Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 191 of 276
Found at i:63072535 original size:31 final size:32
Alignment explanation
Indices: 63072490--63072556 Score: 77
Period size: 31 Copynumber: 2.1 Consensus size: 32
63072480 ACATGCATGC
*
63072490 ACCTTGCTAAAATGAATCTCCA-A-ATTCGGCTA
1 ACCTTGCTAAAATG-AT-TCCACACATTCGGCCA
*
63072522 ACCTTG-TTAAATGATTCCACACATTCGGCCA
1 ACCTTGCTAAAATGATTCCACACATTCGGCCA
63072553 ACCT
1 ACCT
63072557 ATATAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 4 0.13
30 3 0.10
31 18 0.58
32 6 0.19
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28
Consensus pattern (32 bp):
ACCTTGCTAAAATGATTCCACACATTCGGCCA
Found at i:63072888 original size:30 final size:30
Alignment explanation
Indices: 63072830--63072888 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
63072820 TTGAAAATGT
* *
63072830 TTGAGCTGAAGTTGAACTAATTCGAGCTCA
1 TTGAGCTGAAATGGAACTAATTCGAGCTCA
*
63072860 TTGAGCTGAAATGGAAGTTAATTC-AGCTC
1 TTGAGCTGAAATGGAA-CTAATTCGAGCTC
63072889 GTATTAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (30 bp):
TTGAGCTGAAATGGAACTAATTCGAGCTCA
Found at i:63078996 original size:42 final size:42
Alignment explanation
Indices: 63078932--63079020 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
63078922 TCCTAATTGG
* *
63078932 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
* *
63078974 GAAAATAGTTCTCTTGTCCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
63079016 TAAAA
1 GAAAA
63079021 ATATTCCTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
Found at i:63081846 original size:38 final size:38
Alignment explanation
Indices: 63081795--63081870 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
63081785 CCAAACATCA
63081795 CTATGAATTAACGAAAAAGGTTTGGAGGCTTTATATTT
1 CTATGAATTAACGAAAAAGGTTTGGAGGCTTTATATTT
63081833 CTATGAATTAACGAAAAAGGTTTGGAGGCTTTATATTT
1 CTATGAATTAACGAAAAAGGTTTGGAGGCTTTATATTT
63081871 TTGAGGTGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (38 bp):
CTATGAATTAACGAAAAAGGTTTGGAGGCTTTATATTT
Found at i:63082992 original size:42 final size:42
Alignment explanation
Indices: 63082928--63083016 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
63082918 TCCTAATTGG
* *
63082928 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
63082970 GAAAATAGTTCCCTTGTCCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
63083012 TAAAA
1 GAAAA
63083017 ATATTCCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.28
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
Found at i:63098081 original size:50 final size:50
Alignment explanation
Indices: 63098022--63098121 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
63098012 ACACACGGCT
63098022 ACGTTGCACGGCCGTGTGTCCCTTGGGGTATCCTACAATTATAAGTTAGG
1 ACGTTGCACGGCCGTGTGTCCCTTGGGGTATCCTACAATTATAAGTTAGG
63098072 ACGTTGCACGGCCGTGTGTCCCTTGGGGTATCCTACAATTATAAGTTAGG
1 ACGTTGCACGGCCGTGTGTCCCTTGGGGTATCCTACAATTATAAGTTAGG
63098122 CTTGAGCACA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (50 bp):
ACGTTGCACGGCCGTGTGTCCCTTGGGGTATCCTACAATTATAAGTTAGG
Found at i:63099808 original size:65 final size:65
Alignment explanation
Indices: 63099703--63099867 Score: 206
Period size: 65 Copynumber: 2.5 Consensus size: 65
63099693 AACTCATCGG
* * * *
63099703 AACAGAACGCTCATAAAGAGCTGCGTTTGTGTCCGCAACATATGTAGGATCACAACCGATCGCAT
1 AACAGGACGCTCATAAAGAGCTGTGTTTGTGTCCGCAACATATGCAGGATCACAACCGAT-GAAT
63099768 -
65 A
* * * *
63099768 AACAGGACGCTCATAAAGAGCTGTGTTTGTGTCTGTAACATATGCAGGATCATAACCGATTAATA
1 AACAGGACGCTCATAAAGAGCTGTGTTTGTGTCCGCAACATATGCAGGATCACAACCGATGAATA
* * * *
63099833 AACATGACACTTATAAAGAGCTATGTTTGTGTCCG
1 AACAGGACGCTCATAAAGAGCTGTGTTTGTGTCCG
63099868 AGCTATATGC
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
64 2 0.02
65 84 0.98
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (65 bp):
AACAGGACGCTCATAAAGAGCTGTGTTTGTGTCCGCAACATATGCAGGATCACAACCGATGAATA
Found at i:63104054 original size:40 final size:40
Alignment explanation
Indices: 63103985--63104316 Score: 576
Period size: 40 Copynumber: 8.3 Consensus size: 40
63103975 TCTTCGAAAT
* * *
63103985 TTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
* * **
63104024 TTAGCCCGGATATAGTCACTAGCATGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
63104064 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
63104104 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
63104144 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
63104184 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
63104224 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
* *
63104264 TTAGCCCGGATATAGGAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
63104304 TTAGCCCGGATAT
1 TTAGCCCGGATAT
63104317 CATCCGAATA
Statistics
Matches: 280, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
39 4 0.01
40 276 0.99
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
Found at i:63109952 original size:40 final size:40
Alignment explanation
Indices: 63109874--63110054 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
63109864 ACCCAAGTAT
* *
63109874 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
63109913 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63109953 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
63109993 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63110033 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63110055 CATCCGAATA
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 11 0.08
40 118 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:63117505 original size:48 final size:48
Alignment explanation
Indices: 63117373--63117498 Score: 198
Period size: 48 Copynumber: 2.6 Consensus size: 48
63117363 TCTCAAATCG
* *
63117373 ATGCCATGTCCCAAACATGGTCTTACATGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATCGATGCCA
* * * *
63117421 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATCGATGCCA
63117469 ATGCCATGTCCCAGACATGGTCTTACATGG
1 ATGCCATGTCCCAGACATGGTCTTACATGG
63117499 TTTCACACCT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATCGATGCCA
Found at i:63122575 original size:28 final size:28
Alignment explanation
Indices: 63122535--63122604 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
63122525 ATAGTAAGTC
*
63122535 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
63122563 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
63122591 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63122605 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:63127113 original size:101 final size:100
Alignment explanation
Indices: 63126923--63127154 Score: 288
Period size: 101 Copynumber: 2.3 Consensus size: 100
63126913 ATTTTGAGAA
* * *
63126923 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGACGG-TTTAGGTCACGTGTGTAGTA
*
63126988 CTAAGTGCAGGCTACTATGCGTACCTGACAACTTCGAT
65 CTAAGTGCAGGCTACTATGCGTACCAGA-AACTT-GAT
* * *
63127026 CACATTTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGACGGTTTAGGTCACGTGTGTAGTAC
* * *** *
63127090 TAAGTGCAGGCTATTACT-TGTACCAGATTGTTGGT
66 TAAGTGCAGGCTACTA-TGCGTACCAGAAACTTGAT
*
63127125 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
63127155 TGAGTACCAG
Statistics
Matches: 113, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
99 30 0.27
100 2 0.02
101 42 0.37
102 1 0.01
103 38 0.34
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGACGGTTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCAGAAACTTGAT
Found at i:63127117 original size:50 final size:50
Alignment explanation
Indices: 63126923--63127168 Score: 212
Period size: 50 Copynumber: 4.9 Consensus size: 50
63126913 ATTTTGAGAA
* *** **
63126923 CACATGTGTAGTACTATGTGCAGGCTACTA-TGTGTTTAAGACGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACT-TGTACCAGATAG--TTAGGT
* * * * * * *
63126975 CACGTGTGTAGTACTAAGTGCAGGCTACTA-TGCGTACCTGACAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACT-TGTACCAGA-TAGTTAGGT
* * * *
63127026 CACATTTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTAGGT
* * *
63127076 CACGTGTGTAGTACTAAGTGCAGGCTATTACTTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTAGGT
* *
63127125 CGCATGTGTAGTACTAAGTGCAGGCTACTA-TGAGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACT-TGTACCAGATAG
63127169 CTTCGGTTAC
Statistics
Matches: 157, Mismatches: 34, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 40 0.25
50 44 0.28
51 38 0.24
52 34 0.22
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTAGGT
Found at i:63127387 original size:16 final size:15
Alignment explanation
Indices: 63127366--63127395 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
63127356 GAATGTAGCA
63127366 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
63127382 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
63127396 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:63134867 original size:43 final size:43
Alignment explanation
Indices: 63134820--63134984 Score: 167
Period size: 43 Copynumber: 3.8 Consensus size: 43
63134810 CAATGCCAAC
* *
63134820 GTCCCAGACGTGGTCTTACATGTAATCAAATATTGATGCCTCT
1 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCTAT
* *
63134863 GTCCCAGACAG-GGTCTTATATGAAATCAAAT-TCGATG-CTGAT
1 GTCCCAGAC-GTGGTCTTACATGTAATCAAATATCGATGCCT-AT
* * * *
63134905 GTCCCAGACATGGTCTTTCATGTAAATCTCAA-ATCGATGCCAAT
1 GTCCCAGACGTGGTCTTACATGT-AATC-AAATATCGATGCCTAT
* * *
63134949 GTCCCAGACGTGGTCTTACACGAAATCACATATCGA
1 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGA
63134985 AGTCTTATGT
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 25 0.26
43 40 0.41
44 30 0.31
45 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCTAT
Found at i:63134966 original size:86 final size:85
Alignment explanation
Indices: 63134820--63134976 Score: 201
Period size: 86 Copynumber: 1.8 Consensus size: 85
63134810 CAATGCCAAC
* * ** * *
63134820 GTCCCAGACGTGGTCTTACATGTAATCAAATATTGATGCCTCTGTCCCAGACAGGGTCTTATATG
1 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACG
63134885 AAATCAAATTCGATGCTGAT
66 AAATCAAATTCGATGCTGAT
* *
63134905 GTCCCAGACATGGTCTTTCATGTAAATCTCAA-ATCGATGCCAATGTCCCAGAC-GTGGTCTTAC
1 GTCCCAGACATGGTCTTACATGT-AATC-AAATATCGATGCCAATGTCCCAGACAG-GGTCTTAC
63134968 ACGAAATCA
63 ACGAAATCA
63134977 CATATCGAAG
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
85 22 0.36
86 37 0.61
87 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACG
AAATCAAATTCGATGCTGAT
Found at i:63142558 original size:43 final size:42
Alignment explanation
Indices: 63142446--63142602 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
63142436 CAATGCCAAC
** * * **
63142446 GTCCCAGATGTGGTCTTACATGTAATCAAATATCGAT-TCTTCT
1 GTCCCAGACATGGTCTTACACGAAATCAAATA-CGATGTC-AAT
* * *
63142489 ATCCCAGACAGGGTCTTATACGAAATCAAATACGATGTCAAT
1 GTCCCAGACATGGTCTTACACGAAATCAAATACGATGTCAAT
*
63142531 GTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAAT
1 GTCCCAGACATGGTCTTACACG-AAA--TCAAATACGATGTCAAT
* **
63142575 GTCCCAGACGTTATCTTACACGAAATCA
1 GTCCCAGACATGGTCTTACACGAAATCA
63142603 CATATCGGAA
Statistics
Matches: 94, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
41 3 0.03
42 24 0.26
43 33 0.35
44 28 0.30
45 6 0.06
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATACGATGTCAAT
Found at i:63142581 original size:44 final size:44
Alignment explanation
Indices: 63142490--63142601 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
63142480 GATTCTTCTA
* * *
63142490 TCCCAGACAGGGTCTTATACGAAA--TCAAATACGATGTCAATG
1 TCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAATG
63142532 TCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAATG
1 TCCCAGACATGGTCTTACACG-AAATCTCAAATACGATGCCAATG
* **
63142576 TCCCAGACGTTATCTTACACGAAATC
1 TCCCAGACATGGTCTTACACGAAATC
63142602 ACATATCGGA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 19 0.31
43 8 0.13
44 28 0.46
45 6 0.10
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAATG
Found at i:63145519 original size:3 final size:3
Alignment explanation
Indices: 63145511--63145564 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
63145501 AAGGGCCCAA
* * * * *
63145511 ATT ATT ATT ATT ATT ATC ATT ATT ACT ACT ACT ATT ATT AAAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
63145557 ATT ATT AT
1 ATT ATT AT
63145565 CTTCTTTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
3 42 0.95
4 2 0.05
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:63145943 original size:27 final size:27
Alignment explanation
Indices: 63145893--63145944 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
63145883 AATCTTGGAA
* *
63145893 AAAGTTTTGATTTTATTAAAAAAAAAG
1 AAAGTTTAGATTTTATAAAAAAAAAAG
*
63145920 AAAGTTTAGATTTT-TAAAATAAAAA
1 AAAGTTTAGATTTTATAAAAAAAAAA
63145945 TCTACATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.37
Consensus pattern (27 bp):
AAAGTTTAGATTTTATAAAAAAAAAAG
Found at i:63146072 original size:19 final size:19
Alignment explanation
Indices: 63146020--63146065 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
63146010 AATAAAGTTT
63146020 TGATTTTTAAGAAAAATAG
1 TGATTTTTAAGAAAAATAG
63146039 TGATTTTTAAGAAAAATAG
1 TGATTTTTAAGAAAAATAG
63146058 TGATTTTT
1 TGATTTTT
63146066 TTAAAAAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.43
Consensus pattern (19 bp):
TGATTTTTAAGAAAAATAG
Found at i:63162648 original size:42 final size:42
Alignment explanation
Indices: 63162598--63163089 Score: 642
Period size: 42 Copynumber: 11.7 Consensus size: 42
63162588 AATGCTCAGC
* *
63162598 TGTGGAGGTCTATTTACTTTACATTGCATTTAGAGACCCAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* * *
63162640 CGTAGAGGTCCATTTACTTTTTATTGCATTTAGAGACCCAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* *
63162682 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* * * *
63162724 TGTGGAGGTTCATTTACTTTTTATTTCATTTAGAGGCCCAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* * * * *
63162766 TGTGGAGTTTCATTTACTTTTCATTACATTTAAAGGCCCAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* * *
63162808 TGTGGATGTCCATTTACTTTTCATTGCATTTAGGGGCCCAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* * * * *
63162850 TGTGGAGGTTCATTTAATTTTCATTGCGTTTAAAGACCCATG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* *
63162892 TGTGGAGGTCCATTTGCTTTTCATTGCATTTAGAGACCTAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* *
63162934 TGTGGAGGTCCATTGACTTTTCATTGCATTTAGAGACCTAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* * **
63162976 TGTGGAGGTCCATTGACTTTTCATTGCATTTAGAGGCTTAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* * * *
63163018 TGTGGAGGTCCGTTTACTTTTCATTGTATTTAAAGTCCCAGG
1 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* *
63163060 TGTGGGGGTCCATTTACTTTTCCTTGCATT
1 TGTGGAGGTCCATTTACTTTTCATTGCATT
63163090 CTCATTTCAA
Statistics
Matches: 396, Mismatches: 54, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 396 1.00
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (42 bp):
TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
Found at i:63163471 original size:3 final size:3
Alignment explanation
Indices: 63163463--63163500 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
63163453 AAGGGCCCAA
63163463 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
63163501 CTTTTTTACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:63164014 original size:130 final size:128
Alignment explanation
Indices: 63163814--63164085 Score: 422
Period size: 130 Copynumber: 2.1 Consensus size: 128
63163804 GATCTTAGGA
* *
63163814 AAAGTTTTGA-TTTTTTAAAAAAAGAAAGTTTAGATTTTTAAAATAAAAATATATTTTTTAGTCA
1 AAAGTTTTGATTTTTTTAAAAAAAGAAAGTTTAAATTTTTAAAATAAAAATATACTTTTTAGTCA
*
63163878 TATTAAAGGAAAAGTTTAAATTCTTAAAACAAAGTTTTGATCTTTTTCAACTATTCCG-AAAT
66 TATTAAAGGAAAAGTTTAAATTCTTAAAACAAAGTTTTGATATTTTTCAACTATTCCGAAAAT
* *
63163940 AAAGTTTTAATTTTTTTAAAAAAAAGAGAAAGTTTAAATTTTTAAAATAAAAATATGCTTTTTAG
1 AAAGTTTTGATTTTTTT--AAAAAA-AGAAAGTTTAAATTTTTAAAATAAAAATATACTTTTTAG
* * **
63164005 TTATATTAAAGGAAAAGTTTAAATTCTTAAAATAAAGTTTTGATATTTTTCAACTATTTTGAAAA
63 TCATATTAAAGGAAAAGTTTAAATTCTTAAAACAAAGTTTTGATATTTTTCAACTATTCCGAAAA
63164070 T
128 T
63164071 AAAGTTTTGATTTTT
1 AAAGTTTTGATTTTT
63164086 AAGAAAATTA
Statistics
Matches: 131, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
126 9 0.07
127 6 0.05
129 6 0.05
130 92 0.70
131 18 0.14
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (128 bp):
AAAGTTTTGATTTTTTTAAAAAAAGAAAGTTTAAATTTTTAAAATAAAAATATACTTTTTAGTCA
TATTAAAGGAAAAGTTTAAATTCTTAAAACAAAGTTTTGATATTTTTCAACTATTCCGAAAAT
Found at i:63164111 original size:22 final size:21
Alignment explanation
Indices: 63164086--63164147 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 21
63164076 TTTGATTTTT
63164086 AAGAAAATTAGTTTTTTTTTAA
1 AAGAAAA-TAGTTTTTTTTTAA
*
63164108 AAGAGAA-AGTTTATATTTTTAA
1 AAGAAAATAGTTT-T-TTTTTAA
*
63164130 AATAAAAATATGTTTTTT
1 AA-GAAAATA-GTTTTTT
63164148 AGTCATCTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
20 5 0.16
21 1 0.03
22 15 0.47
23 5 0.16
24 2 0.06
25 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.47
Consensus pattern (21 bp):
AAGAAAATAGTTTTTTTTTAA
Found at i:63176443 original size:26 final size:26
Alignment explanation
Indices: 63176414--63176495 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
63176404 TGATACAAAT
63176414 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63176440 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63176466 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63176492 TGAT
1 TGAT
63176496 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:63179185 original size:23 final size:25
Alignment explanation
Indices: 63179165--63179214 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
63179155 AACAAATAAT
63179165 TGTGACAGAGCCACCAGAATAGATA
1 TGTGACAGAGCCACCAGAATAGATA
* * *
63179190 TGTGGCAGTGCCACCAGATTAGATA
1 TGTGACAGAGCCACCAGAATAGATA
63179215 ATTGTGGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (25 bp):
TGTGACAGAGCCACCAGAATAGATA
Found at i:63179228 original size:27 final size:27
Alignment explanation
Indices: 63179143--63179233 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
63179133 GTGCTAATGA
* * * *
63179143 CAGTGTCACCAGAACAAATAATTGTGA
1 CAGTGCCACCAGAATAGATAATTGTGG
*
63179170 CAGAGCCACCAGAATAGAT-A-TGTGG
1 CAGTGCCACCAGAATAGATAATTGTGG
*
63179195 CAGTGCCACCAGATTAGATAATTGTGG
1 CAGTGCCACCAGAATAGATAATTGTGG
*
63179222 CATTGCCACCAG
1 CAGTGCCACCAG
63179234 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
25 21 0.39
26 2 0.04
27 31 0.57
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGTGCCACCAGAATAGATAATTGTGG
Found at i:63181074 original size:10 final size:9
Alignment explanation
Indices: 63181051--63181075 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
63181041 TTGAAAACCA
63181051 CAAAAATCC
1 CAAAAATCC
63181060 CAAAAATCC
1 CAAAAATCC
63181069 CAAAAAT
1 CAAAAAT
63181076 TGGGGCGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (9 bp):
CAAAAATCC
Found at i:63186752 original size:27 final size:27
Alignment explanation
Indices: 63186698--63186916 Score: 345
Period size: 27 Copynumber: 8.1 Consensus size: 27
63186688 AGCATGGTTG
* * *
63186698 CCAGAACAGATAA-TGTGACAGTGTCA
1 CCAGATCAGATAATTGTGGCAGTGCCA
* *
63186724 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGATCAGATAATTGTGGCAGTGCCA
*
63186751 CCAGAACAGAT-ATATGTGGCAGTGCCA
1 CCAGATCAGATAAT-TGTGGCAGTGCCA
63186778 CCAGATCAGATAATTGTGGCAGTGCCA
1 CCAGATCAGATAATTGTGGCAGTGCCA
63186805 CCAGATCAGATAATTGTGGCAGTGCCA
1 CCAGATCAGATAATTGTGGCAGTGCCA
63186832 CCAGATCAGATAATTGTGGCAGTGCCA
1 CCAGATCAGATAATTGTGGCAGTGCCA
63186859 CCAGATCAGATAATTGTGGCAGTGCCA
1 CCAGATCAGATAATTGTGGCAGTGCCA
63186886 CCAGATCAGATAATTGTGGCA-TAGCCA
1 CCAGATCAGATAATTGTGGCAGT-GCCA
63186913 CCAG
1 CCAG
63186917 GACGCTTCCT
Statistics
Matches: 184, Mismatches: 5, Indels: 7
0.94 0.03 0.04
Matches are distributed among these distances:
26 16 0.09
27 166 0.90
28 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CCAGATCAGATAATTGTGGCAGTGCCA
Found at i:63186992 original size:18 final size:18
Alignment explanation
Indices: 63186969--63187003 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
63186959 CAATAATTTC
63186969 TATACATAGGGGTATTAT
1 TATACATAGGGGTATTAT
63186987 TATACATAGGGGTATTA
1 TATACATAGGGGTATTA
63187004 AGTAATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (18 bp):
TATACATAGGGGTATTAT
Found at i:63187344 original size:18 final size:18
Alignment explanation
Indices: 63187321--63187355 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
63187311 CAATAATTTC
63187321 TATACATAGGGGTATTAT
1 TATACATAGGGGTATTAT
63187339 TATACATAGGGGTATTA
1 TATACATAGGGGTATTA
63187356 AGTAATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (18 bp):
TATACATAGGGGTATTAT
Found at i:63188610 original size:24 final size:24
Alignment explanation
Indices: 63188583--63188669 Score: 138
Period size: 24 Copynumber: 3.6 Consensus size: 24
63188573 TCTAATCGGT
*
63188583 TCCTAAATCCTCTCCCTTATCATC
1 TCCTAAATCCTCTCCCTTATCAGC
*
63188607 TCCTAAATCCTCTCTCTTATCAGC
1 TCCTAAATCCTCTCCCTTATCAGC
63188631 TCCTAAATCCTCTCCCTTATCAGC
1 TCCTAAATCCTCTCCCTTATCAGC
* *
63188655 TCCCAAATCTTCTCC
1 TCCTAAATCCTCTCC
63188670 TGACAGCCTT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.21, C:0.41, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCTAAATCCTCTCCCTTATCAGC
Found at i:63188635 original size:48 final size:48
Alignment explanation
Indices: 63188569--63188668 Score: 146
Period size: 48 Copynumber: 2.1 Consensus size: 48
63188559 CCAACACCGT
* * * *
63188569 TCTCTCTAATCGGTTCCTAAATCCTCTCCCTTATCATCTCCTAAATCC
1 TCTCTCTAATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCCAAATCC
* *
63188617 TCTCTCTTATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCCAAATCT
1 TCTCTCTAATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCCAAATCC
63188665 TCTC
1 TCTC
63188669 CTGACAGCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.20, C:0.39, G:0.04, T:0.37
Consensus pattern (48 bp):
TCTCTCTAATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCCAAATCC
Found at i:63190914 original size:33 final size:32
Alignment explanation
Indices: 63190873--63190954 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 32
63190863 ATCTATATTT
*
63190873 TTTTTTAAATATTGATTT-GAAAATTTGTAGTCA
1 TTTTTTAAATATT--TTTACAAAATTTGTAGTCA
*
63190906 TTTTTTAAAATATTTTTACAAAATTTTTAGTCA
1 TTTTTT-AAATATTTTTACAAAATTTGTAGTCA
**
63190939 TTTTAAAAATATTTTT
1 TTTTTTAAATATTTTT
63190955 TTAATTTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
32 13 0.30
33 23 0.53
34 7 0.16
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (32 bp):
TTTTTTAAATATTTTTACAAAATTTGTAGTCA
Found at i:63190955 original size:33 final size:33
Alignment explanation
Indices: 63190892--63190954 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
63190882 TATTGATTTG
*
63190892 AAAATTTGTAGTCATTTTTTAAAATATTTTTAC
1 AAAATTTGTAGTCATTTTTAAAAATATTTTTAC
*
63190925 AAAATTTTTAGTCA-TTTTAAAAATATTTTT
1 AAAATTTGTAGTCATTTTTAAAAATATTTTT
63190955 TTAATTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (33 bp):
AAAATTTGTAGTCATTTTTAAAAATATTTTTAC
Found at i:63203598 original size:46 final size:46
Alignment explanation
Indices: 63203545--63203724 Score: 192
Period size: 46 Copynumber: 3.9 Consensus size: 46
63203535 TTGTGGGCTA
* *
63203545 GTGTAAGACGTGTC-AGGGACATGCATCGGCCAC-ATTATGAGAGCCT
1 GTGTAAGACATGTCTA-GGACATGCATCGGCCACGA-GATGAGAGCCT
*
63203591 GTGTAAGACCATGTCTAGGACATGGCATCGG-CATCGAGATGAGTG-CT
1 GTGTAAGA-CATGTCTAGGACAT-GCATCGGCCA-CGAGATGAGAGCCT
* *
63203638 AGTGTAAGACATGT-TCAGGACATGCATCGGCCTCGAGATGTA-AGCCA
1 -GTGTAAGACATGTCT-AGGACATGCATCGGCCACGAGATG-AGAGCCT
*
63203685 GTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGA
1 GTGTAAGACATGTCTAGGACATGCATCGGCCACGAGATGA
63203725 TAGTCAGTAT
Statistics
Matches: 115, Mismatches: 8, Indels: 23
0.79 0.05 0.16
Matches are distributed among these distances:
45 1 0.01
46 59 0.51
47 31 0.27
48 23 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GTGTAAGACATGTCTAGGACATGCATCGGCCACGAGATGAGAGCCT
Found at i:63203738 original size:46 final size:45
Alignment explanation
Indices: 63203591--63203739 Score: 171
Period size: 46 Copynumber: 3.2 Consensus size: 45
63203581 ATGAGAGCCT
63203591 GTGTAAGACCATGTCTAGGACATGGCATCGGC-ATCGAGATG-AGTGCTA
1 GTGTAAGA-CATGTCTAGGACAT-GCATCGGCTA-CGAGATGTAGT-C-A
*
63203639 GTGTAAGACATGT-TCAGGACATGCATCGGCCT-CGAGATGTAAGCCA
1 GTGTAAGACATGTCT-AGGACATGCATCGG-CTACGAGATGT-AGTCA
63203685 GTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGATAGTCA
1 GTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATG-TAGTCA
*
63203731 GTATAAGAC
1 GTGTAAGAC
63203740 CATATCTGGG
Statistics
Matches: 90, Mismatches: 3, Indels: 18
0.81 0.03 0.16
Matches are distributed among these distances:
45 2 0.02
46 62 0.69
47 16 0.18
48 10 0.11
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGTAGTCA
Found at i:63218471 original size:43 final size:43
Alignment explanation
Indices: 63218404--63218513 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 43
63218394 TGTCACGTAC
* *
63218404 ATCATGAACTCAGACCAACCCAATGAGCTCA-AGTGGCGCATGT
1 ATCATGAACTCAGACCAACCCAATGAGCTCAGA-TGGCACATAT
* *** * *
63218447 ATCATGAACTGAGACCAGTTCAATGAGTTCGGATGGCACATAT
1 ATCATGAACTCAGACCAACCCAATGAGCTCAGATGGCACATAT
*
63218490 ATCATGAACTCAGACCAACTCAAT
1 ATCATGAACTCAGACCAACCCAAT
63218514 AAGTACAGAT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 54 0.98
44 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (43 bp):
ATCATGAACTCAGACCAACCCAATGAGCTCAGATGGCACATAT
Found at i:63219088 original size:158 final size:158
Alignment explanation
Indices: 63218795--63219111 Score: 562
Period size: 158 Copynumber: 2.0 Consensus size: 158
63218785 TATCAAGCAT
*
63218795 TAACATTCAAGTATAACGTTGCATTATCATTATCACACGAACTTACCTCGATACCAAAAATGGCG
1 TAACATTCAAGTATAACGTTGCATTATCATTATCACACGAACTTACCTCGATACCAAAAATGGCA
* * *
63218860 AAAATGGACCTAACCGTCAATTTCTTATTTTTCCCCCATTCTAGGTTTGAACCTCATTTTCTTTG
66 AAAAGGGACCTAACCGTCAATTTCTTATTTTTCCCCCATTCTAGGTCTGAACCTCATTTTATTTG
*
63218925 TTCTATAATATCACATTTAGTCTATTTA
131 ATCTATAATATCACATTTAGTCTATTTA
*
63218953 TAACATTCAAGTATAACGTTGCATTATTATTATCACACGAACTTACCTCGATACCAAAAATGGCA
1 TAACATTCAAGTATAACGTTGCATTATCATTATCACACGAACTTACCTCGATACCAAAAATGGCA
* *
63219018 AAAAGGGACCTAACTGTCAATTTCTTATTTTTCCCCCGTTCTAGGTCTGAACCTCATTTTATTTG
66 AAAAGGGACCTAACCGTCAATTTCTTATTTTTCCCCCATTCTAGGTCTGAACCTCATTTTATTTG
63219083 ATCTATAATATCACATTTAGTCTATTTA
131 ATCTATAATATCACATTTAGTCTATTTA
63219111 T
1 T
63219112 TAGTCACATT
Statistics
Matches: 151, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 151 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.37
Consensus pattern (158 bp):
TAACATTCAAGTATAACGTTGCATTATCATTATCACACGAACTTACCTCGATACCAAAAATGGCA
AAAAGGGACCTAACCGTCAATTTCTTATTTTTCCCCCATTCTAGGTCTGAACCTCATTTTATTTG
ATCTATAATATCACATTTAGTCTATTTA
Found at i:63219958 original size:15 final size:15
Alignment explanation
Indices: 63219913--63219960 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
63219903 CATTCCGTAT
63219913 AATTGTAGACCATAAA
1 AATT-TAGACCATAAA
* * *
63219929 AATATA-ACAAAAAA
1 AATTTAGACCATAAA
63219943 AATTTAGACCATAAA
1 AATTTAGACCATAAA
63219958 AAT
1 AAT
63219961 ATAACAATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
14 11 0.44
15 11 0.44
16 3 0.12
ACGTcount: A:0.60, C:0.10, G:0.06, T:0.23
Consensus pattern (15 bp):
AATTTAGACCATAAA
Found at i:63226412 original size:46 final size:46
Alignment explanation
Indices: 63226266--63226482 Score: 217
Period size: 46 Copynumber: 4.7 Consensus size: 46
63226256 ATTGTGAGCT
* * * **
63226266 AGTGTACGACATGTCTGAGACATGCATCGGCCAC-A-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACAT-A-AGCC
* * * ** *
63226312 AGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGAGT--GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGAC-A-TAAGCC
63226360 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACATAAGCC
* *
63226406 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACATAAGCC
* *
63226452 AGTGTAAGATATGTCTGGGACATGTATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
63226483 TACGAGAGTG
Statistics
Matches: 142, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 94 0.66
47 25 0.18
48 18 0.13
49 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACATAAGCC
Found at i:63228127 original size:41 final size:40
Alignment explanation
Indices: 63228065--63228149 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 40
63228055 TTCATGGAGT
*
63228065 ACATTACCATTACGTACATAGCATCGTAAACATTTAATTTA
1 ACATCACCATTACGTACATAGCATCGTAAACA-TTAATTTA
63228106 ACATCACCATTACGTACATAGCATCGTAAACATTAATTTA
1 ACATCACCATTACGTACATAGCATCGTAAACATTAATTTA
63228146 ACAT
1 ACAT
63228150 AGTCAAATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 12 0.28
41 31 0.72
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (40 bp):
ACATCACCATTACGTACATAGCATCGTAAACATTAATTTA
Found at i:63231238 original size:27 final size:27
Alignment explanation
Indices: 63231201--63231334 Score: 153
Period size: 27 Copynumber: 5.0 Consensus size: 27
63231191 ATATATACAT
* * *
63231201 CACATAGGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
** **
63231228 CATGTAAGGGC-ATTTCAGTCATTTTAC
1 CACATAAGGGCAAAAT-AGTCATTTTAC
* *
63231255 AATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
63231282 CACATAAGGGCAAAATAGTCATTTGAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
63231309 CACATAAGGGAAAAATAGTCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
63231335 TCGATTTGGG
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 86 0.97
28 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:63235112 original size:22 final size:22
Alignment explanation
Indices: 63235084--63235128 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
63235074 TCTATTTTAT
63235084 GGACAAAAATAAGCATGAATAA
1 GGACAAAAATAAGCATGAATAA
*
63235106 GGACAAAAATGAGCATGAATAA
1 GGACAAAAATAAGCATGAATAA
63235128 G
1 G
63235129 TAAAAAGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.56, C:0.09, G:0.22, T:0.13
Consensus pattern (22 bp):
GGACAAAAATAAGCATGAATAA
Found at i:63236114 original size:42 final size:42
Alignment explanation
Indices: 63236066--63236196 Score: 228
Period size: 42 Copynumber: 3.1 Consensus size: 42
63236056 GTCTGGAACA
63236066 TGGCATCGATATGAGAATCATGTAAGACCATAGCTGGGCTAT
1 TGGCATCGATATGAGAATCATGTAAGACCATAGCTGGGCTAT
63236108 TGGCATCGATATGAGAATCATGTAAGACCATAGCTGGGCTAT
1 TGGCATCGATATGAGAATCATGTAAGACCATAGCTGGGCTAT
* * *
63236150 TGGCATCGATATGAGAATCATGTAAGACCTTATCTGGGATA-
1 TGGCATCGATATGAGAATCATGTAAGACCATAGCTGGGCTAT
63236191 TGGCAT
1 TGGCAT
63236197 TGGTATGATT
Statistics
Matches: 86, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
41 6 0.07
42 80 0.93
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (42 bp):
TGGCATCGATATGAGAATCATGTAAGACCATAGCTGGGCTAT
Found at i:63239403 original size:18 final size:18
Alignment explanation
Indices: 63239380--63239443 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
63239370 TTAAAATATG
*
63239380 GTTGTATAATTAATTATT
1 GTTGTAAAATTAATTATT
* *
63239398 GTTGTAAAA-TATTTAAT
1 GTTGTAAAATTAATTATT
*
63239415 -TT-TAAAATTAACTATT
1 GTTGTAAAATTAATTATT
63239431 GTTGTAAAATTAA
1 GTTGTAAAATTAA
63239444 ATAAATTAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.14
16 7 0.19
17 8 0.22
18 17 0.46
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (18 bp):
GTTGTAAAATTAATTATT
Found at i:63239453 original size:33 final size:33
Alignment explanation
Indices: 63239387--63239455 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
63239377 ATGGTTGTAT
* ** *
63239387 AATTAATTATTGTTGTAAAATATTTAATTTTAA
1 AATTAACTATTGTTGTAAAATAAATAATATTAA
63239420 AATTAACTATTGTTGTAAAATTAAATAA-ATTAA
1 AATTAACTATTGTTGTAAAA-TAAATAATATTAA
63239453 AAT
1 AAT
63239456 GAAATTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 26 0.84
34 5 0.16
ACGTcount: A:0.48, C:0.01, G:0.06, T:0.45
Consensus pattern (33 bp):
AATTAACTATTGTTGTAAAATAAATAATATTAA
Found at i:63239550 original size:19 final size:19
Alignment explanation
Indices: 63239524--63239633 Score: 79
Period size: 19 Copynumber: 5.8 Consensus size: 19
63239514 TATTATTTTA
63239524 AAAAATCAAAATTAAATTT
1 AAAAATCAAAATTAAATTT
*
63239543 AAAGATCAAAATT-AA-TT
1 AAAAATCAAAATTAAATTT
* *
63239560 AAAGAAACAAGTTAATTACAGTTT
1 AAA-AATCAA---AATTA-AATTT
*
63239584 --TAAT-AAAATT-AATTT
1 AAAAATCAAAATTAAATTT
63239599 AAAAAATCAAAATTAAATTT
1 -AAAAATCAAAATTAAATTT
*
63239619 AAAAATCAAATTTAA
1 AAAAATCAAAATTAA
63239634 TTATAGAAGA
Statistics
Matches: 70, Mismatches: 9, Indels: 24
0.68 0.09 0.23
Matches are distributed among these distances:
15 4 0.06
17 9 0.13
18 9 0.13
19 32 0.46
20 7 0.10
21 6 0.09
23 1 0.01
24 2 0.03
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (19 bp):
AAAAATCAAAATTAAATTT
Found at i:63239552 original size:75 final size:75
Alignment explanation
Indices: 63239457--63239641 Score: 248
Period size: 76 Copynumber: 2.4 Consensus size: 75
63239447 AATTAAAATG
* * * *
63239457 AAATTAATTTTAAAATTCAAAATTAATTAGAGAAATAAATTAATTACA-ATTTAA-AAATATTAT
1 AAATTAAATTTAAAA-TCAAAATTAATTAAAGAAACAAATTAATTACAGATTTAATAAA-ATTAA
63239520 TTTAAAAAATCA
64 TTTAAAAAATCA
* *
63239532 AAATTAAATTTAAAGATCAAAATTAATTAAAGAAACAAGTTAATTACAGTTTTAATAAAATTAAT
1 AAATTAAATTTAAA-ATCAAAATTAATTAAAGAAACAAATTAATTACAGATTTAATAAAATTAAT
63239597 TTAAAAAATCA
65 TTAAAAAATCA
* *
63239608 AAATTAAATTTAAAAATCAAATTTAATTATAGAA
1 AAATTAAATTT-AAAATCAAAATTAATTAAAGAA
63239642 GATGGGATGA
Statistics
Matches: 98, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
75 42 0.43
76 50 0.51
77 6 0.06
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (75 bp):
AAATTAAATTTAAAATCAAAATTAATTAAAGAAACAAATTAATTACAGATTTAATAAAATTAATT
TAAAAAATCA
Found at i:63239620 original size:34 final size:35
Alignment explanation
Indices: 63239498--63239620 Score: 103
Period size: 38 Copynumber: 3.4 Consensus size: 35
63239488 GAAATAAATT
*
63239498 AATTACAATTTAA-AAATATTATTTTAAAAAATCAA
1 AATTACAATTTAATAAA-ATTAATTTAAAAAATCAA
63239533 AATTA-AATTTAAAGATCAAAATTAA-TTAAAGAAA-CAA
1 AATTACAATTT--A-AT-AAAATTAATTTAAA-AAATCAA
*
63239570 GTTAATTACAGTTTTAATAAAATTAATTTAAAAAATCAA
1 ---AATTACA-ATTTAATAAAATTAATTTAAAAAATCAA
63239609 AATTA-AATTTAA
1 AATTACAATTTAA
63239621 AAATCAAATT
Statistics
Matches: 72, Mismatches: 3, Indels: 27
0.71 0.03 0.26
Matches are distributed among these distances:
34 10 0.14
35 6 0.08
36 6 0.08
37 9 0.12
38 18 0.25
39 13 0.18
40 6 0.08
41 1 0.01
42 3 0.04
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (35 bp):
AATTACAATTTAATAAAATTAATTTAAAAAATCAA
Found at i:63241173 original size:13 final size:13
Alignment explanation
Indices: 63241155--63241179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63241145 GTTTAAAATC
63241155 GAAATTAATTAAA
1 GAAATTAATTAAA
63241168 GAAATTAATTAA
1 GAAATTAATTAA
63241180 TTACAGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
GAAATTAATTAAA
Found at i:63241239 original size:21 final size:21
Alignment explanation
Indices: 63241215--63241255 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
63241205 TAAAAAATAA
*
63241215 AAATTTAAAAATCAATAAATT
1 AAATTTAAAAATCAAGAAATT
63241236 AAATTTAAAAATCAAGAAAT
1 AAATTTAAAAATCAAGAAAT
63241256 AAGTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (21 bp):
AAATTTAAAAATCAAGAAATT
Found at i:63248965 original size:18 final size:18
Alignment explanation
Indices: 63248939--63248974 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
63248929 TAGGCATTCG
*
63248939 AACTTGTTGAGTTGAGTC
1 AACTCGTTGAGTTGAGTC
63248957 AACTCGTTGAGTTGAGTC
1 AACTCGTTGAGTTGAGTC
63248975 CGAGTTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (18 bp):
AACTCGTTGAGTTGAGTC
Found at i:63255032 original size:25 final size:24
Alignment explanation
Indices: 63254993--63255084 Score: 87
Period size: 25 Copynumber: 3.7 Consensus size: 24
63254983 TCATTAGGGA
*
63254993 TTACTGATTCTCAGCTCGTATGAGC
1 TTACCGATT-TCAGCTCGTATGAGC
63255018 TTACCGATTTGCAGCTCGTGA-GAGC
1 TTACCGATTT-CAGCTCGT-ATGAGC
* *
63255043 TTACCAATTCTCAGCTCGTATGAGA
1 TTACCGATT-TCAGCTCGTATGAGC
**
63255068 TTATTGATTTACAGCTC
1 TTACCGATTT-CAGCTC
63255085 ATGAGAGCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
24 3 0.05
25 51 0.91
26 2 0.04
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (24 bp):
TTACCGATTTCAGCTCGTATGAGC
Found at i:63255100 original size:25 final size:25
Alignment explanation
Indices: 63254994--63255121 Score: 73
Period size: 25 Copynumber: 5.1 Consensus size: 25
63254984 CATTAGGGAT
* * *
63254994 TACTGATTCTCAGCTCGTATGAGCT
1 TACTGATTCACAGCTCATATGAGCA
* ** * *
63255019 TACCGATTTGCAGCTCGTGA-GAGCT
1 TACTGATTCACAGCTCAT-ATGAGCA
** * *
63255044 TACCAATTCTCAGCTCGTATGAG-A
1 TACTGATTCACAGCTCATATGAGCA
* *
63255068 TTATTGATTTACAGCTCATGA-GAGCA
1 -TACTGATTCACAGCTCAT-ATGAGCA
*
63255094 TACTGATTCATAGCTCATATGAGCA
1 TACTGATTCACAGCTCATATGAGCA
63255119 TAC
1 TAC
63255122 ATGTATAGGA
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
24 2 0.02
25 76 0.94
26 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (25 bp):
TACTGATTCACAGCTCATATGAGCA
Found at i:63255109 original size:50 final size:50
Alignment explanation
Indices: 63254994--63255116 Score: 149
Period size: 50 Copynumber: 2.5 Consensus size: 50
63254984 CATTAGGGAT
* * * *
63254994 TACTGATTCTCAGCTCGTATGAGCTTACCGATTTGCAGCTCGTGAGAGCT
1 TACTGATTCTCAGCTCGTATGAGATTACCGATTTACAGCTCATGAGAGCA
** **
63255044 TACCAATTCTCAGCTCGTATGAGATTATTGATTTACAGCTCATGAGAGCA
1 TACTGATTCTCAGCTCGTATGAGATTACCGATTTACAGCTCATGAGAGCA
*
63255094 TACTGATTCAT-AGCTCATATGAG
1 TACTGATTC-TCAGCTCGTATGAG
63255117 CATACATGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 60 0.98
51 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (50 bp):
TACTGATTCTCAGCTCGTATGAGATTACCGATTTACAGCTCATGAGAGCA
Found at i:63269207 original size:93 final size:93
Alignment explanation
Indices: 63269095--63269265 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
63269085 GCCCCTAAGT
*
63269095 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63269159 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
63269188 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63269253 CGAGTTCGGATGC
66 CGAGTTCGGATGC
63269266 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63269260 original size:46 final size:46
Alignment explanation
Indices: 63269090--63269262 Score: 212
Period size: 46 Copynumber: 3.7 Consensus size: 46
63269080 AACCCGCCCC
* *
63269090 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
*
63269136 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
63269184 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
63269229 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63269263 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 8, Indels: 20
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 59 0.54
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:63269719 original size:30 final size:30
Alignment explanation
Indices: 63269685--63269744 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
63269675 ATTTAATACG
63269685 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
63269715 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
63269745 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:63271730 original size:38 final size:38
Alignment explanation
Indices: 63271687--63271762 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
63271677 CATCCTTTTT
*
63271687 CATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAAGG
1 CATTTCTTTTGGCCCAAAATTCTAAGGAAGGAGGAAGG
63271725 CATTTCTTTTGGCCCAAAATTCTAAGGAAGGAGGAAGG
1 CATTTCTTTTGGCCCAAAATTCTAAGGAAGGAGGAAGG
63271763 AGTTCTTGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (38 bp):
CATTTCTTTTGGCCCAAAATTCTAAGGAAGGAGGAAGG
Found at i:63273043 original size:40 final size:40
Alignment explanation
Indices: 63272949--63273093 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
63272939 TACTCGAATG
*
63272949 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
63272990 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
63273030 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
63273070 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63273094 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63287592 original size:18 final size:17
Alignment explanation
Indices: 63287556--63287589 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63287546 TAGCAAGATG
63287556 AATTTGGACTTTTTTTT
1 AATTTGGACTTTTTTTT
63287573 AATTTGGACTTTTTTTT
1 AATTTGGACTTTTTTTT
63287590 TAACTTATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.12, T:0.65
Consensus pattern (17 bp):
AATTTGGACTTTTTTTT
Found at i:63287604 original size:19 final size:18
Alignment explanation
Indices: 63287556--63287592 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
63287546 TAGCAAGATG
63287556 AATTTGGAC-TTTTTTTT
1 AATTTGGACTTTTTTTTT
63287573 AATTTGGACTTTTTTTTT
1 AATTTGGACTTTTTTTTT
63287591 AA
1 AA
63287593 CTTATGAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (18 bp):
AATTTGGACTTTTTTTTT
Found at i:63291461 original size:29 final size:29
Alignment explanation
Indices: 63291429--63291503 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
63291419 CGTATGCATG
63291429 TGAATTGGGCCTAGTGGGCAATAAGAATA
1 TGAATTGGGCCTAGTGGGCAATAAGAATA
* * * **
63291458 TGAACTCGGCC-AGATGGGCCATTTGAATA
1 TGAATTGGGCCTAG-TGGGCAATAAGAATA
*
63291487 AG-ATTGGGCCTAGTGGG
1 TGAATTGGGCCTAGTGGG
63291504 TCATATGCAT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
28 12 0.33
29 24 0.67
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (29 bp):
TGAATTGGGCCTAGTGGGCAATAAGAATA
Found at i:63295986 original size:29 final size:28
Alignment explanation
Indices: 63295953--63296071 Score: 105
Period size: 28 Copynumber: 4.2 Consensus size: 28
63295943 GCATGAGTAT
*
63295953 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGAATTGGGCC-AATGGGCCATATG
* * *
63295982 AATGTGAATTGGGCCAGTGGGCCTTAAG
1 AATGTGAATTGGGCCAATGGGCCATATG
* * *
63296010 AATATGAACTGGGCCAGATGGGCCATTTG
1 AATGTGAATTGGGCCA-ATGGGCCATATG
** *
63296039 AATAAG-ATTGGGCCTAGTGGGCCATATG
1 AATGTGAATTGGGCC-AATGGGCCATATG
*
63296067 CATGT
1 AATGT
63296072 ATGTAGGGGT
Statistics
Matches: 71, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
28 43 0.61
29 28 0.39
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
AATGTGAATTGGGCCAATGGGCCATATG
Found at i:63306224 original size:27 final size:27
Alignment explanation
Indices: 63306175--63306282 Score: 87
Period size: 27 Copynumber: 4.0 Consensus size: 27
63306165 AGCATGGCTG
** *
63306175 CCAGAACAGATA-TTGTGATAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
*
63306201 CCAGATATAGATATTT-TGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
* *
63306228 CTAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
* * * *
63306255 GCAGCATCAGATA-ATGTGGCAAAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
63306282 C
1 C
63306283 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
26 14 0.22
27 42 0.65
28 9 0.14
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.22
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:63306876 original size:27 final size:26
Alignment explanation
Indices: 63306846--63307041 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 26
63306836 GGGGCAAAAT
* * *
63306846 GGTAATTTTACCCCACGAGGGTATCTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
63306873 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGTATTTC
* *
63306900 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
* *
63306927 AGTAATTCTACCCTAGAGGTGTATTTC
1 GGTAATTCTACCCTACAGG-GTATTTC
*
63306954 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
63306981 GGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAG-GGTATTTC
63307008 GGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAG-GGTATTTC
63307035 GGTAATT
1 GGTAATT
63307042 TCACAAATCA
Statistics
Matches: 149, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
26 4 0.03
27 143 0.96
28 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:63307057 original size:27 final size:27
Alignment explanation
Indices: 63307027--63307192 Score: 134
Period size: 27 Copynumber: 6.1 Consensus size: 27
63307017 ACCCTACAGA
* * * *
63307027 GGTATTTCGGTAATTTCACAAATCAAG
1 GGTATTTTGGTAATTTTATAAACCAAG
*
63307054 GGTATTTTGGTAATTTTATAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAG
** ***
63307081 GGTATTTTGGTAATTTTATTGATTGAG
1 GGTATTTTGGTAATTTTATAAACCAAG
*
63307108 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTATAAACCAAG
** * * *
63307135 GGTATTTCAGTAATTTTGTAAATCGAG
1 GGTATTTTGGTAATTTTATAAACCAAG
*** * * *
63307162 GGTAAAATGGTAATTCTATAAATCGAG
1 GGTATTTTGGTAATTTTATAAACCAAG
63307189 GGTA
1 GGTA
63307193 AAACGATAAT
Statistics
Matches: 111, Mismatches: 28, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.39
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTATAAACCAAG
Found at i:63307057 original size:81 final size:81
Alignment explanation
Indices: 63306847--63307068 Score: 227
Period size: 81 Copynumber: 2.7 Consensus size: 81
63306837 GGGCAAAATG
* * * * ** * *
63306847 GTAATTTTACCCCACGAGG-GTATCTCGGTAATTCTACCCTATAAGGGTATTTCGATAATTCTAC
1 GTAATTCTACCCTAC-AGGTGTATTTCGATAATTCTACAATACAAGGGTATTTCGGTAATTCTAC
* *
63306911 CTTACAGGGGTATTTCA
65 CCTACAGAGGTATTTCA
* ** *
63306928 GTAATTCTACCCTAGAGGTGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGTGTATTTCGATAATTCTACAATACAAGGGTATTTCGGTAATTCTACC
*
63306993 CTACAGAGGTATTTCG
66 CTACAGAGGTATTTCA
* *
63307009 GTAATTCTACCCTACAGAG-GTATTTCGGTAATT-TCACAA-ATCAAGGGTATTTTGGTAATT
1 GTAATTCTACCCTACAG-GTGTATTTCGATAATTCT-ACAATA-CAAGGGTATTTCGGTAATT
63307069 TTATAAACCA
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
80 5 0.04
81 114 0.95
82 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGTGTATTTCGATAATTCTACAATACAAGGGTATTTCGGTAATTCTACC
CTACAGAGGTATTTCA
Found at i:63307163 original size:54 final size:54
Alignment explanation
Indices: 63307027--63307331 Score: 194
Period size: 54 Copynumber: 5.8 Consensus size: 54
63307017 ACCCTACAGA
* * * *
63307027 GGTATTTCGGTAATTTCACAAATCAAGGGTATTTTGGTAATTTTATAAACCAGG
1 GGTATTTCGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAACCAAG
* ** * *
63307081 GGTATTTTGGTAATTTTATTGATTGAGGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTCGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAACCAAG
* * *** * * *
63307135 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAACCAAG
*** * * * * *** *
63307189 GGTAAAACGATAATTCTGTAAATCGAGAGTAAAATGGTAATTCTAT----C---
1 GGTATTTCGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAACCAAG
* * * * * **
63307236 -TTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGG
1 GGTATTTCGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAACCAAG
* * * **
63307289 GGTACTTGGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
1 GGTATTTCGGTAATTTTATAAATCGAGGGTATTTTGGTAATTT
63307332 GGTAAACTAA
Statistics
Matches: 193, Mismatches: 50, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
46 30 0.16
50 2 0.01
54 161 0.83
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAACCAAG
Found at i:63307193 original size:27 final size:27
Alignment explanation
Indices: 63307144--63307234 Score: 128
Period size: 27 Copynumber: 3.4 Consensus size: 27
63307134 GGGTATTTCA
* *
63307144 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
63307171 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
63307198 ATAATTCTGTAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
63307225 GTAATTCTAT
1 GTAATTCTAT
63307235 CTTATTTCGG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:63307267 original size:27 final size:27
Alignment explanation
Indices: 63307237--63307331 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 27
63307227 AATTCTATCT
*
63307237 TATTTCGGTAATTTTACAAATCGAGGA
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
63307264 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* *
63307291 TACTTGGGTAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
*
63307318 TATTTCAGTAATTT
1 TATTTCGGTAATTT
63307332 GGTAAACTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGG
Found at i:63309772 original size:35 final size:34
Alignment explanation
Indices: 63309732--63309908 Score: 221
Period size: 35 Copynumber: 5.1 Consensus size: 34
63309722 AAAAACATCA
*
63309732 AATGCTCACAAGAGCTAGTCCAACCATAACACACC
1 AATGCTCATAAGAGCTAGTCCAACCA-AACACACC
* * *
63309767 AATGCTCATAAGATCTAGTCCAACTGAAACACGCC
1 AATGCTCATAAGAGCTAGTCCAAC-CAAACACACC
*
63309802 AATGTTCATAAGAGCTAGTCCAACCAAA-ACACGAC
1 AATGCTCATAAGAGCTAGTCCAACCAAACACAC--C
* *
63309837 AATGCCCATAAGAGCTAGTCCAACCGAAACACGCC
1 AATGCTCATAAGAGCTAGTCCAACC-AAACACACC
*
63309872 AATGCTTATAAGAGCTAGTCCAACCGAAACACACC
1 AATGCTCATAAGAGCTAGTCCAACC-AAACACACC
63309907 AA
1 AA
63309909 ACAAAGAGTA
Statistics
Matches: 123, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
33 3 0.02
34 3 0.02
35 110 0.89
36 4 0.03
37 3 0.02
ACGTcount: A:0.40, C:0.30, G:0.14, T:0.16
Consensus pattern (34 bp):
AATGCTCATAAGAGCTAGTCCAACCAAACACACC
Found at i:63309824 original size:70 final size:69
Alignment explanation
Indices: 63309732--63309908 Score: 250
Period size: 70 Copynumber: 2.5 Consensus size: 69
63309722 AAAAACATCA
* * * * *
63309732 AATGCTCACAAGAGCTAGTCCAACCATAACACACCAATGCTCATAAGATCTAGTCCAACTGAAAC
1 AATGTTCATAAGAGCTAGTCCAACCA-AACACACCAATGCCCATAAGAGCTAGTCCAACCGAAAC
63309797 ACGCC
65 ACGCC
63309802 AATGTTCATAAGAGCTAGTCCAACCAAA-ACACGACAATGCCCATAAGAGCTAGTCCAACCGAAA
1 AATGTTCATAAGAGCTAGTCCAACCAAACACAC--CAATGCCCATAAGAGCTAGTCCAACCGAAA
63309866 CACGCC
64 CACGCC
63309872 AATGCTT-ATAAGAGCTAGTCCAACCGAAACACACCAA
1 AATG-TTCATAAGAGCTAGTCCAACC-AAACACACCAA
63309909 ACAAAGAGTA
Statistics
Matches: 97, Mismatches: 5, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
68 4 0.04
69 2 0.02
70 82 0.85
71 5 0.05
72 4 0.04
ACGTcount: A:0.40, C:0.30, G:0.14, T:0.16
Consensus pattern (69 bp):
AATGTTCATAAGAGCTAGTCCAACCAAACACACCAATGCCCATAAGAGCTAGTCCAACCGAAACA
CGCC
Found at i:63311709 original size:16 final size:15
Alignment explanation
Indices: 63311688--63311717 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
63311678 AAAATGTAAG
63311688 TTAATATAACATGTTA
1 TTAATATAA-ATGTTA
63311704 TTAATATAAATGTT
1 TTAATATAAATGTT
63311718 TTTTTCAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (15 bp):
TTAATATAAATGTTA
Found at i:63315875 original size:36 final size:36
Alignment explanation
Indices: 63315826--63315899 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
63315816 GCCCTCATAC
*
63315826 CATCATGGATTCACGAGTAGCAAGCTCTATTCGTGA
1 CATCATGGATTCACGAGTAGCAAGCTCTATTCATGA
*
63315862 CATCATGGGTTCACGAGTAGCAAGCTCTATTCATGA
1 CATCATGGATTCACGAGTAGCAAGCTCTATTCATGA
63315898 CA
1 CA
63315900 AATGCCCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (36 bp):
CATCATGGATTCACGAGTAGCAAGCTCTATTCATGA
Found at i:63317855 original size:21 final size:21
Alignment explanation
Indices: 63317820--63317862 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
63317810 TGTTGTAAAT
*
63317820 TGAAAGTTTTTGATAGA-AAG
1 TGAAAGTTATTGATAGATAAG
63317840 TGAAAGATTATTGATAGATAAG
1 TGAAAG-TTATTGATAGATAAG
63317862 T
1 T
63317863 CACTTTTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 10 0.50
22 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (21 bp):
TGAAAGTTATTGATAGATAAG
Found at i:63318581 original size:33 final size:33
Alignment explanation
Indices: 63318544--63318791 Score: 187
Period size: 33 Copynumber: 7.6 Consensus size: 33
63318534 TATCCAAATG
**
63318544 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* *
63318577 GTAC-ACTTGAAAAGGAAAGGTATACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* * * *
63318609 ATACCA-TATGAAAAGGAAAGGTAGACTTTGTGT
1 GTACAACT-TGAAAAGGAAATGTACACTTTGTGT
* * * * *
63318642 ATACCACTTGAAAAGGAAAGGTACACTATATGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
** * *
63318675 GTAC-ACTTGAAAAGGTTATGTGCACTTTGAGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* ** ** * *
63318707 GTAAAAAATGAAAAGGGTATGTACACTTCGCGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* * * * * *
63318740 GTACCACTTGAAAAGGGAATATACACCTCGAGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
*
63318773 GTACAACTAGAAAAGGAAA
1 GTACAACTTGAAAAGGAAA
63318792 AGTCCATCAG
Statistics
Matches: 176, Mismatches: 35, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
32 52 0.30
33 123 0.70
34 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.27
Consensus pattern (33 bp):
GTACAACTTGAAAAGGAAATGTACACTTTGTGT
Found at i:63326172 original size:33 final size:33
Alignment explanation
Indices: 63326135--63326415 Score: 212
Period size: 33 Copynumber: 8.6 Consensus size: 33
63326125 TACCCAAATG
* ** * *
63326135 GTACAACTTGAAAAGGTTATGTACACTTCGTGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
*
63326168 GTA-CACTTGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
* * *
63326200 ATACCA-TATGAAAAGGAAGGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGAAAGGTACACTTTGTGT
* *
63326233 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGAAAGGTACACTTTGTGT
* * *
63326266 ATACCACTTGAAAAGGAAAGGTACACTATATGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
** * * *
63326299 GTA-CACTTGAAAAGGTTATGTGCACTTTGAGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
* * * * *
63326331 GTACAAATTGAAAA-GAGTATGTACACTTCGTGT
1 GTACCACTTGAAAAGGA-AAGGTACACTTTGTGT
* * * * * *
63326364 GTACCACTTGAAAAGGGAATGTGCACCTCGAGT
1 GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
* *
63326397 GTACAACTAGAAAAGGAAA
1 GTACCACTTGAAAAGGAAA
63326416 AGTCCATCAA
Statistics
Matches: 206, Mismatches: 36, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
32 52 0.25
33 152 0.74
34 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (33 bp):
GTACCACTTGAAAAGGAAAGGTACACTTTGTGT
Found at i:63335281 original size:42 final size:43
Alignment explanation
Indices: 63335166--63335325 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
63335156 ATATGTGTTA
* * * *
63335166 TCGTGTAAGACCACGTCTAGGACATTGGCATCGATTTGTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
*
63335209 TACGTGTAAGACCATGTCCGGGACATTGGCATC-ATATATGATT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
* * * * *
63335252 TCGTGTAAGACCTTGTCTGGGATAGTGGCATTGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
* * * * * *
63335295 GCATGTAAGAACACGTCTAGGACGTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCAT
63335326 TCTACGAGCT
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 26 0.27
43 41 0.43
44 28 0.29
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
Found at i:63340607 original size:48 final size:48
Alignment explanation
Indices: 63340548--63340721 Score: 208
Period size: 48 Copynumber: 3.6 Consensus size: 48
63340538 TGATATGTGT
* * * *
63340548 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGAGATGCAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATGCAA
* * *
63340596 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCATTGAGACAAG--A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATGCAA
* * * *
63340642 GCTAGTGTAAGACATGTCTGGCACATGCATCAGCATTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATGCAA
* *
63340690 GCTAGTGTAAGACTTGTCTAGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
63340722 AGCTTATTGT
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
46 39 0.37
48 62 0.58
49 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATGCAA
Found at i:63340714 original size:94 final size:95
Alignment explanation
Indices: 63340548--63340721 Score: 242
Period size: 94 Copynumber: 1.8 Consensus size: 95
63340538 TGATATGTGT
* ** * *
63340548 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGAGATGCAAGCCAGTGTAAGACATGC
1 GCTAGTGTAAGACATGTCTGGCACATGCATCAGCATCGAGAGATACAAGCCAGTGTAAGACATGC
*
63340613 CTGGGACAT-GCATCGGCATTGAGACAAGA
66 CTAGGACATGGCATCGGCATTGAGACAAGA
* * * * *
63340642 GCTAGTGTAAGACATGTCTGGCACATGCATCAGCATTGAGATATACAAGCTAGTGTAAGACTTGT
1 GCTAGTGTAAGACATGTCTGGCACATGCATCAGCATCGAGAGATACAAGCCAGTGTAAGACATGC
63340707 CTAGGACATGGCATC
66 CTAGGACATGGCATC
63340722 AGCTTATTGT
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
94 63 0.93
95 5 0.07
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGCACATGCATCAGCATCGAGAGATACAAGCCAGTGTAAGACATGC
CTAGGACATGGCATCGGCATTGAGACAAGA
Found at i:63370454 original size:194 final size:194
Alignment explanation
Indices: 63370125--63370511 Score: 704
Period size: 194 Copynumber: 2.0 Consensus size: 194
63370115 TTTAAAAATT
63370125 TATAACTAATCGTTCTTGAAACTAACTATTATCACAATGAAGGCAAGTGTACCTATCGAACAGTA
1 TATAACTAATCGTTCTTGAAACTAACTATTATCACAATGAAGGCAAGTGTACCTATCGAACAGTA
* *
63370190 GTATAGCTTAGCAAGACCAGATTGTCGAACCCAAAAGAACCAAGAGTACTCGTAATTACTTTCTT
66 ATATAGCTTAGCAAGACCAGATTGTCGAACCCAAAAGAACCAAGAGTACTAGTAATTACTTTCTT
*
63370255 TTTATTATCTAGCCTAAAAATTAAGGGATTTTTTTATCTAAACTAATTAACTAAACTAAGGGTC
131 TTTATTATCTAGCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTAAGGGTC
*
63370319 TATAACTAATCGTTCTTGAAACTAACTATTATCACGATGAAGGCAAGTGTACCTATCGAACAGTA
1 TATAACTAATCGTTCTTGAAACTAACTATTATCACAATGAAGGCAAGTGTACCTATCGAACAGTA
* *
63370384 ATATAGCTTTAGCAAGACCAGATTGTCGAACCCAAAGGAACCAATAGTACTAGTAATTACTTT-T
66 ATATAGC-TTAGCAAGACCAGATTGTCGAACCCAAAAGAACCAAGAGTACTAGTAATTACTTTCT
63370448 TTTTATTATCTAGCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTAAGGGT
130 TTTTATTATCTAGCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTAAGGGT
63370512 GCACAGAGAG
Statistics
Matches: 186, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
194 134 0.72
195 52 0.28
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (194 bp):
TATAACTAATCGTTCTTGAAACTAACTATTATCACAATGAAGGCAAGTGTACCTATCGAACAGTA
ATATAGCTTAGCAAGACCAGATTGTCGAACCCAAAAGAACCAAGAGTACTAGTAATTACTTTCTT
TTTATTATCTAGCCTAAAAATTAAGGGATTTGTTTATCTAAACTAATTAACTAAACTAAGGGTC
Found at i:63402016 original size:39 final size:39
Alignment explanation
Indices: 63401972--63402106 Score: 234
Period size: 39 Copynumber: 3.5 Consensus size: 39
63401962 TGGTGAGCTT
63401972 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
1 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
63402011 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
1 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
*
63402050 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTT
1 CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
* * *
63402089 CAGCTAGACTTTGGGCTT
1 CAGTTAGCCTTCGGGCTT
63402107 TAGATCCCGA
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.13, C:0.27, G:0.24, T:0.36
Consensus pattern (39 bp):
CAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTC
Found at i:63414314 original size:227 final size:227
Alignment explanation
Indices: 63413913--63414321 Score: 683
Period size: 227 Copynumber: 1.8 Consensus size: 227
63413903 AATATTGCAT
* *
63413913 TGATTTACTGATTTTATCTGAGTTTTTTTATGTTATCTTGAATTATGGAATGCTTGTATGTTCTT
1 TGATTCACTGATTTTATCTGAGATTTTTTATGTTATCTTGAATTATGGAATGCTTGTATGTTCTT
* * * * *
63413978 AGGTCTTATGTAGCCTTTTTTCCATGAAAATTGAGCTTCCTTAGAAGTAGAGATGCAAAAAGGTT
66 AAGTCTTATGTAGCCTTTTTGCCATGAAAATTGAACTTCCTTAGAAGTAGACATACAAAAAGGTT
* *
63414043 TTGTTGGGAAATGTGTCTATATTCTACTAAACATGTAATTGTTTTCTATTTACATAATCAGAAAA
131 TTGTTGGGAAATGTGTCCATATTATACTAAACATGTAATTGTTTTCTATTTACATAATCAGAAAA
63414108 TTTTTGTTCATAAGGTAGCTCAAATGCAATTA
196 TTTTTGTTCATAAGGTAGCTCAAATGCAATTA
*
63414140 TGATTCACTGATTTTATCTGAGATTTTTTATGTTATCTTGAGTTATGGAATGCTTGTATGTTCTT
1 TGATTCACTGATTTTATCTGAGATTTTTTATGTTATCTTGAATTATGGAATGCTTGTATGTTCTT
* **
63414205 AAGTCTTATGTATCCTTTTTGCCATGAAAATTGAACTTCCTTAGAAGTAGACATACATGAAGGTT
66 AAGTCTTATGTAGCCTTTTTGCCATGAAAATTGAACTTCCTTAGAAGTAGACATACAAAAAGGTT
* *
63414270 TTGTTGGGAAATGTGTCCATATTATAGTGAACATGTAATTGTTTTCTATTTA
131 TTGTTGGGAAATGTGTCCATATTATACTAAACATGTAATTGTTTTCTATTTA
63414322 TTTGAACGAT
Statistics
Matches: 167, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
227 167 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.44
Consensus pattern (227 bp):
TGATTCACTGATTTTATCTGAGATTTTTTATGTTATCTTGAATTATGGAATGCTTGTATGTTCTT
AAGTCTTATGTAGCCTTTTTGCCATGAAAATTGAACTTCCTTAGAAGTAGACATACAAAAAGGTT
TTGTTGGGAAATGTGTCCATATTATACTAAACATGTAATTGTTTTCTATTTACATAATCAGAAAA
TTTTTGTTCATAAGGTAGCTCAAATGCAATTA
Found at i:63414391 original size:16 final size:16
Alignment explanation
Indices: 63414370--63414400 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63414360 TTCACTATTG
*
63414370 TGTCTTTTTTATTTTC
1 TGTCTTTTATATTTTC
63414386 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
63414401 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.06, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:63418166 original size:13 final size:13
Alignment explanation
Indices: 63418125--63418172 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
63418115 ATAATGAGTC
63418125 ATTATTTATCAAT
1 ATTATTTATCAAT
* *
63418138 ATGTTTTTGGTCAAT
1 AT-TATTT-ATCAAT
63418153 ATTATTTATCAAT
1 ATTATTTATCAAT
63418166 AATTATT
1 -ATTATT
63418173 GACTTGAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 7 0.25
14 14 0.50
15 7 0.25
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.54
Consensus pattern (13 bp):
ATTATTTATCAAT
Found at i:63419034 original size:21 final size:21
Alignment explanation
Indices: 63419010--63419049 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
63419000 TATTAAAGAT
63419010 TTAAATAACTTTTTT-TAATAA
1 TTAAATAA-TTTTTTATAATAA
*
63419031 TTAAATGATTTTTTATAAT
1 TTAAATAATTTTTTATAAT
63419050 TTTTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
TTAAATAATTTTTTATAATAA
Found at i:63423079 original size:22 final size:22
Alignment explanation
Indices: 63423036--63423079 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
63423026 CTTCCTGCAT
* *
63423036 TAAAATCCAACCAAATATAGTA
1 TAAAATCCAACCAAAAACAGTA
* *
63423058 TAAAATGCAGCCAAAAACAGTA
1 TAAAATCCAACCAAAAACAGTA
63423080 AATTTAGCAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.18, G:0.09, T:0.18
Consensus pattern (22 bp):
TAAAATCCAACCAAAAACAGTA
Found at i:63423167 original size:31 final size:32
Alignment explanation
Indices: 63423129--63423195 Score: 127
Period size: 31 Copynumber: 2.1 Consensus size: 32
63423119 AGCATACTTC
63423129 AAATTTAACGAAAGATATATGATATAATTAA-
1 AAATTTAACGAAAGATATATGATATAATTAAT
63423160 AAATTTAACGAAAGATATATGATATAATTAAT
1 AAATTTAACGAAAGATATATGATATAATTAAT
63423192 AAAT
1 AAAT
63423196 AAAGTATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (32 bp):
AAATTTAACGAAAGATATATGATATAATTAAT
Found at i:63423859 original size:14 final size:14
Alignment explanation
Indices: 63423840--63423896 Score: 107
Period size: 14 Copynumber: 4.1 Consensus size: 14
63423830 TGATGAATTG
63423840 AATTAAACAATTAT
1 AATTAAACAATTAT
63423854 AATTAAACAATTAT
1 AATTAAACAATTAT
63423868 AATTAAACAATTAT
1 AATTAAACAATTAT
63423882 AATTAAAC-ATTAT
1 AATTAAACAATTAT
63423895 AA
1 AA
63423897 ATATTTAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
13 7 0.16
14 36 0.84
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:63424036 original size:10 final size:9
Alignment explanation
Indices: 63424004--63424038 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
63423994 AAATTTTAAA
63424004 TATTTTTTT
1 TATTTTTTT
*
63424013 TATTATTTT
1 TATTTTTTT
63424022 TATTTTATTT
1 TATTTT-TTT
63424032 TATTTTT
1 TATTTTT
63424039 ATAAAGAACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (9 bp):
TATTTTTTT
Found at i:63428338 original size:9 final size:9
Alignment explanation
Indices: 63428326--63428416 Score: 62
Period size: 9 Copynumber: 9.9 Consensus size: 9
63428316 ATTATTTATC
63428326 TTATGTAAA
1 TTATGTAAA
63428335 TTATGTAAGA
1 TTATGTAA-A
*
63428345 TATGATACGTCA-
1 T-T-AT--GTAAA
63428357 TTATGT-A-
1 TTATGTAAA
*
63428364 TTATGTAAG
1 TTATGTAAA
63428373 TTATGTAAA
1 TTATGTAAA
*
63428382 TTATGTAAG
1 TTATGTAAA
* **
63428391 TTATTTATC
1 TTATGTAAA
63428400 TTATGTAAA
1 TTATGTAAA
63428409 TTATGTAA
1 TTATGTAA
63428417 GATATGATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
7 7 0.11
8 3 0.05
9 44 0.67
10 4 0.06
11 2 0.03
12 3 0.05
14 3 0.05
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.46
Consensus pattern (9 bp):
TTATGTAAA
Found at i:63428657 original size:12 final size:13
Alignment explanation
Indices: 63428614--63428655 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
63428604 TTTTTCGTGA
63428614 TTAAAATAAAA--
1 TTAAAATAAAATT
63428625 -TAAAATAAAATAT
1 TTAAAATAAAAT-T
63428638 TTAAAATAAAATT
1 TTAAAATAAAATT
63428651 TTAAA
1 TTAAA
63428656 TACAATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.37
13 6 0.22
14 11 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
TTAAAATAAAATT
Found at i:63428662 original size:12 final size:12
Alignment explanation
Indices: 63428614--63428665 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
63428604 TTTTTCGTGA
63428614 TTAAAATAAAA-
1 TTAAAATAAAAT
63428625 -TAAAATAAAATAT
1 TTAAAAT-AAA-AT
63428638 TTAAAATAAAAT
1 TTAAAATAAAAT
* *
63428650 TTTAAATACAAT
1 TTAAAATAAAAT
63428662 TTAA
1 TTAA
63428666 TTTAATTAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
10 6 0.18
11 3 0.09
12 16 0.47
13 3 0.09
14 6 0.18
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (12 bp):
TTAAAATAAAAT
Found at i:63428696 original size:48 final size:48
Alignment explanation
Indices: 63428639--63428787 Score: 139
Period size: 48 Copynumber: 3.2 Consensus size: 48
63428629 ATAAAATATT
*
63428639 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAA
1 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAA
* * * * ** * * *
63428687 TAAAATAAAA--GTAGACAAAATATT--TTTCCTGA-TTAAAAT-AAAA
1 TAAAATAAAATTTTAAATACAAT-TTAATTTAATTAGGTAAATTAAAAA
* *
63428730 TAAAATAAAATTTTTAATACAATTTAATTTAATTAGGTAAATTAAAAT
1 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAA
63428778 TAAAATAAAA
1 TAAAATAAAA
63428788 GTAGACAAAA
Statistics
Matches: 73, Mismatches: 21, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
43 14 0.19
44 6 0.08
45 11 0.15
46 12 0.16
47 7 0.10
48 23 0.32
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (48 bp):
TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAA
Found at i:63428730 original size:43 final size:43
Alignment explanation
Indices: 63428683--63428828 Score: 125
Period size: 43 Copynumber: 3.3 Consensus size: 43
63428673 AGGTAATTTA
* *
63428683 AAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAAT
1 AAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAATT
* * * * * *
63428726 AAAATAAAATAAAATTTTTA-ATACAAT-TTAATTTAATTAGGTAAATT
1 AAAATAAAATAAAA---GTAGACAAAATATT--TTTCATGA-TTAAATT
* *
63428773 AAAATTAAAATAAAAGTAGACAAAATATTTATCGTGATTAAATT
1 AAAA-TAAAATAAAAGTAGACAAAATATTTTTCATGATTAAATT
63428817 AAAATAAAATAA
1 AAAATAAAATAA
63428829 TATCTTCAAA
Statistics
Matches: 78, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
43 22 0.28
44 12 0.15
45 11 0.14
46 12 0.15
47 11 0.14
48 10 0.13
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (43 bp):
AAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAATT
Found at i:63428737 original size:105 final size:104
Alignment explanation
Indices: 63428560--63428869 Score: 421
Period size: 105 Copynumber: 3.1 Consensus size: 104
63428550 AAGAATGATT
*
63428560 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGAGAAAATATTTTTCGTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATT-AAATAAAA
63428625 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
65 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
*
63428665 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGA-T---TAAAAT
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAATAAAAT
63428726 AAAAT-AAA-A--TAAAAT----TTTT-AATACAATTTA
66 AAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
* * *
63428756 ATTTAATTAGGTAAATTAAAATTAAAATAAAAGTAGACAAAATATTTATCGTGATTAAATTAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAA-TAAAA
* * * * *
63428821 TAAAATAATATCTTCAAAATAAAACTTTAATTACAATTTA
65 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
63428861 ATTTAATTA
1 ATTTAATTA
63428870 ATAAGGTTAA
Statistics
Matches: 180, Mismatches: 11, Indels: 28
0.82 0.05 0.13
Matches are distributed among these distances:
91 61 0.34
92 5 0.03
96 17 0.09
97 2 0.01
98 1 0.01
99 3 0.02
100 16 0.09
104 4 0.02
105 71 0.39
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (104 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAATAAAAT
AAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
Found at i:63428742 original size:91 final size:91
Alignment explanation
Indices: 63428639--63428828 Score: 326
Period size: 91 Copynumber: 2.1 Consensus size: 91
63428629 ATAAAATATT
*
63428639 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACA
1 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAATAAAATAAAAGTAGACA
*
63428704 AAATATTTTTCCTGATTAAAATAAAA
66 AAATATTTATCCTGATTAAAATAAAA
* *
63428730 TAAAATAAAATTTTTAATACAATTTAATTTAATTAGGTAAATTAAAATTAAAATAAAAGTAGACA
1 TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAATAAAATAAAAGTAGACA
* *
63428795 AAATATTTATCGTGATTAAATTAAAA
66 AAATATTTATCCTGATTAAAATAAAA
63428821 TAAAATAA
1 TAAAATAA
63428829 TATCTTCAAA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 93 1.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (91 bp):
TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAAATTAAAAATAAAATAAAAGTAGACA
AAATATTTATCCTGATTAAAATAAAA
Found at i:63428803 original size:48 final size:47
Alignment explanation
Indices: 63428660--63428803 Score: 124
Period size: 48 Copynumber: 3.1 Consensus size: 47
63428650 TTTAAATACA
*
63428660 ATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAAT
1 ATTTAATTTAATTAGGTAAATT-AAAATAAAATAAAAGTAGACAAAAT
* * ** *
63428708 ATTT--TTCCTGATTA---AAA-TAAAATAAAATAAAATTTTTA-ATACA-
1 ATTTAATT--TAATTAGGTAAATTAAAATAAAATAAAA-GTAGACA-AAAT
63428751 ATTTAATTTAATTAGGTAAATTAAAATTAAAATAAAAGTAGACAAAAT
1 ATTTAATTTAATTAGGTAAATTAAAA-TAAAATAAAAGTAGACAAAAT
63428799 ATTTA
1 ATTTA
63428804 TCGTGATTAA
Statistics
Matches: 72, Mismatches: 11, Indels: 26
0.66 0.10 0.24
Matches are distributed among these distances:
43 24 0.33
44 5 0.07
45 4 0.06
46 5 0.07
47 9 0.12
48 25 0.35
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.36
Consensus pattern (47 bp):
ATTTAATTTAATTAGGTAAATTAAAATAAAATAAAAGTAGACAAAAT
Found at i:63432767 original size:206 final size:210
Alignment explanation
Indices: 63432469--63432890 Score: 683
Period size: 206 Copynumber: 2.0 Consensus size: 210
63432459 AAATATGCTT
*
63432469 TTCCTTTGAACCCAAAAATTATCGAGGAGATGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
1 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
* *
63432534 GGAAAAAGTGGTTTTTTTCAGATGTCGAATTGGGGAATTTTAGAGATGAGCAGAT-G-A-GA-AG
66 GGAAAAAGGGGTTCTTTTCAGATGTCGAATTGGGGAATTTTAGAGATGAGCAGATAGAATGACAG
* *
63432595 AGAAGAACTTACAGGTGAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGTTTTTTTCGGATGTC
131 AGAAGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGCTTTTTTCGGATGTC
63432660 AAATTGGGGAAAAAC
196 AAATTGGGGAAAAAC
63432675 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
1 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
*
63432740 GGCAAAAGGGGTTCTTTTC-GAATGTCGAATTGGGGAATTTTAGAGATGAGCAGATGAGCAGAAA
66 GGAAAAAGGGGTTCTTTTCAG-ATGTCGAATTGGGGAATTTTAGAGATGAGCAGAT----AG-AA
*
63432804 TGAGCAGAGAAGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAGGGGCTTTTTTC
125 TGA-CAGAGAAGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGCTTTTTTC
63432869 GGATGTCAAATTGGGGAAAAAC
189 GGATGTCAAATTGGGGAAAAAC
63432891 AAGTGATAAT
Statistics
Matches: 198, Mismatches: 7, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
205 1 0.01
206 114 0.58
211 1 0.01
213 1 0.01
214 2 0.01
216 79 0.40
ACGTcount: A:0.37, C:0.11, G:0.28, T:0.24
Consensus pattern (210 bp):
TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
GGAAAAAGGGGTTCTTTTCAGATGTCGAATTGGGGAATTTTAGAGATGAGCAGATAGAATGACAG
AGAAGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGCTTTTTTCGGATGTC
AAATTGGGGAAAAAC
Found at i:63433769 original size:21 final size:21
Alignment explanation
Indices: 63433743--63433816 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 21
63433733 CTAAACTTTA
63433743 AACCCTAAACCA-TGTACCCTT
1 AACCCTAAACCATTG-ACCCTT
* *
63433764 AACCCTTAACCCTTGACCCTT
1 AACCCTAAACCATTGACCCTT
* * * *
63433785 AACTCCTAGACCTTTAACCTTT
1 AAC-CCTAAACCATTGACCCTT
63433807 AACCCCTAAA
1 AA-CCCTAAA
63433817 TCTCTAAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
21 19 0.45
22 22 0.52
23 1 0.02
ACGTcount: A:0.31, C:0.38, G:0.04, T:0.27
Consensus pattern (21 bp):
AACCCTAAACCATTGACCCTT
Found at i:63433777 original size:7 final size:7
Alignment explanation
Indices: 63433715--63433840 Score: 67
Period size: 7 Copynumber: 17.3 Consensus size: 7
63433705 CAACTCATAG
63433715 CCCTTAGA
1 CCCTTA-A
63433723 CCCTTAA
1 CCCTTAA
*
63433730 CCCCTAA
1 CCCTTAA
* *
63433737 ACTTTAAA
1 CCCTT-AA
*
63433745 CCCTAAA
1 CCCTTAA
*
63433752 CCATGT-A
1 CCCT-TAA
63433759 CCCTTAA
1 CCCTTAA
63433766 CCCTTAA
1 CCCTTAA
*
63433773 CCCTTGA
1 CCCTTAA
63433780 CCCTTAA
1 CCCTTAA
63433787 CTCC-TAGA
1 C-CCTTA-A
*
63433795 CCTTTAA
1 CCCTTAA
*
63433802 CCTTTAA
1 CCCTTAA
*
63433809 CCCCTAA
1 CCCTTAA
**
63433816 ATCTCTAA
1 CCCT-TAA
*
63433824 ACCTTAA
1 CCCTTAA
63433831 CCCTTGAA
1 CCCTT-AA
63433839 CC
1 CC
63433841 ATAAATCATA
Statistics
Matches: 90, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
6 1 0.01
7 63 0.70
8 26 0.29
ACGTcount: A:0.30, C:0.38, G:0.04, T:0.28
Consensus pattern (7 bp):
CCCTTAA
Found at i:63433801 original size:15 final size:14
Alignment explanation
Indices: 63433765--63433803 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
63433755 TGTACCCTTA
*
63433765 ACCCTTAACCCTTG
1 ACCCTTAACCCTAG
63433779 ACCCTTAACTCCTAG
1 ACCCTTAAC-CCTAG
*
63433794 ACCTTTAACC
1 ACCCTTAACC
63433804 TTTAACCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.26, C:0.41, G:0.05, T:0.28
Consensus pattern (14 bp):
ACCCTTAACCCTAG
Found at i:63433830 original size:29 final size:28
Alignment explanation
Indices: 63433767--63433840 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
63433757 TACCCTTAAC
* * * *
63433767 CCTTAACCCTTGACCCTTAACTCCTAGA
1 CCTTAACCCTTAACCCCTAAATCCTAAA
*
63433795 CCTTTAACCTTTAACCCCTAAATCTCTAAA
1 CC-TTAACCCTTAACCCCTAAATC-CTAAA
63433825 CCTTAACCCTTGAACC
1 CCTTAACCCTT-AACC
63433841 ATAAATCATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
28 2 0.05
29 25 0.68
30 10 0.27
ACGTcount: A:0.28, C:0.38, G:0.04, T:0.30
Consensus pattern (28 bp):
CCTTAACCCTTAACCCCTAAATCCTAAA
Found at i:63433920 original size:15 final size:14
Alignment explanation
Indices: 63433900--63433939 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
63433890 TATTAACTCA
63433900 TAAACCATAAACCCC
1 TAAACCATAAA-CCC
*
63433915 TAAACCTTAAACCC
1 TAAACCATAAACCC
63433929 TAAACCCATAA
1 TAAA-CCATAA
63433940 TTCATAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:63433947 original size:22 final size:22
Alignment explanation
Indices: 63433897--63433954 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
63433887 AGATATTAAC
*
63433897 TCATAAACCATAAACCCCTAAA
1 TCATAAACCATAAACCCATAAA
* * * *
63433919 CCTTAAACCCTAAACCCATAAT
1 TCATAAACCATAAACCCATAAA
*
63433941 TCATAAACCTTAAA
1 TCATAAACCATAAA
63433955 ATATTAACTC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (22 bp):
TCATAAACCATAAACCCATAAA
Found at i:63433988 original size:14 final size:14
Alignment explanation
Indices: 63433969--63434019 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
63433959 TAACTCATCA
63433969 TAAACTATAAACCC
1 TAAACTATAAACCC
*
63433983 TAAACTATATA-CC
1 TAAACTATAAACCC
* *
63433996 TAAACCATAAACCT
1 TAAACTATAAACCC
63434010 TAAACTATAA
1 TAAACTATAA
63434020 TGATAAGTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 11 0.35
14 20 0.65
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAACTATAAACCC
Found at i:63434386 original size:41 final size:41
Alignment explanation
Indices: 63434300--63434632 Score: 409
Period size: 41 Copynumber: 8.1 Consensus size: 41
63434290 TTTGTGGCAC
* * * * * *
63434300 TTTTTGAAAAAACGCCGCTATAAAT-AGAGCAATAGCGGTG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
* *
63434340 TTTTTCAAAAAGCGCCGCTACAGATCTAAGCATTAGCGGCG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
* *
63434381 TTTTTCAAAAAAGCGCTGCTATAGATTTGAGCATTAGCGGCG
1 TTTTTC-AAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
*
63434423 TTTTTCAATAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
* * *
63434464 TTTTTCAATAAGCGCCGCTATAGATCTAAGCATTAGCGGTG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
** *
63434505 TTTTT-AAAAATGCGTTGCCATAGATCTGAGCATTAGCGGCG
1 TTTTTCAAAAA-GCGCCGCTATAGATCTGAGCATTAGCGGCG
* * *
63434546 TTTTTAAAAAAGCGCCGCCATATATCTGAGCATTAGCGGCG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
* * * *
63434587 TTGTTCATAAAGCGCCACTATAGATATGAGCATTAGCGGCG
1 TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
*
63434628 CTTTT
1 TTTTT
63434633 GGCAAAACGC
Statistics
Matches: 254, Mismatches: 35, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
40 25 0.10
41 187 0.74
42 42 0.17
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (41 bp):
TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGCGGCG
Found at i:63435985 original size:39 final size:40
Alignment explanation
Indices: 63435918--63435996 Score: 151
Period size: 39 Copynumber: 2.0 Consensus size: 40
63435908 GGAATGGTAA
63435918 ACTCATACTAAATTTTTTTATGGGTAAACTATAAAAATGT
1 ACTCATACTAAATTTTTTTATGGGTAAACTATAAAAATGT
63435958 ACTCATACTAAA-TTTTTTATGGGTAAACTATAAAAATGT
1 ACTCATACTAAATTTTTTTATGGGTAAACTATAAAAATGT
63435997 CACCCAACTA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
39 27 0.69
40 12 0.31
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (40 bp):
ACTCATACTAAATTTTTTTATGGGTAAACTATAAAAATGT
Found at i:63437319 original size:26 final size:26
Alignment explanation
Indices: 63437289--63437344 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
63437279 GGAAGAGTTT
63437289 TACTGTACATGTTTACCCTTGAAGCA
1 TACTGTACATGTTTACCCTTGAAGCA
*
63437315 TACTGTTCATGTTTACCCTTGAAGCA
1 TACTGTACATGTTTACCCTTGAAGCA
63437341 TACT
1 TACT
63437345 ACTCTACTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (26 bp):
TACTGTACATGTTTACCCTTGAAGCA
Found at i:63443681 original size:13 final size:13
Alignment explanation
Indices: 63443673--63443697 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63443663 CGAAATTAAT
63443673 AATAAAAATAAAA
1 AATAAAAATAAAA
63443686 AATAAAAATAAA
1 AATAAAAATAAA
63443698 CTTTCTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:63445801 original size:55 final size:55
Alignment explanation
Indices: 63445742--63445848 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
63445732 AAAATTTGAC
** *
63445742 AGGTTCGACCACGGGTGTTCGACACCGGCGTGTCGCACGCCCGTGCTATTTTATT
1 AGGTTCGACCACGGGTCCTCCACACCGGCGTGTCGCACGCCCGTGCTATTTTATT
* * * * *
63445797 AGGTTCGTCCATGGTTCCTCCACACGGGCGTGTCGCACGCCCGTGTTATTTT
1 AGGTTCGACCACGGGTCCTCCACACCGGCGTGTCGCACGCCCGTGCTATTTT
63445849 GGCAGGCTCG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.13, C:0.30, G:0.28, T:0.29
Consensus pattern (55 bp):
AGGTTCGACCACGGGTCCTCCACACCGGCGTGTCGCACGCCCGTGCTATTTTATT
Found at i:63453863 original size:20 final size:21
Alignment explanation
Indices: 63453838--63453876 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
63453828 CCCAATGTAC
63453838 TTTTCATATACA-CATATAAT
1 TTTTCATATACATCATATAAT
*
63453858 TTTTCATTTACATCATATA
1 TTTTCATATACATCATATA
63453877 TGATTTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTCATATACATCATATAAT
Found at i:63454103 original size:43 final size:42
Alignment explanation
Indices: 63454048--63454214 Score: 178
Period size: 43 Copynumber: 4.0 Consensus size: 42
63454038 ATATCGTACA
*
63454048 ATGCCAACATCCCAGACGTGGTCTTACATGCTATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACG-TATCACATATCG
* *
63454091 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGTATCACATATCG
* * ** * *
63454132 ATGTCGATGTCCCGGACATGGTCTTACACGTGATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGT-ATCACATATCG
* *
63454175 ATGCCAACATCCAAGACGTGGTCTTACACGAATCACATAT
1 ATGCCAACATCCCAGACGTGGTCTTACACGTATCACATAT
63454215 AGGAAATCTT
Statistics
Matches: 100, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
41 24 0.24
42 26 0.26
43 49 0.49
44 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTATCACATATCG
Found at i:63465657 original size:13 final size:13
Alignment explanation
Indices: 63465639--63465663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63465629 TATGGTCTAC
63465639 GATTTCGCGAAAT
1 GATTTCGCGAAAT
63465652 GATTTCGCGAAA
1 GATTTCGCGAAA
63465664 ATTTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (13 bp):
GATTTCGCGAAAT
Found at i:63467126 original size:50 final size:51
Alignment explanation
Indices: 63467005--63467193 Score: 222
Period size: 50 Copynumber: 3.8 Consensus size: 51
63466995 TGAGGCCACA
* * *
63467005 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* * ** *
63467056 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* * * ***
63467106 TGTGTTGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TTTG-TCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
*
63467155 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
63467194 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 38 0.32
50 45 0.38
51 34 0.29
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
Found at i:63471828 original size:50 final size:50
Alignment explanation
Indices: 63471753--63471987 Score: 346
Period size: 50 Copynumber: 4.7 Consensus size: 50
63471743 ATCTATTGTG
63471753 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTT
*
63471803 AGGTCACGAGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTT
* *
63471853 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTT
* * ** **
63471903 AGGTCACGTGTGTTGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTT
* ***
63471953 -TGTCGTATGTGTAGTACTAAGTGCAGGCTACTATG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATG
63471988 CGTACCAGAT
Statistics
Matches: 170, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 30 0.18
50 140 0.82
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTT
Found at i:63475861 original size:27 final size:27
Alignment explanation
Indices: 63475829--63475880 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
63475819 TTAAGACCCC
63475829 AGTTTGTAAAAGTACCAAAATACCCTT
1 AGTTTGTAAAAGTACCAAAATACCCTT
* * *
63475856 AGTTTGTAAAATTACCGAATTACCC
1 AGTTTGTAAAAGTACCAAAATACCC
63475881 CTATAAGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
AGTTTGTAAAAGTACCAAAATACCCTT
Done.