Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 193 of 276
Found at i:63884266 original size:48 final size:47
Alignment explanation
Indices: 63884166--63884305 Score: 163
Period size: 47 Copynumber: 2.9 Consensus size: 47
63884156 TCGTCTGTCC
* * * * *
63884166 GAAACACCATTTGTGGATAAGCCACCTCTAATTTGTAGATAAACTGCCACT
1 GAAACA-C-TTTGTGGACAAGCCACCACT--TATGTAGATAAATTGACACT
*
63884217 GATAACATTTTGTGGACAAGCCACCACTTATGTAGATAAATTGACACT
1 GA-AACACTTTGTGGACAAGCCACCACTTATGTAGATAAATTGACACT
**
63884265 GAAACACTTTGTGGACAAGATACCACTTATGTAGATAAATT
1 GAAACACTTTGTGGACAAGCCACCACTTATGTAGATAAATT
63884306 TCCACATACT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
47 36 0.46
48 19 0.24
50 18 0.23
51 2 0.03
52 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (47 bp):
GAAACACTTTGTGGACAAGCCACCACTTATGTAGATAAATTGACACT
Found at i:63889864 original size:14 final size:14
Alignment explanation
Indices: 63889845--63889872 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63889835 CCAACCATGC
63889845 CTTGTGGTAGGATA
1 CTTGTGGTAGGATA
63889859 CTTGTGGTAGGATA
1 CTTGTGGTAGGATA
63889873 TGGTGTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.36, T:0.36
Consensus pattern (14 bp):
CTTGTGGTAGGATA
Found at i:63892276 original size:38 final size:38
Alignment explanation
Indices: 63892234--63892358 Score: 250
Period size: 38 Copynumber: 3.3 Consensus size: 38
63892224 ATAGACATGC
63892234 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
63892272 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
63892310 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
63892348 ATGTTCGGCCA
1 ATGTTCGGCCA
63892359 TAAGTAAGCA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 87 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.31
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:63893002 original size:40 final size:40
Alignment explanation
Indices: 63892947--63893244 Score: 476
Period size: 40 Copynumber: 7.5 Consensus size: 40
63892937 TGGATGATAA
* * *
63892947 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
63892987 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
63893027 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63893067 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
63893107 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
63893147 CCGGGCTATGTCCCGAAGGCATTTGTGCGAATTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63893187 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
63893227 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63893245 TACTTGGTTT
Statistics
Matches: 244, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 17 0.07
40 227 0.93
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63894926 original size:183 final size:184
Alignment explanation
Indices: 63894606--63894973 Score: 571
Period size: 183 Copynumber: 2.0 Consensus size: 184
63894596 ATATCTAGCT
* * * * * *
63894606 CGATGTCCCCTGTGATCTTAAATATTTTATATATAATAGGGTTCAATGACGTTAGATATGTACAT
1 CGATATCCCCTGCGATATTAAATATGTCATATATAATAGAGTTCAATGACGTTAGATATGTACAT
***
63894671 TTCAAGCTCAAAATTCTTCTTCGGATCCCCACTTTCTGCCTAATATTTGTTTGAAGCTCTTTTAA
66 TTCAAGCTCAAAATTCTTCTTCGGATCCCCACTTTCTGCCTAATATTTGTCCAAAGCTCTTTTAA
63894736 CGTTATGCTC-CGTTAAAAGCCAAACTTTTAGATTGGGCTAATACAAAAACGTG
131 CGTTATGCTCTCGTTAAAAGCCAAACTTTTAGATTGGGCTAATACAAAAACGTG
*
63894789 CGATATCCCCTGCGATATTAAATATGTCATATATAATAGAGTTCAATGACGTTA-ACTATGTGCA
1 CGATATCCCCTGCGATATTAAATATGTCATATATAATAGAGTTCAATGACGTTAGA-TATGTACA
*
63894853 TTTCAAGCTCAAAATTCTTCTTCGGATCCCCACTTT-TCGCCTAATCTTTGTCCAAAGCTCTTTT
65 TTTCAAGCTCAAAATTCTTCTTCGGATCCCCACTTTCT-GCCTAATATTTGTCCAAAGCTCTTTT
* * *
63894917 AATGTTATGCTCTGGTTAAAAGCCAAACTTTTAGTTTGGGCTAATACAAAAACGTG
129 AACGTTATGCTCTCGTTAAAAGCCAAACTTTTAGATTGGGCTAATACAAAAACGTG
63894973 C
1 C
63894974 CCAATTTCAA
Statistics
Matches: 168, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
182 2 0.01
183 124 0.74
184 42 0.25
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (184 bp):
CGATATCCCCTGCGATATTAAATATGTCATATATAATAGAGTTCAATGACGTTAGATATGTACAT
TTCAAGCTCAAAATTCTTCTTCGGATCCCCACTTTCTGCCTAATATTTGTCCAAAGCTCTTTTAA
CGTTATGCTCTCGTTAAAAGCCAAACTTTTAGATTGGGCTAATACAAAAACGTG
Found at i:63896322 original size:154 final size:151
Alignment explanation
Indices: 63895863--63896375 Score: 403
Period size: 153 Copynumber: 3.3 Consensus size: 151
63895853 CATTTGAATG
* * * *
63895863 AAAAACGCCGCTATAAT-TTCACCTTTAGCGGCGCTTTTTAAAAAAACGCCGC-AAA-ACTTATG
1 AAAAACACCGCTAT-ATGTACACCTTTAGCGGCGCTTTTT--AAAAACGCCGCAAAAGATTTA-A
* * * * * * * * * * **
63895925 CTAAACGCCGTCGTTTT-AACTGAG-CTTCAGCGGTTTTAGCGGCATTTTTTGAAAAGCGCCGCT
62 CAAAATGCCGTCATTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCA-CTTTTAAAAAAAGCCGCT
*
63895988 AAAGATCGAGTATTAGCAGTGCCTTTTA
126 AAAGATCGAGTATTAGCA--GCCTTTTT
* * ** * *
63896016 AAAAACACCGCTA-ATGTCAGATCTTTAGCGGCGCTTTACAAAAAACGTCGCAAAATATTTAACA
1 AAAAACACCGCTATATGT-ACACCTTTAGCGGCGCTTT-TTAAAAACGCCGCAAAAGATTTAACA
* * *
63896080 CAATGCCGTCATTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCACTTTTAAAAACA-CTGCTAAA
64 AAATGCCGTCATTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCACTTTTAAAAAAAGCCGCTAAA
* ** *
63896144 GATCAAGTATTACCGGTGCTTTTTT
129 GATCGAGTATTA--GCAGCCTTTTT
* **
63896169 AAAAACACCGCTATATGTACACCTTTAGCAGCG-TGTTTTAGAAAACGCCGCAAAAGACTTTTGC
1 AAAAACACCGCTATATGTACACCTTTAGCGGCGCT-TTTTA-AAAACGCCGCAAAAGA-TTTAAC
** * * **
63896233 AAAATGTTGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGCGGTGCTTTTAAAAAAATGCCGCTA
63 AAAATGCCGTCATTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCACTTTTAAAAAAA-GCCGCTA
* *
63896298 AAGATCGATTATTAGCAGCGTTTTTT
127 AAGATCGAGTATTAGCAGC-CTTTTT
* * * *
63896324 AAGAAACGCCACTATAGGTACACCTTTAGCGGCGCTTTTTTAAAAATGCCGC
1 AA-AAACACCGCTATATGTACACCTTTAGCGGCGC-TTTTTAAAAACGCCGC
63896376 TATATGTACA
Statistics
Matches: 286, Mismatches: 55, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
151 2 0.01
152 13 0.05
153 109 0.38
154 77 0.27
155 26 0.09
156 53 0.19
157 5 0.02
158 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (151 bp):
AAAAACACCGCTATATGTACACCTTTAGCGGCGCTTTTTAAAAACGCCGCAAAAGATTTAACAAA
ATGCCGTCATTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCACTTTTAAAAAAAGCCGCTAAAGA
TCGAGTATTAGCAGCCTTTTT
Found at i:63896363 original size:40 final size:40
Alignment explanation
Indices: 63896309--63896394 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
63896299 AGATCGATTA
*
63896309 TTAGCAGCG-TTTTTTAAGAAACGCCACTATAGGTACACCT
1 TTAGCGGCGCTTTTTTAA-AAACGCCACTATAGGTACACCT
* * *
63896349 TTAGCGGCGCTTTTTTAAAAATGCCGCTATATGTACACCT
1 TTAGCGGCGCTTTTTTAAAAACGCCACTATAGGTACACCT
63896389 TTAGCG
1 TTAGCG
63896395 ATGTTTTTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 33 0.80
41 8 0.20
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTTAAAAACGCCACTATAGGTACACCT
Found at i:63896375 original size:156 final size:154
Alignment explanation
Indices: 63896091--63896375 Score: 376
Period size: 156 Copynumber: 1.8 Consensus size: 154
63896081 AATGCCGTCA
* *
63896091 TTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCACTTTTAAAAACACTGCTAAAGATCAAGTATTA
1 TTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCACTTTTAAAAAAACCGCTAAAGATCAAGTATTA
* * * *
63896156 CCGGTGCTTTTTTAAAAACACCGCTATATGTACACCTTTAGCAGCGTGTTTTAGAAAACGCCGCA
66 CCAGCGCTTTTTTAAAAACACCACTATAGGTACACCTTTAGCAGCGTGTTTTAGAAAACGCCGCA
63896221 AAAGACTTTTGCAAAATGTTGTCG
131 AAAGACTTTTGCAAAATGTTGTCG
* ** * *
63896245 TTTTGTATTGAGCTTTTAGTGGCTTTAGCGGTGCTTTTAAAAAAATGCCGCTAAAGATCGATTAT
1 TTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCACTTTTAAAAAAA--CCGCTAAAGATCAAGTAT
* * * * *
63896310 TAGCAGCG-TTTTTTAAGAAACGCCACTATAGGTACACCTTTAGCGGCGCTTTTTTA-AAAATGC
64 TACCAGCGCTTTTTTAA-AAACACCACTATAGGTACACCTTTAGCAGCG-TGTTTTAGAAAACGC
63896373 CGC
127 CGC
63896376 TATATGTACA
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
154 41 0.37
155 8 0.07
156 56 0.50
157 6 0.05
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (154 bp):
TTTTGTATTGAGCCTTTAGTGGCTTTAGCGGCACTTTTAAAAAAACCGCTAAAGATCAAGTATTA
CCAGCGCTTTTTTAAAAACACCACTATAGGTACACCTTTAGCAGCGTGTTTTAGAAAACGCCGCA
AAAGACTTTTGCAAAATGTTGTCG
Found at i:63896722 original size:15 final size:14
Alignment explanation
Indices: 63896702--63896736 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
63896692 ACTATTTTAA
*
63896702 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
63896716 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
63896731 GGTTTA
1 GGTTTA
63896737 AGAGTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:63896722 original size:22 final size:22
Alignment explanation
Indices: 63896651--63896732 Score: 55
Period size: 22 Copynumber: 3.8 Consensus size: 22
63896641 TTATAGTTTA
* * *
63896651 GGGTTTACGGTATATGG-TTAA
1 GGGTTTAAGGTTTATGGATTAT
*
63896672 GGGTTTAATGTTTATGAGATACTAT
1 GGGTTTAAGGTTTATG-GAT--TAT
63896697 ---TTTAAGGTTTATGGATTAT
1 GGGTTTAAGGTTTATGGATTAT
* *
63896716 GGGTTTAGGGATTATGG
1 GGGTTTAAGGTTTATGG
63896733 TTTAAGAGTG
Statistics
Matches: 47, Mismatches: 7, Indels: 13
0.70 0.10 0.19
Matches are distributed among these distances:
19 3 0.06
21 16 0.34
22 25 0.53
23 1 0.02
25 2 0.04
ACGTcount: A:0.24, C:0.02, G:0.30, T:0.43
Consensus pattern (22 bp):
GGGTTTAAGGTTTATGGATTAT
Found at i:63896783 original size:21 final size:22
Alignment explanation
Indices: 63896759--63896811 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
63896749 CGGTTGGGGT
63896759 TTAAGGTTTAGGTGTT-ATGGG
1 TTAAGGTTTAGGTGTTCATGGG
* *
63896780 TTAAGGGTTAGGTGTTCATGGT
1 TTAAGGTTTAGGTGTTCATGGG
*
63896802 TTAGGGTTTA
1 TTAAGGTTTA
63896812 TGTTTTAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.19, C:0.02, G:0.36, T:0.43
Consensus pattern (22 bp):
TTAAGGTTTAGGTGTTCATGGG
Found at i:63896818 original size:14 final size:14
Alignment explanation
Indices: 63896787--63896858 Score: 65
Period size: 14 Copynumber: 5.1 Consensus size: 14
63896777 GGGTTAAGGG
* *
63896787 TTAGGTGTTCATGGT
1 TTAGG-GTTTATGAT
*
63896802 TTAGGGTTTATGTT
1 TTAGGGTTTATGAT
*
63896816 TTAGGATTTATGAT
1 TTAGGGTTTATGAT
*
63896830 TTAGGGTTTAGGAGT
1 TTAGGGTTTATGA-T
*
63896845 TTAAGGTTTA-GAT
1 TTAGGGTTTATGAT
63896858 T
1 T
63896859 AATTAGTGTT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
13 2 0.04
14 32 0.65
15 15 0.31
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (14 bp):
TTAGGGTTTATGAT
Found at i:63896825 original size:21 final size:22
Alignment explanation
Indices: 63896800--63896855 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
63896790 GGTGTTCATG
* * *
63896800 GTTTAGGGTTTATGTTTTAGGA
1 GTTTAAGGTTTAGGGTTTAGGA
* *
63896822 -TTTATGATTTAGGGTTTAGGA
1 GTTTAAGGTTTAGGGTTTAGGA
63896843 GTTTAAGGTTTAG
1 GTTTAAGGTTTAG
63896856 ATTAATTAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.48
Consensus pattern (22 bp):
GTTTAAGGTTTAGGGTTTAGGA
Found at i:63897000 original size:14 final size:14
Alignment explanation
Indices: 63896949--63896993 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
63896939 TTAATTATCA
*
63896949 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
63896963 TTATGGTTTAGTGT
1 TTATGGTTTAGGGT
*
63896977 GTATGGTTTAGGGT
1 TTATGGTTTAGGGT
63896991 TTA
1 TTA
63896994 AGCTTTAAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:63897077 original size:7 final size:7
Alignment explanation
Indices: 63897067--63897110 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
63897057 AATGGTCAGG
63897067 GGTTTAT
1 GGTTTAT
63897074 GGTTTAT
1 GGTTTAT
63897081 GGTTTAT
1 GGTTTAT
*
63897088 GTTTTAT
1 GGTTTAT
** *
63897095 AATTTAG
1 GGTTTAT
63897102 GGTTTAT
1 GGTTTAT
63897109 GG
1 GG
63897111 AGATATGGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.55
Consensus pattern (7 bp):
GGTTTAT
Found at i:63897138 original size:21 final size:23
Alignment explanation
Indices: 63897098--63897152 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 23
63897088 GTTTTATAAT
*
63897098 TTAGGGTTTATGGAGATATG-GG
1 TTAGGGGTTATGGAGATATGAGG
* *
63897120 TTAGGGGTTA-GGGGATATGAGT
1 TTAGGGGTTATGGAGATATGAGG
*
63897142 TTAGGGTTTAT
1 TTAGGGGTTAT
63897153 ATTAATTAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.22, C:0.00, G:0.40, T:0.38
Consensus pattern (23 bp):
TTAGGGGTTATGGAGATATGAGG
Found at i:63897527 original size:21 final size:21
Alignment explanation
Indices: 63897502--63897548 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
63897492 TTAGCGTGTA
*
63897502 GGTTTATTG-TCTATGATTTAG
1 GGTTTA-TGATCTAGGATTTAG
*
63897523 GGTTTATGATCTAGGATTTGG
1 GGTTTATGATCTAGGATTTAG
63897544 GGTTT
1 GGTTT
63897549 GGTGTTTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.17, C:0.04, G:0.30, T:0.49
Consensus pattern (21 bp):
GGTTTATGATCTAGGATTTAG
Found at i:63898048 original size:41 final size:41
Alignment explanation
Indices: 63897963--63898048 Score: 109
Period size: 41 Copynumber: 2.1 Consensus size: 41
63897953 GTTTTTGGGT
* * **
63897963 AAAACGCCGTAAAAAGTTGAGCTATAATAACGTTTTTAGTA
1 AAAACGCCGTAAAAAATTGAGCTATAATAACGTTTTCACAA
* **
63898004 AAAATGCCGTAAAAAATTGAGCTATAATGGCGTTTTCACAA
1 AAAACGCCGTAAAAAATTGAGCTATAATAACGTTTTCACAA
63898045 AAAA
1 AAAA
63898049 ATCCGAGAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (41 bp):
AAAACGCCGTAAAAAATTGAGCTATAATAACGTTTTCACAA
Found at i:63898398 original size:3 final size:3
Alignment explanation
Indices: 63898329--63898378 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
63898319 AATGGAAGTT
* *
63898329 GAA G-A GAA GGA GAA CGAG GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
63898374 GAA GA
1 GAA GA
63898379 GGGGGGAGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.60, C:0.02, G:0.38, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:63902929 original size:19 final size:19
Alignment explanation
Indices: 63902907--63902963 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
63902897 TGAATCAATT
63902907 TTTATGTATTAAATTTAAA
1 TTTATGTATTAAATTTAAA
* *
63902926 TTTATTTATT---TTTATA
1 TTTATGTATTAAATTTAAA
*
63902942 TTTA-GTTTTGAAATTTAAA
1 TTTATGTATT-AAATTTAAA
63902961 TTT
1 TTT
63902964 TAATAGAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
15 3 0.10
16 9 0.31
19 17 0.59
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
TTTATGTATTAAATTTAAA
Found at i:63904718 original size:7 final size:7
Alignment explanation
Indices: 63904708--63904743 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
63904698 TTTTATATAC
63904708 TAATAAA
1 TAATAAA
63904715 TAATAAA
1 TAATAAA
63904722 TAATGAAA
1 TAAT-AAA
*
63904730 TAATATA
1 TAATAAA
63904737 TAATAAA
1 TAATAAA
63904744 AGGAAGATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:63904732 original size:15 final size:14
Alignment explanation
Indices: 63904708--63904743 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
63904698 TTTTATATAC
63904708 TAATAAATAATAAA
1 TAATAAATAATAAA
*
63904722 TAATGAAATAATATA
1 TAAT-AAATAATAAA
63904737 TAATAAA
1 TAATAAA
63904744 AGGAAGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:63904780 original size:10 final size:10
Alignment explanation
Indices: 63904761--63904849 Score: 60
Period size: 10 Copynumber: 8.9 Consensus size: 10
63904751 TATTATAGGG
*
63904761 AATAATATAT
1 AATAAAATAT
63904771 AATAAAATAT
1 AATAAAATAT
*
63904781 GAT---ATAT
1 AATAAAATAT
63904788 AATAAAATATAT
1 AAT-AAA-ATAT
63904800 AAATAAAATAT
1 -AATAAAATAT
*
63904811 AATGAAATAT
1 AATAAAATAT
*
63904821 AA-ATAATAT
1 AATAAAATAT
*
63904830 GATAAAATAT
1 AATAAAATAT
*
63904840 CATATAAATA
1 AATA-AAATA
63904850 AAAATAATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
7 6 0.10
9 6 0.10
10 31 0.50
11 9 0.15
12 7 0.11
13 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (10 bp):
AATAAAATAT
Found at i:63904785 original size:17 final size:16
Alignment explanation
Indices: 63904765--63904833 Score: 68
Period size: 17 Copynumber: 4.2 Consensus size: 16
63904755 ATAGGGAATA
63904765 ATATATAATAAAATATG
1 ATATATAA-AAAATATG
63904782 ATATATAATAAAATAT-
1 ATATATAA-AAAATATG
* *
63904798 ATAAATAAAATATAATG
1 ATATATAAAAAAT-ATG
* *
63904815 AAATATAAATAATATG
1 ATATATAAAAAATATG
63904831 ATA
1 ATA
63904834 AAATATCATA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
15 4 0.09
16 14 0.33
17 25 0.58
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (16 bp):
ATATATAAAAAATATG
Found at i:63904805 original size:40 final size:42
Alignment explanation
Indices: 63904761--63904858 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 42
63904751 TATTATAGGG
* *
63904761 AATAATATATAATAAAATAT-GAT-ATATAATAAAATATATA
1 AATAAAATATAATAAAATATAAATAATATAATAAAATATATA
* *
63904801 AATAAAATATAATGAAATATAAATAATATGATAAAATATCATATA
1 AATAAAATATAATAAAATATAAATAATATAAT-AAA-AT-ATATA
63904846 AATAAAA-ATAATA
1 AATAAAATATAATA
63904859 TATACTATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
40 18 0.38
41 2 0.04
42 6 0.12
43 3 0.06
44 7 0.15
45 12 0.25
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (42 bp):
AATAAAATATAATAAAATATAAATAATATAATAAAATATATA
Found at i:63904837 original size:19 final size:20
Alignment explanation
Indices: 63904761--63904849 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 20
63904751 TATTATAGGG
63904761 AATAATATATAATAAAATAT-
1 AATAA-ATATAATAAAATATA
*
63904781 GAT--ATATAATAAAATATATA
1 AATAAATATAAT-AAA-ATATA
*
63904801 AATAAAATATAATGAAATATA
1 AAT-AAATATAATAAAATATA
*
63904822 AAT-AATATGATAAAATATCA
1 AATAAATATAATAAAATAT-A
*
63904842 TATAAATA
1 AATAAATA
63904850 AAAATAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
17 7 0.13
18 3 0.05
19 17 0.31
20 7 0.13
21 12 0.22
22 2 0.04
23 7 0.13
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (20 bp):
AATAAATATAATAAAATATA
Found at i:63904855 original size:30 final size:29
Alignment explanation
Indices: 63904767--63904860 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 29
63904757 AGGGAATAAT
63904767 ATATAATAAAATATGATATATAAT-AAAAT-
1 ATATAATAAAATAT-ATATA-AATAAAAATA
*
63904796 ATATAAATAAAATATA-ATGAAATATAAATA
1 ATAT-AATAAAATATATAT-AAATAAAAATA
*
63904826 ATATGATAAAATATCATATAAATAAAAATA
1 ATATAATAAAATAT-ATATAAATAAAAATA
63904856 ATATA
1 ATATA
63904861 TACTATTTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
28 5 0.09
29 19 0.35
30 29 0.53
31 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (29 bp):
ATATAATAAAATATATATAAATAAAAATA
Found at i:63904861 original size:17 final size:15
Alignment explanation
Indices: 63904765--63904862 Score: 82
Period size: 15 Copynumber: 6.5 Consensus size: 15
63904755 ATAGGGAATA
63904765 ATATAT-AATAAAAT
1 ATATATAAATAAAAT
63904779 ATGATATATAAT-AAA-
1 AT-ATATA-AATAAAAT
63904794 ATATATAAATAAAAT
1 ATATATAAATAAAAT
63904809 ATA-ATGAAATATAAAT
1 ATATAT-AAATA-AAAT
*
63904825 A-ATAT-GATAAAAT
1 ATATATAAATAAAAT
63904838 ATCATATAAATAAAAAT
1 AT-ATATAAAT-AAAAT
63904855 AATATATA
1 -ATATATA
63904863 CTATTTTTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 23
0.73 0.02 0.24
Matches are distributed among these distances:
13 8 0.12
14 15 0.22
15 19 0.28
16 12 0.17
17 13 0.19
18 2 0.03
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATATAAATAAAAT
Found at i:63904922 original size:24 final size:24
Alignment explanation
Indices: 63904895--63904965 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
63904885 AAAAAATAAT
63904895 AAATTAAATATATAAAATGGATTA
1 AAATTAAATATATAAAATGGATTA
* *
63904919 AAATTGAAT-T-T-AAAT--AAT-
1 AAATTAAATATATAAAATGGATTA
*
63904937 AAATTAAATATATAAAAGGGATTA
1 AAATTAAATATATAAAATGGATTA
63904961 AAATT
1 AAATT
63904966 GAATTTAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 12
0.68 0.09 0.23
Matches are distributed among these distances:
18 8 0.22
19 3 0.08
20 1 0.03
21 7 0.19
22 1 0.03
23 3 0.08
24 13 0.36
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (24 bp):
AAATTAAATATATAAAATGGATTA
Found at i:63904943 original size:42 final size:42
Alignment explanation
Indices: 63904888--63904981 Score: 163
Period size: 42 Copynumber: 2.3 Consensus size: 42
63904878 ATTAAAAAAA
*
63904888 AAATAATAAATTAAATATATAAAATGGATTAAAATTGAATTT
1 AAATAATAAATTAAATATATAAAAGGGATTAAAATTGAATTT
63904930 AAATAATAAATTAAATATATAAAAGGGATTAAAATTGAATTT
1 AAATAATAAATTAAATATATAAAAGGGATTAAAATTGAATTT
*
63904972 AATTAA-AAAT
1 AAATAATAAAT
63904982 CTAGGGCTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 4 0.08
42 46 0.92
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (42 bp):
AAATAATAAATTAAATATATAAAAGGGATTAAAATTGAATTT
Found at i:63906532 original size:44 final size:44
Alignment explanation
Indices: 63906417--63906780 Score: 376
Period size: 44 Copynumber: 8.3 Consensus size: 44
63906407 TCAAGAAAGT
* * *
63906417 CAAATCTGCTATCTTCAACCTGCT-TCCT-ATCAATATAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCT-CTGA-CAATACAGAGACGC
* * ** * *
63906461 C-AAGCCGAAATGTTCGATCTACTCTCTGACAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* * * * * *
63906504 CGAATCCGCTACCCTCGATCTGCTCTCTGACAATACAGAGGCAC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* * * * * *
63906548 CAAATCTACCATCTTCGACCTGCTATCTCACAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* *
63906592 CAAATCTGCTATCTTCGATCTGCTCTTTGACAATACAGGGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* * * * *
63906636 CAAATCTACTATCTACGATTTGCTCTCTGACAATACAGGGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* * * *
63906680 CAAATCTACTATCTTTGATCCGCT-TCCTGACAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCT-CTGACAATACAGAGACGC
*
63906724 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGGGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
63906768 CAAATCTGCTATC
1 CAAATCTGCTATC
63906781 GGTGATCTAC
Statistics
Matches: 262, Mismatches: 53, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
43 31 0.12
44 230 0.88
45 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (44 bp):
CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
Found at i:63906665 original size:132 final size:130
Alignment explanation
Indices: 63906473--63906780 Score: 433
Period size: 132 Copynumber: 2.3 Consensus size: 130
63906463 AGCCGAAATG
* * * * *
63906473 TTCGATCTACTCTCTGACAATACAGAGACGCCGAATCCGCTACCCTCGATCTGCTCTCTGACAAT
1 TTCGATCTGCTCTCTGACAATACAGGGACGCCAAATCTGCTA-TCTCGATCTGCTCTCTGACAAT
63906538 ACAGAGGCA-CCAAATCTACCATCTTCGA-CCTGCTAT-CTCACAATACAGAGATGCCAAATCTG
65 ACAG-GG-AGCCAAATCTACCATCTTCGATCC-GCT-TCCTCACAATACAGAGATGCCAAATCTG
63906600 CTATC
126 CTATC
* * *
63906605 TTCGATCTGCTCTTTGACAATACAGGGACGCCAAATCTACTATCTACGATTTGCTCTCTGACAAT
1 TTCGATCTGCTCTCTGACAATACAGGGACGCCAAATCTGCTATCT-CGATCTGCTCTCTGACAAT
* * *
63906670 ACAGGGATGCCAAATCTACTATCTTTGATCCGCTTCCTGACAATACAGAGATGCCAAATCTGCTA
65 ACAGGGA-GCCAAATCTACCATCTTCGATCCGCTTCCTCACAATACAGAGATGCCAAATCTGCTA
63906735 TC
129 TC
63906737 TTCGATCTGCTCTCTGACAATACAGGGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGGGACGCCAAATCTGCTATC
63906781 GGTGATCTAC
Statistics
Matches: 158, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
130 1 0.01
131 5 0.03
132 150 0.95
133 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (130 bp):
TTCGATCTGCTCTCTGACAATACAGGGACGCCAAATCTGCTATCTCGATCTGCTCTCTGACAATA
CAGGGAGCCAAATCTACCATCTTCGATCCGCTTCCTCACAATACAGAGATGCCAAATCTGCTATC
Found at i:63918785 original size:7 final size:7
Alignment explanation
Indices: 63918775--63918810 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
63918765 TTTTATATAC
63918775 TAATAAA
1 TAATAAA
63918782 TAATAAA
1 TAATAAA
63918789 TAATGAAA
1 TAAT-AAA
*
63918797 TAATATA
1 TAATAAA
63918804 TAATAAA
1 TAATAAA
63918811 AGGAAGATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:63918846 original size:15 final size:15
Alignment explanation
Indices: 63918769--63918979 Score: 109
Period size: 15 Copynumber: 13.9 Consensus size: 15
63918759 TTTAATTTTT
63918769 ATATACTAAT-AAATA
1 ATATA-TAATAAAATA
* *
63918784 ATAAATAATGAAATA
1 ATATATAATAAAATA
*
63918799 ATATATAATAAAAGGA
1 ATATATAATAAAA-TA
* * *
63918815 AGATATTATAGGGAATA
1 ATATATAATA--AAATA
63918832 ATATATAATAAAATA
1 ATATATAATAAAATA
63918847 TGATATATAATAAAAT-
1 --ATATATAATAAAATA
63918863 ATATA-AATAAAAT-
1 ATATATAATAAAATA
63918876 ATA-ATGAAATATAAATA
1 ATATAT--AATA-AAATA
* *
63918893 ATATGATAA-AATATC
1 ATAT-ATAATAAAATA
63918908 ATATA-AATAAAAATA
1 ATATATAAT-AAAATA
* *** *
63918923 ATATATACTATTTTT
1 ATATATAATAAAATA
63918938 ATATATAATTAAAA-A
1 ATATATAA-TAAAATA
* *
63918953 ATAAATAATAAATTA
1 ATATATAATAAAATA
63918968 A-ATAT-ATAAAAT
1 ATATATAATAAAAT
63918980 GGATTAAAAT
Statistics
Matches: 149, Mismatches: 29, Indels: 38
0.69 0.13 0.18
Matches are distributed among these distances:
12 1 0.01
13 19 0.13
14 17 0.11
15 62 0.42
16 18 0.12
17 28 0.19
18 2 0.01
19 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (15 bp):
ATATATAATAAAATA
Found at i:63918847 original size:10 final size:10
Alignment explanation
Indices: 63918828--63918916 Score: 60
Period size: 10 Copynumber: 8.9 Consensus size: 10
63918818 TATTATAGGG
*
63918828 AATAATATAT
1 AATAAAATAT
63918838 AATAAAATAT
1 AATAAAATAT
*
63918848 GAT---ATAT
1 AATAAAATAT
63918855 AATAAAATATAT
1 AAT-AAA-ATAT
63918867 AAATAAAATAT
1 -AATAAAATAT
*
63918878 AATGAAATAT
1 AATAAAATAT
*
63918888 AA-ATAATAT
1 AATAAAATAT
*
63918897 GATAAAATAT
1 AATAAAATAT
*
63918907 CATATAAATA
1 AATA-AAATA
63918917 AAAATAATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
7 6 0.10
9 6 0.10
10 31 0.50
11 9 0.15
12 7 0.11
13 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (10 bp):
AATAAAATAT
Found at i:63918852 original size:17 final size:16
Alignment explanation
Indices: 63918832--63918900 Score: 68
Period size: 17 Copynumber: 4.2 Consensus size: 16
63918822 ATAGGGAATA
63918832 ATATATAATAAAATATG
1 ATATATAA-AAAATATG
63918849 ATATATAATAAAATAT-
1 ATATATAA-AAAATATG
* *
63918865 ATAAATAAAATATAATG
1 ATATATAAAAAAT-ATG
* *
63918882 AAATATAAATAATATG
1 ATATATAAAAAATATG
63918898 ATA
1 ATA
63918901 AAATATCATA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
15 4 0.09
16 14 0.33
17 25 0.58
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (16 bp):
ATATATAAAAAATATG
Found at i:63918872 original size:40 final size:42
Alignment explanation
Indices: 63918828--63918925 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 42
63918818 TATTATAGGG
* *
63918828 AATAATATATAATAAAATAT-GAT-ATATAATAAAATATATA
1 AATAAAATATAATAAAATATAAATAATATAATAAAATATATA
* *
63918868 AATAAAATATAATGAAATATAAATAATATGATAAAATATCATATA
1 AATAAAATATAATAAAATATAAATAATATAAT-AAA-AT-ATATA
63918913 AATAAAA-ATAATA
1 AATAAAATATAATA
63918926 TATACTATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
40 18 0.38
41 2 0.04
42 6 0.12
43 3 0.06
44 7 0.15
45 12 0.25
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (42 bp):
AATAAAATATAATAAAATATAAATAATATAATAAAATATATA
Found at i:63918904 original size:19 final size:20
Alignment explanation
Indices: 63918828--63918916 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 20
63918818 TATTATAGGG
63918828 AATAATATATAATAAAATAT-
1 AATAA-ATATAATAAAATATA
*
63918848 GAT--ATATAATAAAATATATA
1 AATAAATATAAT-AAA-ATATA
*
63918868 AATAAAATATAATGAAATATA
1 AAT-AAATATAATAAAATATA
*
63918889 AAT-AATATGATAAAATATCA
1 AATAAATATAATAAAATAT-A
*
63918909 TATAAATA
1 AATAAATA
63918917 AAAATAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
17 7 0.13
18 3 0.05
19 17 0.31
20 7 0.13
21 12 0.22
22 2 0.04
23 7 0.13
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (20 bp):
AATAAATATAATAAAATATA
Found at i:63929516 original size:17 final size:17
Alignment explanation
Indices: 63929494--63929529 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
63929484 GACTGTAAAA
63929494 TTTTATTATTTTA-TTAT
1 TTTTATT-TTTTATTTAT
63929511 TTTTATTTTTTATTTAT
1 TTTTATTTTTTATTTAT
63929528 TT
1 TT
63929530 ATTTTACGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTATTTTTTATTTAT
Found at i:63940304 original size:43 final size:44
Alignment explanation
Indices: 63940192--63940318 Score: 122
Period size: 43 Copynumber: 3.0 Consensus size: 44
63940182 CAATGCCAAC
*
63940192 GTCCCAAACGTGGTTTTACA-AGT-AATCAAATATCGATACCACT
1 GTCCCAAACATGGTTTTACACA-TAAATCAAATATCGATACCACT
* * * *
63940235 GTCCCAAACAGGGTCTTACACA-AAATCAAATA-CGATGTCGA-T
1 GTCCCAAACATGGTTTTACACATAAATCAAATATCGAT-ACCACT
* *
63940277 GTCCCAGACATGGTTTTACACATAAATCATAA-GTCGATACCA
1 GTCCCAAACATGGTTTTACACATAAATCA-AATATCGATACCA
63940319 ACGTTCCAGA
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
42 24 0.36
43 36 0.54
44 7 0.10
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (44 bp):
GTCCCAAACATGGTTTTACACATAAATCAAATATCGATACCACT
Found at i:63954460 original size:25 final size:25
Alignment explanation
Indices: 63954428--63954480 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
63954418 CTTATCTAAC
63954428 AACCAAGCTTAATAATCTTTCATCA
1 AACCAAGCTTAATAATCTTTCATCA
63954453 AACCAAGCTTAATAATCTTTCATCA
1 AACCAAGCTTAATAATCTTTCATCA
63954478 AAC
1 AAC
63954481 TTCAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.25, G:0.04, T:0.30
Consensus pattern (25 bp):
AACCAAGCTTAATAATCTTTCATCA
Found at i:63964645 original size:12 final size:12
Alignment explanation
Indices: 63964628--63964652 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63964618 GTTTCCACTT
63964628 TGCTGGAATTTC
1 TGCTGGAATTTC
63964640 TGCTGGAATTTC
1 TGCTGGAATTTC
63964652 T
1 T
63964653 AGTGTGACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (12 bp):
TGCTGGAATTTC
Found at i:63968798 original size:11 final size:11
Alignment explanation
Indices: 63968782--63968806 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63968772 ATATGATATT
63968782 TTATTATTTTA
1 TTATTATTTTA
63968793 TTATTATTTTA
1 TTATTATTTTA
63968804 TTA
1 TTA
63968807 ATATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:63970897 original size:11 final size:11
Alignment explanation
Indices: 63970881--63970905 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63970871 TTATATATAC
63970881 TAATAAAATAA
1 TAATAAAATAA
63970892 TAATAAAATAA
1 TAATAAAATAA
63970903 TAA
1 TAA
63970906 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:63970920 original size:13 final size:11
Alignment explanation
Indices: 63970885--63970941 Score: 55
Period size: 11 Copynumber: 5.0 Consensus size: 11
63970875 ATATACTAAT
63970885 AAAAT-AATAA
1 AAAATCAATAA
63970895 TAAAAT-AATAA
1 -AAAATCAATAA
*
63970906 AATATCATATAA
1 AAAATCA-ATAA
63970918 AAAATCAAATTAA
1 AAAATC-AA-TAA
63970931 AAAATCAATAA
1 AAAATCAATAA
63970942 CTAATAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
10 4 0.10
11 14 0.35
12 12 0.30
13 10 0.25
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (11 bp):
AAAATCAATAA
Found at i:63970955 original size:4 final size:4
Alignment explanation
Indices: 63970946--63970973 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
63970936 CAATAACTAA
63970946 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
63970974 CTAAAATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:63977386 original size:264 final size:264
Alignment explanation
Indices: 63976916--63977445 Score: 1060
Period size: 264 Copynumber: 2.0 Consensus size: 264
63976906 TCATTGCAAA
63976916 TAGCGATTTTTGACTCAAAGCATCAGCAAGCACATTTGCTTTTCCCGGGTGATAATCAACCACAA
1 TAGCGATTTTTGACTCAAAGCATCAGCAAGCACATTTGCTTTTCCCGGGTGATAATCAACCACAA
63976981 GTTCGTAGTCCTTTAGCAGTTCTAACCATCTTCTCTATCGCAAATTCAAATCTTTTTGCGTCATT
66 GTTCGTAGTCCTTTAGCAGTTCTAACCATCTTCTCTATCGCAAATTCAAATCTTTTTGCGTCATT
63977046 AAATATTTTAGACTTTTATGATCAGAAAACACGTGACATTTCTTACCAAACAGATAGTGATGCCA
131 AAATATTTTAGACTTTTATGATCAGAAAACACGTGACATTTCTTACCAAACAGATAGTGATGCCA
63977111 GATCTTCAAAGCAAACACAATGGCAGCTAACTCAAGGTCGTATGTCGGATAGTTCTTCTCATGCG
196 GATCTTCAAAGCAAACACAATGGCAGCTAACTCAAGGTCGTATGTCGGATAGTTCTTCTCATGCG
63977176 GCTT
261 GCTT
63977180 TAGCGATTTTTGACTCAAAGCATCAGCAAGCACATTTGCTTTTCCCGGGTGATAATCAACCACAA
1 TAGCGATTTTTGACTCAAAGCATCAGCAAGCACATTTGCTTTTCCCGGGTGATAATCAACCACAA
63977245 GTTCGTAGTCCTTTAGCAGTTCTAACCATCTTCTCTATCGCAAATTCAAATCTTTTTGCGTCATT
66 GTTCGTAGTCCTTTAGCAGTTCTAACCATCTTCTCTATCGCAAATTCAAATCTTTTTGCGTCATT
63977310 AAATATTTTAGACTTTTATGATCAGAAAACACGTGACATTTCTTACCAAACAGATAGTGATGCCA
131 AAATATTTTAGACTTTTATGATCAGAAAACACGTGACATTTCTTACCAAACAGATAGTGATGCCA
63977375 GATCTTCAAAGCAAACACAATGGCAGCTAACTCAAGGTCGTATGTCGGATAGTTCTTCTCATGCG
196 GATCTTCAAAGCAAACACAATGGCAGCTAACTCAAGGTCGTATGTCGGATAGTTCTTCTCATGCG
63977440 GCTT
261 GCTT
63977444 TA
1 TA
63977446 CTTGTCTCGA
Statistics
Matches: 266, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
264 266 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (264 bp):
TAGCGATTTTTGACTCAAAGCATCAGCAAGCACATTTGCTTTTCCCGGGTGATAATCAACCACAA
GTTCGTAGTCCTTTAGCAGTTCTAACCATCTTCTCTATCGCAAATTCAAATCTTTTTGCGTCATT
AAATATTTTAGACTTTTATGATCAGAAAACACGTGACATTTCTTACCAAACAGATAGTGATGCCA
GATCTTCAAAGCAAACACAATGGCAGCTAACTCAAGGTCGTATGTCGGATAGTTCTTCTCATGCG
GCTT
Found at i:63981630 original size:43 final size:43
Alignment explanation
Indices: 63981583--63981684 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
63981573 TCCCGGACGT
**
63981583 GGTCTTACATGTAATTC-AATATCGATGCCTCTGTCCCAAACAG
1 GGTCTTACATGTAATTCGAATA-CGATGCCGATGTCCCAAACAG
* * * *
63981626 GGTCTTACATG-AAATCGGATACGATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAATTCGAATACGATGCCGATGTCCCAAACAG
* *
63981668 GGTCTTATACGTAATTC
1 GGTCTTACATGTAATTC
63981685 TCAATCGAGA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
42 30 0.62
43 18 0.38
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAATTCGAATACGATGCCGATGTCCCAAACAG
Found at i:63983589 original size:12 final size:12
Alignment explanation
Indices: 63983572--63983600 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
63983562 TTTAAAACAA
63983572 TTTACAATATAG
1 TTTACAATATAG
63983584 TTTACAATATAG
1 TTTACAATATAG
63983596 TTTAC
1 TTTAC
63983601 TAAAAGCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (12 bp):
TTTACAATATAG
Found at i:63988773 original size:18 final size:18
Alignment explanation
Indices: 63988750--63988788 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
63988740 ATGCCAGGTG
*
63988750 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
63988768 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
63988786 TGT
1 TGT
63988789 TTTCATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.10, T:0.41
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:63989250 original size:24 final size:24
Alignment explanation
Indices: 63989201--63989252 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 24
63989191 TAAAAGTTGC
63989201 TTTTAATATTTTAATACTAAATTAA
1 TTTTAATATTTTAATAC-AAATTAA
63989226 TTTT-ATATTTTTAATA-AAATATAA
1 TTTTAATA-TTTTAATACAAAT-TAA
63989250 TTT
1 TTT
63989253 CTTTTAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 4 0.16
24 9 0.36
25 12 0.48
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTAATATTTTAATACAAATTAA
Found at i:63992716 original size:14 final size:13
Alignment explanation
Indices: 63992697--63992745 Score: 71
Period size: 14 Copynumber: 3.6 Consensus size: 13
63992687 ATTTAATGTT
*
63992697 TAATTATATTAGGA
1 TAATTAT-TAAGGA
63992711 TAATTATTAAGAGA
1 TAATTATTAAG-GA
63992725 TAATTATTAAGGA
1 TAATTATTAAGGA
63992738 TAATTATT
1 TAATTATT
63992746 TAGATTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 13 0.39
14 20 0.61
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (13 bp):
TAATTATTAAGGA
Found at i:63992755 original size:27 final size:26
Alignment explanation
Indices: 63992703--63992763 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
63992693 TGTTTAATTA
**
63992703 TATTAGGATAATTATTAAGAGATAAT
1 TATTAGGATAATTATTAAGATTTAAT
*
63992729 TATTAAGGATAATTATTTAGATTTAAT
1 TATT-AGGATAATTATTAAGATTTAAT
63992756 T-TTAGGAT
1 TATTAGGAT
63992764 TTAATTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.16
26 6 0.19
27 20 0.65
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (26 bp):
TATTAGGATAATTATTAAGATTTAAT
Found at i:63992782 original size:10 final size:10
Alignment explanation
Indices: 63992769--63992811 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
63992759 AGGATTTAAT
63992769 TTTATTTATC
1 TTTATTTATC
*
63992779 TTTAATTATC
1 TTTATTTATC
63992789 TTTATTTAT-
1 TTTATTTATC
63992798 TTGTATTTATC
1 TT-TATTTATC
63992809 TTT
1 TTT
63992812 TAGAATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (10 bp):
TTTATTTATC
Found at i:63995072 original size:45 final size:44
Alignment explanation
Indices: 63995008--63995093 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 44
63994998 CCAAAACATG
63995008 TGTCACACATATCACGAACTCAGACCACAACTCAATGAGTTCCGT
1 TGTCACACATATCACGAACTCAGA-CACAACTCAATGAGTTCCGT
* * *
63995053 TGTCAC-CTATATCATGAACTCAGACAGAACTCGATGAGTTC
1 TGTCACAC-ATATCACGAACTCAGACACAACTCAATGAGTTC
63995094 AGATTACATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 16 0.43
45 21 0.57
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (44 bp):
TGTCACACATATCACGAACTCAGACACAACTCAATGAGTTCCGT
Found at i:63997005 original size:117 final size:117
Alignment explanation
Indices: 63996794--63997006 Score: 268
Period size: 117 Copynumber: 1.8 Consensus size: 117
63996784 GGCCAAACAT
* * * *
63996794 GAACTACTGTAGAAACAGAGCGCCCACGTGGGAGCTTTTTTCAGAAACTTTGCTGACATTCCATC
1 GAACTACTGTAGAAAAAGAGCACCCACGTGGGAGCTTTTTCCAGAAACTTTGCTCACATTCCATC
* * * *
63996859 CTGCTTGAAGCGTTTTTGACACTATTTGTTCTTCTCAAAATTATTTTTTCAG
66 CTACTTGAAGCATTTCTGACACTAGTTGTTCTTCTCAAAATTATTTTTTCAG
* * * * * *
63996911 GAACTATTGTAGAAAAATAGCATCCACGTGGGAGCTTTTTCCAGTAA-TTT-TTCACATAGTGCA
1 GAACTACTGTAGAAAAAGAGCACCCACGTGGGAGCTTTTTCCAGAAACTTTGCTCACAT--TCCA
63996974 TCCTACTTGAAGCATTTCTGACACTAGTTGTTC
64 TCCTACTTGAAGCATTTCTGACACTAGTTGTTC
63997007 ATAAACGTCT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
115 5 0.06
116 3 0.04
117 72 0.90
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (117 bp):
GAACTACTGTAGAAAAAGAGCACCCACGTGGGAGCTTTTTCCAGAAACTTTGCTCACATTCCATC
CTACTTGAAGCATTTCTGACACTAGTTGTTCTTCTCAAAATTATTTTTTCAG
Found at i:63997138 original size:33 final size:34
Alignment explanation
Indices: 63997100--63997209 Score: 129
Period size: 33 Copynumber: 3.3 Consensus size: 34
63997090 AACTAAACCC
* * *
63997100 TAATTTAATTAATTT-TAACCCTAAACCCTAATT
1 TAATTTAATTTATTTAAAACCATAAACCCTAATT
*
63997133 TAATTT-ATTTATTTAAAACCTTTAAACCCTAATT
1 TAATTTAATTTATTTAAAACC-ATAAACCCTAATT
* *
63997167 T-ACTTAATTTATTTAAAATCATAAACCCTAATT
1 TAATTTAATTTATTTAAAACCATAAACCCTAATT
63997200 TAA-TTAATTT
1 TAATTTAATTT
63997210 CTATAAAATA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
32 7 0.10
33 33 0.49
34 27 0.40
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (34 bp):
TAATTTAATTTATTTAAAACCATAAACCCTAATT
Found at i:63997218 original size:33 final size:33
Alignment explanation
Indices: 63997093--63997209 Score: 145
Period size: 34 Copynumber: 3.7 Consensus size: 33
63997083 TTAAAAAAAC
*
63997093 TAAACCCTAATTTAATTAA--T-TTT--AACCC
1 TAAACCCTAATTTAATTAATTTATTTAAAACCA
* *
63997121 TAAACCCTAATTTAATTTATTTATTTAAAACCTT
1 TAAACCCTAATTTAATTAATTTATTTAAAACC-A
* *
63997155 TAAACCCTAATTTACTTAATTTATTTAAAATCA
1 TAAACCCTAATTTAATTAATTTATTTAAAACCA
63997188 TAAACCCTAATTTAATTAATTT
1 TAAACCCTAATTTAATTAATTT
63997210 CTATAAAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
28 18 0.24
30 1 0.01
31 3 0.04
33 25 0.33
34 29 0.38
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (33 bp):
TAAACCCTAATTTAATTAATTTATTTAAAACCA
Found at i:63997309 original size:34 final size:35
Alignment explanation
Indices: 63997251--63997331 Score: 103
Period size: 34 Copynumber: 2.3 Consensus size: 35
63997241 TTAAAATCCA
*
63997251 CTAAAACCTTAAACCCTAACTTATTTTAACAAAAAC
1 CTAAAACC-TAAACCCTAAATTATTTTAACAAAAAC
** *
63997287 CTAAAACCTAAA-CCTAAATTATTTTAGGAAAACC
1 CTAAAACCTAAACCCTAAATTATTTTAACAAAAAC
63997321 CT-AAACCTAAA
1 CTAAAACCTAAA
63997332 AACCCTAGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
33 9 0.22
34 20 0.49
35 4 0.10
36 8 0.20
ACGTcount: A:0.48, C:0.23, G:0.02, T:0.26
Consensus pattern (35 bp):
CTAAAACCTAAACCCTAAATTATTTTAACAAAAAC
Found at i:64001783 original size:27 final size:27
Alignment explanation
Indices: 64001742--64001795 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
64001732 TGTCATGTGA
* *
64001742 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
64001769 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
64001796 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:64004093 original size:27 final size:27
Alignment explanation
Indices: 64004052--64004105 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
64004042 TGTCATGTGA
* *
64004052 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
64004079 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
64004106 GGTTGTATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:64009973 original size:25 final size:26
Alignment explanation
Indices: 64009931--64009979 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
64009921 TGCTAGTTAT
*
64009931 TAATATCATGATTTAAA-TAAATAAA
1 TAATATCATGATTCAAATTAAATAAA
64009956 TAATATCAT-ATCTCAAATTAAATA
1 TAATATCATGAT-TCAAATTAAATA
64009980 TATATCATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 13 0.62
26 6 0.29
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.37
Consensus pattern (26 bp):
TAATATCATGATTCAAATTAAATAAA
Found at i:64010357 original size:4 final size:4
Alignment explanation
Indices: 64010350--64010374 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
64010340 TCCATCCATC
64010350 TTCT TTCT TTCT TTCT TTCT TTCT T
1 TTCT TTCT TTCT TTCT TTCT TTCT T
64010375 ATGATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:64015111 original size:47 final size:47
Alignment explanation
Indices: 64015042--64015358 Score: 294
Period size: 47 Copynumber: 6.7 Consensus size: 47
64015032 GGTACAATAC
64015042 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
64015089 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * * *
64015136 CAATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCCAAATCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCC--ATCAAGT
* *
64015184 CTGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-AACCGT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCAA--GT
* * * *
64015233 GCCAATGCCATGTCCCAGACATGGTCTTACACTGACACATCC--CGTAGT
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATC-AAGT
* * * * * * * *
64015281 TGATG-CATGTCTCAAACAT-GTCTTACATTGGCTTACAT-CTTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATCAAGT
64015327 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
64015359 ACACGAATGA
Statistics
Matches: 221, Mismatches: 33, Indels: 33
0.77 0.11 0.11
Matches are distributed among these distances:
44 11 0.05
45 13 0.06
46 39 0.18
47 80 0.36
48 10 0.05
49 32 0.14
50 33 0.15
51 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:64015262 original size:99 final size:94
Alignment explanation
Indices: 64015044--64015274 Score: 306
Period size: 96 Copynumber: 2.4 Consensus size: 94
64015034 TACAATACCG
* * *
64015044 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAGGCGACGCCATGTCCCAGACAT
*
64015109 GGTCTTACACTGGCTCATCCATCAAGTCA
66 GGTCTTACACTAGCTCATCCATCAAGTCA
* *
64015138 ATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCCAAATCGAGGCTGACGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCC--ATCAAGGC-GACGCCATGTCCCAGA
64015202 CATGGTCTTACACTAGCTC-TCACAT-AACCGTGCCA
63 CATGGTCTTACACTAGCTCATC-CATCAA--GT--CA
*
64015237 ATGCCATGTCCCAGACATGGTCTTACACTGACACATCC
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCC
64015275 CGTAGTTGAT
Statistics
Matches: 120, Mismatches: 8, Indels: 12
0.86 0.06 0.09
Matches are distributed among these distances:
93 4 0.03
94 31 0.26
95 10 0.08
96 36 0.30
97 2 0.02
99 33 0.28
100 4 0.03
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAGGCGACGCCATGTCCCAGACAT
GGTCTTACACTAGCTCATCCATCAAGTCA
Found at i:64015307 original size:143 final size:141
Alignment explanation
Indices: 64015041--64015355 Score: 340
Period size: 143 Copynumber: 2.2 Consensus size: 141
64015031 GGGTACAATA
* * *
64015041 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGA
1 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCAATGCCATGTCCCAGA
* * *
64015106 CATGGTCTTACACTGGCTCATCCATCAAGTCAATGCCATGTCCTAGACATGGTCTTACACTGACT
66 CATGGTCTTACACTGACACATCCA-CAAGTCAATGCCATGTCCTAAACATGGTCTTACACTGACT
*
64015171 ATCCAAATCGAGG
130 -TACAAATCGAGG
*
64015184 CTGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-AACCGTGCCAATGCCATGTC
1 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCAA--GT--CAATGCCATGTC
* **
64015247 CCAGACATGGTCTTACACTGACACATCC-CGTAGTTGATG-CATGT-CTCAAACAT-GTCTTACA
61 CCAGACATGGTCTTACACTGACACATCCAC-AAGTCAATGCCATGTCCT-AAACATGGTCTTACA
* * ** *
64015308 TTGGCTTACATCTTGAGG
124 CTGACTTACAAATCGAGG
*
64015326 CCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGACGCCATGTCCCAGACATGGTCTTACACT
64015356 GGCACACGAA
Statistics
Matches: 147, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
140 10 0.07
141 14 0.10
142 16 0.11
143 51 0.35
144 13 0.09
145 6 0.04
146 37 0.25
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (141 bp):
CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCAATGCCATGTCCCAGA
CATGGTCTTACACTGACACATCCACAAGTCAATGCCATGTCCTAAACATGGTCTTACACTGACTT
ACAAATCGAGG
Found at i:64030229 original size:16 final size:16
Alignment explanation
Indices: 64030200--64030238 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
64030190 CATTCAGGGG
* *
64030200 TTTTTGGTTTTCTTTA
1 TTTTTTGTTATCTTTA
64030216 TTTTTTGTTATCTTTA
1 TTTTTTGTTATCTTTA
64030232 TTCTTTT
1 TT-TTTT
64030239 AAGATGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (16 bp):
TTTTTTGTTATCTTTA
Found at i:64043858 original size:16 final size:17
Alignment explanation
Indices: 64043837--64043873 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
64043827 TTCTTTAGAA
64043837 TTGAG-TAATTTCAAG-T
1 TTGAGTTAATTT-AAGAT
64043853 TTGAGTTAATTTAAGAT
1 TTGAGTTAATTTAAGAT
64043870 TTGA
1 TTGA
64043874 TTTGACGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.32, C:0.03, G:0.19, T:0.46
Consensus pattern (17 bp):
TTGAGTTAATTTAAGAT
Found at i:64066922 original size:46 final size:46
Alignment explanation
Indices: 64066855--64067022 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
64066845 TGTAACCCGC
*
64066855 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
64066901 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * ** * *
64066951 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
* * *
64066994 TCGTAAGTGAACTCGAACTCAACTCAACG
1 CCATAAGTGAACTCGGACTCAACTCAACG
64067023 GGTTCGGATG
Statistics
Matches: 102, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 56 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:64067022 original size:93 final size:93
Alignment explanation
Indices: 64066863--64067033 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
64066853 GCCCATAAGT
** * * *
64066863 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCCCATCCATAAGTGAACTCGAACTCAACTCAA
64066928 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
64066956 GAACTCGGACTCAACTCAACGAGTTCGAACATTCCCATTCGTAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCCCATCCATAAGTGAACTCGAACTCAACTCAA
* *
64067021 CGGGTTCGGATGC
66 CGAGCTCGGATGC
64067034 TCAACCATCT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCCCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:64075892 original size:50 final size:50
Alignment explanation
Indices: 64075773--64076252 Score: 407
Period size: 50 Copynumber: 9.6 Consensus size: 50
64075763 ATTGCGAGAA
* * * * *
64075773 CACATATGTAGTACTATGTGCAGGCTACTATGTGCTTACA-ATGATTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG-TAACAGATG--GTTAGGT
*
64075825 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATGGTTAGGT
* * *** * * *** * *
64075875 CGCATGTGTAGTACTAAGTGTAGGCTACTATACGTACCCGACAACTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGA-TGGTTAGGT
*
64075926 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATGGTTAGGT
* * * * * *
64075976 CACGTGTCTAATACTAAGT-CAGGTTACTACGTGT-ACCGAATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAG-ATGGTTAGGT
* * *
64076024 CGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATGGTTAGGT
* * * * * * *** * *
64076074 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGACAACTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGA-TGGTTAGGT
* * *
64076125 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATGGTTAGGT
* * * * * *
64076175 CACGTGTCTAATACTAAGT-CAGGTTACTACGTGT-ACCGAATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAG-ATGGTTAGGT
*
64076223 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
64076253 TGCGTACCAG
Statistics
Matches: 340, Mismatches: 79, Indels: 21
0.77 0.18 0.05
Matches are distributed among these distances:
48 40 0.12
49 65 0.19
50 122 0.36
51 80 0.24
52 33 0.10
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATGGTTAGGT
Found at i:64076065 original size:98 final size:100
Alignment explanation
Indices: 64075824--64076264 Score: 516
Period size: 101 Copynumber: 4.4 Consensus size: 100
64075814 TGATTTTAGG
* * * * *
64075824 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATGGTTAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTCTAATAC
* **
64075889 TAAGTGTAGGCTACTATACGTACCCGACAACTTTGA
66 TAAGTGCAGGCTACTACGCGTACCCGA-AACTTTGA
* *
64075925 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTCTAATAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTCTAATAC
* * * *
64075990 TAAGT-CAGGTTACTACGTGTA-CCG-AATTGTTGG
66 TAAGTGCAGGCTACTACGCGTACCCGAAACT-TTGA
* * * * *
64076023 TCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTCTAATAC
* *
64076088 TAAGTGTAGGCTACTATGCGTACCCGACAACTTTGA
66 TAAGTGCAGGCTACTACGCGTACCCGA-AACTTTGA
* * * *
64076124 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTCTAATAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTCTAATAC
* * * *
64076189 TAAGT-CAGGTTACTACGTGTA-CCG-AATTGTTGG
66 TAAGTGCAGGCTACTACGCGTACCCGAAACT-TTGA
* * *
64076222 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
64076265 AGCTTCGGTT
Statistics
Matches: 287, Mismatches: 47, Indels: 15
0.82 0.13 0.04
Matches are distributed among these distances:
97 6 0.02
98 106 0.37
99 18 0.06
100 26 0.09
101 128 0.45
102 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTCTAATAC
TAAGTGCAGGCTACTACGCGTACCCGAAACTTTGA
Found at i:64076169 original size:199 final size:199
Alignment explanation
Indices: 64075829--64076266 Score: 813
Period size: 199 Copynumber: 2.2 Consensus size: 199
64075819 TTAGGTCACG
* *
64075829 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATGGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGT
*
64075894 GTAGGCTACTATACGTACCCGACAACTTTGATCACATGTGTAGTACTAAGTGCAGGCTACTACGT
66 GTAGGCTACTATACGTACCCGACAACTTTGATCACATGTGTAGTACTAAGTGCAGGCTACTACAT
64075959 GTATCAGATGGTTAGGTCACGTGTCTAATACTAAGTCAGGTTACTACGTGTACCGAATTGTTGGT
131 GTATCAGATGGTTAGGTCACGTGTCTAATACTAAGTCAGGTTACTACGTGTACCGAATTGTTGGT
64076024 CGCA
196 CGCA
64076028 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGT
* *
64076093 GTAGGCTACTATGCGTACCCGACAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACAT
66 GTAGGCTACTATACGTACCCGACAACTTTGATCACATGTGTAGTACTAAGTGCAGGCTACTACAT
64076158 GTATCAGATGGTTAGGTCACGTGTCTAATACTAAGTCAGGTTACTACGTGTACCGAATTGTTGGT
131 GTATCAGATGGTTAGGTCACGTGTCTAATACTAAGTCAGGTTACTACGTGTACCGAATTGTTGGT
64076223 CGCA
196 CGCA
* *
64076227 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
64076267 CTTCGGTTAC
Statistics
Matches: 232, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
199 232 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (199 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGT
GTAGGCTACTATACGTACCCGACAACTTTGATCACATGTGTAGTACTAAGTGCAGGCTACTACAT
GTATCAGATGGTTAGGTCACGTGTCTAATACTAAGTCAGGTTACTACGTGTACCGAATTGTTGGT
CGCA
Found at i:64079337 original size:55 final size:53
Alignment explanation
Indices: 64079194--64079401 Score: 231
Period size: 55 Copynumber: 3.8 Consensus size: 53
64079184 ATCCTTTTGA
* * *
64079194 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAG
* * *
64079247 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG
* * * * *
64079301 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAG
*
64079355 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
64079402 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 9 0.07
55 71 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
Found at i:64079351 original size:108 final size:110
Alignment explanation
Indices: 64079194--64079394 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
64079184 ATCCTTTTGA
* *
64079194 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
64079257 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
64079302 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
64079367 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
64079395 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:64081178 original size:28 final size:29
Alignment explanation
Indices: 64081124--64081178 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
64081114 ACAGGGGTTT
*
64081124 TCACAAGGCCGAGCACATGCCCGTGTCCC
1 TCACAAGGCCGAGCACACGCCCGTGTCCC
* *
64081153 TCACATGGCCTAG-ACACGCCCGTGTC
1 TCACAAGGCCGAGCACACGCCCGTGTC
64081179 ATTGCCCGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (29 bp):
TCACAAGGCCGAGCACACGCCCGTGTCCC
Found at i:64089026 original size:13 final size:13
Alignment explanation
Indices: 64089008--64089032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64088998 CCAAGCACAC
64089008 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
64089021 GCCCGTGTCCCT
1 GCCCGTGTCCCT
64089033 CACATGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:64089864 original size:40 final size:39
Alignment explanation
Indices: 64089790--64089940 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 39
64089780 GTTATATATT
* *
64089790 GAGCATTAGCG-GCGTTTACTAAAAACGCCGCTATAGATT
1 GAGCATTAGCGTGC-TTTTCTAAAAACGCCGCTATAGATC
* * *
64089829 GAGTATTAGCAGTGCTTTTCTAAAAATGCCACTATAGATC
1 GAGCATTAGC-GTGCTTTTCTAAAAACGCCGCTATAGATC
*
64089869 GA-CTATTAGC-TGCTCTTTTTGAAAAACGCCGCTATAGATC
1 GAGC-ATTAGCGTGCT-TTTCT-AAAAACGCCGCTATAGATC
*
64089909 GAGCATTAGCG-GCGTGTTTTTAAAAACGCCGC
1 GAGCATTAGCGTGC-T-TTTCTAAAAACGCCGC
64089941 AAAAAAATTC
Statistics
Matches: 94, Mismatches: 10, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
38 4 0.04
39 13 0.14
40 68 0.72
41 9 0.10
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (39 bp):
GAGCATTAGCGTGCTTTTCTAAAAACGCCGCTATAGATC
Found at i:64090394 original size:7 final size:7
Alignment explanation
Indices: 64090356--64090453 Score: 58
Period size: 7 Copynumber: 13.4 Consensus size: 7
64090346 TTAATTATCA
*
64090356 TTATGGC
1 TTATGGT
64090363 TTA-GGAT
1 TTATGG-T
64090370 TTATGGT
1 TTATGGT
*
64090377 TTAGATCGT
1 TT--ATGGT
64090386 TTATGGT
1 TTATGGT
64090393 TTATGAGT
1 TTATG-GT
64090401 TACTAT--T
1 T--TATGGT
*
64090408 TTAAGGT
1 TTATGGT
*
64090415 TTATGGA
1 TTATGGT
64090422 TTATGGGT
1 TTAT-GGT
* *
64090430 TTAGGGA
1 TTATGGT
64090437 TTATGGT
1 TTATGGT
64090444 TTATGGT
1 TTATGGT
64090451 TTA
1 TTA
64090454 AGGGTTGGGT
Statistics
Matches: 70, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
5 2 0.03
6 2 0.03
7 47 0.67
8 10 0.14
9 6 0.09
10 3 0.04
ACGTcount: A:0.21, C:0.03, G:0.27, T:0.49
Consensus pattern (7 bp):
TTATGGT
Found at i:64090432 original size:15 final size:15
Alignment explanation
Indices: 64090412--64090459 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
64090402 ACTATTTTAA
64090412 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
64090427 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* *
64090441 GGTTTATGGTTTAAG
1 GGTTTATGGATTATG
64090456 GGTT
1 GGTT
64090460 GGGTTTAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:64090432 original size:22 final size:21
Alignment explanation
Indices: 64090407--64090456 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
64090397 GAGTTACTAT
*
64090407 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
64090429 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
64090450 TTTAAGG
1 TTTAAGG
64090457 GTTGGGTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:64090466 original size:20 final size:21
Alignment explanation
Indices: 64090427--64090520 Score: 68
Period size: 20 Copynumber: 4.5 Consensus size: 21
64090417 ATGGATTATG
* *
64090427 GGTTT-AGGGATTATGGTTTAT
1 GGTTTAAGGG-TTAGGGTTTAA
64090448 GGTTTAAGGGTT-GGGTTTAA
1 GGTTTAAGGGTTAGGGTTTAA
*
64090468 GGTTTAGGGGTTAGGG-TTAA
1 GGTTTAAGGGTTAGGGTTTAA
** * *
64090488 TATGATAGGGGTTAGGGGTTTAA
1 GGT-TTAAGGGTTA-GGGTTTAA
*
64090511 GGGTTAAGGG
1 GGTTTAAGGG
64090521 GGTAAGGGTT
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
20 22 0.39
21 19 0.33
22 12 0.21
23 4 0.07
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.37
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGTTTAA
Found at i:64090725 original size:7 final size:7
Alignment explanation
Indices: 64090704--64090806 Score: 55
Period size: 7 Copynumber: 14.4 Consensus size: 7
64090694 TTAATTATCA
*
64090704 TTATAGT
1 TTATGGT
*
64090711 TTAGGGT
1 TTATGGT
64090718 TTATGGT
1 TTATGGT
64090725 TTA-GAGT
1 TTATG-GT
*
64090732 TTATAGT
1 TTATGGT
64090739 TTATGAGT
1 TTATG-GT
* **
64090747 TAATATT
1 TTATGGT
*
64090754 TTAAGGT
1 TTATGGT
*
64090761 TTATGGA
1 TTATGGT
*
64090768 TTATGATT
1 TTATG-GT
* *
64090776 TTAGGGA
1 TTATGGT
64090783 TTATGGT
1 TTATGGT
*
64090790 TTACGGT
1 TTATGGT
*
64090797 TTATGAT
1 TTATGGT
64090804 TTA
1 TTA
64090807 AGGGTTGGGG
Statistics
Matches: 68, Mismatches: 24, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
6 1 0.01
7 58 0.85
8 9 0.13
ACGTcount: A:0.25, C:0.01, G:0.23, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:64090726 original size:14 final size:14
Alignment explanation
Indices: 64090704--64090747 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
64090694 TTAATTATCA
*
64090704 TTATAGTTTAGGGT
1 TTATAGTTTAGAGT
*
64090718 TTATGGTTTAGAGT
1 TTATAGTTTAGAGT
64090732 TTATAGTTTATGAGT
1 TTATAGTTTA-GAGT
64090747 T
1 T
64090748 AATATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 21 0.81
15 5 0.19
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.52
Consensus pattern (14 bp):
TTATAGTTTAGAGT
Found at i:64090776 original size:22 final size:22
Alignment explanation
Indices: 64090710--64090788 Score: 58
Period size: 22 Copynumber: 3.6 Consensus size: 22
64090700 ATCATTATAG
* * *
64090710 TTTAGGGTTTATGGTTTA-GAG
1 TTTAAGGTTTATGGATTATGAT
64090731 TTTATA-GTTTAT-GAGTTAAT-AT
1 TTTA-AGGTTTATGGA-TT-ATGAT
64090753 TTTAAGGTTTATGGATTATGAT
1 TTTAAGGTTTATGGATTATGAT
* *
64090775 TTTAGGGATTATGG
1 TTTAAGGTTTATGG
64090789 TTTACGGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
20 1 0.02
21 15 0.33
22 28 0.61
23 2 0.04
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (22 bp):
TTTAAGGTTTATGGATTATGAT
Found at i:64090783 original size:15 final size:15
Alignment explanation
Indices: 64090760--64090810 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
64090750 TATTTTAAGG
*
64090760 TTTATGGATTATGAT
1 TTTAGGGATTATGAT
*
64090775 TTTAGGGATTATG-G
1 TTTAGGGATTATGAT
* *
64090789 TTTACGGTTTATGAT
1 TTTAGGGATTATGAT
*
64090804 TTAAGGG
1 TTTAGGG
64090811 TTGGGGTTTA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTAGGGATTATGAT
Found at i:64090846 original size:347 final size:346
Alignment explanation
Indices: 64090214--64090854 Score: 964
Period size: 347 Copynumber: 1.8 Consensus size: 346
64090204 GTTAAAAATG
* * * *
64090214 AAAATTTAAAATACTATTATTTAAAATAATTTTAAAGCTTTTTGGGTATGTGACTGGTTGTTTGT
1 AAAAATTAAAATACTATTATTTAAAATAATTCTAAAGCTTTTTGGGTATATGACTGATTGTTTGT
* * *
64090279 GAATTTATATATTAAATAAATTCTTATATAATCGTAAAAGAGATAATATTAATTTTAAAATATTG
66 CAATTTATATATTAAATAAATTCTTATATAATCGTAAAAAAGATAATAATAATTTTAAAATATTG
* * *
64090344 AATTAATTATCATTATGGCTTAGGATTTATGGTTTAGATCGTTTATGGTTTATGAGTTACTATTT
131 AATTAATTATCATTATAGCTTAGGATTTATGGTTTAGA-CGTTTATAGTTTATGAGTTAATATTT
* * *
64090409 TAAGGTTTATGGATTATGGGTTTAGGGATTATGGTTTATGGTTTAAGGGTTGGGTTTAAGGTTTA
195 TAAGGTTTATGGATTATGAGTTTAGGGATTATGGTTTACGGTTTAAGAGTTGGGTTTAAGGTTTA
* * * * *
64090474 GGGGTTAGGGTTAATATGATAGGGGTTAGGGGTTTAAGGGTTAAGGGGGTAAGGGTTTAGGGGAA
260 AGGGTTAGGATCAATAGGATAGGGGTTAAGGGTTTAAGGGTTAAGGGGGTAAGGGTTTAGGGGAA
64090539 TTAGTGTGAAAAATATATGTTA
325 TTAGTGTGAAAAATATATGTTA
64090561 AAAAATTAAAATACTATTATTTAAAATAATTCTAAAGCTTTTTGGGTATATGACTGATTGTTTGT
1 AAAAATTAAAATACTATTATTTAAAATAATTCTAAAGCTTTTTGGGTATATGACTGATTGTTTGT
*
64090626 CAATTTATATATTAAATAAATTCTTATATAATTGTAAAAAAAGATAATAATAATTTTAAAATATT
66 CAATTTATATATTAAATAAATTCTTATATAATCGT-AAAAAAGATAATAATAATTTTAAAATATT
* *
64090691 GAATTAATTATCATTATAGTTTAGGGTTTATGGTTTAGA-GTTTATAGTTTATGAGTTAATATTT
130 GAATTAATTATCATTATAGCTTAGGATTTATGGTTTAGACGTTTATAGTTTATGAGTTAATATTT
* * * **
64090755 TAAGGTTTATGGATTATGATTTTAGGGATTATGGTTTACGGTTTATGATTTAAGGG-TTGGGGTT
195 TAAGGTTTATGGATTATGAGTTTAGGGATTATGGTTTACGGTTTAAGAGTT--GGGTTTAAGGTT
* *
64090819 TAAGGTTTAAGGATCAAT-GGTTAGGGGTTAAGGGTT
258 TAAGGGTT-AGGATCAATAGGATAGGGGTTAAGGGTT
64090855 AAGAGATATG
Statistics
Matches: 262, Mismatches: 28, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
346 68 0.26
347 121 0.46
348 73 0.28
ACGTcount: A:0.33, C:0.03, G:0.22, T:0.43
Consensus pattern (346 bp):
AAAAATTAAAATACTATTATTTAAAATAATTCTAAAGCTTTTTGGGTATATGACTGATTGTTTGT
CAATTTATATATTAAATAAATTCTTATATAATCGTAAAAAAGATAATAATAATTTTAAAATATTG
AATTAATTATCATTATAGCTTAGGATTTATGGTTTAGACGTTTATAGTTTATGAGTTAATATTTT
AAGGTTTATGGATTATGAGTTTAGGGATTATGGTTTACGGTTTAAGAGTTGGGTTTAAGGTTTAA
GGGTTAGGATCAATAGGATAGGGGTTAAGGGTTTAAGGGTTAAGGGGGTAAGGGTTTAGGGGAAT
TAGTGTGAAAAATATATGTTA
Found at i:64090847 original size:7 final size:7
Alignment explanation
Indices: 64090804--64091000 Score: 69
Period size: 7 Copynumber: 27.1 Consensus size: 7
64090794 GGTTTATGAT
64090804 TTAAGGG
1 TTAAGGG
*
64090811 TT-GGGG
1 TTAAGGG
*
64090817 TTTAAGGT
1 -TTAAGGG
*
64090825 TTAAGGA
1 TTAAGGG
* *
64090832 TCAATGG
1 TTAAGGG
*
64090839 TTAGGGG
1 TTAAGGG
64090846 TTAAGGG
1 TTAAGGG
*
64090853 TTAAGAG
1 TTAAGGG
* *
64090860 ATATGGG
1 TTAAGGG
*
64090867 TTTTAGGG
1 -TTAAGGG
64090875 TTAAAGGG
1 TT-AAGGG
*
64090883 ATAAGGG
1 TTAAGGG
*
64090890 TTATGGGG
1 TTA-AGGG
64090898 TTAAGGG
1 TTAAGGG
*
64090905 TT-GGGG
1 TTAAGGG
64090911 TTTAA-GG
1 -TTAAGGG
*
64090918 TTTAGTGG
1 TTAAG-GG
64090926 TTATA-GG
1 TTA-AGGG
*
64090933 TTAGGGG
1 TTAAGGG
*
64090940 TTTTAGGG
1 -TTAAGGG
64090948 TTAAAGGG
1 TT-AAGGG
** *
64090956 ACATGGG
1 TTAAGGG
*
64090963 TTAGAGGA
1 TTA-AGGG
*
64090971 TTAGGGG
1 TTAAGGG
64090978 TTAAGGGG
1 TTAA-GGG
64090986 TTAAGGG
1 TTAAGGG
*
64090993 TTTAGGG
1 TTAAGGG
64091000 T
1 T
64091001 AATTAGTGTG
Statistics
Matches: 133, Mismatches: 42, Indels: 30
0.65 0.20 0.15
Matches are distributed among these distances:
6 9 0.07
7 81 0.61
8 42 0.32
9 1 0.01
ACGTcount: A:0.24, C:0.01, G:0.42, T:0.33
Consensus pattern (7 bp):
TTAAGGG
Found at i:64090890 original size:23 final size:23
Alignment explanation
Indices: 64090843--64090901 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
64090833 CAATGGTTAG
*
64090843 GGGTTA-AGGGTT-AAGAGATAT
1 GGGTTATAGGGTTAAAGAGATAA
* *
64090864 GGGTTTTAGGGTTAAAGGGATAA
1 GGGTTATAGGGTTAAAGAGATAA
*
64090887 GGGTTATGGGGTTAA
1 GGGTTATAGGGTTAA
64090902 GGGTTGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 5 0.16
22 6 0.19
23 20 0.65
ACGTcount: A:0.29, C:0.00, G:0.41, T:0.31
Consensus pattern (23 bp):
GGGTTATAGGGTTAAAGAGATAA
Found at i:64090993 original size:15 final size:15
Alignment explanation
Indices: 64090837--64090999 Score: 70
Period size: 15 Copynumber: 11.1 Consensus size: 15
64090827 AAGGATCAAT
*
64090837 GGTTAGGGGTTAA-G
1 GGTTAAGGGTTAAGG
* * *
64090851 GGTTAAGAGATATGG
1 GGTTAAGGGTTAAGG
* * *
64090866 GTTTTAGGGTTAAAG
1 GGTTAAGGGTTAAGG
* *
64090881 GGATAAGGGTTATGG
1 GGTTAAGGGTTAAGG
64090896 GGTTAAGGGTT--GG
1 GGTTAAGGGTTAAGG
* *
64090909 GGTTTAA-GGTTTAGT
1 GG-TTAAGGGTTAAGG
64090924 GGTTATA-GGTT-AGG
1 GGTTA-AGGGTTAAGG
* *
64090938 GGTTTTAGGGTTAAAG
1 GG-TTAAGGGTTAAGG
** *
64090954 GGACATGGGTT-AGAG
1 GGTTAAGGGTTAAG-G
* *
64090969 GATTAGGGGTTAAGG
1 GGTTAAGGGTTAAGG
*
64090984 GGTTAAGGGTTTAGG
1 GGTTAAGGGTTAAGG
64090999 G
1 G
64091000 TAATTAGTGT
Statistics
Matches: 107, Mismatches: 32, Indels: 19
0.68 0.20 0.12
Matches are distributed among these distances:
13 8 0.07
14 22 0.21
15 71 0.66
16 6 0.06
ACGTcount: A:0.24, C:0.01, G:0.44, T:0.32
Consensus pattern (15 bp):
GGTTAAGGGTTAAGG
Found at i:64091126 original size:17 final size:17
Alignment explanation
Indices: 64091100--64091147 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
64091090 AGTCTATATA
*
64091100 TTAAATAATTTCAAATT
1 TTAAAAAATTTCAAATT
*
64091117 TTAAAGAA-TTCAAATT
1 TTAAAAAATTTCAAATT
64091133 TTAAAAAAATTTCAA
1 TT-AAAAAATTTCAA
64091148 GAGTTCAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 10 0.37
17 12 0.44
18 5 0.19
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (17 bp):
TTAAAAAATTTCAAATT
Found at i:64091304 original size:18 final size:17
Alignment explanation
Indices: 64091267--64091301 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
64091257 TGTATAACTG
64091267 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
64091284 ATTG-TTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
64091300 AT
1 AT
64091302 ATTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:64091582 original size:115 final size:114
Alignment explanation
Indices: 64091391--64091601 Score: 275
Period size: 115 Copynumber: 1.8 Consensus size: 114
64091381 ATCATTATGT
*
64091391 TTTAAACAAAACGGCGCTGTTTTATTGGATTTGTTAGTGGCATTTTGTGTAAAACGCTGCAATAG
1 TTTAAACAAAACGACGCTGTTTTATTGGATTTGTTAGTGGCATTTTGTGTAAAACGCTGCAATAG
* * *
64091456 GTGCATTTTTAGCGGTGCAAGGGTATAAACGTCGCTAAAGGTTATTTTG
66 GTGCACTTTTAGCGGCGCAAGGGTAAAAACGTCGCTAAAGGTTATTTTG
*
64091505 TTTAAATCAAAACGACGACT-TTTTTTTGGATTT-TTAGTGGCATTTTAG-GTAAAACGCTGCAA
1 TTTAAA-CAAAACGACG-CTGTTTTATTGGATTTGTTAGTGGCATTTT-GTGTAAAACGCTGCAA
* * * * *
64091567 TAAGTTTCCCTTTTAGCTGCGCTAGGGTAAAAACG
63 T-AGGTGCACTTTTAGCGGCGCAAGGGTAAAAACG
64091602 CTGCAAACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
114 34 0.41
115 47 0.57
116 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (114 bp):
TTTAAACAAAACGACGCTGTTTTATTGGATTTGTTAGTGGCATTTTGTGTAAAACGCTGCAATAG
GTGCACTTTTAGCGGCGCAAGGGTAAAAACGTCGCTAAAGGTTATTTTG
Found at i:64094424 original size:47 final size:47
Alignment explanation
Indices: 64094361--64094512 Score: 286
Period size: 47 Copynumber: 3.2 Consensus size: 47
64094351 CCCTTCGGGA
* *
64094361 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
64094408 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
64094455 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
64094502 CTTATCACATA
1 CTTATCACATA
64094513 ATTAATACTA
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 103 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:64096894 original size:227 final size:227
Alignment explanation
Indices: 64096499--64096955 Score: 878
Period size: 227 Copynumber: 2.0 Consensus size: 227
64096489 CCGGCCACTA
*
64096499 GTCAAATTTTGGGTACTTTGACATGCAAACCCACAACTTTAATAGTTTAACATTTTAATCACTTG
1 GTCAAATTTTGGGTAATTTGACATGCAAACCCACAACTTTAATAGTTTAACATTTTAATCACTTG
64096564 GACATTTGCCTATCATATTTTTAAAGTTTCTCAAATATGCCCTTTTTAGCTAAATTTCACATCCA
66 GACATTTGCCTATCATATTTTTAAAGTTTCTCAAATATGCCCTTTTTAGCTAAATTTCACATCCA
64096629 AATGACAAAATTAAAGCATGAAATTTTCACACATACTTATTCACAAATAATAAGCATAGAATATA
131 AATGACAAAATTAAAGCATGAAATTTTCACACATACTTATTCACAAATAATAAGCATAGAATATA
*
64096694 ACAATTAATTATTTTTGTAACTCGGTTTTGTG
196 ACAATTAATTATTTTTGTAACTCGATTTTGTG
*
64096726 GTCAAATTTTGGGTAATTTGACATGCAAACCCACAACTTTAGTAGTTTAACATTTTAATCACTTG
1 GTCAAATTTTGGGTAATTTGACATGCAAACCCACAACTTTAATAGTTTAACATTTTAATCACTTG
64096791 GACATTTGCCTATCATATTTTTAAAGTTTCTCAAATATGCCCTTTTTAGCTAAATTTCACATCCA
66 GACATTTGCCTATCATATTTTTAAAGTTTCTCAAATATGCCCTTTTTAGCTAAATTTCACATCCA
64096856 AATGACAAAATTAAAGCATGAAATTTTCACACATACTTATTCACAAATAATAAGCATAGAATATA
131 AATGACAAAATTAAAGCATGAAATTTTCACACATACTTATTCACAAATAATAAGCATAGAATATA
*
64096921 ACAATTAATTATTTTTGTAACTCGATTTTTTG
196 ACAATTAATTATTTTTGTAACTCGATTTTGTG
64096953 GTC
1 GTC
64096956 CCGAAACCAC
Statistics
Matches: 226, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
227 226 1.00
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (227 bp):
GTCAAATTTTGGGTAATTTGACATGCAAACCCACAACTTTAATAGTTTAACATTTTAATCACTTG
GACATTTGCCTATCATATTTTTAAAGTTTCTCAAATATGCCCTTTTTAGCTAAATTTCACATCCA
AATGACAAAATTAAAGCATGAAATTTTCACACATACTTATTCACAAATAATAAGCATAGAATATA
ACAATTAATTATTTTTGTAACTCGATTTTGTG
Found at i:64098441 original size:40 final size:40
Alignment explanation
Indices: 64098391--64098546 Score: 249
Period size: 40 Copynumber: 3.9 Consensus size: 40
64098381 GAATACACAT
* *
64098391 CACCAGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAA
* * *
64098431 CATCGACACGAATACCCTTCGGGATTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAA
*
64098471 CACCGGCACGAATGCCCTTCGGGATTTTGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAA
*
64098511 CACCGGCACGAATGCCCTTCGGGATTTTGCCCGGAT
1 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGAT
64098547 CATCGTCGAG
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (40 bp):
CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAA
Found at i:64104226 original size:43 final size:43
Alignment explanation
Indices: 64104172--64104268 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 43
64104162 ACTTATATAC
* * *
64104172 CTTACATAATACATAAATATATATCATTTAATAACTTACAAAA
1 CTTACAAAATACATAAATATATATCATATAATAACTCACAAAA
* * * *
64104215 CTTACAAAATACATAAATGTATATCATATCATAACTCACATAC
1 CTTACAAAATACATAAATATATATCATATAATAACTCACAAAA
64104258 CTTACATAAAT
1 CTTACA-AAAT
64104269 GTATATCATA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 42 0.91
44 4 0.09
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.33
Consensus pattern (43 bp):
CTTACAAAATACATAAATATATATCATATAATAACTCACAAAA
Found at i:64104271 original size:36 final size:36
Alignment explanation
Indices: 64104224--64104362 Score: 260
Period size: 36 Copynumber: 3.9 Consensus size: 36
64104214 ACTTACAAAA
* *
64104224 TACATAAATGTATATCATATCATAACTCACATACCT
1 TACATAAATGTATATCATATCATAACTTACATATCT
64104260 TACATAAATGTATATCATATCATAACTTACATATCT
1 TACATAAATGTATATCATATCATAACTTACATATCT
64104296 TACATAAATGTATATCATATCATAACTTACATATCT
1 TACATAAATGTATATCATATCATAACTTACATATCT
64104332 TACATAAATGTATATCATATCATAACTTACA
1 TACATAAATGTATATCATATCATAACTTACA
64104363 AAACTTACTT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 101 1.00
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (36 bp):
TACATAAATGTATATCATATCATAACTTACATATCT
Found at i:64109522 original size:13 final size:14
Alignment explanation
Indices: 64109506--64109534 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
64109496 TTTTAAATAT
64109506 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
64109519 TTATAATGGTTTAA
1 TTATAATGGTTTAA
64109533 TT
1 TT
64109535 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:64109930 original size:21 final size:21
Alignment explanation
Indices: 64109896--64109935 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
64109886 AAATTGCTCA
**
64109896 ACTTAAAGCGGAGGCAGCATC
1 ACTTAAAGAAGAGGCAGCATC
*
64109917 ACTTAAAGAAGAGGTAGCA
1 ACTTAAAGAAGAGGCAGCA
64109936 GCGAGGGAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.15
Consensus pattern (21 bp):
ACTTAAAGAAGAGGCAGCATC
Found at i:64122835 original size:24 final size:23
Alignment explanation
Indices: 64122777--64122835 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
64122767 CCCATTACAT
* *
64122777 GGCTATTTGTGAGCTTCCTGATA
1 GGCTCTTTGTGAGCTTCCCGATA
*
64122800 GGCTCTTCGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
*
64122823 TGGTTCTTTGTGA
1 -GGCTCTTTGTGA
64122836 AGGCTCTTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 20 0.67
24 10 0.33
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (23 bp):
GGCTCTTTGTGAGCTTCCCGATA
Found at i:64131931 original size:40 final size:40
Alignment explanation
Indices: 64131876--64132099 Score: 351
Period size: 40 Copynumber: 5.6 Consensus size: 40
64131866 ATTTGAATAC
*
64131876 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
64131916 ATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
*
64131956 ATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
64131998 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
64132038 ATCCGGGCTAAGACCCGAA-GCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
64132077 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
64132100 ATTGAGCTTG
Statistics
Matches: 172, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 35 0.20
40 98 0.57
42 39 0.23
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:64132035 original size:82 final size:80
Alignment explanation
Indices: 64131876--64132099 Score: 351
Period size: 82 Copynumber: 2.8 Consensus size: 80
64131866 ATTTGAATAC
*
64131876 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGATAAGACCCGAAGGCATT
64131941 TGTGCGAATTGATAT
66 TGTGCGAATTGATAT
* *
64131956 ATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATATATCCGGGATAAGACCCGAAGGCA
*
64132021 TTTGTGCGAGTTGATAT
64 TTTGTGCGAATTGATAT
* * * *
64132038 ATCCGGGCTAAGACCCGAA-GCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGATAAGACCCGAAGGCA
64132100 ATTGAGCTTG
Statistics
Matches: 133, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
79 24 0.18
80 34 0.26
81 15 0.11
82 60 0.45
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGATAAGACCCGAAGGCATT
TGTGCGAATTGATAT
Found at i:64156431 original size:37 final size:37
Alignment explanation
Indices: 64156390--64156486 Score: 124
Period size: 38 Copynumber: 2.6 Consensus size: 37
64156380 CAGTTTATCT
* *
64156390 GTAGATTTTACTCATTTGAGCTCA-ATTCAATATAACA
1 GTAGAATTTGCTCATTTGAGCTCACA-TCAATATAACA
*
64156427 GTAGAATTTGCTCATTTGAGCTTCACATCAATATAATA
1 GTAGAATTTGCTCATTTGAGC-TCACATCAATATAACA
* *
64156465 ATAAAATTTGCTCATTTGAGCT
1 GTAGAATTTGCTCATTTGAGCT
64156487 ACTTTCAGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
37 20 0.38
38 32 0.60
39 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.38
Consensus pattern (37 bp):
GTAGAATTTGCTCATTTGAGCTCACATCAATATAACA
Found at i:64159343 original size:40 final size:40
Alignment explanation
Indices: 64159283--64159372 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
64159273 CGGTGTTACA
* *
64159283 GTATGGCTCGAAAGCGCATACGTTTCA-CTAGATTCAATAG
1 GTATGGCTCGAAAGCACATACATTTCAGC-AGATTCAATAG
* *
64159323 GTATGGTTCGAAAGCACATACATTTCAGCCGATTCAATAG
1 GTATGGCTCGAAAGCACATACATTTCAGCAGATTCAATAG
* *
64159363 ATATCGCTCG
1 GTATGGCTCG
64159373 TCTGAGTACT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 41 0.98
41 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (40 bp):
GTATGGCTCGAAAGCACATACATTTCAGCAGATTCAATAG
Found at i:64159430 original size:37 final size:36
Alignment explanation
Indices: 64159389--64159466 Score: 88
Period size: 36 Copynumber: 2.1 Consensus size: 36
64159379 TACTAGTTAG
64159389 TATATC-AGTAGATAAT-GCTCATTAGAACTTCATTCAA
1 TATATCGA-TAGAT-ATCGCTCATTA-AACTTCATTCAA
* * *
64159426 TATATCGATGGATATCGCTTATTAAACTTCATTCAG
1 TATATCGATAGATATCGCTCATTAAACTTCATTCAA
64159462 TATAT
1 TATAT
64159467 AATATAACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
36 18 0.50
37 17 0.47
38 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (36 bp):
TATATCGATAGATATCGCTCATTAAACTTCATTCAA
Found at i:64163531 original size:21 final size:22
Alignment explanation
Indices: 64163507--64163548 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
64163497 TTATTTATTT
*
64163507 AATAAAA-TAAAATAAAAGGTA
1 AATAAAATTAAAAAAAAAGGTA
64163528 AATAAAATTAAAAAAAAAGGT
1 AATAAAATTAAAAAAAAAGGT
64163549 TTTCTTCCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (22 bp):
AATAAAATTAAAAAAAAAGGTA
Found at i:64164398 original size:29 final size:29
Alignment explanation
Indices: 64164356--64164512 Score: 181
Period size: 29 Copynumber: 5.4 Consensus size: 29
64164346 CCATTGACTA
* * *
64164356 ATGAAAAAGAATAGCTTCGACTATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* *
64164385 ATGAAAAGAGATAGCTTCGGCTATGGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * *
64164414 AGGAAAAGGGATGGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * * *
64164443 ATGAAAAGGGAT-GGTGACGACCATCGAAT
1 ATGAAAAGGGATAGCT-TCGGCTATCGAAT
*
64164472 ATGAAAAGGGATAGCTTCGGCTATCGACT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
64164501 ATGAAAAGGGAT
1 ATGAAAAGGGAT
64164513 GGTGACTATC
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.02
29 101 0.96
30 2 0.02
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.22
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATCGAAT
Found at i:64164438 original size:58 final size:58
Alignment explanation
Indices: 64164366--64164541 Score: 176
Period size: 58 Copynumber: 3.0 Consensus size: 58
64164356 ATGAAAAAGA
* * * * *
64164366 ATAGCTTCGACTATCGAATATGAAAAGAGATAGCT-TCGGCTATGGAATAGGAAAAGGG
1 ATAGCTTCGGCTATCGAATATGAAAAGAGAT-GCTGACGACCATCGAATAGGAAAAGGG
* * * * *
64164424 ATGGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGG
1 ATAGCTTCGGCTATCGAATATGAAAAGAGATGCTGACGACCATCGAATAGGAAAAGGG
* * * * * *
64164482 ATAGCTTCGGCTATCGACTATGAAAAGGGATGGTGACTATCATC-AACTATGAAAAGGG
1 ATAGCTTCGGCTATCGAATATGAAAAGAGATGCTGACGACCATCGAA-TAGGAAAAGGG
64164540 AT
1 AT
64164542 GGTGACGACC
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
57 4 0.04
58 98 0.96
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (58 bp):
ATAGCTTCGGCTATCGAATATGAAAAGAGATGCTGACGACCATCGAATAGGAAAAGGG
Found at i:64164507 original size:87 final size:84
Alignment explanation
Indices: 64164373--64164570 Score: 247
Period size: 87 Copynumber: 2.3 Consensus size: 84
64164363 AGAATAGCTT
* * * *
64164373 CGACTATCGAATATGAAAAGAGATAGCTTCGGCTATGGAATAGGAAAAGGGATGGCTTCGGCTAT
1 CGACCATCGAATATGAAAAGGGATAGCTTCGGCTATCGAATAGGAAAAGGGATGG--T-GACTAT
64164438 CGAT-TATGAAAAGGGATGGTGA
63 C-ATATATGAAAAGGGATGGTGA
* *
64164460 CGACCATCGAATATGAAAAGGGATAGCTTCGGCTATCGACTATGAAAAGGGATGGTGACTATCAT
1 CGACCATCGAATATGAAAAGGGATAGCTTCGGCTATCGAATAGGAAAAGGGATGGTGACTATCAT
64164525 CAACTATGAAAAGGGATGGTGA
66 --A-TATGAAAAGGGATGGTGA
*
64164547 CGACCATC-AATTATGAACAGGGAT
1 CGACCATCGAA-TATGAAAAGGGAT
64164571 GGTGTCGACC
Statistics
Matches: 99, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
83 2 0.02
84 6 0.06
85 1 0.01
86 2 0.02
87 88 0.89
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.22
Consensus pattern (84 bp):
CGACCATCGAATATGAAAAGGGATAGCTTCGGCTATCGAATAGGAAAAGGGATGGTGACTATCAT
ATATGAAAAGGGATGGTGA
Found at i:64164612 original size:30 final size:29
Alignment explanation
Indices: 64164416--64164625 Score: 185
Period size: 29 Copynumber: 7.2 Consensus size: 29
64164406 TATGGAATAG
* * *
64164416 GAAAAGGGATGGCT-TCGGCTATCGATTAT
1 GAAAAGGGATGG-TGTCGACCATCAATTAT
*
64164445 GAAAAGGGATGGTGACGACCATCGAA-TAT
1 GAAAAGGGATGGTGTCGACCATC-AATTAT
* * * * *
64164474 GAAAAGGGATAGCT-TCGGCTATCGACTAT
1 GAAAAGGGAT-GGTGTCGACCATCAATTAT
* * * *
64164503 GAAAAGGGATGGTGACTATCATCAACTAT
1 GAAAAGGGATGGTGTCGACCATCAATTAT
*
64164532 GAAAAGGGATGGTGACGACCATCAATTAT
1 GAAAAGGGATGGTGTCGACCATCAATTAT
*
64164561 GAACAGGGATGGTGTCGACCATCAATTAAT
1 GAAAAGGGATGGTGTCGACCATCAATT-AT
* * *
64164591 GAAAAGGGATGATTTCAACCATCGAA-TAT
1 GAAAAGGGATGGTGTCGACCATC-AATTAT
64164620 GAAAAG
1 GAAAAG
64164626 AGACAGTTAC
Statistics
Matches: 149, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
28 4 0.03
29 118 0.79
30 25 0.17
31 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.22
Consensus pattern (29 bp):
GAAAAGGGATGGTGTCGACCATCAATTAT
Found at i:64165211 original size:11 final size:11
Alignment explanation
Indices: 64165195--64165224 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
64165185 AGTCGAATAA
*
64165195 ATTATTTTTTT
1 ATTATTTTATT
64165206 ATTATTTTATT
1 ATTATTTTATT
64165217 ATTATTTT
1 ATTATTTT
64165225 GGAGTCATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:64166479 original size:46 final size:45
Alignment explanation
Indices: 64166380--64166553 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 45
64166370 ATTATGGGAG
* *
64166380 CTAGTGTAAGACCATGTCCGGGACATGGCATCGGCATTGAGACGAGT
1 CTAGTGTAAGA-CATGTCTGGGACATGG-ATCGGCATCGAGACGAGT
*
64166427 GCTAGTGTAAGACATGTCTGGGACATGTG-TCGGCCTCGAGACGTTAGT
1 -CTAGTGTAAGACATGTCTGGGACATG-GATCGGCATCGAGACG--AGT
* * * * *
64166475 -TAGTGTAAGATATGTCTGGGACATGCATCGGC-TACGAAATGTGT
1 CTAGTGTAAGACATGTCTGGGACATGGATCGGCAT-CGAGACGAGT
*
64166519 C-AGTGTAAGACCATGT-TCGAGACATGGCATCGGCA
1 CTAGTGTAAGA-CATGTCT-GGGACATGG-ATCGGCA
64166554 CCTTACCCGA
Statistics
Matches: 105, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
44 12 0.11
45 12 0.11
46 52 0.50
47 14 0.13
48 15 0.14
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (45 bp):
CTAGTGTAAGACATGTCTGGGACATGGATCGGCATCGAGACGAGT
Found at i:64173654 original size:30 final size:30
Alignment explanation
Indices: 64173597--64173654 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
64173587 TTTTTGGGCC
* **
64173597 TAGGGGTAAAATGGTCATTTTGTCAAAGTG
1 TAGGGGCAAAATGGTCATTTTACCAAAGTG
64173627 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
64173655 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTG
Found at i:64178284 original size:26 final size:26
Alignment explanation
Indices: 64178254--64178305 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
64178244 ATGCCCATCG
64178254 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
64178280 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
64178306 ATTTGTACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:64182773 original size:12 final size:12
Alignment explanation
Indices: 64182756--64182786 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
64182746 AGTACTACCT
64182756 CGGCCTCAACCA
1 CGGCCTCAACCA
*
64182768 CGGCCTCGACCA
1 CGGCCTCAACCA
64182780 CGGCCTC
1 CGGCCTC
64182787 TTCCCCGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.52, G:0.23, T:0.10
Consensus pattern (12 bp):
CGGCCTCAACCA
Found at i:64185970 original size:26 final size:26
Alignment explanation
Indices: 64185934--64186015 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
64185924 TGAAATGCCC
*
64185934 ATCATGGAACATTTACCTAACCCTTT
1 ATCATGGAACATTTACCTAACCCATT
64185960 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64185986 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64186012 ATCA
1 ATCA
64186016 ATTTTAATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64191989 original size:21 final size:22
Alignment explanation
Indices: 64191933--64191989 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
64191923 TTTTCCTAGG
64191933 GTGTG-AATTGAATTAAATTGA
1 GTGTGAAATTGAATTAAATTGA
*
64191954 GTGTGAAA-TGGATTAAATTGA
1 GTGTGAAATTGAATTAAATTGA
* *
64191975 -TGTTAAATTCAATTA
1 GTGTGAAATTGAATTA
64191990 TATAGATTCG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 6 0.20
21 22 0.73
22 2 0.07
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.39
Consensus pattern (22 bp):
GTGTGAAATTGAATTAAATTGA
Found at i:64193246 original size:38 final size:38
Alignment explanation
Indices: 64193155--64193544 Score: 323
Period size: 38 Copynumber: 10.3 Consensus size: 38
64193145 CGAGGTATAA
* * * * *
64193155 AACCCGAACATAACACCAGCACGAAGCCTACGGGTCTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTT
* * * *
64193194 AGACTCAGATATAATACCAGCACTAGGCCTGCGGGATTT
1 A-ACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
*
64193233 AACCCGGATATAATATCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
64193271 AACCCGGATATAATACCAGCACGAAGCCTACGAGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* ** **
64193309 AACCCGGATATAATTCCAGCATAAAGCCTGCGAGTCTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCG-GGATTT
* * *
64193348 AAGCCCGGATACACAT--CA--A--ATATCATGC---ATATT
1 AA-CCCGGATATA-ATACCAGCACGA-AGCCTGCGGGAT-TT
* * * **
64193381 GACTCAGATATAATACCAGCA-TTAGTCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAG-CCTGCGGGATTT
*
64193419 AACCCGGATATAATATCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
64193457 AACCCGGATATAATACCAGCACGAAGCCTACGAGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* ** **
64193495 AACCCGGATATAATTCCAGCATAAAGCCTGCGAGTCTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCG-GGATTT
64193534 AAGCCCGGATA
1 AA-CCCGGATA
64193545 CACATCAAAT
Statistics
Matches: 282, Mismatches: 51, Indels: 35
0.77 0.14 0.10
Matches are distributed among these distances:
31 2 0.01
32 8 0.03
33 5 0.02
35 3 0.01
36 9 0.03
37 1 0.00
38 189 0.67
39 21 0.07
40 42 0.15
41 2 0.01
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:64193509 original size:186 final size:186
Alignment explanation
Indices: 64193195--64193566 Score: 726
Period size: 186 Copynumber: 2.0 Consensus size: 186
64193185 CGGGTCTTTA
64193195 GACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATATCAGCACGAAGC
1 GACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATATCAGCACGAAGC
64193260 CTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTACGAGATTTAACCCGGATATAATTC
66 CTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTACGAGATTTAACCCGGATATAATTC
64193325 CAGCATAAAGCCTGCGAGTCTTTAAGCCCGGATACACATCAAATATCATGCATATT
131 CAGCATAAAGCCTGCGAGTCTTTAAGCCCGGATACACATCAAATATCATGCATATT
* *
64193381 GACTCAGATATAATACCAGCATTAGTCCTGCGGGATTTAACCCGGATATAATATCAGCACGAAGC
1 GACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATATCAGCACGAAGC
64193446 CTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTACGAGATTTAACCCGGATATAATTC
66 CTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTACGAGATTTAACCCGGATATAATTC
64193511 CAGCATAAAGCCTGCGAGTCTTTAAGCCCGGATACACATCAAATATCATGCATATT
131 CAGCATAAAGCCTGCGAGTCTTTAAGCCCGGATACACATCAAATATCATGCATATT
64193567 TAATCATATA
Statistics
Matches: 184, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
186 184 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (186 bp):
GACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATATCAGCACGAAGC
CTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTACGAGATTTAACCCGGATATAATTC
CAGCATAAAGCCTGCGAGTCTTTAAGCCCGGATACACATCAAATATCATGCATATT
Done.