Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 196 of 276
Found at i:64902074 original size:47 final size:46
Alignment explanation
Indices: 64901956--64902081 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 46
64901946 GGATGGTTGA
* *
64901956 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GGATGCGAAT
*
64902004 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAA-T
64902047 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
64902082 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 30 0.43
48 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAAT
Found at i:64905105 original size:27 final size:27
Alignment explanation
Indices: 64905070--64905181 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
64905060 AGCATGGCTG
* *
64905070 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
64905096 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
64905124 CCAGA-ACAGATATATGTGGCAAAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
64905151 CCAGAT-CAGATAATTATGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
64905178 CCAG
1 CCAG
64905182 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.07
27 53 0.72
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:64905134 original size:54 final size:54
Alignment explanation
Indices: 64905070--64905181 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
64905060 AGCATGGCTG
* * * *
64905070 CCAGAACAGATA-ATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGAT-CAGATAATCATGGCAGAGCCA
* * *
64905124 CCAGAACAGATATATGTGGCAAAGCCACCAGATCAGATAATTATGGCATAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGATCAGATAATCATGGCAGAGCCA
64905178 CCAG
1 CCAG
64905182 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.68
55 16 0.32
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAAAGCCACCAGATCAGATAATCATGGCAGAGCCA
Found at i:64905347 original size:28 final size:28
Alignment explanation
Indices: 64905313--64905374 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
64905303 TTGCACCTAG
64905313 GGGTATAACAATAATTTTCCATACATAA
1 GGGTATAACAATAATTTTCCATACATAA
* * *
64905341 GGGTATAATAGTAATTTTCCATACATAG
1 GGGTATAACAATAATTTTCCATACATAA
64905369 GGGTAT
1 GGGTAT
64905375 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (28 bp):
GGGTATAACAATAATTTTCCATACATAA
Found at i:64905381 original size:28 final size:28
Alignment explanation
Indices: 64905310--64905385 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 28
64905300 ATTTTGCACC
*
64905310 TAGGGGTATAACAA-TAATTTTCCATACA
1 TAGGGGTAT-TCAAGTAATTTTCCATACA
* *
64905338 TAAGGGTA-TAATAGTAATTTTCCATACA
1 TAGGGGTATTCA-AGTAATTTTCCATACA
64905366 TAGGGGTATTCAAGTAATTT
1 TAGGGGTATTCAAGTAATTT
64905386 CAGTATTCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 1 0.03
27 1 0.03
28 36 0.90
29 2 0.05
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36
Consensus pattern (28 bp):
TAGGGGTATTCAAGTAATTTTCCATACA
Found at i:64921777 original size:79 final size:81
Alignment explanation
Indices: 64921641--64921823 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
64921631 TCGAATGATG
* *
64921641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
64921705 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
64921720 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
64921782 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
64921800 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
64921824 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:64921832 original size:40 final size:39
Alignment explanation
Indices: 64921642--64921825 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
64921632 CGAATGATGT
* * * *
64921642 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
64921682 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
64921722 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64921760 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64921801 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64921826 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64921847 original size:79 final size:79
Alignment explanation
Indices: 64921694--64921848 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
64921684 GGACTAAGAT
* **
64921694 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
64921759 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
64921773 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
64921836 TACATCC-GGTTAA
63 TAAATCCGGGTTAA
64921849 ATTCTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:64931769 original size:30 final size:30
Alignment explanation
Indices: 64931735--64931831 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
64931725 TAAACTAAAA
64931735 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
64931765 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
64931795 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
64931825 TGAGCTA
1 TGAGCTA
64931832 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:64938053 original size:19 final size:19
Alignment explanation
Indices: 64937992--64938055 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
64937982 CAAATGAGAG
64937992 AAAAAGAAAAGAGCGAAAAT-A
1 AAAAAGAAAAGA---AAAATCA
* *
64938013 CAAAAGAAAAGAAAAATGA
1 AAAAAGAAAAGAAAAATCA
*
64938032 AAAAAGAAAAGAAAATTCA
1 AAAAAGAAAAGAAAAATCA
64938051 AAAAA
1 AAAAA
64938056 AGAGAATGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 5 0.13
19 22 0.58
21 11 0.29
ACGTcount: A:0.75, C:0.05, G:0.14, T:0.06
Consensus pattern (19 bp):
AAAAAGAAAAGAAAAATCA
Found at i:64941849 original size:22 final size:22
Alignment explanation
Indices: 64941821--64941864 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
64941811 TTTTGAACCA
64941821 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
64941843 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
64941865 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:64949452 original size:39 final size:39
Alignment explanation
Indices: 64949408--64949484 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
64949398 TTGGATTCAG
64949408 CTCATTCCCAGTTCCACAGCTCGGGACCAGCTCATTATT
1 CTCATTCCCAGTTCCACAGCTCGGGACCAGCTCATTATT
*
64949447 CTCATTCCCAGTTCCACAGCTCGGGACTAGCTCATTAT
1 CTCATTCCCAGTTCCACAGCTCGGGACCAGCTCATTAT
64949485 CAGCTCACGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.35, G:0.16, T:0.29
Consensus pattern (39 bp):
CTCATTCCCAGTTCCACAGCTCGGGACCAGCTCATTATT
Found at i:64958886 original size:31 final size:32
Alignment explanation
Indices: 64958846--64958905 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
64958836 AACTGAATGT
64958846 TGAAGAGTCTT-CCAATGTGAACA-AGGTGAGA
1 TGAAGAGTCTTGCC-ATGTGAACATAGGTGAGA
*
64958877 TGAATAGTCTTGCCATGTGAACATAGGTG
1 TGAAGAGTCTTGCCATGTGAACATAGGTG
64958906 TGAAACGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 19 0.73
32 7 0.27
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (32 bp):
TGAAGAGTCTTGCCATGTGAACATAGGTGAGA
Found at i:64962538 original size:22 final size:22
Alignment explanation
Indices: 64962508--64962551 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
64962498 TTTGGTATTT
64962508 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
64962530 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
64962552 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:64966107 original size:9 final size:10
Alignment explanation
Indices: 64966100--64966162 Score: 58
Period size: 11 Copynumber: 6.0 Consensus size: 10
64966090 AAGAGAAAAC
64966100 AAAGAAAAGA
1 AAAGAAAAGA
64966110 AAAGAAAAAGAA
1 AAAG-AAAAG-A
64966122 AAAGCAAAAGA
1 AAAG-AAAAGA
*
64966133 AGA-AAAAGA
1 AAAGAAAAGA
64966142 AAATGAAATA-A
1 AAA-GAAA-AGA
64966153 AAAGAAAAGA
1 AAAGAAAAGA
64966163 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
9 9 0.20
10 9 0.20
11 15 0.34
12 11 0.25
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.03
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:64966110 original size:5 final size:5
Alignment explanation
Indices: 64966100--64966162 Score: 58
Period size: 5 Copynumber: 12.0 Consensus size: 5
64966090 AAGAGAAAAC
*
64966100 AAAGA AAAGA AAAGAA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA
1 AAAGA AAAGA AAAG-A AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA
64966148 AATA-A AAAGA AAAGA
1 AA-AGA AAAGA AAAGA
64966163 GAGGCAAGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
4 4 0.08
5 25 0.50
6 20 0.40
7 1 0.02
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:64966130 original size:12 final size:11
Alignment explanation
Indices: 64966100--64966160 Score: 58
Period size: 12 Copynumber: 5.7 Consensus size: 11
64966090 AAGAGAAAAC
64966100 AAAG-AAAAGA
1 AAAGAAAAAGA
64966110 AAAGAAAAAGAA
1 AAAGAAAAAG-A
*
64966122 AAAGCAAAAG-
1 AAAGAAAAAGA
64966132 -AAGAAAAAGA
1 AAAGAAAAAGA
*
64966142 AAATGAAATA-A
1 AAA-GAAAAAGA
64966153 AAAGAAAA
1 AAAGAAAA
64966161 GAGAGGCAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
9 8 0.19
10 8 0.19
11 11 0.26
12 15 0.36
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.03
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:64966137 original size:15 final size:14
Alignment explanation
Indices: 64966109--64966162 Score: 58
Period size: 16 Copynumber: 3.8 Consensus size: 14
64966099 CAAAGAAAAG
64966109 AAAAG-AAA-AAGA
1 AAAAGAAAAGAAGA
64966121 AAAAGCAAAAGAAGA
1 AAAAG-AAAAGAAGA
*
64966136 AAAAGAAAATGAAATA
1 AAAAGAAAA-G-AAGA
64966152 AAAAGAAAAGA
1 AAAAGAAAAGA
64966163 GAGGCAAGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
12 5 0.14
14 8 0.22
15 11 0.31
16 12 0.33
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.04
Consensus pattern (14 bp):
AAAAGAAAAGAAGA
Found at i:64966160 original size:6 final size:6
Alignment explanation
Indices: 64966100--64966149 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
64966090 AAGAGAAAAC
*
64966100 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAAA AGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG--AA A-AAGAA AAAGAA AAAGAA
64966149 A
1 A
64966150 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:64966162 original size:21 final size:21
Alignment explanation
Indices: 64966100--64966160 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 21
64966090 AAGAGAAAAC
64966100 AAAGAAAAGAAAAGAAAAAGAA
1 AAAGAAAA-AAAAGAAAAAGAA
* *
64966122 AAAGCAAAAGAAGAAAAAGAA
1 AAAGAAAAAAAAGAAAAAGAA
*
64966143 AATGAAATAAAAAGAAAA
1 AAAGAAA-AAAAAGAAAA
64966161 GAGAGGCAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.03
Consensus pattern (21 bp):
AAAGAAAAAAAAGAAAAAGAA
Found at i:64966294 original size:30 final size:31
Alignment explanation
Indices: 64966231--64966301 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 31
64966221 TTTGAAAAGC
* *
64966231 AAAAAGAAA-ATGAGATTGAAAAAGAGAACG
1 AAAAAGAAATTTGAGAGTGAAAAAGAGAACG
*
64966261 -AAAAGAAATTTGAGAGTGAAAAAGA-AGATG
1 AAAAAGAAATTTGAGAGTGAAAAAGAGA-ACG
64966291 AAAAAGAAATT
1 AAAAAGAAATT
64966302 GAAACAAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 9 0.26
30 16 0.46
31 10 0.29
ACGTcount: A:0.62, C:0.01, G:0.23, T:0.14
Consensus pattern (31 bp):
AAAAAGAAATTTGAGAGTGAAAAAGAGAACG
Found at i:64968446 original size:30 final size:31
Alignment explanation
Indices: 64968412--64968508 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
64968402 AGCTCAGTCC
*
64968412 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
64968442 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
64968472 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
64968502 TAGCTCA
1 TAGCTCA
64968509 TTTTAATTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:64973630 original size:46 final size:46
Alignment explanation
Indices: 64973563--64973827 Score: 231
Period size: 46 Copynumber: 5.7 Consensus size: 46
64973553 AAGCCGCCCC
*
64973563 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
64973609 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * * *
64973657 TCA-CGAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
64973702 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * * *
64973750 TCA-CGAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
64973795 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
64973828 ATGCTCAACC
Statistics
Matches: 171, Mismatches: 30, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
42 4 0.02
43 6 0.04
44 4 0.02
45 2 0.01
46 84 0.49
47 52 0.30
48 4 0.02
49 4 0.02
50 6 0.04
51 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:64973676 original size:93 final size:93
Alignment explanation
Indices: 64973568--64973831 Score: 474
Period size: 93 Copynumber: 2.8 Consensus size: 93
64973558 GCCCCTAAGT
* * * * * *
64973568 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
64973633 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
64973661 GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
64973726 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
64973754 GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
64973819 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64973832 TCAACCATCC
Statistics
Matches: 165, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 165 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64973686 original size:47 final size:47
Alignment explanation
Indices: 64973614--64973779 Score: 200
Period size: 47 Copynumber: 3.6 Consensus size: 47
64973604 ATCCATAAGT
*
64973614 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTCAC
* * *
64973661 GAACTCGGACTCAACTCAACAAGTTC--A-GAC-A-TTCGCATC-CATAGGT
1 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACATCTC--A--C
*
64973707 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTCAC
64973754 GAACTCGGACTCAACTCAACAAGTTC
1 GAACTCGGACTCAACTCAACAAGTTC
64973780 AGACATTCGC
Statistics
Matches: 99, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 3 0.03
45 1 0.01
46 25 0.25
47 50 0.51
48 1 0.01
49 3 0.03
50 5 0.05
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64974286 original size:30 final size:30
Alignment explanation
Indices: 64974252--64974308 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
64974242 ATTTAATACG
64974252 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
64974282 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
64974309 TTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:64974922 original size:109 final size:109
Alignment explanation
Indices: 64974731--64974943 Score: 408
Period size: 109 Copynumber: 2.0 Consensus size: 109
64974721 AAGATGAGCA
64974731 TATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTTGAAATTTCGGCCTAATGA
1 TATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTTGAAATTTCGGCCTAATGA
64974796 AGAAGATGGACAAAAATTGGCTTTTAATTTTCTTTTTAACTTAC
66 AGAAGATGGACAAAAATTGGCTTTTAATTTTCTTTTTAACTTAC
*
64974840 TATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTTGAAATTTCGGCCTACTGA
1 TATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTTGAAATTTCGGCCTAATGA
*
64974905 AGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAA
66 AGAAGATGGACAAAAATTGGCTTTTAATTTTCTTTTTAA
64974944 TTCATTTTAA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 102 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (109 bp):
TATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTTGAAATTTCGGCCTAATGA
AGAAGATGGACAAAAATTGGCTTTTAATTTTCTTTTTAACTTAC
Found at i:64977321 original size:49 final size:49
Alignment explanation
Indices: 64977248--64977535 Score: 360
Period size: 49 Copynumber: 5.8 Consensus size: 49
64977238 TAGCTGAAGC
*
64977248 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
64977297 AATCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGATCACAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * **
64977348 TTTCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
64977397 AATCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGATCACAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * **
64977448 TTTCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
64977497 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
64977536 CGTGACCTCA
Statistics
Matches: 197, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
49 115 0.58
50 4 0.02
51 78 0.40
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:64977370 original size:100 final size:100
Alignment explanation
Indices: 64977253--64977549 Score: 549
Period size: 100 Copynumber: 3.0 Consensus size: 100
64977243 GAAGCTATCT
*
64977253 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
64977318 TGCATTTAGTACTACACACGTGATCACAATTTTCG
66 TGCATTTAGTACTACACACGTGATCACAATTTTCG
64977353 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
64977418 TGCATTTAGTACTACACACGTGATCACAATTTTCG
66 TGCATTTAGTACTACACACGTGATCACAATTTTCG
*
64977453 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
*
64977518 TGCACTTAGTACTACACACGTGACCTCACAAT
66 TGCATTTAGTACTACACACGTGA--TCACAAT
64977550 AGTTCATTTG
Statistics
Matches: 192, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
100 185 0.96
102 7 0.04
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (100 bp):
GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
TGCATTTAGTACTACACACGTGATCACAATTTTCG
Found at i:64977876 original size:14 final size:16
Alignment explanation
Indices: 64977844--64977881 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
64977834 ATTTACATAA
*
64977844 CATATATCACATATTT
1 CATATATCACATATGT
64977860 CATATATCAC-T-TGT
1 CATATATCACATATGT
64977874 CATATATC
1 CATATATC
64977882 TTCATTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.48
15 1 0.05
16 10 0.48
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:64981441 original size:24 final size:25
Alignment explanation
Indices: 64981384--64981464 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
64981374 AGGAAGTGCT
*
64981384 AAAAGCGCTTTGCCCCAGTT-TATCA
1 AAAAG-GCTTTGCCCCAGTTATATGA
64981409 AAAAGGGCTTTGCCCCAGTTAT-TGA
1 AAAA-GGCTTTGCCCCAGTTATATGA
**
64981434 AAAAGGCTAGGCCTCCAGTTATATGA
1 AAAAGGCTTTGCC-CCAGTTATATGA
*
64981460 TAAAG
1 AAAAG
64981465 CAGCTATGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
24 7 0.15
25 32 0.67
26 9 0.19
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGCTTTGCCCCAGTTATATGA
Found at i:64991817 original size:112 final size:113
Alignment explanation
Indices: 64991620--64991846 Score: 429
Period size: 112 Copynumber: 2.0 Consensus size: 113
64991610 GAGAGAGTTT
*
64991620 GAATCGGTTGAATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTTAGGGATTTGAAGGAGGGA
1 GAATCGGTTGAATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTTAGGGATTTGAAGAAGGGA
*
64991685 TTAGAGTTGGCCGAATAGAGGGGATTAGGGAGGAGAAATCGGCTT-GG
66 TTAGAGTTGGCCAAATAGAGGGGATTAGGGAGGAGAAATCGGCTTAGG
64991732 GAATCGGTTGAATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTTAGGGATTTGAAGAAGGGA
1 GAATCGGTTGAATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTTAGGGATTTGAAGAAGGGA
64991797 TTAGAGTTGGCCAAATAGAGGGGATTAGGGAGGAGAAATCGGCTTAGG
66 TTAGAGTTGGCCAAATAGAGGGGATTAGGGAGGAGAAATCGGCTTAGG
64991845 GA
1 GA
64991847 TTTTAAGGGT
Statistics
Matches: 112, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
112 108 0.96
113 4 0.04
ACGTcount: A:0.32, C:0.05, G:0.39, T:0.24
Consensus pattern (113 bp):
GAATCGGTTGAATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTTAGGGATTTGAAGAAGGGA
TTAGAGTTGGCCAAATAGAGGGGATTAGGGAGGAGAAATCGGCTTAGG
Found at i:64993150 original size:10 final size:10
Alignment explanation
Indices: 64993135--64993173 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
64993125 TGCTTTTGTA
64993135 CATGATATGC
1 CATGATATGC
64993145 CATGATATGC
1 CATGATATGC
64993155 ACATGATATGC
1 -CATGATATGC
64993166 CATGATAT
1 CATGATAT
64993174 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:64993159 original size:21 final size:21
Alignment explanation
Indices: 64993134--64993173 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
64993124 CTGCTTTTGT
64993134 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
64993155 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
64993174 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:64993277 original size:24 final size:25
Alignment explanation
Indices: 64993219--64993277 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 25
64993209 GAAGAAGTGA
*
64993219 TAAAAGA-GCTTTGCCCCAATTTAT
1 TAAAAGAGGCTTTGCCCCAAGTTAT
* *
64993243 CAAAA-AGGGCTTTG-CCCTAGTTAT
1 TAAAAGA-GGCTTTGCCCCAAGTTAT
64993267 TAAAAGAGGCT
1 TAAAAGAGGCT
64993278 AGGCCTCCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
23 1 0.04
24 20 0.71
25 7 0.25
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (25 bp):
TAAAAGAGGCTTTGCCCCAAGTTAT
Found at i:64993556 original size:29 final size:30
Alignment explanation
Indices: 64993484--64993561 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
64993474 CAATTACAGT
* * *
64993484 AAAGGCTTCGGCCCAGTGATATGATTTATG
1 AAAGGCTTCGGCCCAGTAATATGATTAACG
*
64993514 AAGAGGCTTTGGCCCAGTAAT-TG-TTAAACG
1 AA-AGGCTTCGGCCCAGTAATATGATT-AACG
64993544 AAAGGCTTCGGCCCAGTA
1 AAAGGCTTCGGCCCAGTA
64993562 TAAATTGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 17 0.41
30 8 0.20
31 16 0.39
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGATTAACG
Found at i:64995883 original size:18 final size:18
Alignment explanation
Indices: 64995860--64995894 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
64995850 ATTTCTCCCA
*
64995860 CGATTCCCTTTTGTTTCC
1 CGATTCCCTTTTCTTTCC
64995878 CGATTCCCTTTTCTTTC
1 CGATTCCCTTTTCTTTC
64995895 TCAGCCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.34, G:0.09, T:0.51
Consensus pattern (18 bp):
CGATTCCCTTTTCTTTCC
Found at i:64998289 original size:8 final size:8
Alignment explanation
Indices: 64998276--64998302 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
64998266 TGTTAAATTA
64998276 TTTTTTAT
1 TTTTTTAT
64998284 TTTTTTAT
1 TTTTTTAT
64998292 TTTTTTAT
1 TTTTTTAT
64998300 TTT
1 TTT
64998303 AATAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTAT
Found at i:65001484 original size:13 final size:13
Alignment explanation
Indices: 65001466--65001491 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65001456 AGTAACTTAC
65001466 ATAACTTACATAA
1 ATAACTTACATAA
65001479 ATAACTTACATAA
1 ATAACTTACATAA
65001492 TACATCAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAACTTACATAA
Found at i:65012312 original size:28 final size:28
Alignment explanation
Indices: 65012246--65012373 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
65012236 CATGAGATTG
* * **
65012246 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
65012275 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
65012303 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
65012332 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
65012360 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
65012374 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:65012335 original size:57 final size:57
Alignment explanation
Indices: 65012246--65012373 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
65012236 CATGAGATTG
*
65012246 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
65012303 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
65012360 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
65012374 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:65014845 original size:19 final size:19
Alignment explanation
Indices: 65014821--65014860 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
65014811 CTTGAGCCAT
*
65014821 TGTGGGCCTCTATGGGC-CG
1 TGTGGGCC-CAATGGGCTCG
65014840 TGTGGGCCCAATGGGCTCG
1 TGTGGGCCCAATGGGCTCG
65014859 TG
1 TG
65014861 GGCCCACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.07, C:0.25, G:0.42, T:0.25
Consensus pattern (19 bp):
TGTGGGCCCAATGGGCTCG
Found at i:65015563 original size:28 final size:31
Alignment explanation
Indices: 65015501--65015574 Score: 109
Period size: 33 Copynumber: 2.4 Consensus size: 31
65015491 CATTATGCAC
65015501 TGTACTGATACTGAATAGGGCTTTGGTCCAGAT
1 TGTACTGATACTGAATAGGGCTTT-GT-CAGAT
65015534 TGTACTGATACTGAATAGGGC-TT-T-AGAT
1 TGTACTGATACTGAATAGGGCTTTGTCAGAT
65015562 TGTACTGATACTG
1 TGTACTGATACTG
65015575 TGTTGATCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
28 17 0.41
30 1 0.02
32 2 0.05
33 21 0.51
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.35
Consensus pattern (31 bp):
TGTACTGATACTGAATAGGGCTTTGTCAGAT
Found at i:65018567 original size:39 final size:39
Alignment explanation
Indices: 65018513--65018720 Score: 292
Period size: 39 Copynumber: 5.3 Consensus size: 39
65018503 TAATGGAGAA
* *
65018513 TTATATCCGGGCTAAGTCCCAAAGGAATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
65018552 TTATATCTGGGCTAAGTCCCGAAGGCATTCGCGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
65018591 TTATATCCGGGCTAAGTCCCGAAGGCAGTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
65018630 TTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
65018669 TTATATCCGGGCTAAAGTCCCGTACGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
65018708 TTATATCCGGGCT
1 TTATATCCGGGCT
65018721 TAAAGTCTCG
Statistics
Matches: 152, Mismatches: 16, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
39 142 0.93
40 10 0.07
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:65018738 original size:40 final size:39
Alignment explanation
Indices: 65018513--65018747 Score: 217
Period size: 39 Copynumber: 6.0 Consensus size: 39
65018503 TAATGGAGAA
* * * *
65018513 TTATATCCGGGCT-AAGTCCCAAAGGAATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGAACG-CTTTGTGCTGGTG
* * * * *
65018552 TTATATCTGGGCT-AAGTCCCGAAGGCATTCGCGTTGGTG
1 TTATATCCGGGCTAAAGTCCCGAACGC-TTTGTGCTGGTG
* * *
65018591 TTATATCCGGGCT-AAGTCCCGAAGGCAGTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGAACGC-TTTGTGCTGGTG
* *
65018630 TTATATCCGGGCT-AAGCCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGAACGC-TTTGTGCTGGTG
* *
65018669 TTATATCCGGGCTAAAGTCCCGTACGCTTTGTGCTGGTA
1 TTATATCCGGGCTAAAGTCCCGAACGCTTTGTGCTGGTG
* * * *
65018708 TTATATCCGGGCTTAAAGTCTCGCATGCTTTGTGGTGGTG
1 TTATATCCGGGC-TAAAGTCCCGAACGCTTTGTGCTGGTG
65018748 ATTGGATTTG
Statistics
Matches: 172, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
39 140 0.81
40 32 0.19
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAAGTCCCGAACGCTTTGTGCTGGTG
Found at i:65023370 original size:40 final size:39
Alignment explanation
Indices: 65023262--65023378 Score: 112
Period size: 40 Copynumber: 3.0 Consensus size: 39
65023252 ATAATGGAGA
* * *
65023262 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGTTGGT
1 ATTATATCCGGGCTAAAGTCCCGAACGC-TTTGTGCTGGT
* * *
65023301 GTTATAT-CTGGCTAAAGTCCCGTACGCTTTGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGAACGCTTTGTGCTGGT
* * * *
65023339 ATTATATCCGGGCTTAAAGTCTCGCATGCTTTGTGGTGGT
1 ATTATATCCGGGC-TAAAGTCCCGAACGCTTTGTGCTGGT
65023379 GATTGGATTT
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
38 20 0.32
39 21 0.33
40 22 0.35
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.35
Consensus pattern (39 bp):
ATTATATCCGGGCTAAAGTCCCGAACGCTTTGTGCTGGT
Found at i:65030302 original size:46 final size:46
Alignment explanation
Indices: 65030235--65030355 Score: 224
Period size: 46 Copynumber: 2.6 Consensus size: 46
65030225 TACATCTCAC
*
65030235 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
65030281 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
*
65030327 GAACTCGGTCTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
65030356 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:65035372 original size:30 final size:30
Alignment explanation
Indices: 65035330--65035423 Score: 145
Period size: 30 Copynumber: 3.2 Consensus size: 30
65035320 CAAGTAGCCG
65035330 AAGCTAG-TTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
* * *
65035359 AATCTAGTTTAAATCGCACACTTTGTGCTA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
*
65035389 AAGCTAGTTTAAATCCCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
65035419 AAGCT
1 AAGCT
65035424 TCTGATTCAT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
29 6 0.11
30 51 0.89
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:65047448 original size:42 final size:44
Alignment explanation
Indices: 65047401--65047499 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 44
65047391 ATGTGAGTTA
*
65047401 TCATGTAAGACCAC-ATCAGGGACATTCGCATCG-TATTTAATT
1 TCATGTAAGACCACTATCAGGGACAGTCGCATCGATATTTAATT
* * * * *
65047443 TCATGTAAGACC-CTGTCTGGGATAGTGGCATCGATATTTGATT
1 TCATGTAAGACCACTATCAGGGACAGTCGCATCGATATTTAATT
*
65047486 ACATGTAAGACCAC
1 TCATGTAAGACCAC
65047500 GTTTGGGACG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 26 0.55
43 19 0.40
44 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (44 bp):
TCATGTAAGACCACTATCAGGGACAGTCGCATCGATATTTAATT
Found at i:65047515 original size:43 final size:42
Alignment explanation
Indices: 65047402--65047516 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
65047392 TGTGAGTTAT
* * * * *
65047402 CATGTAAGACCACATCAGGGACATTCGCATCGTATTTAATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTAATTA
* *
65047444 CATGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTAATTA
*
65047487 CATGTAAGACCACGTTTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
65047517 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 32 0.54
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTAATTA
Found at i:65060934 original size:24 final size:24
Alignment explanation
Indices: 65060907--65060952 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
65060897 ACCTTCTTGG
*
65060907 GAAGTTCACAAAGAACTATATCAA
1 GAAGTTCACAAAGAACCATATCAA
65060931 GAAGTTCACAAAGAACCATATC
1 GAAGTTCACAAAGAACCATATC
65060953 GGGGAGCTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.48, C:0.20, G:0.13, T:0.20
Consensus pattern (24 bp):
GAAGTTCACAAAGAACCATATCAA
Found at i:65064934 original size:37 final size:37
Alignment explanation
Indices: 65064884--65064959 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
65064874 TAATAATAGA
65064884 GAAACAATAGAGAGGACCTATGAGTACTTACCGATCC
1 GAAACAATAGAGAGGACCTATGAGTACTTACCGATCC
*
65064921 GAAACAATGGAGAGGACCTATGAGTACTTACCGATCC
1 GAAACAATAGAGAGGACCTATGAGTACTTACCGATCC
65064958 GA
1 GA
65064960 CAGAACCTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (37 bp):
GAAACAATAGAGAGGACCTATGAGTACTTACCGATCC
Found at i:65066657 original size:39 final size:39
Alignment explanation
Indices: 65066593--65066721 Score: 111
Period size: 39 Copynumber: 3.3 Consensus size: 39
65066583 GGTCTTTAAC
* *** *
65066593 CCGGATATTTTTCCAGCACGCAGCCTGTGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCAAGT
* * **
65066632 CTC-GATATATTTCTAGCATATAGCCTGCGGATCTCGTGT
1 C-CGGATATATTTCCAGCATATAGCCTGCGGACCTCAAGT
* *
65066671 CCGGATATTTTTCCAGCATAT-GTCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAG-CCTGCGGACCTCAAGT
*
65066710 TCGGATAT-TTTC
1 CCGGATATATTTC
65066722 AATCTCATAC
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
38 6 0.08
39 66 0.90
40 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.33
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCAAGT
Found at i:65069849 original size:129 final size:129
Alignment explanation
Indices: 65069619--65069873 Score: 458
Period size: 129 Copynumber: 2.0 Consensus size: 129
65069609 TAATGCTTGA
* *
65069619 TTGAAAACTATTGTTGTAAGCAAATTCAATCAAAGGTAAATACTGTTCCATTGAACCGCTAAACT
1 TTGAAAACTATTGTTGTAAGCAAATTCAATCAAAGGTAAATACCGTTCCATTGAACCACTAAACT
65069684 AAAGGATGCAACATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGATTGACCATCGGT
66 AAAGGATGCAACATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGATTGACCATCGGT
*
65069748 TTGAAAACTATTGTTGTAAGCGAATTCAATCAAAGGTAAATACCGTTCCCA-TGAACCACTAAAC
1 TTGAAAACTATTGTTGTAAGCAAATTCAATCAAAGGTAAATACCGTT-CCATTGAACCACTAAAC
*
65069812 TCAAGGATGCAACATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGATTGACCATC
65 TAAAGGATGCAACATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGATTGACCATC
65069874 AGTCTGGGGA
Statistics
Matches: 121, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
129 118 0.98
130 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (129 bp):
TTGAAAACTATTGTTGTAAGCAAATTCAATCAAAGGTAAATACCGTTCCATTGAACCACTAAACT
AAAGGATGCAACATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGATTGACCATCGGT
Found at i:65074881 original size:39 final size:40
Alignment explanation
Indices: 65074767--65074889 Score: 162
Period size: 39 Copynumber: 3.1 Consensus size: 40
65074757 TTTAACCCGA
**
65074767 ATATTTTTCCAGCACGTAGCCTGCGGACCTCATGT-CTGG
1 ATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCTGG
* * * *
65074806 ATATATTTCTAGCATATAGCCTGTGGATCTCATGTCCT-G
1 ATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCTGG
65074845 ATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC-GG
1 ATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCTGG
*
65074884 AGATTT
1 ATATTT
65074890 GATCATAACA
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
39 69 0.97
40 2 0.03
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.34
Consensus pattern (40 bp):
ATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCTGG
Found at i:65086662 original size:56 final size:56
Alignment explanation
Indices: 65086563--65086757 Score: 286
Period size: 56 Copynumber: 3.5 Consensus size: 56
65086553 TCTTATATAG
* *
65086563 GGTCTTCCTCGTACACATATATCA-AATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
** * * *
65086618 GGTCTTACTCATACACATATATCGGAATCACATATCGATACCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
*
65086674 GGTCTTACTCGCACACATAT-TCCAGAATCACATATCAATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATAT-CAGAATCACATATCGATGCCAACGTATTAAACGT
*
65086730 GGTCTTACTTGCACACATATATCAGAAT
1 GGTCTTACTCGCACACATATATCAGAAT
65086758 TAGATGTCAC
Statistics
Matches: 125, Mismatches: 12, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
55 22 0.18
56 102 0.82
57 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:65092313 original size:28 final size:28
Alignment explanation
Indices: 65092245--65092508 Score: 388
Period size: 28 Copynumber: 9.4 Consensus size: 28
65092235 CATGAGATTG
* * *
65092245 GCACTAAGTGTGCGGGTTTAAAT-TGTACA
1 GCACTAAGTGTGCGAGTTTGATTATGT--A
*
65092274 GCACTAAGTGTGCGAGCTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
65092302 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
65092330 GCACTAAGTGTGCGAGCTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
65092358 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
65092386 GCACTAAGTGTGCGAGCTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
65092414 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
65092442 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
65092470 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
65092497 GCACTGAGTGTG
1 GCACTAAGTGTG
65092509 AGGACTTAAT
Statistics
Matches: 219, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
27 22 0.10
28 175 0.80
29 19 0.09
30 3 0.01
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATGTA
Found at i:65104221 original size:43 final size:42
Alignment explanation
Indices: 65104075--65104221 Score: 161
Period size: 43 Copynumber: 3.5 Consensus size: 42
65104065 TATCCCATAT
* * * * *
65104075 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACACGTAATCATATA-CGATGCCAATGTCCCAGAC
* * *
65104118 AGGGTCTTACACGAAATCATATAACGATGCCAATGTCCCA-AA
1 ATGGTCTTACACGTAATCATAT-ACGATGCCAATGTCCCAGAC
* *
65104160 ATGGTCTTACACATAATCATAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCAT-ATACGATGCCAATGTCCCAGAC
*
65104203 ATGGTCTTACATGTAATCA
1 ATGGTCTTACACGTAATCA
65104222 CATCTTGGTA
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
42 34 0.40
43 51 0.59
44 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCATATACGATGCCAATGTCCCAGAC
Found at i:65104508 original size:24 final size:25
Alignment explanation
Indices: 65104456--65104507 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
65104446 TAACCTTCGA
65104456 TTTCCCCTATCTAAATTCGATTTCT
1 TTTCCCCTATCTAAATTCGATTTCT
*
65104481 TTTCCCTTATCTAAATTCGATTTCT
1 TTTCCCCTATCTAAATTCGATTTCT
65104506 TT
1 TT
65104508 CTTTCAGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.04, T:0.52
Consensus pattern (25 bp):
TTTCCCCTATCTAAATTCGATTTCT
Found at i:65117901 original size:43 final size:46
Alignment explanation
Indices: 65117774--65117938 Score: 137
Period size: 47 Copynumber: 3.6 Consensus size: 46
65117764 TGAGAGCCAT
* * * *
65117774 TGTAAGACCATGTCTGGGACATGGCATCAACCT-CGAGACGTAAGCGT-G
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CTAAGAGA-AT-AG-ATAG
* * *
65117822 TGTAAGA-AATGTCTGGGACAT-GCATCGGCTATGAG-AT-GATAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTAAGAGAATAGATAG
*
65117864 TGTAAGACCATGTCTAGGACATGGCATCGAC-AAGAGATATGAGATAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTAAGAGA-AT-AGATAG
* *
65117911 TATAAGACCGTGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
65117939 AGCACCTTAC
Statistics
Matches: 96, Mismatches: 13, Indels: 17
0.76 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 16 0.17
44 8 0.08
45 4 0.04
46 8 0.08
47 43 0.45
48 7 0.07
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTAAGAGAATAGATAG
Found at i:65133213 original size:27 final size:27
Alignment explanation
Indices: 65133183--65133458 Score: 345
Period size: 27 Copynumber: 10.2 Consensus size: 27
65133173 TTAGTTTACC
*
65133183 AAATTAACAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65133210 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65133237 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
65133264 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65133291 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65133318 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65133345 AAATCACCAAAATACCCCTGTTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65133372 AAATTACCAAAATACCCCTCGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65133399 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65133426 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
65133453 AAATTA
1 AAATTA
65133459 TTGAAATACC
Statistics
Matches: 209, Mismatches: 40, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 209 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:65133320 original size:81 final size:81
Alignment explanation
Indices: 65133183--65133530 Score: 351
Period size: 81 Copynumber: 4.3 Consensus size: 81
65133173 TTAGTTTACC
* * * * * * *
65133183 AAATTAACAAAATACCCCTGGTTTGTAAAATTA-CTAGAATACCCTTGGTTTATAAAATCACCAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATC-AAAATACCCCTCGTTTGTAAAATTACCAA
65133247 AATACCCCTGGTTTGTA
65 AATACCCCTGGTTTGTA
* * ** * *
65133264 AAATTACCAAAATACCCTTGGTTTACAAAATTATCAAAATACCCCTAGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTCGTTTGTAAAATTACCAAA
* * *
65133329 ATACCCTTTGTTTATA
66 ATACCCCTGGTTTGTA
* * * *
65133345 AAATCACCAAAATACCCCTGTTTTGTAAAATTACCAAAATACCCCTCGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTCGTTTGTAAAATTACCAAA
*
65133410 ATACCCCTAGTTTGTA
66 ATACCCCTGGTTTGTA
* * ** ** ***
65133426 AAATTACCAAAATATCCCTGATTTGTGAAATTATTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTCG-TTTGTAAAATTACCAA
**
65133490 AATA-CCCTCGACTTGTA
65 AATACCCCT-GGTTTGTA
*
65133507 AAATTACCAAAATACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
65133531 ACAGAATTAT
Statistics
Matches: 223, Mismatches: 41, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
80 10 0.04
81 212 0.95
82 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTCGTTTGTAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:65133370 original size:108 final size:108
Alignment explanation
Indices: 65133176--65133444 Score: 430
Period size: 108 Copynumber: 2.5 Consensus size: 108
65133166 GAATACTTTA
* * * *
65133176 GTTTACCAAATTAACAAAATACCCCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAAT
1 GTTTACAAAATTATCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
* *
65133241 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
66 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTC
*
65133284 GTTTACAAAATTATCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAAT
1 GTTTACAAAATTATCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
*
65133349 CACCAAAATACCCCTGTTTTGTAAAATTACCAAAATACCCCTC
66 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTC
** *
65133392 GTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCCT
1 GTTTACAAAATTATCAAAATACCCCTAGTTTGTAAAATTACTAAAATA-CCCT
65133445 GATTTGTGAA
Statistics
Matches: 149, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
108 145 0.97
109 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (108 bp):
GTTTACAAAATTATCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTC
Found at i:65133519 original size:27 final size:27
Alignment explanation
Indices: 65133183--65133578 Score: 277
Period size: 27 Copynumber: 14.7 Consensus size: 27
65133173 TTAGTTTACC
* *
65133183 AAATTAACAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
65133210 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
65133237 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
65133264 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
65133291 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
65133318 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
* *
65133345 AAATCACCAAAATACCC-CTGTTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
65133372 AAATTACCAAAATACCCCTCG-TTTGTA
1 AAATTACCAAAATA-CCCTCGATTTGTA
* *
65133399 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
65133426 AAATTACCAAAATATCCCT-GATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTGTA
*** **
65133453 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
65133480 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* **
65133507 AAATTACCAAAATACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *** **
65133534 GAATTATCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
65133561 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
65133579 TGTAGGGTAG
Statistics
Matches: 293, Mismatches: 61, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
25 1 0.00
26 8 0.03
27 275 0.94
28 8 0.03
29 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:65133818 original size:27 final size:27
Alignment explanation
Indices: 65133562--65133809 Score: 354
Period size: 27 Copynumber: 9.2 Consensus size: 27
65133552 CGATTTACAA
*
65133562 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
65133589 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
65133616 AATTACCGAAATACCCTTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
65133643 AATTACCG-CATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
65133669 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
65133696 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
65133723 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
65133750 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
65133777 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
65133804 AATTAC
1 AATTAC
65133810 AAAGATACCT
Statistics
Matches: 198, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 21 0.11
27 177 0.89
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:65133818 original size:81 final size:80
Alignment explanation
Indices: 65133572--65133836 Score: 304
Period size: 80 Copynumber: 3.3 Consensus size: 80
65133562 AATTACCGAA
* * * * * *
65133572 ATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATA
1 ATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTA
* *
65133637 GGGTAAAATTAC-CG
66 GGGTAGAATTACAAG
* * *
65133651 CATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTA-TCGGAATACCCCTG
1 -ATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTG
65133715 TAGGGTAGAATTACCGAA-
64 TAGGGTAGAATTA-C-AAG
* *
65133733 ATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTA
1 ATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTA
*
65133798 GGGTGGAATTACAAAG
66 GGGTAGAATTAC-AAG
* * *
65133814 ATA-CCTTGTGGGGTAAAATTACC
1 ATACCCCTGTAGGGTAGAATTACC
65133837 ATTTTGCCCC
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
80 84 0.54
81 72 0.46
82 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (80 bp):
ATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTA
GGGTAGAATTACAAG
Found at i:65133828 original size:107 final size:106
Alignment explanation
Indices: 65133570--65133836 Score: 358
Period size: 107 Copynumber: 2.5 Consensus size: 106
65133560 AAAATTACCG
* * *
65133570 AAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTA
1 AAATACCCCTGTAGGGTAGAATTAC-GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTA
* *
65133635 TAGGGTAAAATTACCGCATACCCCTGTAGGGTAGAATTATCG
65 TAGGGTAAAATTACCGAATACCCCTGTAGGGTAGAATTATCA
* *
65133677 CAATACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTA
1 AAATACCCCTGTAGGGTAGAATTA-CGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTA
*
65133742 TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTA-CTA
65 TAGGGTAAAATTACCG-AATACCCCTGTAGGGTAGAATTATC-A
* * * * *
65133785 AAATACCCCTGTAGGGTGGAATTACAAAGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACGAA-ATACCCCTGTAGGGTAGAATTACC
65133837 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
107 93 0.66
108 48 0.34
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (106 bp):
AAATACCCCTGTAGGGTAGAATTACGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTAT
AGGGTAAAATTACCGAATACCCCTGTAGGGTAGAATTATCA
Found at i:65134306 original size:22 final size:21
Alignment explanation
Indices: 65134263--65134327 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
65134253 TTAAAGCCTT
* *
65134263 CTGATTATGGCTTCGTGTCAAC
1 CTGAATATGGCTT-GTGCCAAC
65134285 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-ATATGGCT-TGTGCCAAC
*
65134307 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCT-TGTGCCAA
65134328 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 1 0.03
22 33 0.92
23 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (21 bp):
CTGAATATGGCTTGTGCCAAC
Found at i:65134761 original size:6 final size:6
Alignment explanation
Indices: 65134747--65134860 Score: 90
Period size: 6 Copynumber: 18.7 Consensus size: 6
65134737 TTCTCTTACT
* * * *
65134747 TGATAC TGATTC TGATTT TGATTC TG-TTACC AGATAC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC
* * * *
65134796 AGATTC TGATTC TG-TCACC TAATTC TGATTC TAATTC TGATTC TGATTC
1 TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC
65134845 TGATTC T-AGTTC TGAT
1 TGATTC TGA-TTC TGAT
65134861 AATGTTTCTT
Statistics
Matches: 85, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
5 4 0.05
6 74 0.87
7 5 0.06
8 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.46
Consensus pattern (6 bp):
TGATTC
Found at i:65134783 original size:31 final size:31
Alignment explanation
Indices: 65134723--65134803 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
65134713 TTGCATTCAC
* **
65134723 ATTCTGATTTTAGATTCTCTTACTTGATACTG
1 ATTCTGATTTT-GATTCTGTTACCAGATACTG
65134755 ATTCTGATTTTGATTCTGTTACCAGATACTG
1 ATTCTGATTTTGATTCTGTTACCAGATACTG
**
65134786 ATTCTGATTCAGATTCTG
1 ATTCTGATTTTGATTCTG
65134804 ATTCTGTCAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 33 0.75
32 11 0.25
ACGTcount: A:0.22, C:0.16, G:0.15, T:0.47
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCAGATACTG
Found at i:65134793 original size:37 final size:37
Alignment explanation
Indices: 65134747--65134846 Score: 130
Period size: 37 Copynumber: 2.7 Consensus size: 37
65134737 TTCTCTTACT
* * *
65134747 TGATACTGATTCTGATTTTGATTCTGTTACC-AGATAC
1 TGATTCTGATTCTGATTCTGATTCTGTCACCTA-ATAC
* *
65134784 TGATTCTGATTCAGATTCTGATTCTGTCACCTAATTC
1 TGATTCTGATTCTGATTCTGATTCTGTCACCTAATAC
*
65134821 TGATTCTAATTCTGATTCTGATTCTG
1 TGATTCTGATTCTGATTCTGATTCTG
65134847 ATTCTAGTTC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 54 0.98
38 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.45
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGATTCTGTCACCTAATAC
Found at i:65135604 original size:40 final size:40
Alignment explanation
Indices: 65135559--65135719 Score: 250
Period size: 40 Copynumber: 4.0 Consensus size: 40
65135549 AGAATTGAGA
65135559 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* * *
65135599 ATTATATCCGGGCTGAGTCTCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
65135639 GTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
** * *
65135679 GTTGCATCCGGGCTAAGTCCTGAAGGGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
65135719 G
1 G
65135720 ATGTGTAATC
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.19, C:0.21, G:0.32, T:0.29
Consensus pattern (40 bp):
GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:65135778 original size:43 final size:43
Alignment explanation
Indices: 65135708--65135838 Score: 190
Period size: 43 Copynumber: 3.0 Consensus size: 43
65135698 CTGAAGGGCA
* ** *
65135708 TTCGTGCTGGTGATGTGTAATCAGGCCTTCATGCCTAGCAGGC
1 TTCGTGCTGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGC
* *
65135751 TTTGTGCTGGTGATGTGTATTTGGGCCTTCGTTCCTAGCAGGC
1 TTCGTGCTGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGC
* *
65135794 TTCGTGCCGGTGATGTGTATTTGGGTCTTCGTGCCTAGCAGGC
1 TTCGTGCTGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGC
65135837 TT
1 TT
65135839 AATGCCGGTG
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 78 1.00
ACGTcount: A:0.11, C:0.21, G:0.32, T:0.36
Consensus pattern (43 bp):
TTCGTGCTGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGC
Found at i:65136008 original size:25 final size:25
Alignment explanation
Indices: 65135969--65136023 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
65135959 TGTGTAATAA
*
65135969 CGAATGAATATAGGCATTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
65135994 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
65136019 CGAAT
1 CGAAT
65136024 TCTTTAACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:65136095 original size:28 final size:28
Alignment explanation
Indices: 65136007--65136106 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
65135997 ATGAATTGAG
*
65136007 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
* * * *
65136035 GCACTATAGTGTGCGAGA-TCGGTCAA-TGG
1 GCACTAT-GTGTGCGA-ATTC-TTTAACCGA
*
65136064 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
65136092 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
65136107 GATCGGTCAG
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
27 4 0.07
28 31 0.55
29 17 0.30
30 4 0.07
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:65136123 original size:28 final size:28
Alignment explanation
Indices: 65136035--65136136 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 28
65136025 CTTTAACCGA
65136035 GCACTATAGTGTGCGAGATCGGTCAATGG
1 GCACTAT-GTGTGCGAGATCGGTCAATGG
* * * * *
65136064 GCACTGTGTGTGCGA-ATTC-TTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAA-TGG
*
65136092 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAATGG
*
65136120 GCACTGTGTGTGC-AGAT
1 GCACTATGTGTGCGAGAT
65136137 TTCGTTTCAT
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
27 8 0.14
28 40 0.70
29 9 0.16
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAATGG
Found at i:65136129 original size:56 final size:57
Alignment explanation
Indices: 65136006--65136132 Score: 238
Period size: 57 Copynumber: 2.2 Consensus size: 57
65135996 AATGAATTGA
65136006 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATAGTGTGCGAGATCGGTCAATG
1 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATAGTGTGCGAGATCGGTCAATG
*
65136063 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTAT-GTGTGCGAGATCGGTCAGTG
1 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATAGTGTGCGAGATCGGTCAATG
65136119 GGCACTGTGTGTGC
1 GGCACTGTGTGTGC
65136133 AGATTTCGTT
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
56 33 0.48
57 36 0.52
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.28
Consensus pattern (57 bp):
GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATAGTGTGCGAGATCGGTCAATG
Found at i:65145446 original size:19 final size:20
Alignment explanation
Indices: 65145422--65145459 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65145412 GGTACCACCA
65145422 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
65145441 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
65145460 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:65145773 original size:46 final size:46
Alignment explanation
Indices: 65145688--65145809 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
65145678 CGCCCCTAAG
* * * *
65145688 TGAACTCGGAATCAACTCAATGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAA
* * *
65145734 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAA
65145780 TGAACTCGGACTCAACTCAATGAGTTCGGA
1 TGAACTCGGACTCAACTCAATGAGTTCGGA
65145810 TGCTCAACCA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAA
Found at i:65145828 original size:46 final size:45
Alignment explanation
Indices: 65145686--65145828 Score: 119
Period size: 46 Copynumber: 3.1 Consensus size: 45
65145676 CCCGCCCCTA
* * ** *
65145686 AGTGAACTCGGAATCAACTCAATGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAATGAGTTCGGATGTTCACCATCC-T
* * ** **
65145731 AAATGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCAT
1 -AGTGAACTCGGACTCAACTCAATGAGTTCGGATGTTCACCATCC-T
*
65145777 AAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAATGAGTTCGGATGTTC-ACCATCCT
65145824 AGTGA
1 AGTGA
65145829 CATGTCACTT
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
46 75 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAATGAGTTCGGATGTTCACCATCCT
Found at i:65146266 original size:31 final size:30
Alignment explanation
Indices: 65146231--65146291 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
65146221 ATTTAATACG
65146231 AACTTTGGAAAAAATTACACTTTTGCCCCTA
1 AACTTTGG-AAAAATTACACTTTTGCCCCTA
* * *
65146262 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65146292 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 20 0.74
31 7 0.26
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:65155576 original size:26 final size:26
Alignment explanation
Indices: 65155547--65155599 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
65155537 ATCATGGTGG
65155547 TTCGAAGAGTTTATACTCCTCATTCC
1 TTCGAAGAGTTTATACTCCTCATTCC
*
65155573 TTCGAAGAGTTTATACTCCTCGTTCC
1 TTCGAAGAGTTTATACTCCTCATTCC
65155599 T
1 T
65155600 GCTATCAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.40
Consensus pattern (26 bp):
TTCGAAGAGTTTATACTCCTCATTCC
Found at i:65162640 original size:14 final size:15
Alignment explanation
Indices: 65162623--65162656 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
65162613 TTAAATATTT
65162623 ATAATACAAT-AAAA
1 ATAATACAATGAAAA
65162637 ATAA-ACAATGAAAA
1 ATAATACAATGAAAA
65162651 ATAATA
1 ATAATA
65162657 TTTAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.28
14 12 0.67
15 1 0.06
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21
Consensus pattern (15 bp):
ATAATACAATGAAAA
Found at i:65166025 original size:30 final size:30
Alignment explanation
Indices: 65165967--65166026 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
65165957 ATTTAATATG
*
65165967 AACTTTGGCAAAATTATATTTTTGCCCCTA
1 AACTTTGGCAAAATTATAATTTTGCCCCTA
* *
65165997 AACTTTTGCATAATTATACATTTT-CCCCTA
1 AACTTTGGCAAAATTATA-ATTTTGCCCCTA
65166027 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (30 bp):
AACTTTGGCAAAATTATAATTTTGCCCCTA
Found at i:65171048 original size:44 final size:44
Alignment explanation
Indices: 65170985--65171074 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
65170975 AGCCATTTTA
* *
65170985 CCAATTTAAGCCTTCGGATAGTGTGAATGAGTCTTCGACCTATC
1 CCAATTTAAGCCTTCGGATAATGTGAACGAGTCTTCGACCTATC
65171029 CCAATTTAAGCCTTCGGATAATGTGAACGAGTCTTCGACCTATC
1 CCAATTTAAGCCTTCGGATAATGTGAACGAGTCTTCGACCTATC
65171073 CC
1 CC
65171075 GATTCTCAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (44 bp):
CCAATTTAAGCCTTCGGATAATGTGAACGAGTCTTCGACCTATC
Found at i:65179396 original size:15 final size:15
Alignment explanation
Indices: 65179348--65179410 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 15
65179338 CAAAGATAAC
*
65179348 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
65179362 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
65179377 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
65179392 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
65179407 AAGA
1 AAGA
65179411 GATTAAGGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 9 0.22
15 31 0.76
16 1 0.02
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:65179436 original size:15 final size:15
Alignment explanation
Indices: 65179359--65179436 Score: 54
Period size: 15 Copynumber: 5.2 Consensus size: 15
65179349 AGAAAACCGA
*
65179359 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
65179374 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
*
65179388 AATAAAGAAATCC-AG
1 -ATAAAGAAACCCAAG
* **
65179403 AATAAAGAGA-TTAAGG
1 -ATAAAGAAACCCAA-G
65179419 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
65179434 ATA
1 ATA
65179437 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
14 2 0.04
15 44 0.90
16 3 0.06
ACGTcount: A:0.58, C:0.13, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:65182372 original size:46 final size:45
Alignment explanation
Indices: 65182316--65182467 Score: 144
Period size: 46 Copynumber: 3.3 Consensus size: 45
65182306 CCACATATGA
*
65182316 TCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAC
1 TCAACGAGCTCGGGC-TTCGCATCCATAAGTGAACTCGGACTCAAC
* * * * *** *
65182362 TCAACGAGCTCGGATGCCTAG-TTACATCTCTCGAACTCGGACCCAAC
1 TCAACGAGCTCGG--GCTTCGCATCCATAAGT-GAACTCGGACTCAAC
* *
65182409 TCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAC
1 TCAACGAGCTCGGGC-TTCGCATCCATAAGTGAACTCGGACTCAAC
*
65182455 TCAACGAGTTCGG
1 TCAACGAGCTCGG
65182468 ATGCCCAAAT
Statistics
Matches: 82, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
45 1 0.01
46 46 0.56
47 33 0.40
48 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
TCAACGAGCTCGGGCTTCGCATCCATAAGTGAACTCGGACTCAAC
Found at i:65182468 original size:46 final size:45
Alignment explanation
Indices: 65182332--65182468 Score: 152
Period size: 46 Copynumber: 3.0 Consensus size: 45
65182322 AGCTCGGGCG
*
65182332 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-A
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAA
* * *** *
65182376 TGC-CTAGTTACATCTCTCGAACTCGGACCCAACTCAACGAGTTCGGACA
1 TTCGC-A--TCCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGA-A
65182425 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65182469 TGCCCAAATG
Statistics
Matches: 73, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.04
46 33 0.45
47 31 0.42
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (45 bp):
TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAA
Found at i:65182487 original size:46 final size:45
Alignment explanation
Indices: 65182344--65182487 Score: 109
Period size: 46 Copynumber: 3.1 Consensus size: 45
65182334 CGCATCCATA
* * *
65182344 AGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATT-C--CT
* * * *
65182391 -CTCGAACTCGGACCCAACTCAACGAGTTCGGACATTCGC--A-TCCAT
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATTCC-T
65182436 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATGTCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAAT-TCCT
65182483 AGTGA
1 AGTGA
65182488 CGTGTCACTT
Statistics
Matches: 76, Mismatches: 10, Indels: 23
0.70 0.09 0.21
Matches are distributed among these distances:
44 5 0.07
45 1 0.01
46 35 0.46
47 29 0.38
48 3 0.04
49 2 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATTCCT
Found at i:65183380 original size:88 final size:88
Alignment explanation
Indices: 65183231--65183400 Score: 295
Period size: 88 Copynumber: 1.9 Consensus size: 88
65183221 GCTAGCATAT
* *
65183231 GCTAAATCGAACTACCGGGACTCCAAAAACATAAAAATCATTAAAAACGAGGCTAGAACGGACTT
1 GCTAAATCGAACTACCGAGACTCCAAAAACATAAAAATCATTAAAAACGAGACTAGAACGGACTT
*
65183296 ACAATCGAGCTTGAAAGCTTCAA
66 AAAATCGAGCTTGAAAGCTTCAA
* *
65183319 GCTAAATCGAGCTACCGAGACTCCAAAAACATAAAAATCATTAAAAATGAGACTAGAACGGACTT
1 GCTAAATCGAACTACCGAGACTCCAAAAACATAAAAATCATTAAAAACGAGACTAGAACGGACTT
65183384 AAAATCGAGCTTGAAAG
66 AAAATCGAGCTTGAAAG
65183401 ATTGAAAAAC
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 77 1.00
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (88 bp):
GCTAAATCGAACTACCGAGACTCCAAAAACATAAAAATCATTAAAAACGAGACTAGAACGGACTT
AAAATCGAGCTTGAAAGCTTCAA
Found at i:65185399 original size:16 final size:16
Alignment explanation
Indices: 65185378--65185409 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
65185368 TCGTACGAAC
65185378 GAACTCAGTATACCAA
1 GAACTCAGTATACCAA
65185394 GAACTCAGTATACCAA
1 GAACTCAGTATACCAA
65185410 CAGTAGGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.12, T:0.19
Consensus pattern (16 bp):
GAACTCAGTATACCAA
Found at i:65187517 original size:30 final size:30
Alignment explanation
Indices: 65187483--65187542 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
65187473 ATTTAATACG
* *
65187483 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
** *
65187513 AACTTTTTCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
65187543 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.05, T:0.42
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:65189342 original size:48 final size:45
Alignment explanation
Indices: 65189288--65189504 Score: 176
Period size: 45 Copynumber: 4.7 Consensus size: 45
65189278 CATGTGCGCT
*
65189288 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTTCATGTGCC
1 AGTGTAAGACCATGT-T-GGACATGGCATCGGCCA-ATTTCATGAGCC
*
65189336 AGTGTAAGACCATGTTTGGAACATGGCATC-GACAATGTT-ATGAGAGCC
1 AGTGTAAGACCATG-TTGG-ACATGGCATCGGCCAAT-TTCAT--GAGCC
* ** *
65189384 AGTGTAAGACCATGTTGGACATGGCATC-GACGTTGATTGA-GAGCC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCCAAT--TTCATGAGCC
** ** *
65189429 AGTGTAAGACCATGTTGGACATGGCATCGG--GGTTGATTGTGAGCT
1 AGTGTAAGACCATGTTGGACATGGCATCGGCCAATT--TCATGAGCC
*
65189474 AGTGTAAGACCATGTTGCACATGGCATCGGC
1 AGTGTAAGACCATGTTGGACATGGCATCGGC
65189505 ATGGAGACGA
Statistics
Matches: 147, Mismatches: 10, Indels: 26
0.80 0.05 0.14
Matches are distributed among these distances:
42 1 0.01
44 3 0.02
45 66 0.45
46 19 0.13
47 13 0.09
48 44 0.30
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACCATGTTGGACATGGCATCGGCCAATTTCATGAGCC
Found at i:65189439 original size:45 final size:45
Alignment explanation
Indices: 65189288--65189594 Score: 276
Period size: 48 Copynumber: 6.6 Consensus size: 45
65189278 CATGTGCGCT
* * *
65189288 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA--CATTTCATGTGCC
1 AGTGTAAGACCATGT-T-GGACATGGCATCGG-CATTGA-TTGA-GAGCC
* * *
65189336 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATG-TTGG-ACATGGCATCGGCATTGAT-TGAGAGCC
* *
65189384 AGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTGAGAGCC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGATTGAGAGCC
** * *
65189429 AGTGTAAGACCATGTTGGACATGGCATCGGGGTTGATTGTGAGCT
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGATTGAGAGCC
* * ** *
65189474 AGTGTAAGACCATGTTGCACATGGCATCGGCATGGAGACGAGAGCT
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGA-TTGAGAGCC
* * * * *
65189520 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCT
1 AGTGTAAGACCATGT-T-GGACATGGCATCGGCATTGA-TTGAGAGCC
65189568 AGTGTAAGACCATGTTTGGGACATGGC
1 AGTGTAAGACCATG-TT-GGACATGGC
65189595 GTCAACATCT
Statistics
Matches: 225, Mismatches: 25, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
45 81 0.36
46 37 0.16
47 9 0.04
48 94 0.42
49 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACCATGTTGGACATGGCATCGGCATTGATTGAGAGCC
Found at i:65192163 original size:13 final size:13
Alignment explanation
Indices: 65192145--65192171 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
65192135 ATAATTACTA
65192145 ACCTAATTGAGTC
1 ACCTAATTGAGTC
65192158 ACCTAATTGAGTC
1 ACCTAATTGAGTC
65192171 A
1 A
65192172 TGAATTAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (13 bp):
ACCTAATTGAGTC
Found at i:65202406 original size:46 final size:46
Alignment explanation
Indices: 65202339--65202467 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
65202329 TGTAACCCGC
* * * *
65202339 CCATAAGTGAAATCGGACTCAACTCAACGAGCTCGGGCATTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
65202385 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
65202431 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65202468 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:65202732 original size:48 final size:48
Alignment explanation
Indices: 65202673--65202766 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
65202663 TAATAATTAT
*
65202673 CATATCATTTAAATAACATTAAAACATTTAAAATAATAACTATGTTTG
1 CATATCATTTAAATAACAGTAAAACATTTAAAATAATAACTATGTTTG
*
65202721 CATATCTTTTAAATAACAGTAAAACATTTAAAATAATAACTATGTT
1 CATATCATTTAAATAACAGTAAAACATTTAAAATAATAACTATGTT
65202767 ACCAACATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (48 bp):
CATATCATTTAAATAACAGTAAAACATTTAAAATAATAACTATGTTTG
Found at i:65203272 original size:61 final size:62
Alignment explanation
Indices: 65203194--65203316 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 62
65203184 CCTCATATTC
* * *
65203194 TATCATAAAACACCAAAATACACAAA-TTTCACCTGTGGGTATTTTTCGAAATATGAACCCT
1 TATCATAAAACAACAAAATACACAAATTTTCACCTATGGGTATTTTTCCAAATATGAACCCT
65203255 TATCATAAAACAACAAAATACACAAATTTTCACCTATGGGTATTTTTCCAAATATGAACCCT
1 TATCATAAAACAACAAAATACACAAATTTTCACCTATGGGTATTTTTCCAAATATGAACCCT
65203317 AGGTTGAATT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
61 25 0.43
62 33 0.57
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (62 bp):
TATCATAAAACAACAAAATACACAAATTTTCACCTATGGGTATTTTTCCAAATATGAACCCT
Found at i:65214762 original size:68 final size:67
Alignment explanation
Indices: 65214683--65214864 Score: 169
Period size: 68 Copynumber: 2.7 Consensus size: 67
65214673 TATCATGTGT
* ** * *
65214683 ACAAGAAAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGATAT-AG-GATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAAAT-GTAGCTAGGTCACATGTGTGAT-TCAGTGAAGGA-CACC
65214745 ATGTAG
62 ATGTAG
* *
65214751 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATATAAATGTAGCTAGGTCACATGTGTGATT-C-AGTGAAGGACACC
65214816 ATGTAG
62 ATGTAG
* *
65214822 ACAAGAGAGCTACGAG--ATAAAT-TGGCTAGGTCACATGGGTGAT
1 ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATGTGTGAT
65214865 ACTAAGTGTT
Statistics
Matches: 97, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
66 18 0.19
67 7 0.07
68 33 0.34
69 6 0.06
70 8 0.08
71 25 0.26
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATGTGTGATTCAGTGAAGGACACCATGT
AG
Found at i:65228559 original size:53 final size:53
Alignment explanation
Indices: 65228377--65228583 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 53
65228367 ATTAGGGTTT
* * * * * *
65228377 AAGGGTACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGCTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
65228431 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
65228486 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
*
65228539 AAGGATACCACGTAAGACCATGTCC-AGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATG-CCAAGACATGGCAATGGTAAGTT
65228584 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
53 44 0.36
54 39 0.32
55 40 0.33
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:65231135 original size:8 final size:7
Alignment explanation
Indices: 65231109--65231133 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
65231099 TTTTAAAAGT
65231109 AAAATAA
1 AAAATAA
65231116 AAAATAA
1 AAAATAA
65231123 AAAATAA
1 AAAATAA
65231130 AAAA
1 AAAA
65231134 ATTTATGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:65233247 original size:26 final size:26
Alignment explanation
Indices: 65233126--65233293 Score: 103
Period size: 26 Copynumber: 6.5 Consensus size: 26
65233116 GAGATGTACT
*
65233126 TTATTTAGCAAGCCTTGAGCTAGTGA
1 TTATTTAGCAAGCCTTGAGCCAGTGA
* * * *
65233152 TTGTTTAGCAGGTCTTGAGCC-GATGT
1 TTATTTAGCAAGCCTTGAGCCAG-TGA
* * **
65233178 TTAGTTAGCAAG-CTTTACGCTGGTGA
1 TTATTTAGCAAGCCTTGA-GCCAGTGA
* * **
65233204 TTTTTTATC-TTCCTTTGAGCCAGTGA
1 TTATTTAGCAAGCC-TTGAGCCAGTGA
* *
65233230 TTATTTAGCAAGCCTTGAGCCGGTGT
1 TTATTTAGCAAGCCTTGAGCCAGTGA
* *
65233256 TTATCTAGCAAGCTTTGA--CACGATGA
1 TTATTTAGCAAGCCTTGAGCCA-G-TGA
65233282 TTATTTAGCAAG
1 TTATTTAGCAAG
65233294 TACTATGTAC
Statistics
Matches: 104, Mismatches: 30, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
24 1 0.01
25 6 0.06
26 91 0.88
27 6 0.06
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (26 bp):
TTATTTAGCAAGCCTTGAGCCAGTGA
Found at i:65233283 original size:78 final size:78
Alignment explanation
Indices: 65233140--65233288 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 78
65233130 TTAGCAAGCC
* * * * * *
65233140 TTGAGCTAGTGATTGTTTAGCAGGTCTTGAGCCGATGTTTAGTTAGCAAGCTTTACGCTGGTGAT
1 TTGAGCCAGTGATTATTTAGCAAGCCTTGAGCCGATGTTTAGTTAGCAAGCTTTACACTGATGAT
*
65233205 TTTTTATCTTCCT
66 TATTTATCTTCCT
*
65233218 TTGAGCCAGTGATTATTTAGCAAGCCTTGAGCCGGTGTTTA-TCTAGCAAGCTTTGACAC-GATG
1 TTGAGCCAGTGATTATTTAGCAAGCCTTGAGCCGATGTTTAGT-TAGCAAGCTTT-ACACTGATG
65233281 ATTATTTA
64 ATTATTTA
65233289 GCAAGTACTA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 57 0.93
79 3 0.05
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.39
Consensus pattern (78 bp):
TTGAGCCAGTGATTATTTAGCAAGCCTTGAGCCGATGTTTAGTTAGCAAGCTTTACACTGATGAT
TATTTATCTTCCT
Found at i:65233445 original size:33 final size:33
Alignment explanation
Indices: 65233403--65233472 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
65233393 AGATCTAAAG
65233403 TTAACTCGAATAAGTATTATTATTTTGAGTATC
1 TTAACTCGAATAAGTATTATTATTTTGAGTATC
65233436 TTAACTCGAATAAGTATTATTATTTTGAGTATC
1 TTAACTCGAATAAGTATTATTATTTTGAGTATC
65233469 TTAA
1 TTAA
65233473 ATTAGATGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (33 bp):
TTAACTCGAATAAGTATTATTATTTTGAGTATC
Found at i:65234451 original size:54 final size:54
Alignment explanation
Indices: 65234337--65234439 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
65234327 TGGCACAGTC
* * * * *
65234337 AGTTACATGAGCTAGAGACACAGTTGTGTGACCCTTAGTCACACAAGCACAATG
1 AGTTACATGACCTAGAGACACAATCGTGTGACCCTAAGTAACACAAGCACAATG
* *
65234391 AGTTACATGACCTAGGGCCACAATCGTGTGACCCTGAAG-AACACAAGCA
1 AGTTACATGACCTAGAGACACAATCGTGTGACCCT-AAGTAACACAAGCA
65234440 TAGTTAGTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 39 0.95
55 2 0.05
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.19
Consensus pattern (54 bp):
AGTTACATGACCTAGAGACACAATCGTGTGACCCTAAGTAACACAAGCACAATG
Found at i:65237762 original size:14 final size:14
Alignment explanation
Indices: 65237743--65237771 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
65237733 TTATTTTGTA
65237743 TGAATTTGAAAATT
1 TGAATTTGAAAATT
65237757 TGAATTTGAAAATT
1 TGAATTTGAAAATT
65237771 T
1 T
65237772 ATCAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (14 bp):
TGAATTTGAAAATT
Found at i:65240255 original size:16 final size:15
Alignment explanation
Indices: 65240217--65240255 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
65240207 TGGATTCTCG
*
65240217 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
65240232 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
65240247 TATTCTTGG
1 TA-TCTTGG
65240256 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:65243059 original size:28 final size:28
Alignment explanation
Indices: 65243027--65243110 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
65243017 AACCTCGATC
65243027 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
65243055 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
65243077 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
65243105 ACGTGT
1 ACGTGT
65243111 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:65243100 original size:50 final size:49
Alignment explanation
Indices: 65242979--65243163 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 49
65242969 TGAGGTCGCA
* * * * *
65242979 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACCTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TTGGTCACG
* **
65243030 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
65243080 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
65243129 TGTGTAGTACTAAGTGCTGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
65243164 AATAGCTTTG
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 37 0.32
50 44 0.38
51 34 0.30
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:65260255 original size:40 final size:40
Alignment explanation
Indices: 65260202--65260473 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
65260192 CAGCCGCAAA
* * * *
65260202 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
65260242 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
65260282 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
65260322 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
65260362 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
65260402 CATAACTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
65260442 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
65260474 ATCCAATGTT
Statistics
Matches: 212, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 212 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:65269002 original size:40 final size:40
Alignment explanation
Indices: 65268949--65269340 Score: 658
Period size: 40 Copynumber: 9.8 Consensus size: 40
65268939 CAGCCGCAAA
* * * *
65268949 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
65268989 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
65269029 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
65269069 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
65269109 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
65269149 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
65269189 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
65269229 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
65269269 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
65269309 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
65269341 ATCCAATGTT
Statistics
Matches: 328, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 328 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:65277339 original size:57 final size:57
Alignment explanation
Indices: 65277213--65277365 Score: 159
Period size: 57 Copynumber: 2.7 Consensus size: 57
65277203 CCACATATCA
* * *
65277213 TATAACAGGATTACTTGTCCAAGCTAAATCCTAT-TTTCAACATATGCTCACAAGAGCT
1 TATATCAGGATTACTAGTCCAAGCTAAATCCTATCTGT--ACATATGCTCACAAGAGCT
* * * * * *
65277271 TA-ATCAAGATTACTCGTCTAGGCTAAATCCTATCTGTACATATGTTCA-AGAGGGCT
1 TATATCAGGATTACTAGTCCAAGCTAAATCCTATCTGTACATATGCTCACA-AGAGCT
* *
65277327 TATATCAGGATTACTAGTCCAAGCTAAATCTTTTCTGTA
1 TATATCAGGATTACTAGTCCAAGCTAAATCCTATCTGTA
65277366 ATGAGGTCAA
Statistics
Matches: 78, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
55 1 0.01
56 17 0.22
57 56 0.72
58 4 0.05
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.33
Consensus pattern (57 bp):
TATATCAGGATTACTAGTCCAAGCTAAATCCTATCTGTACATATGCTCACAAGAGCT
Found at i:65277595 original size:7 final size:7
Alignment explanation
Indices: 65277583--65277609 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
65277573 AAGTAACATT
65277583 TTTATCA
1 TTTATCA
65277590 TTTATCA
1 TTTATCA
65277597 TTTATCA
1 TTTATCA
65277604 TTTATC
1 TTTATC
65277610 GAGCATTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTATCA
Found at i:65287315 original size:40 final size:40
Alignment explanation
Indices: 65287261--65287485 Score: 276
Period size: 40 Copynumber: 5.6 Consensus size: 40
65287251 CTTGCACAAG
* * *
65287261 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
65287301 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
65287341 GCCTTCGGGTCTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
65287381 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* *
65287421 GCCTTC-GGATCTTAGTCC-GATTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGA-TATAGTCA-CTAGCACAAAT
*
65287462 GCCTTCGGGACTTAGCCCGTATAT
1 GCCTTCGGGACTTAGCCCGGATAT
65287486 CATTCGAATA
Statistics
Matches: 161, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 5 0.03
40 127 0.79
41 25 0.16
42 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:65287356 original size:80 final size:79
Alignment explanation
Indices: 65287225--65287485 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 79
65287215 CTCAAGTAAT
* * * * * *
65287225 CTTCGGGATTTAG-CCGGATATAACTGCTTGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAGCAGCTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGTC
*
65287289 ACTAGCACAGATGC
66 ACTAGCACAAATGC
*
65287303 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAGCTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAG
*
65287367 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * * *
65287383 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCC-GATTATAG
1 CTTCGGGACTTAGCCCGGATATAGCAGCTAGCAC-AATGCCTTCGGGTCTTAGCCCGGA-TATAG
*
65287447 TCACCTAGCACAAAAGC
64 TCA-CTAGCACAAATGC
*
65287464 CTTCGGGACTTAGCCCGTATAT
1 CTTCGGGACTTAGCCCGGATAT
65287486 CATTCGAATA
Statistics
Matches: 158, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
78 12 0.08
79 19 0.12
80 95 0.60
81 32 0.20
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAGCTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:65290718 original size:23 final size:23
Alignment explanation
Indices: 65290667--65290718 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
65290657 CTCACACGCT
*
65290667 TGTGTCGAGGCAAAGCACATGCC
1 TGTGTGGAGGCAAAGCACATGCC
*
65290690 CGTGTGGAGGCAAAGCACATGCC
1 TGTGTGGAGGCAAAGCACATGCC
65290713 TGTGTG
1 TGTGTG
65290719 CTTAGGGACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (23 bp):
TGTGTGGAGGCAAAGCACATGCC
Found at i:65293688 original size:52 final size:52
Alignment explanation
Indices: 65293610--65293807 Score: 288
Period size: 52 Copynumber: 3.8 Consensus size: 52
65293600 ACCAAAAATA
* * * *
65293610 TTATGAATGCAACAAAACAAACAATGAAGCATAATTAAAAACACCACTTAAT
1 TTATGAATGCAACAAAACAATCAATGAAGCATAAATAAAAACACAACTTTAT
*
65293662 TTATGAATGCAACTAAACAATCAATGAAGCATAAATAAAAACACAACTTTAT
1 TTATGAATGCAACAAAACAATCAATGAAGCATAAATAAAAACACAACTTTAT
* *
65293714 TTATGAATGCAACAAAACAATAAATGGAGCATAAATAAAAAAAACACAACTTTAT
1 TTATGAATGCAACAAAACAATCAATGAAGCATAAAT---AAAAACACAACTTTAT
* *
65293769 TTATGAATGCAACCAAACAAGCAATGAAGCATAAATAAA
1 TTATGAATGCAACAAAACAATCAATGAAGCATAAATAAA
65293808 TATACGACAA
Statistics
Matches: 131, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
52 83 0.63
55 48 0.37
ACGTcount: A:0.54, C:0.15, G:0.09, T:0.22
Consensus pattern (52 bp):
TTATGAATGCAACAAAACAATCAATGAAGCATAAATAAAAACACAACTTTAT
Found at i:65293794 original size:107 final size:104
Alignment explanation
Indices: 65293610--65293807 Score: 299
Period size: 107 Copynumber: 1.9 Consensus size: 104
65293600 ACCAAAAATA
* *
65293610 TTATGAATGCAACAAAACAAACAATGAAGCATAATTAAAAACACCACTTAATTTATGAATGCAAC
1 TTATGAATGCAACAAAACAAACAATGAAGCATAATAAAAAACACAACTTAATTTATGAATGCAAC
* *
65293675 TAAACAATCAATGAAGCATAAATAAAAACACAACTTTAT
66 CAAACAAGCAATGAAGCATAAATAAAAACACAACTTTAT
* *
65293714 TTATGAATGCAACAAAACAATA-AATGGAGCATAAATAAAAAAAACACAACTTTATTTATGAATG
1 TTATGAATGCAACAAAACAA-ACAATGAAGCAT-AAT--AAAAAACACAACTTAATTTATGAATG
65293778 CAACCAAACAAGCAATGAAGCATAAATAAA
62 CAACCAAACAAGCAATGAAGCATAAATAAA
65293808 TATACGACAA
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
104 29 0.35
105 4 0.05
107 51 0.61
ACGTcount: A:0.54, C:0.15, G:0.09, T:0.22
Consensus pattern (104 bp):
TTATGAATGCAACAAAACAAACAATGAAGCATAATAAAAAACACAACTTAATTTATGAATGCAAC
CAAACAAGCAATGAAGCATAAATAAAAACACAACTTTAT
Found at i:65306883 original size:39 final size:40
Alignment explanation
Indices: 65306780--65306964 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
65306770 TTGAATGATG
* * * * *
65306780 TCCGGGCTCAGTCCCGAAGGC-TTTGTGCTAATTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-ACTAAA
* * *
65306820 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
65306860 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
65306899 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
65306940 -CCGGTCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65306965 AACAAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 77 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Done.