCTACTATGTGTACCCGATAG-TTTCGATCACGTGTGTAGTACTAAGTGCA
1 AGTACTAAGTGCAGGCTACTATGTGTACCAGACAGTTTTAGATCAAGTGTGTAGTACTAAATGCA
* * *
62085023 GGCTACTACGTGTACCAGATTGATAGGTCGCTTGTGT
66 GGCTACTACGTGTACCAGATTGATAGGTCGCATATAT
*
62085060 AGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGTACTAAGTGCAGGCTACTATGTGTACCAGA
62085092 GAGCTTCTGT
Statistics
Matches: 116, Mismatches: 17, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
101 86 0.74
102 30 0.26
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (102 bp):
AGTACTAAGTGCAGGCTACTATGTGTACCAGACAGTTTTAGATCAAGTGTGTAGTACTAAATGCA
GGCTACTACGTGTACCAGATTGATAGGTCGCATATAT
Found at i:62085088 original size:50 final size:50
Alignment explanation
Indices: 62084850--62085091 Score: 227
Period size: 50 Copynumber: 4.8 Consensus size: 50
62084840 TGTGAGAACA
* * * **
62084850 CATGTGCAGTACTATGTGCAGGCTACTATGTGTTTCAGACAGTT-TTAGGTC-
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG--A-TTGTTAGGTCG
* * * *
62084901 AAGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCCGATTGTTAGGTTG
1 CA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
* * * * * * * *
62084952 CATATATAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGTTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCG
* *
62085003 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
* * *
62085053 CTTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
62085092 GAGCTTCTGT
Statistics
Matches: 155, Mismatches: 32, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
49 2 0.01
50 82 0.53
51 42 0.27
52 29 0.19
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
Found at i:62086452 original size:19 final size:19
Alignment explanation
Indices: 62086430--62086471 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
62086420 AACTTGGTGT
62086430 AACATGAGTATAGATAATA
1 AACATGAGTATAGATAATA
*
62086449 AACATGAGTATAGGTAATA
1 AACATGAGTATAGATAATA
62086468 AACA
1 AACA
62086472 CATGTATGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.24
Consensus pattern (19 bp):
AACATGAGTATAGATAATA
Found at i:62096046 original size:40 final size:40
Alignment explanation
Indices: 62096002--62096228 Score: 336
Period size: 40 Copynumber: 5.7 Consensus size: 40
62095992 TCGTAGCTTA
62096002 CGGGTCTTTAAGCCCGGATACAATTCCAGCATGA-AGCCTG
1 CGGGTCTTTAAGCCCGGATACAATTCCAGCAT-ATAGCCTG
*
62096042 CGGGTCTTTAAGCCCAGATA-ACATTCCAGCATATAGCCTG
1 CGGGTCTTTAAGCCCGGATACA-ATTCCAGCATATAGCCTG
*
62096082 CGGGTCTTAAAGCCCGGATA-ACATTCCAGCATATAGCCTG
1 CGGGTCTTTAAGCCCGGATACA-ATTCCAGCATATAGCCTG
* * *
62096122 TGGGTCTTTAAGCCCGGATACAATTCTAGCACGA-AGCCTG
1 CGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTG
*
62096162 CGGGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTA
1 CGGGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTG
62096202 CGGGTCTTTAAGCCCGGATACAATTCC
1 CGGGTCTTTAAGCCCGGATACAATTCC
62096229 TCAAGTATCA
Statistics
Matches: 171, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 166 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CGGGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTG
Found at i:62096228 original size:120 final size:120
Alignment explanation
Indices: 62096003--62096221 Score: 377
Period size: 120 Copynumber: 1.8 Consensus size: 120
62095993 CGTAGCTTAC
*
62096003 GGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCCAGATAACATTC
1 GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATAACATTC
*
62096068 CAGCATATAGCCTGCGGGTCTTAAAGCCCGGATAACATTCCAGCATATAGCCTGT
66 CAGCATATAGCCTACGGGTCTTAAAGCCCGGATAACATTCCAGCATATAGCCTGT
* *
62096123 GGGTCTTTAAGCCCGGATACAATTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT-ACAATT
1 GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATAAC-ATT
*
62096187 CCAGCATATAGCCTACGGGTCTTTAAGCCCGGATA
65 CCAGCATATAGCCTACGGGTCTTAAAGCCCGGATA
62096222 CAATTCCTCA
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
119 2 0.02
120 91 0.98
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (120 bp):
GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATAACATTC
CAGCATATAGCCTACGGGTCTTAAAGCCCGGATAACATTCCAGCATATAGCCTGT
Found at i:62112765 original size:30 final size:30
Alignment explanation
Indices: 62112731--62112790 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
62112721 ATTTAATACG
* *
62112731 AACTTTGGTAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
62112761 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
62112791 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:62113703 original size:39 final size:37
Alignment explanation
Indices: 62113660--62113912 Score: 218
Period size: 40 Copynumber: 6.4 Consensus size: 37
62113650 CCTACGGGAA
* * * *
62113660 TTTAAACCCGGTATAATACTAGCTTGTAGCCTGCAGGTC
1 TTTAAGCCCGG-ATAATTCCAGCATGTAGCCTGC-GGTC
*
62113699 TTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGTTC
1 TTTAAGCCCGGAT--AATTCCAGCATGTAGCCTGCGG-TC
*
62113739 TTTAAGCCCGGATAACATTCCAGCATATAGCCTGCGGGTC
1 TTTAAGCCCGGAT-A-ATTCCAGCATGTAGCCTGC-GGTC
* *
62113779 TTTAAGCCCGGATAACATTCCAACATATAGCCTGCGGGTC
1 TTTAAGCCCGGAT-A-ATTCCAGCATGTAGCCTGC-GGTC
* * *
62113819 TTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGAGTC
1 TTTAAGCCCGGAT--AATTCCAGCATGTAGCCTGCG-GTC
* * * *
62113859 TTTAAGCTCAGATACAATTCTAGCATATAGCCTGCGGGTC
1 TTTAAGCCCGGAT--AATTCCAGCATGTAGCCTGC-GGTC
62113899 TTTAAGCCCGGATA
1 TTTAAGCCCGGATA
62113913 CAATTCCTCA
Statistics
Matches: 184, Mismatches: 22, Indels: 17
0.83 0.10 0.08
Matches are distributed among these distances:
38 3 0.02
39 14 0.08
40 163 0.89
41 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (37 bp):
TTTAAGCCCGGATAATTCCAGCATGTAGCCTGCGGTC
Found at i:62113741 original size:40 final size:40
Alignment explanation
Indices: 62113686--62113919 Score: 323
Period size: 40 Copynumber: 5.8 Consensus size: 40
62113676 TACTAGCTTG
*
62113686 TAGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCATGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAT-A
*
62113727 -AGCCTGCGGTTCTTTAAGCCCGGATA-ACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCATA
*
62113766 TAGCCTGCGGGTCTTTAAGCCCGGATA-ACATTCCAACATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCATA
* *
62113806 TAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TA
* * * *
62113847 -AGCCTGCGAGTCTTTAAGCTCAGATACAATTCTAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATA
62113886 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
62113920 TCAAGTATCA
Statistics
Matches: 173, Mismatches: 15, Indels: 11
0.87 0.08 0.06
Matches are distributed among these distances:
39 3 0.02
40 168 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATA
Found at i:62113919 original size:120 final size:120
Alignment explanation
Indices: 62113686--62113912 Score: 368
Period size: 120 Copynumber: 1.9 Consensus size: 120
62113676 TACTAGCTTG
* * *
62113686 TAGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGTTCTTTAAGCCCGGA
1 TAGCCTGCAGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGTTCTTTAAGCCCAGA
62113751 TAACATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACATA
66 TAACATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACATA
* *
62113806 TAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGAG-TCTTTAAGCTCAG
1 TAGCCTGCAGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCG-GTTCTTTAAGCCCAG
*
62113870 AT-ACAATTCTAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
65 ATAAC-ATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
62113913 CAATTCCTCA
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
119 2 0.02
120 96 0.97
121 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
TAGCCTGCAGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGTTCTTTAAGCCCAGA
TAACATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACATA
Found at i:62117232 original size:43 final size:43
Alignment explanation
Indices: 62117177--62117320 Score: 134
Period size: 44 Copynumber: 3.3 Consensus size: 43
62117167 CCAACGTCCC
* *
62117177 AGACGTCG-TCTTACATGCAATCAAATATCGATGCCACTATCCT
1 AGACGT-GATCTTACATGAAATCAAATATCGATGCCAATATCCT
** * *
62117220 AGACAG-GATCTTACACAAAATCAAATA-CAATGCCAATGTCCT
1 AGAC-GTGATCTTACATGAAATCAAATATCGATGCCAATATCCT
* * *
62117262 AGACGTGGTCTTACATGTAAATCATAAT-TCGATGCCAACATCCC
1 AGACGTGATCTTACATG-AAATCA-AATATCGATGCCAATATCCT
*
62117306 AGACGTGGTCTTACA
1 AGACGTGATCTTACA
62117321 CGATAATACA
Statistics
Matches: 82, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 25 0.30
43 26 0.32
44 30 0.37
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
AGACGTGATCTTACATGAAATCAAATATCGATGCCAATATCCT
Found at i:62125343 original size:29 final size:30
Alignment explanation
Indices: 62125286--62125343 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
62125276 TGAAAGGTGA
* * *
62125286 GTAAAAGTTTTGGAGGGAAAGTGAGAAGGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
62125316 GTAAAAGTTTT-GAAGGAAAGTAAAAAGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGG
62125344 TTTGAGAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (30 bp):
GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
Found at i:62125403 original size:9 final size:9
Alignment explanation
Indices: 62125385--62125430 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
62125375 TATAGTTTGA
*
62125385 TATTCAAAT
1 TATTCGAAT
62125394 TATTCGAAT
1 TATTCGAAT
62125403 TATTCGAAT
1 TATTCGAAT
*
62125412 TATTCGAGT
1 TATTCGAAT
*
62125421 TTTTCGAAT
1 TATTCGAAT
62125430 T
1 T
62125431 CGAAAACTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (9 bp):
TATTCGAAT
Found at i:62131218 original size:240 final size:240
Alignment explanation
Indices: 62130781--62131388 Score: 1119
Period size: 240 Copynumber: 2.5 Consensus size: 240
62130771 TTTAATGAAA
* *
62130781 TAAAATAGGAAAAATGAACCAAAAATCAGCCATTTTCTCCCTTGTACCAGCCGAAACTCTCAAGC
1 TAAAATGGGAAAATTGAACCAAAAATCAGCCATTTTCTCCCTTGTACCAGCCGAAACTCTCAAGC
62130846 CCACCATAGTTAGGGTTTCCAAGCTTGTTTAAGCTCAATAGTAAGTGCTCTGAAGCCCCGTTTTA
66 CCACCATAGTTAGGGTTTCCAAGCTTGTTTAAGCTCAATAGTAAGTGCTCTGAAGCCCCGTTTTA
62130911 GATTATAAATTAGAAGGTCTTGGTGAGTAATTTTCCCAATTTCTAAGTTTTTGGACAAAAATGGG
131 GATTATAAATTAGAAGGTCTTGGTGAGTAATTTTCCCAATTTCTAAGTTTTTGGACAAAAATGGG
62130976 CTTGCATGGATGAAATTTTAAAGAAAGGGCTTAAGGGTATTTTCG
196 CTTGCATGGATGAAATTTTAAAGAAAGGGCTTAAGGGTATTTTCG
62131021 TAAAATGGGAAAATTGAACCAAAAATCAGCCATTTTCTCCCTTGTACCAGCCGAAACTCTCAAGC
1 TAAAATGGGAAAATTGAACCAAAAATCAGCCATTTTCTCCCTTGTACCAGCCGAAACTCTCAAGC
62131086 CCACCATAGTTAGGGTTTCCAAGCTTGTTTAAGCTCAATAGTAAGTGCTCTGAAGCCCCGTTTTA
66 CCACCATAGTTAGGGTTTCCAAGCTTGTTTAAGCTCAATAGTAAGTGCTCTGAAGCCCCGTTTTA
62131151 GATTATAAATTAGAAGGTCTTGGTGAGTAATTTTCCCAATTTCTAAGTTTTTGGACAAAAATGGG
131 GATTATAAATTAGAAGGTCTTGGTGAGTAATTTTCCCAATTTCTAAGTTTTTGGACAAAAATGGG
62131216 CTTGCATGGATGAAATTTTAAAGAAAGGGCTTAAGGGTATTTTCG
196 CTTGCATGGATGAAATTTTAAAGAAAGGGCTTAAGGGTATTTTCG
*
62131261 TAAAATGGGAAAATTGAACCAAAAATCAGCCATTTTCTCCCTTGTACCAGCCAAAACTCTCAAGC
1 TAAAATGGGAAAATTGAACCAAAAATCAGCCATTTTCTCCCTTGTACCAGCCGAAACTCTCAAGC
* * * * * **
62131326 CCTCCATAGCTAGGGTTTCCAAGCTT-TTCAAGCTCAATAGTACGTTCTCCCAAGCCCCGTTTT
66 CCACCATAGTTAGGGTTTCCAAGCTTGTTTAAGCTCAATAGTAAGTGCTCTGAAGCCCCGTTTT
62131389 TAATGTTCTT
Statistics
Matches: 358, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
239 32 0.09
240 326 0.91
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (240 bp):
TAAAATGGGAAAATTGAACCAAAAATCAGCCATTTTCTCCCTTGTACCAGCCGAAACTCTCAAGC
CCACCATAGTTAGGGTTTCCAAGCTTGTTTAAGCTCAATAGTAAGTGCTCTGAAGCCCCGTTTTA
GATTATAAATTAGAAGGTCTTGGTGAGTAATTTTCCCAATTTCTAAGTTTTTGGACAAAAATGGG
CTTGCATGGATGAAATTTTAAAGAAAGGGCTTAAGGGTATTTTCG
Found at i:62138728 original size:43 final size:43
Alignment explanation
Indices: 62138680--62138778 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 43
62138670 GAACTACAGA
* *
62138680 CTTCACGCGGCATG-GACACACGCCCATGTCCTAAGGCCGTGTC
1 CTTCACACGGC-TGAGACACACGCCCATGTCCTAAGGCCATGTC
*
62138723 CTTCACACGGCTGAGACACACGCCTATGTCCTAAGGCCATGTC
1 CTTCACACGGCTGAGACACACGCCCATGTCCTAAGGCCATGTC
62138766 CTTCACACGGCTG
1 CTTCACACGGCTG
62138779 TGTCTCTGCC
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 2 0.04
43 50 0.96
ACGTcount: A:0.20, C:0.36, G:0.23, T:0.20
Consensus pattern (43 bp):
CTTCACACGGCTGAGACACACGCCCATGTCCTAAGGCCATGTC
Found at i:62140786 original size:13 final size:13
Alignment explanation
Indices: 62140770--62140806 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
62140760 GTAATTTTGA
62140770 TGATGATTTTTCT
1 TGATGATTTTTCT
62140783 TGATGATTTTTCT
1 TGATGATTTTTCT
62140796 TGATGACTTTT
1 TGATGA-TTTT
62140807 GCATTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 19 0.83
14 4 0.17
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.59
Consensus pattern (13 bp):
TGATGATTTTTCT
Found at i:62140787 original size:16 final size:16
Alignment explanation
Indices: 62140766--62140801 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 16
62140756 GTAAGTAATT
62140766 TTGATGATGATTTTTC
1 TTGATGATGATTTTTC
62140782 -T--TGATGATTTTTC
1 TTGATGATGATTTTTC
62140795 TTGATGA
1 TTGATGA
62140802 CTTTTGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 6
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.71
14 1 0.06
15 1 0.06
16 3 0.18
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (16 bp):
TTGATGATGATTTTTC
Found at i:62143274 original size:25 final size:24
Alignment explanation
Indices: 62143208--62143274 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 24
62143198 GATACCAAAC
62143208 TTTCATTGTTATCCATTTTTGACCT
1 TTTCATTGTTATCC-TTTTTGACCT
* * *
62143233 TTTCAATGATATTCTTTTTGACCT
1 TTTCATTGTTATCCTTTTTGACCT
62143257 TTTCACTTGTTATCCTTT
1 TTTCA-TTGTTATCCTTT
62143275 CAGGATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 15 0.43
25 20 0.57
ACGTcount: A:0.16, C:0.19, G:0.07, T:0.57
Consensus pattern (24 bp):
TTTCATTGTTATCCTTTTTGACCT
Found at i:62144867 original size:13 final size:13
Alignment explanation
Indices: 62144844--62144912 Score: 70
Period size: 13 Copynumber: 5.3 Consensus size: 13
62144834 ACATATCTAT
*
62144844 ATTT-ATATAAAT
1 ATTTCATATAAAC
*
62144856 ATTTCTTATAAAC
1 ATTTCATATAAAC
*
62144869 ATTTCATATAACC
1 ATTTCATATAAAC
*
62144882 ATTTCATAT-ATC
1 ATTTCATATAAAC
62144894 TATTTCCATATAAAC
1 -ATTT-CATATAAAC
62144909 ATTT
1 ATTT
62144913 TGTATATCTA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
12 6 0.13
13 30 0.64
14 9 0.19
15 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTCATATAAAC
Found at i:62144893 original size:53 final size:53
Alignment explanation
Indices: 62144830--62144938 Score: 125
Period size: 53 Copynumber: 2.1 Consensus size: 53
62144820 GAATGTCCCT
* *
62144830 TTTCACATATCTATATT-TATATAAATATTTCT-TATAAAC-ATTTCATATAACCA
1 TTTCACATATCTAT-TTCCATATAAACATTT-TGTAT-AACTATTTCATATAACCA
* * *
62144883 TTTCATATATCTATTTCCATATAAACATTTTGTATATCTATTTCATATTACCA
1 TTTCACATATCTATTTCCATATAAACATTTTGTATAACTATTTCATATAACCA
62144936 TTT
1 TTT
62144939 TCGTTTACTC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
52 5 0.10
53 43 0.90
ACGTcount: A:0.35, C:0.16, G:0.01, T:0.49
Consensus pattern (53 bp):
TTTCACATATCTATTTCCATATAAACATTTTGTATAACTATTTCATATAACCA
Found at i:62144905 original size:14 final size:13
Alignment explanation
Indices: 62144856--62144938 Score: 67
Period size: 13 Copynumber: 6.3 Consensus size: 13
62144846 TTATATAAAT
* *
62144856 ATTTCTTATAAAC
1 ATTTCATATAACC
62144869 ATTTCATATAACC
1 ATTTCATATAACC
* *
62144882 ATTTCATATATCT
1 ATTTCATATAACC
*
62144895 ATTTCCATATAAAC
1 ATTT-CATATAACC
** * *
62144909 ATTTTGTATATCT
1 ATTTCATATAACC
*
62144922 ATTTCATATTACC
1 ATTTCATATAACC
62144935 ATTT
1 ATTT
62144939 TCGTTTACTC
Statistics
Matches: 52, Mismatches: 17, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
13 42 0.81
14 10 0.19
ACGTcount: A:0.34, C:0.17, G:0.01, T:0.48
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:62145026 original size:25 final size:25
Alignment explanation
Indices: 62144998--62145057 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
62144988 ATGTTGGAAC
* *
62144998 AATGCTCACACAAGTTGTGATTGTA
1 AATGCTCACACAAGCTGTGACTGTA
*
62145023 AATGCTCACACGAGCTGTGACTGTA
1 AATGCTCACACAAGCTGTGACTGTA
*
62145048 AATGCACACA
1 AATGCTCACA
62145058 TGAGTTGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (25 bp):
AATGCTCACACAAGCTGTGACTGTA
Found at i:62145709 original size:14 final size:14
Alignment explanation
Indices: 62145677--62145709 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
62145667 AACATTTCAA
*
62145677 GCTCAATAGTAAGT
1 GCTCCATAGTAAGT
62145691 GCTCCATAGTAAGT
1 GCTCCATAGTAAGT
62145705 GCTCC
1 GCTCC
62145710 CTAGCCCCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (14 bp):
GCTCCATAGTAAGT
Found at i:62147262 original size:30 final size:30
Alignment explanation
Indices: 62147226--62147284 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
62147216 CATTAGTTAG
62147226 ACAATGTAAGGGCTTGAATGATATACCTAA
1 ACAATGTAAGGGCTTGAATGATATACCTAA
62147256 ACAATGTAAGGGCTTGAATGATATACCTA
1 ACAATGTAAGGGCTTGAATGATATACCTA
62147285 TTCTGTAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (30 bp):
ACAATGTAAGGGCTTGAATGATATACCTAA
Found at i:62147611 original size:168 final size:168
Alignment explanation
Indices: 62147333--62147668 Score: 654
Period size: 168 Copynumber: 2.0 Consensus size: 168
62147323 AGGTTATGAG
62147333 GTATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTACCAGACAAATTATCAACAATG
1 GTATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTACCAGACAAATTATCAACAATG
62147398 CAAACCTGTCTCATTGATTTTCCATAAGAGCTCTTATAAATTTCCAAAATGACTAACTATCAAAA
66 CAAACCTGTCTCATTGATTTTCCATAAGAGCTCTTATAAATTTCCAAAATGACTAACTATCAAAA
62147463 CACAACCGAATATCTAATAACAAAATAACTACTATCAA
131 CACAACCGAATATCTAATAACAAAATAACTACTATCAA
62147501 GTATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTACCAGACAAATTATCAACAATG
1 GTATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTACCAGACAAATTATCAACAATG
62147566 CAAACCTGTCTCATTGATTTTCCATAAGAGCTCTTATAAATTTCCAAAATGACTAACTATCAAAA
66 CAAACCTGTCTCATTGATTTTCCATAAGAGCTCTTATAAATTTCCAAAATGACTAACTATCAAAA
* *
62147631 CATAACCGAATATCTAATAACAAATTAACTACTATCAA
131 CACAACCGAATATCTAATAACAAAATAACTACTATCAA
62147669 TTTATAACTA
Statistics
Matches: 166, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
168 166 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (168 bp):
GTATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTACCAGACAAATTATCAACAATG
CAAACCTGTCTCATTGATTTTCCATAAGAGCTCTTATAAATTTCCAAAATGACTAACTATCAAAA
CACAACCGAATATCTAATAACAAAATAACTACTATCAA
Found at i:62149313 original size:39 final size:39
Alignment explanation
Indices: 62149269--62150130 Score: 1688
Period size: 39 Copynumber: 22.1 Consensus size: 39
62149259 AATTATATTA
* * * *
62149269 CCAGCACAAAGCCTGCAGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149308 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149347 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149386 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149425 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149464 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149503 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149542 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149581 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149620 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149659 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149698 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149737 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149776 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149815 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149854 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149893 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149932 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62149971 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62150010 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62150049 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62150088 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
62150127 CCAG
1 CCAG
62150131 TGTCTTGCTT
Statistics
Matches: 819, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 819 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:62155625 original size:39 final size:39
Alignment explanation
Indices: 62155581--62155888 Score: 526
Period size: 39 Copynumber: 7.9 Consensus size: 39
62155571 ATGCAAGACA
62155581 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
62155620 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
62155659 TTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
62155698 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
62155737 TTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
62155776 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
62155815 TTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
62155854 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
62155889 TGTACTGATA
Statistics
Matches: 250, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 250 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:62155711 original size:78 final size:78
Alignment explanation
Indices: 62155582--62155888 Score: 587
Period size: 78 Copynumber: 3.9 Consensus size: 78
62155572 TGCAAGACAC
*
62155582 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCC
1 TGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCC
62155647 GCAGGCTTCGTGT
66 GCAGGCTTCGTGT
62155660 TGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCC
1 TGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCC
62155725 GCAGGCTTCGTGT
66 GCAGGCTTCGTGT
62155738 TGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCC
1 TGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCC
62155803 GCAGGCTTCGTGT
66 GCAGGCTTCGTGT
* *
62155816 TGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCC
1 TGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCC
62155881 GCAGGCTT
66 GCAGGCTT
62155889 TGTACTGATA
Statistics
Matches: 226, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 226 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (78 bp):
TGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCC
GCAGGCTTCGTGT
Found at i:62165502 original size:23 final size:23
Alignment explanation
Indices: 62165476--62165519 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
62165466 TCCTTATATG
62165476 GGTTGGTTCCATTATATAGATCC
1 GGTTGGTTCCATTATATAGATCC
62165499 GGTTGGTTCCATTATATAGAT
1 GGTTGGTTCCATTATATAGAT
62165520 GCTCTCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.41
Consensus pattern (23 bp):
GGTTGGTTCCATTATATAGATCC
Found at i:62167607 original size:35 final size:35
Alignment explanation
Indices: 62167561--62167627 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
62167551 ATATAGATTA
* *
62167561 TACAATGAATACTTGGAACTATTTCGAGGATCTTG
1 TACAATAAATACTTAGAACTATTTCGAGGATCTTG
*
62167596 TACAATAAATACTTAGAAGTATTTCGAGGATC
1 TACAATAAATACTTAGAACTATTTCGAGGATC
62167628 GTACCCAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (35 bp):
TACAATAAATACTTAGAACTATTTCGAGGATCTTG
Found at i:62168745 original size:22 final size:22
Alignment explanation
Indices: 62168720--62168773 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
62168710 ACAGCTCAAG
*
62168720 GCTGTAAACAGGACATCACATA
1 GCTGTAAACAGGACAACACATA
62168742 GCTGTAAACAGGACAACACATA
1 GCTGTAAACAGGACAACACATA
*
62168764 GCCGTAAACA
1 GCTGTAAACA
62168774 TCACAGCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.43, C:0.24, G:0.19, T:0.15
Consensus pattern (22 bp):
GCTGTAAACAGGACAACACATA
Found at i:62169240 original size:41 final size:41
Alignment explanation
Indices: 62169182--62169345 Score: 247
Period size: 41 Copynumber: 4.0 Consensus size: 41
62169172 TAAAAGCCAC
* * *
62169182 CGGTGGATCCACGGTCGTCAAGCAGCCATACGATCCTTAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
* * *
62169223 CGGTGGATCCACAGTCGTTAACCAACCATGCGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
*
62169264 CGGTGGATCCACAGTTGTCAAGCAACCATACGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
**
62169305 CGGTGGATCCACAGTCGTCAAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
62169346 TTCTTCCTCC
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 110 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (41 bp):
CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
Found at i:62169635 original size:27 final size:27
Alignment explanation
Indices: 62169605--62169710 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
62169595 GGTAAATCCA
62169605 CAAACCAAGGTTATTT-TGATAATTTTG
1 CAAACCAAGG-TATTTCTGATAATTTTG
62169632 CAAACCAAGGTATTTCTG-TAATTTTG
1 CAAACCAAGGTATTTCTGATAATTTTG
* * *
62169658 TAAATCAAGGGTATTTCT-ATAATTTTC
1 CAAACCAA-GGTATTTCTGATAATTTTG
* *
62169685 CAAATCAAAGGTATTTCAG-TAATTTT
1 CAAA-CCAAGGTATTTCTGATAATTTT
62169711 CTAAATCAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
26 19 0.28
27 46 0.69
28 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (27 bp):
CAAACCAAGGTATTTCTGATAATTTTG
Found at i:62169680 original size:53 final size:54
Alignment explanation
Indices: 62169610--62169764 Score: 161
Period size: 54 Copynumber: 2.9 Consensus size: 54
62169600 ATCCACAAAC
* * * * *
62169610 CAAGGTTATTTTGATAATTTTGCAAA-CCAAGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTTGATAATTTTCCAAATCAAAGGTATTTCAGTAATTTTCTAAAT
62169663 CAAGGGTATTTCT-ATAATTTTCCAAATCAAAGGTATTTCAGTAATTTTCTAAAT
1 CAAGGGTATTT-TGATAATTTTCCAAATCAAAGGTATTTCAGTAATTTTCTAAAT
* * * * * ** * *
62169717 CAGGGGTGTTTTGGTAATTTTACAGATTGAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGATAATTTTCCAAATCAAAGGTATTTCAGTAATTTT
62169765 AGAGGGACCC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 23 0.27
54 62 0.73
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (54 bp):
CAAGGGTATTTTGATAATTTTCCAAATCAAAGGTATTTCAGTAATTTTCTAAAT
Found at i:62169733 original size:27 final size:26
Alignment explanation
Indices: 62169610--62169764 Score: 109
Period size: 27 Copynumber: 5.8 Consensus size: 26
62169600 ATCCACAAAC
* *
62169610 CAAGGTTATTTTGATAATTTTGC-AAAC
1 CAAGGGTATTTTG-TAATTTT-CTAAAT
*
62169637 CAA-GGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGTAATTTTCTAAAT
* *
62169663 CAAGGGTATTTCTATAATTTTCCAAAT
1 CAAGGGTATTT-TGTAATTTTCTAAAT
* *
62169690 CAAAGGTATTTCAGTAATTTTCTAAAT
1 CAAGGGTATTT-TGTAATTTTCTAAAT
* * *
62169717 CAGGGGTGTTTTGGTAATTTTAC-AGAT
1 CAAGGGTATTTT-GTAATTTT-CTAAAT
**
62169744 TGAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTT-GTAATTTT
62169765 AGAGGGACCC
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
26 19 0.18
27 83 0.81
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (26 bp):
CAAGGGTATTTTGTAATTTTCTAAAT
Found at i:62171672 original size:80 final size:79
Alignment explanation
Indices: 62171588--62171759 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
62171578 GGACTAAGAT
*
62171588 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
62171652 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
62171668 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
62171733 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
62171747 CCGAAGGCATTTG
1 CCGAAGGCATTTG
62171760 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:62171739 original size:39 final size:39
Alignment explanation
Indices: 62171535--62171757 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
62171525 TTGAATGCTG
* * * * *
62171535 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
62171575 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
62171614 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
62171655 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
62171695 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
62171734 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
62171758 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:62171777 original size:79 final size:80
Alignment explanation
Indices: 62171615--62171792 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
62171605 AGATACAAAT
* * * *
62171615 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
62171680 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
62171695 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
62171759 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
62171774 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62171793 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:62177314 original size:80 final size:79
Alignment explanation
Indices: 62177230--62177401 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
62177220 GGACTAAGAT
*
62177230 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
62177294 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
62177310 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
62177375 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
62177389 CCGAAGGCATTTG
1 CCGAAGGCATTTG
62177402 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:62177381 original size:39 final size:39
Alignment explanation
Indices: 62177177--62177399 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
62177167 TTGAATGCTG
* * * * *
62177177 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
62177217 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
62177256 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
62177297 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
62177337 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
62177376 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
62177400 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 104 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:62177419 original size:79 final size:80
Alignment explanation
Indices: 62177257--62177434 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
62177247 AGATACAAAT
* * * *
62177257 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
62177322 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
62177337 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
62177401 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
62177416 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62177435 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:62179152 original size:27 final size:26
Alignment explanation
Indices: 62179074--62179167 Score: 98
Period size: 27 Copynumber: 3.5 Consensus size: 26
62179064 TAATCGATTC
*
62179074 AATCAGGGATATTTTGGTAATTTTACA
1 AATCAGGG-TATTTTGGTAATTTTGCA
* * *
62179101 AAGCAGGGGTATTTTGATAATTTTGCT
1 AATCA-GGGTATTTTGGTAATTTTGCA
*
62179128 AATCGAGGGTATTTTGGTAATTTTGTA
1 AATC-AGGGTATTTTGGTAATTTTGCA
*
62179155 AACCAAGGGTATT
1 AATC-AGGGTATT
62179168 CAGTAATTCT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 51 0.93
28 4 0.07
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.39
Consensus pattern (26 bp):
AATCAGGGTATTTTGGTAATTTTGCA
Found at i:62179198 original size:27 final size:27
Alignment explanation
Indices: 62179166--62179240 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
62179156 ACCAAGGGTA
62179166 TTCAGTAATTCTA-CCTTACAGGGGCAT
1 TTCAGTAATTCTATCC-TACAGGGGCAT
* *
62179193 TTCAGTAATTCTATCCTATAGGGGTAT
1 TTCAGTAATTCTATCCTACAGGGGCAT
* *
62179220 TTCAGTAATACTAGCCTACAG
1 TTCAGTAATTCTATCCTACAG
62179241 ATATGAGATT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 40 0.95
28 2 0.05
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
TTCAGTAATTCTATCCTACAGGGGCAT
Found at i:62180957 original size:32 final size:32
Alignment explanation
Indices: 62180921--62180985 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
62180911 CAGACAAAAA
62180921 TAACCCCGAAATAATTGGGCAGCACGTTGGCC
1 TAACCCCGAAATAATTGGGCAGCACGTTGGCC
*
62180953 TAACCCCGAAATACTTGGGCAGCACGTTGGCC
1 TAACCCCGAAATAATTGGGCAGCACGTTGGCC
62180985 T
1 T
62180986 TGTGTTATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (32 bp):
TAACCCCGAAATAATTGGGCAGCACGTTGGCC
Found at i:62185567 original size:20 final size:20
Alignment explanation
Indices: 62185530--62185568 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
62185520 AAACACGCAA
**
62185530 TTAAAAAGAAAATTTAAAAT
1 TTAAAAAGAAAAACTAAAAT
*
62185550 TTAAAAATAAAAACTAAAA
1 TTAAAAAGAAAAACTAAAA
62185569 ACTAAAAGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
TTAAAAAGAAAAACTAAAAT
Found at i:62187221 original size:44 final size:42
Alignment explanation
Indices: 62187151--62187309 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
62187141 TAGATGTTTC
* * *
62187151 CGTGTAAGACCACGTCTGGGATATTGGCATCG-ACTTATGATTT
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGTA-TT-TGATTT
* *
62187194 ATGTGTAAGACCATGTCTATGACATTGGCATCGTATTTGATTT
1 -CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTT
* * * * *
62187237 CGTGTAAGACCCTGTCTGGGATAGTGGCATCAATATTTG-TTT
1 CGTGTAAGACCATGTCTAGGACATTGGCATC-GTATTTGATTT
* ** * *
62187279 ACATGTAAGACCACATCTGGGACGTTGGCAT
1 -CGTGTAAGACCATGTCTAGGACATTGGCAT
62187310 TGTAGGAGCT
Statistics
Matches: 93, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 28 0.30
43 35 0.38
44 29 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTT
Found at i:62187253 original size:42 final size:44
Alignment explanation
Indices: 62187151--62187267 Score: 116
Period size: 44 Copynumber: 2.7 Consensus size: 44
62187141 TAGATGTTTC
* *
62187151 CGTGTAAGACCAC-GTCTGGGATATTGGCATCGACTTATGATTTA
1 CGTGTAAGACC-CTGTCTAGGACATTGGCATCGACTTATGATTTA
* * *
62187195 TGTGTAAGACCATGTCTATGACATTGGCATCGTA-TT-TGATTT-
1 CGTGTAAGACCCTGTCTAGGACATTGGCATCG-ACTTATGATTTA
* * *
62187237 CGTGTAAGACCCTGTCTGGGATAGTGGCATC
1 CGTGTAAGACCCTGTCTAGGACATTGGCATC
62187268 AATATTTGTT
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.42
43 6 0.10
44 28 0.47
45 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (44 bp):
CGTGTAAGACCCTGTCTAGGACATTGGCATCGACTTATGATTTA
Found at i:62187543 original size:20 final size:21
Alignment explanation
Indices: 62187500--62187547 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
62187490 AAAATGTGCT
62187500 ATATGTGTAAATGAATTGAGA
1 ATATGTGTAAATGAATTGAGA
*
62187521 ATATGTG-AAATGTATATGA-A
1 ATATGTGTAAATGAAT-TGAGA
62187541 ATATGTG
1 ATATGTG
62187548 GTATGAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (21 bp):
ATATGTGTAAATGAATTGAGA
Found at i:62208190 original size:43 final size:43
Alignment explanation
Indices: 62208104--62208216 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 43
62208094 TATCGACTTA
*
62208104 TGATTTACGTGTAAGACCATGTCTGGGACATCGCCATCGTATT
1 TGATTTACGTGTAAGACCATGTCTGGGACATCGCCATCATATT
* * * *
62208147 TGATTT-CGTGTGAGACCCTGTTTGGGACAGT-GGCATCAATATT
1 TGATTTACGTGTAAGACCATGTCTGGGACA-TCGCCATC-ATATT
*
62208190 T-ATTTACATGTAAGACCATGTCTGGGA
1 TGATTTACGTGTAAGACCATGTCTGGGA
62208217 TGTTGGCATT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 29 0.50
43 29 0.50
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCATGTCTGGGACATCGCCATCATATT
Found at i:62208224 original size:43 final size:43
Alignment explanation
Indices: 62208104--62208225 Score: 117
Period size: 43 Copynumber: 2.9 Consensus size: 43
62208094 TATCGACTTA
* * *
62208104 TGATTTACGTGTAAGACCATGTCTGGGACA-TCGCCATCGTATT
1 TGATTTACGTGTAAGACCATGTCTGGGA-AGTTGGCATCATATT
* * *
62208147 TGATTT-CGTGTGAGACCCTGTTTGGGACAG-TGGCATCAATATT
1 TGATTTACGTGTAAGACCATGTCTGGGA-AGTTGGCATC-ATATT
* *
62208190 T-ATTTACATGTAAGACCATGTCTGGGATGTTGGCAT
1 TGATTTACGTGTAAGACCATGTCTGGGAAGTTGGCAT
62208226 TGTAAGAGCT
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCATGTCTGGGAAGTTGGCATCATATT
Found at i:62211360 original size:26 final size:26
Alignment explanation
Indices: 62211331--62211382 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
62211321 AACGGCAATT
*
62211331 AAATGCTA-AATTTATATGCTGTTATG
1 AAATGCTAGAATTTATAT-ATGTTATG
*
62211357 AAATGTTAGAATTTATATATGTTATG
1 AAATGCTAGAATTTATATATGTTATG
62211383 GCCAAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.44
Consensus pattern (26 bp):
AAATGCTAGAATTTATATATGTTATG
Found at i:62211567 original size:44 final size:44
Alignment explanation
Indices: 62211517--62211614 Score: 178
Period size: 44 Copynumber: 2.2 Consensus size: 44
62211507 TATATGTGTG
62211517 CGAGTAAGACCATGGCATCGATATGTCATTCCGATATGTGTTTA
1 CGAGTAAGACCATGGCATCGATATGTCATTCCGATATGTGTTTA
**
62211561 CGAGTAAGAATATGGCATCGATATGTCATTCCGATATGTGTTTA
1 CGAGTAAGACCATGGCATCGATATGTCATTCCGATATGTGTTTA
62211605 CGAGTAAGAC
1 CGAGTAAGAC
62211615 TATGTTTGGG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (44 bp):
CGAGTAAGACCATGGCATCGATATGTCATTCCGATATGTGTTTA
Found at i:62214574 original size:60 final size:60
Alignment explanation
Indices: 62214495--62214715 Score: 169
Period size: 60 Copynumber: 3.7 Consensus size: 60
62214485 CGACTAATGG
* * * * * **
62214495 AAAGTGATTGCTTCAGCTATCGAATTATGAAAAGCGATGGTGACGACCATCGGA-CACTGA
1 AAAGAGATAGCTTCGGCTATCGAATTATGAAAAGCGATAGTGACAACCATCAAATCA-TGA
* * *
62214555 AAAGAGATAGCTTCGGCTATCAAAATTATGAAAAGGGATAGTGACAACCATCAAATTATGA
1 AAAGAGATAGCTTCGGCTATC-GAATTATGAAAAGCGATAGTGACAACCATCAAATCATGA
* * * * * ** * * *
62214616 AAA-AGGATAGCTTTGGCTATTGAATTATGAAAAGGGACAGCT-TCGGCTATCGAATTATGA
1 AAAGA-GATAGCTTCGGCTATCGAATTATGAAAAGCGATAG-TGACAACCATCAAATCATGA
* * * *
62214676 AAAGGGATAGTTTCAGCTATCGAATTATGAAAAGGGATAG
1 AAAGAGATAGCTTCGGCTATCGAATTATGAAAAGCGATAG
62214716 CTTCGACTAT
Statistics
Matches: 131, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
60 82 0.63
61 48 0.37
62 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (60 bp):
AAAGAGATAGCTTCGGCTATCGAATTATGAAAAGCGATAGTGACAACCATCAAATCATGA
Found at i:62214642 original size:30 final size:30
Alignment explanation
Indices: 62214552--62214780 Score: 219
Period size: 30 Copynumber: 7.6 Consensus size: 30
62214542 CATCGGACAC
* *
62214552 TGAAAAGAGATAGCTTCGGCTATCAAAATTA
1 TGAAAAGGGATAGCTTCGGCTATC-GAATTA
* ** * *
62214583 TGAAAAGGGATAG-TGACAACCATCAAATTA
1 TGAAAAGGGATAGCT-TCGGCTATCGAATTA
* * *
62214613 TGAAAAAGGATAGCTTTGGCTATTGAATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
*
62214643 TGAAAAGGGACAGCTTCGGCTATCGAATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
* *
62214673 TGAAAAGGGATAGTTTCAGCTATCGAATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
*
62214703 TGAAAAGGGATAGCTTCGACTATCGAATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
** * * *
62214733 TGAACTGAGTTAGCTTTGGCTATCG-ATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
* * *
62214762 GTAAAAAGGAATAACTTCG
1 -TGAAAAGGGATAGCTTCG
62214781 TGTGAGATTC
Statistics
Matches: 158, Mismatches: 37, Indels: 7
0.78 0.18 0.03
Matches are distributed among these distances:
29 4 0.03
30 136 0.86
31 18 0.11
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.28
Consensus pattern (30 bp):
TGAAAAGGGATAGCTTCGGCTATCGAATTA
Found at i:62214748 original size:90 final size:90
Alignment explanation
Indices: 62214552--62214758 Score: 261
Period size: 90 Copynumber: 2.3 Consensus size: 90
62214542 CATCGGACAC
*
62214552 TGAAAAGAGATAGCTTCGGCTATCAAAATTATGAAAAGGGATAGTGACAACCATCAAATTATGAA
1 TGAAAAGAGATAGCTTCGGCTATC-GAATTATGAAAAGGGATAGTGACAACCATCAAATTATGAA
* * *
62214617 AAAGGATAGCTTTGGCTATTGAATTA
65 AAAGGATAGCTTCGACTATCGAATTA
* * ** * * *
62214643 TGAAAAGGGACAGCTTCGGCTATCGAATTATGAAAAGGGATAGTTTCAGCTATCGAATTATGAAA
1 TGAAAAGAGATAGCTTCGGCTATCGAATTATGAAAAGGGATAGTGACAACCATCAAATTATGAAA
*
62214708 AGGGATAGCTTCGACTATCGAATTA
66 AAGGATAGCTTCGACTATCGAATTA
** * *
62214733 TGAACTGAGTTAGCTTTGGCTATCGA
1 TGAAAAGAGATAGCTTCGGCTATCGA
62214759 TTAGTAAAAA
Statistics
Matches: 98, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
90 76 0.78
91 22 0.22
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (90 bp):
TGAAAAGAGATAGCTTCGGCTATCGAATTATGAAAAGGGATAGTGACAACCATCAAATTATGAAA
AAGGATAGCTTCGACTATCGAATTA
Found at i:62226336 original size:55 final size:55
Alignment explanation
Indices: 62226270--62226379 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
62226260 ACAGAAACCC
* *
62226270 ATCCAAAGCCCAAATCAGCTCGAGCCCATTGGGCCTAAGCCCTATTTAGATCACA
1 ATCCAAAGCCCAAATCAGCTCGAGCCAATTGGGCCTAAGCCCTATTCAGATCACA
62226325 ATCCAAAGCCCAAATCAGCTCGAGCCAATTGGGCCTAAGCCCTATTCAGATCACA
1 ATCCAAAGCCCAAATCAGCTCGAGCCAATTGGGCCTAAGCCCTATTCAGATCACA
62226380 GTACACAGTG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.32, C:0.33, G:0.16, T:0.19
Consensus pattern (55 bp):
ATCCAAAGCCCAAATCAGCTCGAGCCAATTGGGCCTAAGCCCTATTCAGATCACA
Found at i:62230112 original size:25 final size:25
Alignment explanation
Indices: 62230076--62230128 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
62230066 ATTCTAACAT
*
62230076 GAGTTGTAAATCTGAATGCTCACAC
1 GAGTTGTAAATCAGAATGCTCACAC
*
62230101 GAGTTGTGAATCAGAATGCTCACAC
1 GAGTTGTAAATCAGAATGCTCACAC
62230126 GAG
1 GAG
62230129 CTATGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (25 bp):
GAGTTGTAAATCAGAATGCTCACAC
Found at i:62230135 original size:25 final size:25
Alignment explanation
Indices: 62230084--62230135 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
62230074 ATGAGTTGTA
* * *
62230084 AATCTGAATGCTCACACGAGTTGTG
1 AATCAGAATGCTCACACGAGCTATG
62230109 AATCAGAATGCTCACACGAGCTATG
1 AATCAGAATGCTCACACGAGCTATG
62230134 AA
1 AA
62230136 AATGGGCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (25 bp):
AATCAGAATGCTCACACGAGCTATG
Found at i:62232727 original size:47 final size:47
Alignment explanation
Indices: 62232665--62233287 Score: 1047
Period size: 47 Copynumber: 13.3 Consensus size: 47
62232655 CCCTTCGGGA
* *
62232665 CTTA-CACATTTATACACTTTCACATCCATCACATTGGCCA-TTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTT-GGC
* * * *
62232711 CTTATCACATATATACACATTCACATCCATCACATCGGCCA-TTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTT-GGC
* * * * * *
62232758 CTTATCTCATATACACACTTTCACTTTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
* * *
62232805 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
62232852 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
62232899 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
62232946 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
62232993 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
62233040 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
62233087 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
62233134 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
62233181 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
*
62233228 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTT-GGC
62233275 CTTATCACATATA
1 CTTATCACATATA
62233288 CATATCTTGT
Statistics
Matches: 551, Mismatches: 23, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
46 6 0.01
47 544 0.99
48 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCAGTTGGC
Found at i:62243070 original size:49 final size:49
Alignment explanation
Indices: 62242994--62243131 Score: 156
Period size: 49 Copynumber: 2.8 Consensus size: 49
62242984 GCACATCAAA
* * * *
62242994 GTCGATGCCATGTACTAGACAGGTCTTACACTGACTTTCATATATTGAG-
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GT
* * *
62243043 G-CTGATGTCGTGTCCCAGACAGGTCTTACACT-AGCTCTCATCTATCGGT
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGGT
*
62243092 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACACTCA
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCA
62243132 AGAAGCTGAC
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
48 3 0.04
49 69 0.93
50 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
Found at i:62243250 original size:46 final size:45
Alignment explanation
Indices: 62243053--62243310 Score: 143
Period size: 46 Copynumber: 5.6 Consensus size: 45
62243043 GCTGATGTCG
* * *
62243053 TGTCCCAGACAGGTCTTACACTAGCTCTCATCTA-TCGGTGTCGATGCCA
1 TGTCCCAGACATGTCTTACACTAGCTCTCAT-AAGT--G-GCCGATG-CA
* * ** * *
62243102 TGTCCCAGACAGGTCTTACACT-GACACTC--AAGAAGCTGACGCCA
1 TGTCCCAGACATGTCTTACACTAG-CTCTCATAAGTGGCCGATG-CA
* * * * * *
62243146 TGTCCCAGAC-TGGTCTTACACTAGTTTTTATATCTCGAGGCTGATGCA
1 TGTCCCAGACAT-GTCTTACACTAGCTCTCATA---AGTGGCCGATGCA
* * *
62243194 TGTTCTAGACATGTCTTACACTAGCTCTCGTCTCAA-T-GCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGGCCGATGCA
* *
62243240 TGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCGCTGCA
1 TGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGCCGATGCA
*
62243286 CGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
62243311 ACAGATATCA
Statistics
Matches: 162, Mismatches: 31, Indels: 35
0.71 0.14 0.15
Matches are distributed among these distances:
43 2 0.01
44 29 0.18
45 2 0.01
46 67 0.41
48 25 0.15
49 35 0.22
50 1 0.01
51 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCCGATGCA
Found at i:62247769 original size:6 final size:6
Alignment explanation
Indices: 62247742--62247824 Score: 130
Period size: 6 Copynumber: 13.8 Consensus size: 6
62247732 TATCAAAACT
* * *
62247742 AGAATC AAAATG AGAATT AGAATC AGAATC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
*
62247790 AGAATC AGAATC AGAATC AAAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT
62247825 TAGGTGACAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:62248145 original size:27 final size:26
Alignment explanation
Indices: 62248097--62248148 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62248087 GCGAGGCTGC
*
62248097 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
62248123 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
62248149 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62248415 original size:27 final size:27
Alignment explanation
Indices: 62248385--62248659 Score: 343
Period size: 27 Copynumber: 10.2 Consensus size: 27
62248375 AACACCCTAG
* *
62248385 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
62248412 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
62248439 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
62248466 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
62248493 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
62248520 GGGTAAAATAGTTATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * * *
62248547 GGGTAAAATAGTCATTTTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*** *
62248574 GGGTAAAACAATAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
62248601 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
62248628 GGGTAAAATGGTAATTCTATAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
62248655 GGGTA
1 GGGTA
62248660 CTTTGGTAAT
Statistics
Matches: 217, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAATGGTAATTCTGTAAATCGA
Found at i:62248697 original size:108 final size:106
Alignment explanation
Indices: 62248385--62248659 Score: 406
Period size: 108 Copynumber: 2.6 Consensus size: 106
62248375 AACACCCTAG
* *
62248385 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAG
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAG
*
62248450 TAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCAA
66 TAATT-T-TAAATTGAGGGTAAAACAGTAATTCTGTAAATCAA
* * *
62248493 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTTATTCTGTAAATCGAGGGTAAAATAG
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAG
* *
62248558 TCATTTTGTAAATTGAGGGTAAAACAATAATTCTGTAAATCAA
66 T-AATTT-TAAATTGAGGGTAAAACAGTAATTCTGTAAATCAA
* * * *
62248601 GGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
62248660 CTTTGGTAAT
Statistics
Matches: 151, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
108 148 0.98
109 3 0.02
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (106 bp):
GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAG
TAATTTTAAATTGAGGGTAAAACAGTAATTCTGTAAATCAA
Found at i:62248867 original size:27 final size:27
Alignment explanation
Indices: 62248636--62248860 Score: 211
Period size: 27 Copynumber: 8.3 Consensus size: 27
62248626 GAGGGTAAAA
* * * * *
62248636 TGGTAATTCTATAAATCAAGGGTACTT
1 TGGTAATTTTACAAACCAGGGGTATTT
**
62248663 TGGTAATTTTACAAGTC-GAGGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTT
** ***
62248690 CAGTAATTTTACAGGTC-GAGGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTT
*** * * *
62248717 CAATAATTTCACAAATCAGAGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
62248744 TGGTAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
62248771 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* * *
62248798 TGGTGATTTTATAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
62248825 TAGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
62248852 TGGTAATTT
1 TGGTAATTT
62248861 GGTAAACTAA
Statistics
Matches: 167, Mismatches: 29, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
27 166 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAGGGGTATTT
Found at i:62252246 original size:47 final size:47
Alignment explanation
Indices: 62252136--62253417 Score: 2393
Period size: 47 Copynumber: 27.1 Consensus size: 47
62252126 TATGCAATGA
62252136 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
62252185 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252232 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252279 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252326 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252373 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252420 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252467 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252514 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252561 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252608 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252655 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252702 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252749 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252796 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252843 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252890 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252937 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62252984 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
*
62253033 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62253080 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62253127 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* *
62253174 TGATAGGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62253221 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
62253268 TGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
62253315 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * *
62253364 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
62253411 TGATAAG
1 TGATAAG
62253418 TCCCGAAGGG
Statistics
Matches: 1209, Mismatches: 20, Indels: 10
0.98 0.02 0.01
Matches are distributed among these distances:
47 1085 0.90
49 124 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:62257272 original size:50 final size:49
Alignment explanation
Indices: 62257213--62257311 Score: 162
Period size: 50 Copynumber: 2.0 Consensus size: 49
62257203 TGAAGGAATG
* *
62257213 TGTACGGAAGGGAGGACAAGAGAGAAGATTTTGATGCGTATGGAGGAAA
1 TGTACGGAAGGGAGGACAAGAGAGAAGATTTTGATGCATATAGAGGAAA
*
62257262 NTGTAGGGAAGGGAGGACAAGAGAGAAGATTTTGATGCATATAGAGGAAA
1 -TGTACGGAAGGGAGGACAAGAGAGAAGATTTTGATGCATATAGAGGAAA
62257312 AGGGAGGAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.18
Consensus pattern (49 bp):
TGTACGGAAGGGAGGACAAGAGAGAAGATTTTGATGCATATAGAGGAAA
Found at i:62266613 original size:17 final size:17
Alignment explanation
Indices: 62266587--62266619 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
62266577 TTATTATAAT
*
62266587 TGTGTGTATATATTATG
1 TGTGTATATATATTATG
62266604 TGTGTATATATATTAT
1 TGTGTATATATATTAT
62266620 ATGCATATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (17 bp):
TGTGTATATATATTATG
Found at i:62271188 original size:28 final size:29
Alignment explanation
Indices: 62271156--62271278 Score: 142
Period size: 29 Copynumber: 4.3 Consensus size: 29
62271146 AAAGCTTGAC
* * *
62271156 TATGAGTGTGA-TTGGGCCTAACGGGTCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
62271184 TATGAATGTGATTTGGGCTTAATGGGGCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
62271213 TACGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* * *
62271242 TATGATTGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
62271270 TATGCATGT
1 TATGAATGT
62271279 ATGTAGATTT
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 32 0.40
29 48 0.60
ACGTcount: A:0.23, C:0.13, G:0.33, T:0.31
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:62281405 original size:44 final size:44
Alignment explanation
Indices: 62281335--62281466 Score: 133
Period size: 44 Copynumber: 3.0 Consensus size: 44
62281325 TTTTCTTCAA
* * *
62281335 GTAGCTTTAATATGCT-TCACTACAACTTTAGGAAGATAAGGTTT
1 GTAGCTTTAATCTGCTCT-ACTGCAACTTCAGGAAGATAAGGTTT
*
62281379 GTAGCTTTAATCTGCTCTACTGCAACTTCA-GAGAGATAAGATTT
1 GTAGCTTTAATCTGCTCTACTGCAACTTCAGGA-AGATAAGGTTT
* * * * * *
62281423 GCTATCTTCAGTCTGCTCCATTGCAACTTCAGGCAGATAAGGTT
1 G-TAGCTTTAATCTGCTCTACTGCAACTTCAGGAAGATAAGGTT
62281467 CGCGACTTGT
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
43 2 0.03
44 36 0.49
45 34 0.47
46 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (44 bp):
GTAGCTTTAATCTGCTCTACTGCAACTTCAGGAAGATAAGGTTT
Done.