Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 192 of 276
Found at i:63479249 original size:193 final size:193
Alignment explanation
Indices: 63478920--63479293 Score: 541
Period size: 193 Copynumber: 1.9 Consensus size: 193
63478910 CTGAATATAG
* * * *
63478920 TGTAACACCCCTAACCTCCATCTGTCGTCAGAATAGGGTTTCAGAATATTACCTAAACTTTAAGA
1 TGTAACACCCCTAACCTCCATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
** * *
63478985 ATGTTTTACAAATAATCTATGTAAATTACTATTCATTAACCGAGATCATTCAAAACATCCCTGAA
66 ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
* * * * * * *
63479050 TTGGACCTTGAAGGCCTAATACGAGCATTAGATTCGAGTCGAGACTTAATCGGGCACTCCAAA
131 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATCGGGCACTCCAAA
* * *
63479113 TGTAACACCCCTAACCTGCATCTATCGTCAGAATAGGGTTTCAGAGCAATACCGAAACTTTCAGA
1 TGTAACACCCCTAACCTCCATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
* * * *
63479178 ACATTTTACAAATAATTTATGTAAATTACTATTTATTAACCAAGATCATTAAAAACGTCCCTTAA
66 ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
*
63479243 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGGGACTTAATC
131 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATC
63479294 AGGAACTCTA
Statistics
Matches: 158, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
193 158 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (193 bp):
TGTAACACCCCTAACCTCCATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATCGGGCACTCCAAA
Found at i:63481072 original size:13 final size:13
Alignment explanation
Indices: 63481054--63481078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63481044 GATATTATAT
63481054 GTGTGAAAATTTC
1 GTGTGAAAATTTC
63481067 GTGTGAAAATTT
1 GTGTGAAAATTT
63481079 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:63482350 original size:43 final size:44
Alignment explanation
Indices: 63482192--63482355 Score: 171
Period size: 43 Copynumber: 3.8 Consensus size: 44
63482182 ATAGGATTCT
* *
63482192 GATATGTGA-TTTCATGTAAGACCACGTCTGGGAC-GTTGGAATC
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACAG-TGGCATC
* * * *
63482235 GATTTGTGATTTACATGTAAGACCATGTTTGGGACA-TCGGCATC
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACAGT-GGCATC
* **
63482279 G-TATATGAGTT-TGTGTAAGACC-CTGTCTGGGACAGTGGCATC
1 GATATGTGAGTTACATGTAAGACCAC-GTCTGGGACAGTGGCATC
63482321 GATATGTGA-TTACATGTAAGACCACGTCTGGGACA
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACA
63482356 TTAGCGTTGT
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 27 0.28
43 42 0.43
44 29 0.30
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (44 bp):
GATATGTGAGTTACATGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:63490619 original size:157 final size:157
Alignment explanation
Indices: 63490333--63490648 Score: 623
Period size: 157 Copynumber: 2.0 Consensus size: 157
63490323 CCAGGGGTTA
*
63490333 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACTAT
1 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
63490398 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
66 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
63490463 GGATTAAATCATTAAAGGTGTAAATCT
131 GGATTAAATCATTAAAGGTGTAAATCT
63490490 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
1 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
63490555 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
66 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
63490620 GGATTAAATCATTAAAGGTGTAAATCT
131 GGATTAAATCATTAAAGGTGTAAATCT
63490647 AT
1 AT
63490649 GGGTTTTATT
Statistics
Matches: 158, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
157 158 1.00
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (157 bp):
ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
GGATTAAATCATTAAAGGTGTAAATCT
Found at i:63496005 original size:47 final size:44
Alignment explanation
Indices: 63495937--63496199 Score: 183
Period size: 47 Copynumber: 5.6 Consensus size: 44
63495927 TTTGTGCGCT
* *
63495937 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TA-TATGAGAGCC
* ** * *
63495983 AGTGTAAGACCATGTCTGGGACATGGCATCGATACAGAAATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-A-GCCTATATGAGAGCC
* * *
63496031 AGAGTAAGACATGTTTGGGACATGCATCAGCCTCGACA-GAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT--ATATGAG--AGCC
* * * * *
63496078 AGTGTAAGACGTGTCTGGGACACGCATC-GGCTA-A-GAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTATATGA---GAGCC
*
63496122 AGTGTAAGACATGTCTGGGACATGCATCAGCGCGCATGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCA--GC-C-TATATGAGAGCC
63496170 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
63496200 GGCAATTTAT
Statistics
Matches: 170, Mismatches: 27, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
43 3 0.02
44 30 0.18
45 4 0.02
46 20 0.12
47 55 0.32
48 32 0.19
49 17 0.10
50 7 0.04
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTATATGAGAGCC
Found at i:63502535 original size:15 final size:15
Alignment explanation
Indices: 63502515--63502543 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63502505 TTTTAGATTT
63502515 TTTAAAAAAATTAAA
1 TTTAAAAAAATTAAA
63502530 TTTAAAAAAATTAA
1 TTTAAAAAAATTAA
63502544 TAAAAGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TTTAAAAAAATTAAA
Found at i:63513298 original size:16 final size:16
Alignment explanation
Indices: 63513279--63513310 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63513269 CAATTTTTAT
*
63513279 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
63513295 AAAATCTTTGTTTTTG
1 AAAATCTTTGTTTTTG
63513311 TAAACCCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.59
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:63514353 original size:27 final size:28
Alignment explanation
Indices: 63514299--63514358 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
63514289 TGTGACAGTT
* *
63514299 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGATACAAATAATCGTAGCAGAGCC
* *
63514327 ACCAGAT-CAAATAATTGTAGCATAGCC
1 ACCAGATACAAATAATCGTAGCAGAGCC
63514354 ACCAG
1 ACCAG
63514359 GACGCTTCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (28 bp):
ACCAGATACAAATAATCGTAGCAGAGCC
Found at i:63521448 original size:19 final size:19
Alignment explanation
Indices: 63521424--63521463 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
63521414 TGTGCCATCG
*
63521424 TAAATTCATAGGCATAACT
1 TAAATTCATAAGCATAACT
*
63521443 TAAATTTATAAGCATAACT
1 TAAATTCATAAGCATAACT
63521462 TA
1 TA
63521464 CACATTTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAATTCATAAGCATAACT
Found at i:63532957 original size:46 final size:45
Alignment explanation
Indices: 63532907--63533096 Score: 156
Period size: 46 Copynumber: 4.1 Consensus size: 45
63532897 GCTAGTGTAA
*
63532907 GACAT-CATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 GACATGCATCGACCACA-GATGAGAGCCAGTGTAAGA-CATGTCTGG
* * * * **
63532953 GACATGGCATCG-GCATTAAGACGAGAGCTAGTGTAAGACATGTCTAA
1 GACAT-GCATCGACCA--CAGATGAGAGCCAGTGTAAGACATGTCTGG
* *
63533000 GACATGCATCTACCTCGAGATGTA-AGCCAGTGTAAGACATGTCTGG
1 GACATGCATCGACCAC-AGATG-AGAGCCAGTGTAAGACATGTCTGG
* * *
63533046 GACATGCATCGACTAC-GA-GATGTGTCAGTGTAAGACCATGTCTGG
1 GACATGCATCGACCACAGATGA-GAGCCAGTGTAAGA-CATGTCTGG
63533091 GACATG
1 GACATG
63533097 GCATTGGCAC
Statistics
Matches: 114, Mismatches: 20, Indels: 21
0.74 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.11
45 15 0.13
46 46 0.40
47 16 0.14
48 21 0.18
49 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (45 bp):
GACATGCATCGACCACAGATGAGAGCCAGTGTAAGACATGTCTGG
Found at i:63540720 original size:46 final size:45
Alignment explanation
Indices: 63540585--63540804 Score: 182
Period size: 46 Copynumber: 4.8 Consensus size: 45
63540575 TTATTTGTGT
* *
63540585 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GAT-AGA
* * * * *
63540631 GCCAGCGTAAGACCATATCTGGGACATGGCATCGGCATTGAGATAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-AGA
63540679 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-GTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAG--A
* * * *
63540725 G-TCAGTGTAAGACATATCTAGGACATGCATCGG-CTAAGAGAT-GC
1 GCT-AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATAGA
*
63540769 G-TCAGAGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
63540805 ACGGATATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
44 12 0.08
45 15 0.10
46 67 0.47
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGA
Found at i:63544780 original size:21 final size:20
Alignment explanation
Indices: 63544756--63544795 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
63544746 GTGATAACGA
63544756 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTG-TGCCCTT
* *
63544777 CCACATGGGCGTGTGCCCT
1 CCACACGAGCGTGTGCCCT
63544796 ATTTCAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (20 bp):
CCACACGAGCGTGTGCCCTT
Found at i:63552409 original size:27 final size:27
Alignment explanation
Indices: 63552375--63552552 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63552365 TAAATTGTAC
63552375 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63552402 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63552428 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63552456 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63552484 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63552511 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63552538 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63552553 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63552489 original size:82 final size:81
Alignment explanation
Indices: 63552376--63552531 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63552366 AAATTGTACA
* *
63552376 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63552440 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63552457 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63552522 TGCGAGTTGA
65 TGCGAATTGA
63552532 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63552543 original size:82 final size:81
Alignment explanation
Indices: 63552372--63552552 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63552362 GTTTAAATTG
* *
63552372 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63552437 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63552453 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63552517 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63552535 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63552553 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63560595 original size:27 final size:27
Alignment explanation
Indices: 63560564--63560741 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63560554 TAAATTGTAC
63560564 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63560591 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63560617 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63560645 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63560673 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63560700 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63560727 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63560742 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63560678 original size:82 final size:81
Alignment explanation
Indices: 63560565--63560720 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63560555 AAATTGTACA
* *
63560565 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63560629 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63560646 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63560711 TGCGAGTTGA
65 TGCGAATTGA
63560721 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63560732 original size:82 final size:81
Alignment explanation
Indices: 63560561--63560741 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63560551 GATTAAATTG
* *
63560561 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63560626 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63560642 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63560706 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63560724 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63560742 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63563435 original size:45 final size:45
Alignment explanation
Indices: 63563375--63563467 Score: 123
Period size: 45 Copynumber: 2.1 Consensus size: 45
63563365 ATCTTTAATG
* * *
63563375 TGTCATAAGTTTATTAATTGTGTCCTATTTAGTACAGTATTTTAA
1 TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
* * * *
63563420 TGTCTTAAGTCTATTAATTTTGTCTTACTTAGTATAGCATTTTAA
1 TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
63563465 TGT
1 TGT
63563468 GTCTTTGTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51
Consensus pattern (45 bp):
TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
Found at i:63566180 original size:43 final size:42
Alignment explanation
Indices: 63566045--63566193 Score: 135
Period size: 44 Copynumber: 3.5 Consensus size: 42
63566035 TGTGATTTCG
** * * * *
63566045 TGTAAGACCAAGTCTGGGACGTTGGCATCG-ATTTGAGTTTTA
1 TGTAAGACCCTGTCTGGGACATCGGCATCGTATTTGA-TATCA
*
63566087 TGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATATCA
1 --TGTAAGACCCTGTCTGGGACATCGGCATCGTATTTGATATCA
*
63566131 TGTAAGACCCTGTCTGGGATAGT-GGCATCGATATTTGAT-TACA
1 TGTAAGACCCTGTCTGGGACA-TCGGCATCG-TATTTGATAT-CA
63566174 TGTAAGACCAC-GTCTGGGAC
1 TGTAAGACC-CTGTCTGGGAC
63566194 GTTGGCATTC
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
42 27 0.29
43 28 0.30
44 31 0.34
45 6 0.07
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACATCGGCATCGTATTTGATATCA
Found at i:63566200 original size:43 final size:42
Alignment explanation
Indices: 63566045--63566201 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
63566035 TGTGATTTCG
* **
63566045 TGTAAGACCAAGTCTGGGACGTTGGCATCG-ATTTGAGTTTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGA---TTACA
* * *
63566089 TGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA-TATCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTA-CA
*
63566131 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGATTACA
63566174 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
63566202 TCTATGAGCT
Statistics
Matches: 95, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 25 0.26
43 32 0.34
44 30 0.32
45 6 0.06
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
Found at i:63566960 original size:20 final size:22
Alignment explanation
Indices: 63566921--63566961 Score: 59
Period size: 20 Copynumber: 1.9 Consensus size: 22
63566911 TATATGTTTG
63566921 GTATGATTTTGGCTTATGAATGA
1 GTATGATTTTGGC-TATGAATGA
63566944 GTATGA-TTTGG-TATGAAT
1 GTATGATTTTGGCTATGAAT
63566962 TTAGAGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (22 bp):
GTATGATTTTGGCTATGAATGA
Found at i:63570316 original size:47 final size:47
Alignment explanation
Indices: 63570265--63570630 Score: 563
Period size: 47 Copynumber: 7.7 Consensus size: 47
63570255 TTAGGATTCT
* * *
63570265 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
63570312 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
63570359 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
63570406 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
63570453 ATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
63570502 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
63570549 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
63570596 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
63570631 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 251 0.85
49 45 0.15
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:63570503 original size:190 final size:190
Alignment explanation
Indices: 63570286--63570630 Score: 573
Period size: 190 Copynumber: 1.8 Consensus size: 190
63570276 GTGAACATGC
63570286 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * *
63570351 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAA
66 AATGACCGATGTGATGAATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATGAA
*
63570416 TGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 TGTGAAAGTGTATAAATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
63570476 ATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * *
63570541 AATGACCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGACCGATGTGATGAATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATGAA
*
63570606 TGTGAAAGTGTATAAATGTGATAAG
131 TGTGAAAGTGTATAAATGTAATAAG
63570631 TCCCGAAGGG
Statistics
Matches: 142, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
190 142 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGACCGATGTGATGAATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATGAA
TGTGAAAGTGTATAAATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:63571385 original size:40 final size:40
Alignment explanation
Indices: 63571323--63571699 Score: 538
Period size: 40 Copynumber: 9.3 Consensus size: 40
63571313 GAGTTATATA
*
63571323 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * *
63571363 TATCTGGGCTAAGTTCCAAAGAGCAGTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
63571403 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
63571443 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * *
63571483 TATCTGGGCTAAGTCCCGAAGAGCATAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCG-A-AG---AGCATTCGTGCTAGTGATG
* * *
63571528 TATCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
63571568 TATACGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
63571608 TATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * *
63571648 TATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
63571688 TATCCGGGCTAA
1 TATCCGGGCTAA
63571700 ACCTCGAAGG
Statistics
Matches: 306, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
40 268 0.88
41 1 0.00
42 2 0.01
43 2 0.01
44 1 0.00
45 32 0.10
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:63571675 original size:205 final size:205
Alignment explanation
Indices: 63571323--63571699 Score: 621
Period size: 205 Copynumber: 1.8 Consensus size: 205
63571313 GAGTTATATA
* *
63571323 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTAAGTTCCAAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGTATCTGGGCTAAGTTCCAAAGAGCA
* * *
63571388 GTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCT
66 GTCGTGCTAGTAATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGCT
* * *
63571453 AAGTCCCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAAGTCCCGAAGAGCATAGCATTCGT
131 AAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATAGCATTCGT
63571518 GCTAGTAATG
196 GCTAGTAATG
** *
63571528 TATCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTAATGTATAC-GGGCTAAGTTCCGAAGAGC
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGTAT-CTGGGCTAAGTTCCAAAGAGC
*
63571592 ATTCGTGCTAGTAATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGC
65 AGTCGTGCTAGTAATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGC
*
63571657 TAAGTTCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAA
130 TAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAA
63571700 ACCTCGAAGG
Statistics
Matches: 158, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
205 157 0.99
206 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (205 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGTATCTGGGCTAAGTTCCAAAGAGCA
GTCGTGCTAGTAATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGCT
AAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATAGCATTCGT
GCTAGTAATG
Found at i:63571817 original size:57 final size:57
Alignment explanation
Indices: 63571727--63571894 Score: 237
Period size: 57 Copynumber: 2.9 Consensus size: 57
63571717 GCTGGAGTTA
* * * * *
63571727 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTGTGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
**
63571784 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
* * * *
63571841 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT
63571895 CAGTGGGCAC
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 98 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
Found at i:63571858 original size:29 final size:29
Alignment explanation
Indices: 63571759--63571860 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
63571749 CTTCAACCGA
* * * *
63571759 GCACTGTGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** *
63571788 GCACTATGTGTGCAAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
63571816 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
63571845 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
63571861 TTCTTTAATC
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:63571869 original size:29 final size:28
Alignment explanation
Indices: 63571731--63571887 Score: 127
Period size: 28 Copynumber: 5.5 Consensus size: 28
63571721 GAGTTATGAG
* * * *
63571731 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
* * * ** * *
63571759 GCACTGTGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
* *
63571787 GGCACTATGTGTGCAAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
** *
63571816 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATCGA
63571844 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
*
63571873 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
63571888 AATCAGTCAG
Statistics
Matches: 100, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
28 56 0.56
29 44 0.44
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:63586108 original size:43 final size:43
Alignment explanation
Indices: 63586054--63586182 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
63586044 GCTGGTGAAT
* * * * *
63586054 AATATTATCGGGCTTTGGGCCTAGCGGGCTATAATGTCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
*
63586097 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
* *** * *
63586140 AATGATATCGGGCTTCAACCCTAGCAGGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
63586182 A
1 A
63586183 TGAGTTCAGA
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 11 0.15
43 62 0.85
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
Found at i:63586263 original size:40 final size:41
Alignment explanation
Indices: 63586116--63586262 Score: 136
Period size: 40 Copynumber: 3.6 Consensus size: 41
63586106 GGGCTTCGGG
* * *
63586116 CCTAGCAGGCTATAATGCCGATGAAATG-ATATCGGGCTTCAAC
1 CCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAAA
* * * * *
63586159 CCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAAA
* *** *
63586200 TCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAAA
63586240 CCTAGCAGGCTAAATGCCGGTGA
1 CCTAGCAGGCTAAATGCCGGTGA
63586263 TTTGATAAAA
Statistics
Matches: 81, Mismatches: 21, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
40 31 0.38
41 29 0.36
42 10 0.12
43 11 0.14
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAAA
Found at i:63590843 original size:46 final size:46
Alignment explanation
Indices: 63590743--63590905 Score: 199
Period size: 46 Copynumber: 3.5 Consensus size: 46
63590733 ATTGTGAGCT
* * *
63590743 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGAGATGA-AGCC
63590791 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATG-AAGCC
* * *
63590837 AATGTAAGA-CATGTTTGGGACATGCATCGG-CTACGAGATG-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-TGAGATGAAGCC
*
63590881 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
63590906 GCATTGGCAT
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
44 12 0.12
45 15 0.15
46 52 0.50
47 15 0.15
48 9 0.09
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGAAGCC
Found at i:63593318 original size:10 final size:10
Alignment explanation
Indices: 63593303--63593336 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
63593293 AATTTTAGAT
63593303 TTAAAAAAAA
1 TTAAAAAAAA
63593313 TTAAAAAAAA
1 TTAAAAAAAA
*
63593323 -TAAAAATAA
1 TTAAAAAAAA
63593332 TTAAA
1 TTAAA
63593337 TTTTAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
TTAAAAAAAA
Found at i:63593927 original size:21 final size:21
Alignment explanation
Indices: 63593901--63593943 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
63593891 TGACTTAATA
63593901 TATTTATAGGATACAGTTCAT
1 TATTTATAGGATACAGTTCAT
63593922 TATTTATAGGATACAGTTCAT
1 TATTTATAGGATACAGTTCAT
63593943 T
1 T
63593944 GGTAAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (21 bp):
TATTTATAGGATACAGTTCAT
Found at i:63594263 original size:31 final size:30
Alignment explanation
Indices: 63594221--63594305 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 30
63594211 GATTAAATCA
*
63594221 AAATTAAAGTTTAAAGTATACATTTGAACC
1 AAATTAAAGTTTAAAGTATACAATTGAACC
* * * * * *
63594251 ACAATTAGAGTTTCACGTGTATAATTGCACC
1 A-AATTAAAGTTTAAAGTATACAATTGAACC
63594282 AAATTAAAGTTTAAA-TATACAATT
1 AAATTAAAGTTTAAAGTATACAATT
63594306 ATACATTAAA
Statistics
Matches: 42, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
29 7 0.17
30 12 0.29
31 23 0.55
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.34
Consensus pattern (30 bp):
AAATTAAAGTTTAAAGTATACAATTGAACC
Found at i:63594521 original size:23 final size:23
Alignment explanation
Indices: 63594489--63594533 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
63594479 ACAAATATAA
63594489 TTTTACACTAGTATAAGTATATT
1 TTTTACACTAGTATAAGTATATT
*
63594512 TTTTATACTAGTATAAGTATAT
1 TTTTACACTAGTATAAGTATAT
63594534 CTTTATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.49
Consensus pattern (23 bp):
TTTTACACTAGTATAAGTATATT
Found at i:63595341 original size:31 final size:32
Alignment explanation
Indices: 63595295--63595356 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
63595285 TTATTTACAG
*
63595295 TGCATTATTTTTTAACATTCAGATAGGTTCAA
1 TGCATTATTTTTTAACATTAAGATAGGTTCAA
* *
63595327 TGCATTA-TTTTTAACGTTAAGATCGGTTCA
1 TGCATTATTTTTTAACATTAAGATAGGTTCA
63595357 GAAAATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (32 bp):
TGCATTATTTTTTAACATTAAGATAGGTTCAA
Found at i:63598166 original size:39 final size:39
Alignment explanation
Indices: 63597951--63598173 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 39
63597941 TTGAATGCTG
* * * * *
63597951 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
63597991 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
63598030 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
63598071 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* *
63598111 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGCTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
63598150 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63598174 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 38 0.24
40 104 0.67
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:63598193 original size:79 final size:80
Alignment explanation
Indices: 63598031--63598208 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
63598021 AGATACAAAT
* * * *
63598031 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
63598096 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
63598111 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGCTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
63598175 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
63598190 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
63598209 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:63600409 original size:28 final size:28
Alignment explanation
Indices: 63600348--63600402 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
63600338 GTCCCTGGCC
*
63600348 CGTGTC-CGTCACATGGCCTAAACACGCT
1 CGTGTCTC-TCACACGGCCTAAACACGCT
*
63600376 CGTGTCTCTCACACGGCCTAGACACGC
1 CGTGTCTCTCACACGGCCTAAACACGC
63600403 CTGTGTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.20, C:0.38, G:0.22, T:0.20
Consensus pattern (28 bp):
CGTGTCTCTCACACGGCCTAAACACGCT
Found at i:63619056 original size:45 final size:45
Alignment explanation
Indices: 63618942--63619057 Score: 153
Period size: 45 Copynumber: 2.6 Consensus size: 45
63618932 AATGAAACCG
* * *
63618942 GACCAACTCAATGAGCTCGGA-TGCTTCACATATATCACGAACTTG
1 GACCAACTCAACGAGCTCGGATTTC-TCACATATATCACGAACTTA
* * **
63618987 GACCAACTCAACAAGTTCAAATTTCTCACATATATCACGAACTTA
1 GACCAACTCAACGAGCTCGGATTTCTCACATATATCACGAACTTA
63619032 GACCAACTCAACGAGCTCGGATTTCT
1 GACCAACTCAACGAGCTCGGATTTCT
63619058 AAATTCCTAG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 57 0.97
46 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.25
Consensus pattern (45 bp):
GACCAACTCAACGAGCTCGGATTTCTCACATATATCACGAACTTA
Found at i:63621782 original size:42 final size:41
Alignment explanation
Indices: 63621733--63621841 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 41
63621723 TTGATGCCTC
*
63621733 TGTCCCAGACA-GAGTCTTACACGAAA-TCAGATACGATG-TTG
1 TGTCCCAGACACG-GTCTTACACGAAACTCA-AT-CGAGGCTTG
* *
63621774 ATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCTTG
1 -TGTCCCAGACACGGTCTTACACG-AAA-CTCAATCGAGGCTTG
63621818 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
63621842 TATCTGAGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
42 21 0.36
43 29 0.50
44 5 0.09
45 3 0.05
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (41 bp):
TGTCCCAGACACGGTCTTACACGAAACTCAATCGAGGCTTG
Found at i:63635798 original size:21 final size:21
Alignment explanation
Indices: 63635774--63635844 Score: 124
Period size: 21 Copynumber: 3.4 Consensus size: 21
63635764 TCCAGCACAA
63635774 GCGTGTCCTAGGGTCACACGG
1 GCGTGTCCTAGGGTCACACGG
* *
63635795 GCGTGTCCTAAGGTCACATGG
1 GCGTGTCCTAGGGTCACACGG
63635816 GCGTGTCCTAGGGTCACACGG
1 GCGTGTCCTAGGGTCACACGG
63635837 GCGTGTCC
1 GCGTGTCC
63635845 CTTGGACCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (21 bp):
GCGTGTCCTAGGGTCACACGG
Found at i:63636410 original size:21 final size:21
Alignment explanation
Indices: 63636384--63636424 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
63636374 TTCATGAATC
63636384 ATTAATGAGTTCTCTAACTCT
1 ATTAATGAGTTCTCTAACTCT
63636405 ATTAATGAGTTCTCTAACTC
1 ATTAATGAGTTCTCTAACTC
63636425 ATCAATGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (21 bp):
ATTAATGAGTTCTCTAACTCT
Found at i:63644955 original size:47 final size:47
Alignment explanation
Indices: 63644807--63645135 Score: 532
Period size: 47 Copynumber: 6.9 Consensus size: 47
63644797 NNNNNNNNNN
*
63644807 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTT
1 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
63644856 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTT
1 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
63644905 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
63644952 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
63644999 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
63645046 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCG
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * *
63645093 AGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
63645136 TCCCGAAGGG
Statistics
Matches: 269, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 192 0.71
49 77 0.29
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
Found at i:63645310 original size:37 final size:37
Alignment explanation
Indices: 63645254--63645332 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63645244 CCGAGCTCTA
* * *
63645254 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
63645291 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63645328 AAGAC
1 AAGAC
63645333 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63650577 original size:39 final size:39
Alignment explanation
Indices: 63650534--63650659 Score: 144
Period size: 39 Copynumber: 3.2 Consensus size: 39
63650524 TTAGGCCTGA
* * *
63650534 ATATATTTCCCGCACGTAGCCTGTGGACCTTAAGTCCGG
1 ATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
* * *
63650573 ATATATTTCCTGCACGTAGCCTGCGAACCTCAAGTCCGA
1 ATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
* * * * *
63650612 ATATGTTTCCAGCAGGGAGCCTGCAGACCTCAAGTCTGG
1 ATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
*
63650651 ATATGTTTC
1 ATATATTTC
63650660 TAAATATCAT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (39 bp):
ATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
Found at i:63652366 original size:41 final size:41
Alignment explanation
Indices: 63652309--63652390 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
63652299 TTTGTGGTCC
*
63652309 CGAAACCACTTTCCGACTAAGGTCAAATTAGGGCTGTCACA
1 CGAAACCACTTTCCGACTAAAGTCAAATTAGGGCTGTCACA
63652350 CGAAACCACTTTCCGACTAAAGTCAAATTAGGGCTGTCACA
1 CGAAACCACTTTCCGACTAAAGTCAAATTAGGGCTGTCACA
63652391 ACTCTCCCCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (41 bp):
CGAAACCACTTTCCGACTAAAGTCAAATTAGGGCTGTCACA
Found at i:63662986 original size:39 final size:39
Alignment explanation
Indices: 63662936--63663065 Score: 197
Period size: 39 Copynumber: 3.3 Consensus size: 39
63662926 GTCTTTAGGC
63662936 CCGGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGT
**
63662975 CCGGATATATTTCTTGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGT
* * *
63663014 CCGGATATGTTTCCAGCACGTAGCCTACGAACCTCAAGT
1 CCGGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGT
* *
63663053 CTGGATATGTTTC
1 CCGGATATATTTC
63663066 TAAATATCAT
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGT
Found at i:63688982 original size:18 final size:18
Alignment explanation
Indices: 63688959--63688995 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
63688949 ACTGAAGAGA
63688959 AGGTGAAGATAATTCGTG
1 AGGTGAAGATAATTCGTG
63688977 AGGTGAAGATAATTCGTG
1 AGGTGAAGATAATTCGTG
63688995 A
1 A
63688996 TTGTCTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27
Consensus pattern (18 bp):
AGGTGAAGATAATTCGTG
Found at i:63689604 original size:11 final size:11
Alignment explanation
Indices: 63689588--63689614 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
63689578 CAAAATAGAA
63689588 ATGATTATTTG
1 ATGATTATTTG
63689599 ATGATTATTTG
1 ATGATTATTTG
63689610 ATGAT
1 ATGAT
63689615 CCATGATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (11 bp):
ATGATTATTTG
Found at i:63690855 original size:21 final size:21
Alignment explanation
Indices: 63690831--63690898 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
63690821 TGATCTGAAC
*
63690831 TCATTGAGTTGTTGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
63690852 TCA-TGA-TATGTGGCATCTGAAG-
1 TCATTGAGT-TGTGG--TCTG-AGT
*
63690874 TCATTGAGTTATGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
63690895 TCAT
1 TCAT
63690899 GATGCATGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
19 1 0.03
20 9 0.24
21 11 0.29
22 7 0.18
23 9 0.24
24 1 0.03
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.41
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:63702869 original size:27 final size:26
Alignment explanation
Indices: 63702821--63702880 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
63702811 GTGAGGCCGC
*
63702821 CAGATATTGTAACGAAGTCACCAGATA
1 CAGATATTGTAACGAAGGCACCAGA-A
* * *
63702848 CAGATATTGTAGCTAGGGCACCAGAA
1 CAGATATTGTAACGAAGGCACCAGAA
63702874 CAGATAT
1 CAGATAT
63702881 ATATATATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTAACGAAGGCACCAGAA
Found at i:63702976 original size:66 final size:66
Alignment explanation
Indices: 63702895--63703054 Score: 320
Period size: 66 Copynumber: 2.4 Consensus size: 66
63702885 ATATGGCGGA
63702895 GCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGTATATGTGGCAA
1 GCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGTATATGTGGCAA
63702960 G
66 G
63702961 GCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGTATATGTGGCAA
1 GCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGTATATGTGGCAA
63703026 G
66 G
63703027 GCCACCAGATTGCAGCGAGGCTGCCAGA
1 GCCACCAGATTGCAGCGAGGCTGCCAGA
63703055 ACGCTTCCTC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 94 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.17
Consensus pattern (66 bp):
GCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGTATATGTGGCAA
G
Found at i:63706561 original size:14 final size:13
Alignment explanation
Indices: 63706541--63706572 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
63706531 AATATTTGAC
63706541 TTGTTCTTAATTA
1 TTGTTCTTAATTA
63706554 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
63706568 TTGTT
1 TTGTT
63706573 TTGATATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:63721572 original size:27 final size:27
Alignment explanation
Indices: 63721542--63721687 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
63721532 GGGGCAAAAT
* * *
63721542 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63721569 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63721596 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63721623 GGTAATTCTACCCTATAGGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63721650 GATAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63721677 AGTAATTCTAC
1 GGTAATTCTAC
63721688 AACTTATCCA
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:63725591 original size:45 final size:46
Alignment explanation
Indices: 63725540--63725627 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 46
63725530 CTCTAATAAT
* *
63725540 AACTCTTCGGAGTTACCTGTTAAGCTC-AATAAGCTTCCTATTCTA
1 AACTCTTAGGAGTTACCTGTTAAGCCCGAATAAGCTTCCTATTCTA
* * * *
63725585 AACTCTTATGAGTTTCCTGTTTAGCCCGGATAAGCTTCCTATT
1 AACTCTTAGGAGTTACCTGTTAAGCCCGAATAAGCTTCCTATT
63725628 ACATGGCTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 22 0.61
46 14 0.39
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
AACTCTTAGGAGTTACCTGTTAAGCCCGAATAAGCTTCCTATTCTA
Found at i:63726674 original size:15 final size:17
Alignment explanation
Indices: 63726656--63726687 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
63726646 TAGCTTAATT
63726656 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
63726671 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
63726688 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:63732196 original size:11 final size:11
Alignment explanation
Indices: 63732180--63732211 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
63732170 TTGAACATGA
63732180 TTTTTTTCAAT
1 TTTTTTTCAAT
*
63732191 TTTTTTTGAAT
1 TTTTTTTCAAT
63732202 TTTTTTTCAA
1 TTTTTTTCAA
63732212 AACCCACCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.72
Consensus pattern (11 bp):
TTTTTTTCAAT
Found at i:63735653 original size:19 final size:17
Alignment explanation
Indices: 63735626--63735677 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 17
63735616 ACTTGCACTC
63735626 TTTTTCTTTTTCAATCT
1 TTTTTCTTTTTCAATCT
*
63735643 CGTTTTGCTTTTTCTCAATCT
1 --TTTTTC-TTTT-TCAATCT
63735664 TTTTTCTTTTTCAA
1 TTTTTCTTTTTCAA
63735678 ATTCTTTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 4 0.14
18 4 0.14
19 10 0.34
20 4 0.14
21 7 0.24
ACGTcount: A:0.12, C:0.19, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTTTCTTTTTCAATCT
Found at i:63735683 original size:19 final size:18
Alignment explanation
Indices: 63735626--63735684 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
63735616 ACTTGCACTC
*
63735626 TTTTTCTTTTTCAATCTCG
1 TTTTTCTTTTTCAAT-TCT
*
63735645 TTTTGCTTTTTCTCAA-TCT
1 TTTTTC-TTTT-TCAATTCT
63735664 TTTTTCTTTTTCAAATTCT
1 TTTTTCTTTTTC-AATTCT
63735683 TT
1 TT
63735685 CTCACATTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
17 2 0.06
18 6 0.18
19 17 0.52
20 4 0.12
21 4 0.12
ACGTcount: A:0.12, C:0.19, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTTCTTTTTCAATTCT
Found at i:63739591 original size:42 final size:42
Alignment explanation
Indices: 63739440--63739593 Score: 150
Period size: 42 Copynumber: 3.6 Consensus size: 42
63739430 TACCATACCA
* **
63739440 ATGCCATATCCCAGATATGGTCTTACATG-GGATCTTGTATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAG-TCTCATATTG
* * * * *
63739482 ATGCCAATAGCCCAGCTATAGCCTTACATGACA-TCTCACATTG
1 ATGCC-ATATCCCAGATATGGTCTTACATGA-AGTCTCATATTG
* ** *
63739525 ATGCCATACCCCAGATATCATCTTATATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATTG
*
63739567 ATGCCATATCTCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
63739594 CATAGTCTTC
Statistics
Matches: 88, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
41 1 0.01
42 55 0.62
43 32 0.36
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATTG
Found at i:63740984 original size:41 final size:42
Alignment explanation
Indices: 63740846--63741008 Score: 233
Period size: 42 Copynumber: 3.9 Consensus size: 42
63740836 TAACAGTGAT
*
63740846 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATA
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
* *
63740888 ATATCAGGCTTATTGCCTAGAAGGCTTTGATGCTGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
*
63740930 ATATCAGGCTTATTGCCTAGTAGGCTTT-ATGCCGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
* * *
63740972 A-ATCAGGTTTATTACCTAGCAGGCTTTG-TGTCGGTGT
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGT
63741009 TTTATACAAG
Statistics
Matches: 110, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
41 41 0.37
42 69 0.63
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (42 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
Found at i:63740990 original size:83 final size:84
Alignment explanation
Indices: 63740846--63740999 Score: 240
Period size: 83 Copynumber: 1.8 Consensus size: 84
63740836 TAACAGTGAT
*
63740846 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATAATATCAGGCTTATTGCCTAGAAG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATAATATCAGGCTTATTACCTAGAAG
63740911 GCTTTGATGCTGGTGTATG
66 GCTTTGATGCTGGTGTATG
* * * *
63740930 ATATCAGGCTTATTGCCTAGTAGGCTTT-ATGCCGGTGTATTGA-ATCAGGTTTATTACCTAGCA
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TAATATCAGGCTTATTACCTAGAA
63740993 GGCTTTG
65 GGCTTTG
63741000 TGTCGGTGTT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
83 35 0.55
84 29 0.45
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (84 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATAATATCAGGCTTATTACCTAGAAG
GCTTTGATGCTGGTGTATG
Found at i:63742212 original size:21 final size:21
Alignment explanation
Indices: 63742188--63742243 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
63742178 TTATTCTCTT
*
63742188 GTATGTTTATGTTATAAGTAA
1 GTATGTATATGTTATAAGTAA
* *
63742209 GTATTGTATAT-TTAAAATTAA
1 GTA-TGTATATGTTATAAGTAA
63742230 GTAT-TATATGTTAT
1 GTATGTATATGTTAT
63742244 TAAGGTTTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 5 0.17
20 4 0.14
21 14 0.48
22 6 0.21
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (21 bp):
GTATGTATATGTTATAAGTAA
Found at i:63746972 original size:32 final size:32
Alignment explanation
Indices: 63746936--63747000 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
63746926 AAAGTTTGAC
63746936 AGTAGCACTAGATCATCAGAAATCGTATGCAG
1 AGTAGCACTAGATCATCAGAAATCGTATGCAG
63746968 AGTAGCACTAGATCATCAGAAATCGTATGCAG
1 AGTAGCACTAGATCATCAGAAATCGTATGCAG
63747000 A
1 A
63747001 CTTAAAACGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (32 bp):
AGTAGCACTAGATCATCAGAAATCGTATGCAG
Found at i:63748735 original size:41 final size:42
Alignment explanation
Indices: 63748678--63748827 Score: 191
Period size: 41 Copynumber: 3.6 Consensus size: 42
63748668 TAACAGTGAT
*
63748678 ATATCAGGCTTGTTGCCTAGCAGGCTTTGATGCCGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
* *
63748720 ATATC-GGCTTATTGCCTAGC-GAGCTATGATGCTGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAG-GCTTTGATGCCGGTGTATG
* *
63748761 ATATCAGGCTTATTTCCTAGTAGGCTTT-ATGCCGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
* *
63748803 A-ATCAGGTTTATTACCTAGCAGGCT
1 ATATCAGGCTTATTGCCTAGCAGGCT
63748828 CTGTGCCACT
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
40 1 0.01
41 67 0.71
42 25 0.27
43 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (42 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
Found at i:63749849 original size:12 final size:12
Alignment explanation
Indices: 63749832--63749857 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63749822 TTGTGTATTG
63749832 ATATGTATATAT
1 ATATGTATATAT
63749844 ATATGTATATAT
1 ATATGTATATAT
63749856 AT
1 AT
63749858 TTGAATGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATATGTATATAT
Found at i:63756071 original size:42 final size:42
Alignment explanation
Indices: 63755950--63756103 Score: 159
Period size: 42 Copynumber: 3.6 Consensus size: 42
63755940 TACCATACCA
* * * *
63755950 ATGCCATATCCCAGATTTGGTCTTATATG-GGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAG-TCTCATATCG
* * * * * *
63755992 ATGCCAATAGCACAGCTATGGTCTTACACGAAATCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
63756035 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATA-CTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATC-G
* *
63756077 ATACCATATCCCAGATATGGTTTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
63756104 CATAGTCTTA
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 59 0.65
43 31 0.34
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:63768261 original size:16 final size:16
Alignment explanation
Indices: 63768240--63768279 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
63768230 GATCGGCAAA
*
63768240 AGCCGAAATGTCGAAG
1 AGCCGAAATGCCGAAG
63768256 AGCCGAAATGCCGAAG
1 AGCCGAAATGCCGAAG
63768272 AGCCGAAA
1 AGCCGAAA
63768280 GTTTGGCTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.23, G:0.30, T:0.07
Consensus pattern (16 bp):
AGCCGAAATGCCGAAG
Found at i:63768551 original size:29 final size:29
Alignment explanation
Indices: 63768498--63768667 Score: 173
Period size: 29 Copynumber: 5.9 Consensus size: 29
63768488 TGAATATAAG
* * * * *
63768498 GTGATTTGGGCCTAACGGACCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
63768527 GTGATTTGGGCCTAATGGGCTATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * *
63768556 ATAAATTGGGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
*
63768585 ATGAATTGGGCCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * *
63768614 GTGAATTGGGTCTGATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
**
63768643 AAG-ATTGGGCC-AAGTGGGCCATATG
1 GTGAATTGGGCCTAA-TGGGCCATATG
63768668 CAAGTATGTA
Statistics
Matches: 119, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
27 1 0.01
28 17 0.14
29 101 0.85
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.28
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATGAAT
Found at i:63768594 original size:87 final size:86
Alignment explanation
Indices: 63768503--63768667 Score: 208
Period size: 87 Copynumber: 1.9 Consensus size: 86
63768493 ATAAGGTGAT
* *
63768503 TTGGGCCTAACGGACCATATAAAGGTGATTTGGGCCTAATGGGCTATATGAATATAA-ATTGGGC
1 TTGGGCCTAACGGACCATATAAAGGTGAATTGGGCCTAATGGGCCATAT-AA-ATAAGATTGGGC
*
63768567 C-TGATGGGCCATATGAATATGAA
64 CAAG-TGGGCCATATGAATATGAA
* * * * * *
63768590 TTGGGCCTAATGGGCCATATGAATGTGAATTGGGTCTGATGGGCCATATAAATAAGATTGGGCCA
1 TTGGGCCTAACGGACCATATAAAGGTGAATTGGGCCTAATGGGCCATATAAATAAGATTGGGCCA
63768655 AGTGGGCCATATG
66 AGTGGGCCATATG
63768668 CAAGTATGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
85 4 0.06
86 21 0.31
87 42 0.63
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (86 bp):
TTGGGCCTAACGGACCATATAAAGGTGAATTGGGCCTAATGGGCCATATAAATAAGATTGGGCCA
AGTGGGCCATATGAATATGAA
Found at i:63773455 original size:15 final size:17
Alignment explanation
Indices: 63773437--63773469 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
63773427 AGCTTAATTT
63773437 ACCAAA-TCA-ATTCAC
1 ACCAAACTCACATTCAC
63773452 ACCAAACTCACATTCAC
1 ACCAAACTCACATTCAC
63773469 A
1 A
63773470 AGTATCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (17 bp):
ACCAAACTCACATTCAC
Found at i:63778801 original size:16 final size:16
Alignment explanation
Indices: 63778782--63778813 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63778772 AATTGTTTTA
63778782 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
63778798 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
63778814 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:63779124 original size:50 final size:50
Alignment explanation
Indices: 63779026--63779554 Score: 363
Period size: 50 Copynumber: 10.5 Consensus size: 50
63779016 CTGGTATGCA
* * *
63779026 TAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCT-AGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATCTGA-TACACG
* * *
63779076 TATTAGCCTACACTTAGTACTATACATGTGACTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATCTGATACACG
* * * * * * * * * * *
63779126 TAATAGCCTGCACTTAGTACTACACACGTG-GTCGAAGGTAA-CGGGTGCGCA
1 TAGTAGCCTACACTTAGTACTACACATGTGACT-TAA--CAATCTGATACACG
* ** * * *
63779177 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATCTGATACACG
* *
63779227 TAGTAGCC-AGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTA-CACTTAGTACTACACATGTGACTTAACAATCTGATACACG
* * * * * * * *
63779277 TAGTAGCCTATACTTAGTACTATACACGTGA-TCAA-AGTTAACAGATACGCA
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACA---ATCTGATACACG
* ** * * *
63779328 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATCTGATACACG
* * * * *
63779378 TAGTAGCCTGCACTTAGTACTACATATTTAACTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATCTGATACACG
* * * * * * * *
63779428 TAGTAGCCTACAGTTAGTACTACACACGTGA-TCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACATGTGACT-TAA--CAATCTGATACACG
* * * * * * * *
63779479 TAATAGCCTGCACTTGGTACTACACATGCGACCTATCAATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATCTGATACACG
63779529 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
63779555 CATGACTCAG
Statistics
Matches: 362, Mismatches: 99, Indels: 36
0.73 0.20 0.07
Matches are distributed among these distances:
49 9 0.02
50 250 0.69
51 99 0.27
52 3 0.01
53 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATCTGATACACG
Found at i:63779204 original size:101 final size:100
Alignment explanation
Indices: 63779069--63779555 Score: 378
Period size: 101 Copynumber: 4.8 Consensus size: 100
63779059 TATCAATCTA
* * * * * *
63779069 GTACACGTATTAGCCTACACTTAGTACTATACATGTGACTTAACCATCTGATACACGTAATAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGATACACGTAGTAGCC
*
63779134 TGCACTTAGTACTACACACGTGGTCGAAGGTAACGG
66 TGCACTTAGTACTACACACGT-GTCGAAGATAACGG
* * ** * * *
63779170 GTGCGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGATACACGTAGTAGCC
* * * * *
63779235 AGCACTTAGTACTACACACGTGACTTAACCAT--CTG
66 TGCACTTAGTACTACACACGTGTC-GAA-GATAACGG
* * ** * * * * * * *
63779270 ATACACGTAGTAGCCTATACTTAGTACTATACACGTGA-TCAA-AGTTAACAGATACGCATAGTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACA---ATCTGATACACGTAGTA
* *
63779333 GCCTGCACTTAGTACTACACA--TG-C-AACCTATCAATCTG
63 GCCTGCACTTAGTACTACACACGTGTCGAA--GAT-AA-CGG
* * * * *
63779371 GTACACGTAGTAGCCTGCACTTAGTACTACATATTTAACTTAACCATCTGATACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGATACACGTAGTAGCC
* * *
63779436 TACAGTTAGTACTACACACGTGATCGAAGTTAACGG
66 TGCACTTAGTACTACACACGTG-TCGAAGATAACGG
* * * * * * * *
63779472 GTACGCATAATAGCCTGCACTTGGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGATACACGTAGTAGCC
*
63779537 TACACTTAGTACTACACAC
66 TGCACTTAGTACTACACAC
63779556 ATGACTCAGA
Statistics
Matches: 297, Mismatches: 72, Indels: 34
0.74 0.18 0.08
Matches are distributed among these distances:
96 2 0.01
97 3 0.01
98 2 0.01
99 3 0.01
100 64 0.22
101 211 0.71
102 8 0.03
103 1 0.00
104 1 0.00
105 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (100 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGATACACGTAGTAGCC
TGCACTTAGTACTACACACGTGTCGAAGATAACGG
Found at i:63779297 original size:151 final size:151
Alignment explanation
Indices: 63779018--63779561 Score: 820
Period size: 151 Copynumber: 3.6 Consensus size: 151
63779008 GGAGCTCTCT
* * * * *
63779018 GGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTATTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
* * * *
63779083 CTACACTTAGTACTATACATGTGACTTAACCATCTGATACACGTAATAGCCTGCACTTAGTACTA
66 CTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
* *
63779148 CACACGTGGTCGAAGGTAACG
131 CACACGTGATCGAAGTTAACG
*
63779169 GGTGCGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
*
63779234 C-AGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTATACTTAGTACT
66 CTA-CACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACT
* * *
63779298 ATACACGTGATCAAAGTTAACA
130 ACACACGTGATCGAAGTTAACG
*
63779320 GATACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
* * ** * *
63779385 CTGCACTTAGTACTACATATTTAACTTAACCATCTGATACACGTAGTAGCCTACAGTTAGTACTA
66 CTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
63779450 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* * * *
63779471 GGTACGCATAATAGCCTGCACTTGGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
*
63779536 CTACACTTAGTACTACACACATGACT
66 CTACACTTAGTACTACACACGTGACT
63779562 CAGAACGAAT
Statistics
Matches: 353, Mismatches: 38, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
150 1 0.00
151 352 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
CTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACG
Found at i:63779941 original size:18 final size:20
Alignment explanation
Indices: 63779910--63779956 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
63779900 AAGAATAGGT
*
63779910 TATATCATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
63779931 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
63779950 TATATAT
1 TATATAT
63779957 ACTTACAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:63783266 original size:28 final size:28
Alignment explanation
Indices: 63783235--63783296 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
63783225 TTATATAAAA
* *
63783235 AAATAGACTTTGGCCCCAACGGCTAATT
1 AAATAGACGTTGGCCCCAACGACTAATT
* * *
63783263 AAATAGCCGTTGGTCCCAACTACTAATT
1 AAATAGACGTTGGCCCCAACGACTAATT
63783291 AAATAG
1 AAATAG
63783297 TCATTGGGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (28 bp):
AAATAGACGTTGGCCCCAACGACTAATT
Found at i:63783515 original size:12 final size:12
Alignment explanation
Indices: 63783498--63783524 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
63783488 CGTAATTTTT
63783498 TAAAAAATAGTC
1 TAAAAAATAGTC
63783510 TAAAAAATAGTC
1 TAAAAAATAGTC
63783522 TAA
1 TAA
63783525 TCTTGTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26
Consensus pattern (12 bp):
TAAAAAATAGTC
Found at i:63787783 original size:13 final size:13
Alignment explanation
Indices: 63787765--63787789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63787755 GTTTTTTTTT
63787765 TTTTTAATTAATG
1 TTTTTAATTAATG
63787778 TTTTTAATTAAT
1 TTTTTAATTAAT
63787790 AAATATATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:63791226 original size:68 final size:67
Alignment explanation
Indices: 63791154--63791303 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
63791144 CATCATGTGT
* * * *
63791154 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
63791216 ATGTAG
62 ATGTAG
** * *
63791222 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
63791287 AG
66 AG
63791289 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
63791304 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:63791259 original size:64 final size:64
Alignment explanation
Indices: 63791178--63791361 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
63791168 AGACATTATG
* *
63791178 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63791242 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63791307 AA
63 AA
* * * *
63791309 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63791362 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63793823 original size:35 final size:35
Alignment explanation
Indices: 63793784--63793890 Score: 124
Period size: 35 Copynumber: 3.1 Consensus size: 35
63793774 ACCATGGTTA
* *
63793784 ATCCATGGAAAATTATGACATGTAGGTATGGTATT
1 ATCCATGCAAAATTATGACACGTAGGTATGGTATT
** *
63793819 ATCCATGCTGAGTTATGACACGTAGGTATGGTATT
1 ATCCATGCAAAATTATGACACGTAGGTATGGTATT
* ** * *
63793854 ATCCATACTGAGTTATGATACGTAGGTATGGTATT
1 ATCCATGCAAAATTATGACACGTAGGTATGGTATT
63793889 AT
1 AT
63793891 ACATACTGAG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (35 bp):
ATCCATGCAAAATTATGACACGTAGGTATGGTATT
Found at i:63793896 original size:35 final size:35
Alignment explanation
Indices: 63793796--63793971 Score: 230
Period size: 35 Copynumber: 5.1 Consensus size: 35
63793786 CCATGGAAAA
* *
63793796 TTATGACATGTAGGTATGGTATTATCCATGCTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
63793831 TTATGACACGTAGGTATGGTATTATCCATACTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
* *
63793866 TTATGATACGTAGGTATGGTATTATACATACTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
* * * *
63793901 CTATAATACGTAGGTATGGTATT-TCCCATACCGAG
1 TTATGACACGTAGGTATGGTATTAT-CCATACTGAG
* * *
63793936 TTGTGAAACGTAGGTATGGTATTAACCATACT-AG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
63793970 TT
1 TT
63793972 GTGAATCGTG
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
34 5 0.04
35 120 0.96
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (35 bp):
TTATGACACGTAGGTATGGTATTATCCATACTGAG
Found at i:63796512 original size:24 final size:25
Alignment explanation
Indices: 63796464--63796514 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
63796454 CGTAAAAGAG
*
63796464 ATAGTATTGAATTTTGAAATATTGA
1 ATAGTATTGAATTTTAAAATATTGA
63796489 ATAGTATTGAA-TTTAAAATATTGA
1 ATAGTATTGAATTTTAAAATATTGA
63796513 AT
1 AT
63796515 TAATTTTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (25 bp):
ATAGTATTGAATTTTAAAATATTGA
Found at i:63796523 original size:25 final size:25
Alignment explanation
Indices: 63796468--63796523 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
63796458 AAAGAGATAG
* *
63796468 TATTGAATTTTGAAATATTGAATAG
1 TATTGAATTTTAAAATATTGAATAA
63796493 TATTGAA-TTTAAAATATTGAATTAA
1 TATTGAATTTTAAAATATTGAA-TAA
*
63796518 TTTTGA
1 TATTGA
63796524 TTATAGTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (25 bp):
TATTGAATTTTAAAATATTGAATAA
Found at i:63796546 original size:14 final size:14
Alignment explanation
Indices: 63796524--63796578 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
63796514 TTAATTTTGA
*
63796524 TTATAGTTTAGGAT
1 TTATGGTTTAGGAT
63796538 TTATGGTTTAGGAT
1 TTATGGTTTAGGAT
* *
63796552 ATATGGTTTAGGGT
1 TTATGGTTTAGGAT
* *
63796566 TTAAGGGTTAGGA
1 TTATGGTTTAGGA
63796579 GTTACTATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (14 bp):
TTATGGTTTAGGAT
Found at i:63796668 original size:21 final size:22
Alignment explanation
Indices: 63796644--63796697 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
63796634 TAGTTGGAGT
63796644 TTAAGGTTTAGGGGTTAG-GGG
1 TTAAGGTTTAGGGGTTAGAGGG
* * *
63796665 TTAAGGGTTAAGGGTTAGAGGT
1 TTAAGGTTTAGGGGTTAGAGGG
*
63796687 TTATGGTTTAG
1 TTAAGGTTTAG
63796698 ATCGAGTCTA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (22 bp):
TTAAGGTTTAGGGGTTAGAGGG
Found at i:63796671 original size:15 final size:14
Alignment explanation
Indices: 63796644--63796754 Score: 53
Period size: 14 Copynumber: 7.6 Consensus size: 14
63796634 TAGTTGGAGT
* *
63796644 TTAAGGTTTAGGGG
1 TTAAGGGTTAAGGG
*
63796658 TTAGGGGTTAAGGG
1 TTAAGGGTTAAGGG
*
63796672 TTAAGGGTTAGAGGT
1 TTAAGGGTTA-AGGG
* * *
63796687 TTATGGTTTAGATCGAG
1 TTAAGGGTTA-A--GGG
*
63796704 TCTAAGGGTTAGGGG
1 T-TAAGGGTTAAGGG
* *
63796719 TTAAGAGTTAA-GA
1 TTAAGGGTTAAGGG
* *
63796732 TTTAGGGTTTAGGG
1 TTAAGGGTTAAGGG
*
63796746 TTTAGGGTT
1 TTAAGGGTT
63796755 TAGAGTTTAA
Statistics
Matches: 72, Mismatches: 20, Indels: 10
0.71 0.20 0.10
Matches are distributed among these distances:
13 9 0.12
14 38 0.53
15 16 0.22
17 2 0.03
18 7 0.10
ACGTcount: A:0.23, C:0.02, G:0.39, T:0.36
Consensus pattern (14 bp):
TTAAGGGTTAAGGG
Found at i:63796742 original size:7 final size:7
Alignment explanation
Indices: 63796732--63796800 Score: 59
Period size: 7 Copynumber: 9.7 Consensus size: 7
63796722 AGAGTTAAGA
63796732 TTTAGGG
1 TTTAGGG
63796739 TTTAGGG
1 TTTAGGG
63796746 TTTAGGG
1 TTTAGGG
*
63796753 TTTAGAG
1 TTTAGGG
**
63796760 TTTAATG
1 TTTAGGG
63796767 TTTATGGG
1 TTTA-GGG
*
63796775 -ATAGGG
1 TTTAGGG
*
63796781 GTTAGAGG
1 TTTAG-GG
*
63796789 TTTAGGT
1 TTTAGGG
63796796 TTTAG
1 TTTAG
63796801 ATTAATTAGT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
6 3 0.06
7 40 0.80
8 7 0.14
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:63797266 original size:62 final size:62
Alignment explanation
Indices: 63797198--63797315 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 62
63797188 GGCCTTTTTT
* * *
63797198 GCAAAAAAAC-ATAATAGTTTATCGTAAACGACATCGTTTTAATAGGAGATTTAGGGAACGCC
1 GCAAAAAAACAAT-ATAGTATAACGAAAACGACATCGTTTTAATAGGAGATTTAGGGAACGCC
* * * * *
63797260 GCAAAAAAGCAATATAGTATAACGAAAACGGCGTTGTTTTAATTGGAGATTTAGGG
1 GCAAAAAAACAATATAGTATAACGAAAACGACATCGTTTTAATAGGAGATTTAGGG
63797316 GATTAACGGC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
62 45 0.96
63 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (62 bp):
GCAAAAAAACAATATAGTATAACGAAAACGACATCGTTTTAATAGGAGATTTAGGGAACGCC
Found at i:63797308 original size:135 final size:137
Alignment explanation
Indices: 63797119--63797396 Score: 380
Period size: 135 Copynumber: 2.0 Consensus size: 137
63797109 TTTACAAAAA
* *
63797119 AACGCCGCAAAGAAGCAAAATAGTATAACGAGAACAGCGTCATTTTAATTGGAGATTTAGGGGAT
1 AACGCCGCAAAAAAGCAAAATAGTATAACGAAAACAGCGTCATTTTAATTGGAGATTTAGGGGAT
* *
63797184 TAGCGGCCTTTTT-TGCA-AAAAAACATAATAGTTTATCGTAAACGACATCGTTTTAATAGGAGA
66 TAACGGCCTTTTTATGCACAAAAAACATAATAGTTTATCCTAAACGACATCGTTTTAATAGGAGA
63797247 TTTAGGG
131 TTTAGGG
* * **
63797254 AACGCCGCAAAAAAGCAATATAGTATAACGAAAACGGCGTTGTTTTAATTGGAGATTTAGGGGAT
1 AACGCCGCAAAAAAGCAAAATAGTATAACGAAAACAGCGTCATTTTAATTGGAGATTTAGGGGAT
* * *
63797319 TAACGGCGTTTTTAAAAAATGCAGCAAAAAACATAATAGTTTATCCTAAACGTCGTCGTTTTAAT
66 TAACGGCCTTTTT-----ATGCA-CAAAAAACATAATAGTTTATCCTAAACGACATCGTTTTAAT
*
63797384 TGGAGATTTAGGG
125 AGGAGATTTAGGG
63797397 GATTAGCGTG
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
135 70 0.57
141 4 0.03
143 49 0.40
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (137 bp):
AACGCCGCAAAAAAGCAAAATAGTATAACGAAAACAGCGTCATTTTAATTGGAGATTTAGGGGAT
TAACGGCCTTTTTATGCACAAAAAACATAATAGTTTATCCTAAACGACATCGTTTTAATAGGAGA
TTTAGGG
Found at i:63797494 original size:82 final size:81
Alignment explanation
Indices: 63797257--63797503 Score: 327
Period size: 81 Copynumber: 3.0 Consensus size: 81
63797247 TTTAGGGAAC
* * *
63797257 GCCGCAAAAAAGCAATATAGTATAACGAAAACGGCGTTGTTTTAATTGGAGATTTAGGGGATTAA
1 GCCGCAAAAAAGCAAAATAGTATAACG-AAACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAG
*
63797322 CGGCGTTTTTAAAAAAT
65 CGGCGTTTTTATAAAAT
* * * * * *
63797339 GCAGCAAAAAA-CATAATAGTTTATCCTAAACGTCGTCGTTTTAATTGGAGATTTAGGGGATTAG
1 GCCGCAAAAAAGCAAAATAGTATA-ACGAAACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAG
*
63797403 CGTG-TTTTTTATAAAAT
65 CG-GCGTTTTTATAAAAT
63797420 GCCGCAAAAAAGCAAAATAGTATAACGAGAACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAG
1 GCCGCAAAAAAGCAAAATAGTATAACGA-AACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAG
*
63797485 CGGCGTTTTTTTGAAAAT
65 CGGCGTTTTTAT-AAAAT
63797503 G
1 G
63797504 TCGTCGTTTA
Statistics
Matches: 140, Mismatches: 19, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
81 69 0.49
82 65 0.46
83 6 0.04
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.30
Consensus pattern (81 bp):
GCCGCAAAAAAGCAAAATAGTATAACGAAACGGCGTCGTTTTAATTGGAGATTTAGGGGATTAGC
GGCGTTTTTATAAAAT
Found at i:63798520 original size:35 final size:35
Alignment explanation
Indices: 63798474--63798542 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
63798464 CAGCAGACAT
63798474 GGTGAAGTCTCATTGTCGAGGTAACATACATCTGC
1 GGTGAAGTCTCATTGTCGAGGTAACATACATCTGC
*
63798509 GGTGAAGTCTCATTGTGGAGGTAACATACATCTG
1 GGTGAAGTCTCATTGTCGAGGTAACATACATCTG
63798543 ACTTGAATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (35 bp):
GGTGAAGTCTCATTGTCGAGGTAACATACATCTGC
Found at i:63801727 original size:9 final size:9
Alignment explanation
Indices: 63801715--63801980 Score: 106
Period size: 9 Copynumber: 30.1 Consensus size: 9
63801705 TATATCATAT
63801715 CATAACTTA
1 CATAACTTA
63801724 CATAACTTA
1 CATAACTTA
*
63801733 CAAAACTTA
1 CATAACTTA
63801742 CATAA--TA
1 CATAACTTA
63801749 CATAAC-TA
1 CATAACTTA
* *
63801757 TATAACTTC
1 CATAACTTA
63801766 CATAACTTA
1 CATAACTTA
*
63801775 CGTAA--TA
1 CATAACTTA
*
63801782 CATAA-ATA
1 CATAACTTA
* ** *
63801790 TATTTCATA
1 CATAACTTA
*
63801799 TCATAATTTA
1 -CATAACTTA
63801809 CATAACTTA
1 CATAACTTA
63801818 CATAACTTA
1 CATAACTTA
* *
63801827 TAAAACTTA
1 CATAACTTA
*
63801836 AATAA--TA
1 CATAACTTA
* *
63801843 AATAA-ATA
1 CATAACTTA
*
63801851 TATAACTTA
1 CATAACTTA
*
63801860 CATAGCTTA
1 CATAACTTA
*
63801869 CGTAA--TA
1 CATAACTTA
*
63801876 CATAA-ATA
1 CATAACTTA
* ** *
63801884 TATTTCATA
1 CATAACTTA
*
63801893 TCATAATTTA
1 -CATAACTTA
63801903 CATAACTTA
1 CATAACTTA
*
63801912 CATACCTTA
1 CATAACTTA
*
63801921 CATAAATTTATA
1 CAT-AA-CT-TA
* *
63801933 TCATATCATA
1 -CATAACTTA
63801943 TCATAACTTA
1 -CATAACTTA
63801953 CATAACTTA
1 CATAACTTA
* *
63801962 CAAAACATA
1 CATAACTTA
*
63801971 CTTAACTTA
1 CATAACTTA
63801980 C
1 C
63801981 GTAATACATA
Statistics
Matches: 193, Mismatches: 50, Indels: 28
0.71 0.18 0.10
Matches are distributed among these distances:
7 26 0.13
8 21 0.11
9 120 0.62
10 19 0.10
11 1 0.01
12 3 0.02
13 3 0.02
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:63801764 original size:33 final size:33
Alignment explanation
Indices: 63801715--63801886 Score: 131
Period size: 33 Copynumber: 5.3 Consensus size: 33
63801705 TATATCATAT
* *
63801715 CATAACTTACATAACTTACAAAACTTACATAATA
1 CATAAC-TATATAACTTACATAACTTACATAATA
* *
63801749 CATAACTATATAACTTCCATAACTTACGTAATA
1 CATAACTATATAACTTACATAACTTACATAATA
* * * *
63801782 CATAA--ATAT-A-TTTCATATCATA-AT-TTA
1 CATAACTATATAACTTACATAACTTACATAATA
* * * *
63801809 CATAACTTACATAACTTATAAAACTTAAATAATA
1 CATAAC-TATATAACTTACATAACTTACATAATA
* * * *
63801843 AATAAATATATAACTTACATAGCTTACGTAATA
1 CATAACTATATAACTTACATAACTTACATAATA
*
63801876 CATAAATATAT
1 CATAACTATAT
63801887 TTCATATCAT
Statistics
Matches: 106, Mismatches: 25, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
27 7 0.07
28 1 0.01
29 9 0.08
30 4 0.04
31 5 0.05
32 7 0.07
33 61 0.58
34 12 0.11
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (33 bp):
CATAACTATATAACTTACATAACTTACATAATA
Found at i:63801825 original size:52 final size:51
Alignment explanation
Indices: 63801758--63801972 Score: 200
Period size: 50 Copynumber: 4.4 Consensus size: 51
63801748 ACATAACTAT
*
63801758 ATAACTTCCATAACTTACGTAATACATAAATATATTTCATATCATAATTTAC
1 ATAACTTACATAACTTAC-TAATACATAAATATATTTCATATCATAATTTAC
* * * *
63801810 ATAACTTACATAACTTA-TAAAACTTAAATA-A--T-A-A--ATAA-ATAT
1 ATAACTTACATAACTTACTAATACATAAATATATTTCATATCATAATTTAC
*
63801852 ATAACTTACATAGCTTACGTAATACATAAATATATTTCATATCATAATTTAC
1 ATAACTTACATAACTTAC-TAATACATAAATATATTTCATATCATAATTTAC
* * ** * *
63801904 ATAACTTACATACCTTAC--ATAAATTTATATCATATCATATCATAACTTAC
1 ATAACTTACATAACTTACTAATACATAAATAT-ATTTCATATCATAATTTAC
* *
63801954 ATAACTTACAAAACATACT
1 ATAACTTACATAACTTACT
63801973 TAACTTACGT
Statistics
Matches: 132, Mismatches: 19, Indels: 25
0.75 0.11 0.14
Matches are distributed among these distances:
42 18 0.14
43 4 0.03
44 11 0.08
45 2 0.02
46 1 0.01
47 2 0.02
48 1 0.01
49 11 0.08
50 43 0.33
51 4 0.03
52 35 0.27
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.36
Consensus pattern (51 bp):
ATAACTTACATAACTTACTAATACATAAATATATTTCATATCATAATTTAC
Found at i:63801876 original size:94 final size:94
Alignment explanation
Indices: 63801715--63801962 Score: 358
Period size: 94 Copynumber: 2.6 Consensus size: 94
63801705 TATATCATAT
* * * *
63801715 CATAACTTACATAACTTACAAAACTTACATAATACATAACTATATAACTTCCATAACTTACGTAA
1 CATAACTTACATAACTTACAAAACTTAAATAATAAATAAATATATAACTTACATAACTTACGTAA
63801780 TACATAAATATATTTCATATCATAATTTA
66 TACATAAATATATTTCATATCATAATTTA
* *
63801809 CATAACTTACATAACTTATAAAACTTAAATAATAAATAAATATATAACTTACATAGCTTACGTAA
1 CATAACTTACATAACTTACAAAACTTAAATAATAAATAAATATATAACTTACATAACTTACGTAA
63801874 TACATAAATATATTTCATATCATAATTTA
66 TACATAAATATATTTCATATCATAATTTA
* * * * *
63801903 CATAACTTACATACCTTACATAAATTTATATCAT--AT-CATATCATAACTTACATAACTTAC
1 CATAACTTACATAACTTACA-AAACTTAAATAATAAATAAATAT-ATAACTTACATAACTTAC
63801963 AAAACATACT
Statistics
Matches: 139, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
92 4 0.03
93 19 0.14
94 106 0.76
95 10 0.07
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.36
Consensus pattern (94 bp):
CATAACTTACATAACTTACAAAACTTAAATAATAAATAAATATATAACTTACATAACTTACGTAA
TACATAAATATATTTCATATCATAATTTA
Found at i:63801962 original size:41 final size:44
Alignment explanation
Indices: 63801699--63801963 Score: 219
Period size: 43 Copynumber: 6.0 Consensus size: 44
63801689 ATCTTAATGT
*
63801699 TAAATATATATCATATCATAACTTACATAACTTACAAAACTTACA
1 TAAATATATATCATATCATAA-TTACATAACTTACATAACTTACA
* * * *
63801744 T-AATACATAAC-TAT-ATAACTTCCATAACTTACGTAA--TACA
1 TAAATATATATCATATCATAA-TTACATAACTTACATAACTTACA
* *
63801784 TAAATATATTTCATATCATAATTTACATAACTTACATAACTTATAAAACT
1 TAAATATATATCATATCATAA-TTACATAACTTACATAAC-T-T---ACA
* * * *
63801834 TAAATAATAAATAAATAT-ATAACTTACATAGCTTACGTAA--TACA
1 TAAAT-ATATAT-CATATCATAA-TTACATAACTTACATAACTTACA
* *
63801878 TAAATATATTTCATATCATAATTTACATAACTTACATACCTTACA
1 TAAATATATATCATATCATAA-TTACATAACTTACATAACTTACA
*
63801923 TAAATTTATATCATATCAT-A-T-CATAACTTACATAACTTACA
1 TAAATATATATCATATCATAATTACATAACTTACATAACTTACA
63801964 AAACATACTT
Statistics
Matches: 176, Mismatches: 29, Indels: 34
0.74 0.12 0.14
Matches are distributed among these distances:
40 5 0.03
41 26 0.15
42 27 0.15
43 44 0.25
44 16 0.09
45 22 0.12
47 2 0.01
50 7 0.04
51 23 0.13
52 4 0.02
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.36
Consensus pattern (44 bp):
TAAATATATATCATATCATAATTACATAACTTACATAACTTACA
Found at i:63807227 original size:21 final size:21
Alignment explanation
Indices: 63807192--63807267 Score: 107
Period size: 21 Copynumber: 3.6 Consensus size: 21
63807182 ACTTAGAGCG
*
63807192 GAGGCAGCAGAGAGGGAGGTA
1 GAGGCAGCAGCGAGGGAGGTA
* *
63807213 GCGGCAACAGCGAGGGAGGTA
1 GAGGCAGCAGCGAGGGAGGTA
*
63807234 GTGGCAGCAGCGAGGGAGGTA
1 GAGGCAGCAGCGAGGGAGGTA
*
63807255 GAGGCAGTAGCGA
1 GAGGCAGCAGCGA
63807268 TGGCAGCAGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.29, C:0.14, G:0.50, T:0.07
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGTA
Found at i:63807560 original size:31 final size:31
Alignment explanation
Indices: 63807510--63807575 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
63807500 TGTATTTTTT
* *
63807510 ATGCTACATTTGCTGTTTTTGGTTGGATTTC
1 ATGCTACATTTGCTATTTTTGGTTGGATTTA
* *
63807541 ATGCTATATTTTCTATTTTTGGTTGGATTTA
1 ATGCTACATTTGCTATTTTTGGTTGGATTTA
63807572 ATGC
1 ATGC
63807576 AGGAATGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.53
Consensus pattern (31 bp):
ATGCTACATTTGCTATTTTTGGTTGGATTTA
Found at i:63816248 original size:42 final size:41
Alignment explanation
Indices: 63816154--63816315 Score: 159
Period size: 41 Copynumber: 3.9 Consensus size: 41
63816144 GGGTCTAAAT
* * *
63816154 CCGAGCTTGGTTTCAAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGCTAATAA
*
63816195 CCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGTG-TCATAA
1 CCGAACTTAGTTTCGAAGGGC-TTTT-GAGCCAGTGCTAATAA
* * * *
63816237 CCGGACTTAGTTCCGAAGGGCCTTCGAGCCAGTAGTCTAAT--
1 CCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGT-G-CTAATAA
* * * *
63816278 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGTGCTAA
1 CCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGCTAA
63816316 GAGTCGGACT
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
39 4 0.04
40 9 0.09
41 46 0.46
42 28 0.28
43 12 0.12
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (41 bp):
CCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:63821520 original size:42 final size:42
Alignment explanation
Indices: 63821403--63821568 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 42
63821393 GGTACTGTAC
* * *
63821403 CAATGCCATATCCTAGATATGGTCTTACATGTAATCT-AGTAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCA-TAT
** * * * *
63821445 TGATGCCAATAGCCCAGCTTTGGTCTTAAACGAAATCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATAT
* * *
63821488 CAATGCCATATCCCAGATATGGTCTTATACGAAGTCTCATAC
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
* * *
63821530 CGATGCCATATCCCAGATACGGTCTTACACGTAATCTCA
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
63821569 GTAAGCCTAA
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
42 68 0.68
43 31 0.31
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
Found at i:63828961 original size:43 final size:42
Alignment explanation
Indices: 63828874--63828985 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 42
63828864 TGAGTTTACG
* * **
63828874 TGTAAGACCATATTCGGGATATGGCATCGGTATGAGATTTCA
1 TGTAAGACCATACTCGGGATATGGCATCGATATGAGATCCCA
* *
63828916 TGTAAGACCATAGCT-GGGCTATTGGCATCGATATGGGATCCCA
1 TGTAAGACCATA-CTCGGGATA-TGGCATCGATATGAGATCCCA
63828959 TGTAAGACCATA-TCCGGGATATGGCAT
1 TGTAAGACCATACT-CGGGATATGGCAT
63828986 TGGTATTGTA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 23 0.39
43 35 0.59
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATACTCGGGATATGGCATCGATATGAGATCCCA
Found at i:63831073 original size:42 final size:42
Alignment explanation
Indices: 63830968--63831119 Score: 162
Period size: 42 Copynumber: 3.5 Consensus size: 42
63830958 TCGTACAACA
* **
63830968 CCAATGTCCCAGACATGGTCTTACATGTAATCACATATTGATG
1 CCAATGTCCCAGACATGGTCTTACATGTAA-CTCATAACGATG
* * * *
63831011 CCACTGTCCCAAACAGGGTCTTACATG-AACTTATAGACGATG
1 CCAATGTCCCAGACATGGTCTTACATGTAACTCATA-ACGATG
* *
63831053 CCAATGTCCCAGACATGGTCTTACATGTAAATCAAAAATCGATG
1 CCAATGTCCCAGACATGGTCTTACATGTAACTC-ATAA-CGATG
* *
63831097 CCAACGTCCCAGACGTGGTCTTA
1 CCAATGTCCCAGACATGGTCTTA
63831120 TACAAAATCA
Statistics
Matches: 90, Mismatches: 15, Indels: 7
0.80 0.13 0.06
Matches are distributed among these distances:
41 4 0.04
42 30 0.33
43 28 0.31
44 28 0.31
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACATGTAACTCATAACGATG
Found at i:63832495 original size:22 final size:22
Alignment explanation
Indices: 63832470--63832514 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
63832460 CCCACAAGGT
63832470 ATGGATTTTGTAAAAATGAATA
1 ATGGATTTTGTAAAAATGAATA
*
63832492 ATGGATTTTGTAAGAATGAATA
1 ATGGATTTTGTAAAAATGAATA
63832514 A
1 A
63832515 GCCCTTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (22 bp):
ATGGATTTTGTAAAAATGAATA
Found at i:63847467 original size:16 final size:16
Alignment explanation
Indices: 63847442--63847484 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
63847432 GTAGATCGAC
63847442 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
*
63847458 AAAAGTCGAAATGCCG
1 AAAAGCCGAAATGCCG
*
63847474 AAAAGCTGAAA
1 AAAAGCCGAAA
63847485 GTTTGGCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.19, G:0.23, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:63847484 original size:8 final size:8
Alignment explanation
Indices: 63847442--63847484 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
63847432 GTAGATCGAC
63847442 AAAAGCCG
1 AAAAGCCG
*
63847450 AAATGCCG
1 AAAAGCCG
*
63847458 AAAAGTCG
1 AAAAGCCG
*
63847466 AAATGCCG
1 AAAAGCCG
*
63847474 AAAAGCTG
1 AAAAGCCG
63847482 AAA
1 AAA
63847485 GTTTGGCTGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.49, C:0.19, G:0.23, T:0.09
Consensus pattern (8 bp):
AAAAGCCG
Found at i:63847726 original size:28 final size:29
Alignment explanation
Indices: 63847695--63847755 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
63847685 GTGAGCATGA
63847695 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
*
63847723 ATATAAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
63847752 ATAT
1 ATAT
63847756 GAATATGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACGGGCC
Found at i:63847771 original size:29 final size:29
Alignment explanation
Indices: 63847710--63847786 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
63847700 AGGTGATTTG
* * * *
63847710 GGCCTAACGGGCCATATAAAGGTGATTTG
1 GGCCTAATGGGCCATATAAAGATGAATTA
* *
63847739 GGCCTAATGGGCCATATGAATATGAATTA
1 GGCCTAATGGGCCATATAAAGATGAATTA
*
63847768 GGCCTGATGGGCCATATAA
1 GGCCTAATGGGCCATATAA
63847787 TGAGATTGGG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAAGATGAATTA
Found at i:63849188 original size:27 final size:27
Alignment explanation
Indices: 63849158--63849335 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63849148 ATATTGAGTC
* * * *
63849158 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63849185 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63849212 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63849240 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63849267 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63849294 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63849321 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63849336 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63849297 original size:82 final size:81
Alignment explanation
Indices: 63849179--63849334 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63849169 TGCTATATAA
* *
63849179 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63849244 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63849261 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63849325 CACTTAGTGC
65 CACTTAGTGC
63849335 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63857252 original size:27 final size:27
Alignment explanation
Indices: 63857222--63857453 Score: 304
Period size: 27 Copynumber: 8.6 Consensus size: 27
63857212 ATATTGAGTC
* * *
63857222 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
63857249 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
63857276 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
63857303 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
63857330 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
63857358 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
63857385 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
63857412 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
63857439 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63857454 GTACAATTTA
Statistics
Matches: 183, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
27 158 0.86
28 25 0.14
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:63857388 original size:109 final size:108
Alignment explanation
Indices: 63857222--63857453 Score: 313
Period size: 109 Copynumber: 2.1 Consensus size: 108
63857212 ATATTGAGTC
* * * *
63857222 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAG
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAG
* *
63857287 TGC-TACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
66 TGCAT-CATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
* * ** *
63857330 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTA
* **
63857395 GTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
65 GTGCATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
63857439 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63857454 GTACAATTTA
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
108 20 0.19
109 87 0.81
110 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (108 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAG
TGCATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:63863926 original size:42 final size:43
Alignment explanation
Indices: 63863866--63863947 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
63863856 CTGAGTTTAC
* *
63863866 GTGTAAGACCATATCTGGGATA-TGGCATCGGTATGAGATTTT
1 GTGTAAGACCATAGCTGGGATATTGGCATCGATATGAGATTTT
* *
63863908 GTGTAAGACCATAGCTGGGCTATTGGCATCTATATGAGAT
1 GTGTAAGACCATAGCTGGGATATTGGCATCGATATGAGAT
63863948 CCCATGTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 20 0.57
43 15 0.43
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGATATTGGCATCGATATGAGATTTT
Found at i:63863956 original size:43 final size:42
Alignment explanation
Indices: 63863867--63863985 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
63863857 TGAGTTTACG
* * ****
63863867 TGTAAGACCATATCTGGGATATGGCATCGGTATGAGATTTTG
1 TGTAAGACCATAGCTGGGATATGGCATCGATATGAGATCCCA
* *
63863909 TGTAAGACCATAGCTGGGCTATTGGCATCTATATGAGATCCCA
1 TGTAAGACCATAGCTGGGATA-TGGCATCGATATGAGATCCCA
* * * *
63863952 TGTAAAACCATATCCGGGATATGGCATTGATATG
1 TGTAAGACCATAGCTGGGATATGGCATCGATATG
63863986 GTACTATGTG
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGGATATGGCATCGATATGAGATCCCA
Found at i:63866953 original size:46 final size:46
Alignment explanation
Indices: 63866881--63866971 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
63866871 GGAAGTGTAT
* * *
63866881 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
63866927 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
63866972 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:63880784 original size:51 final size:50
Alignment explanation
Indices: 63880656--63880793 Score: 161
Period size: 51 Copynumber: 2.7 Consensus size: 50
63880646 GATTATTTGG
* * *
63880656 AAAGCCTTTGTAGTGTATTGTTAGGAAAGCCTTTGTGGCTAATCTTATGA
1 AAAGCCTTTGTGGCGTATTGTTAGGAAAGCCTTTGTGACTAATCTTATGA
* * * * *
63880706 AAAGTCTTTATGGCATATT-TTCAGGAAAGCCCTTTGTTACTAATCTTGTGA
1 AAAGCCTTTGTGGCGTATTGTT-AGGAAAG-CCTTTGTGACTAATCTTATGA
* *
63880757 ACAGCCTTTGTGGCGTATTGTTTGGAAAGCCTTTGTG
1 AAAGCCTTTGTGGCGTATTGTTAGGAAAGCCTTTGTG
63880794 GCATATTATG
Statistics
Matches: 71, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
49 2 0.03
50 28 0.39
51 39 0.55
52 2 0.03
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.38
Consensus pattern (50 bp):
AAAGCCTTTGTGGCGTATTGTTAGGAAAGCCTTTGTGACTAATCTTATGA
Found at i:63880800 original size:25 final size:23
Alignment explanation
Indices: 63880651--63880810 Score: 88
Period size: 25 Copynumber: 6.4 Consensus size: 23
63880641 AAATGGATTA
63880651 TTTGGAAAGCCTTTGTAGTG-TATT
1 TTTGGAAAGCCTTTGT-G-GCTATT
*
63880675 GTTAGGAAAGCCTTTGTGGCTAATCT
1 -TTTGGAAAGCCTTTGTGGCT-AT-T
* * * *
63880701 TATGAAAAGTCTTTATGGCATATT
1 TTTGGAAAGCCTTTGTGGC-TATT
* ** *
63880725 TTCAGGAAAGCCCTTTGTTACTAAT
1 TT-TGGAAAG-CCTTTGTGGCTATT
*
63880750 CTTGTGAACAGCCTTTGTGGCGTATT
1 TTTG-GAA-AGCCTTTGTGGC-TATT
63880776 GTTTGGAAAGCCTTTGTGGCATATT
1 -TTTGGAAAGCCTTTGTGGC-TATT
*
63880801 ATGTGGAAAG
1 -TTTGGAAAG
63880811 ACTGTATGAC
Statistics
Matches: 102, Mismatches: 23, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
23 1 0.01
24 5 0.05
25 77 0.75
26 16 0.16
27 3 0.03
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (23 bp):
TTTGGAAAGCCTTTGTGGCTATT
Done.