Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 197 of 276
Found at i:65306986 original size:79 final size:79
Alignment explanation
Indices: 65306833--65306997 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
65306823 GGACTAAGAT
* * ** * *
65306833 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACAAGTGACTAA
*
65306898 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
65306912 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGTCTATGTCCCGAAGGCATTTGAACAAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACAAGTGA-C
* *
65306975 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
65306991 CCGAAGG
1 CCGAAGG
65306998 TACGTGATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.65
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACAAGTGACTAA
ATCCGGGTTAAATC
Found at i:65314474 original size:40 final size:39
Alignment explanation
Indices: 65314390--65314613 Score: 242
Period size: 39 Copynumber: 5.6 Consensus size: 39
65314380 TTGAATGATG
* *
65314390 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
65314429 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAT
*
65314470 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
* * *
65314509 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
* *
65314548 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGA-ATTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-TACTAAT
*
65314587 ATCCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
65314614 AACTAGGAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 75 0.46
40 75 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:65314491 original size:39 final size:40
Alignment explanation
Indices: 65314390--65314613 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
65314380 TTGAATGATG
* *
65314390 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
65314429 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
65314470 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
65314509 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
65314548 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
*
65314587 ATCCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
65314614 AACTAGGAGC
Statistics
Matches: 164, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
39 75 0.46
40 76 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:65314585 original size:79 final size:80
Alignment explanation
Indices: 65314390--65314613 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
65314380 TTGAATGATG
* * * *
65314390 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCT-AAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAA-TTACTATATCCGGGCTAAGACCCGAAGGCAT
*
65314453 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
65314470 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGA-ATTACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
65314531 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * *
65314548 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAATTACTATATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATTACTATATCCGGGCTAAGACCCGAAGGCATTT
65314613 G
66 G
65314614 AACTAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 16
0.83 0.07 0.11
Matches are distributed among these distances:
78 37 0.29
79 55 0.44
80 33 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:65314635 original size:79 final size:79
Alignment explanation
Indices: 65314390--65314646 Score: 208
Period size: 79 Copynumber: 3.3 Consensus size: 79
65314380 TTGAATGATG
* * * * *
65314390 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGGGCTAAG-CCCGAAGGCA
** *
65314452 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
*
65314470 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
** *
65314534 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
65314548 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGA-ATTACT-ATATCCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
* *
65314611 TTGAACTAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
65314628 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
65314647 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 37 0.24
79 68 0.44
80 46 0.30
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:65318454 original size:30 final size:30
Alignment explanation
Indices: 65318420--65318476 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
65318410 CCCTAATATG
65318420 AACTTTGGCAAAATTAC-CATTTTGCCCTTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCTTA
* *
65318450 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGCAAAATTACACTTTTGCCC
65318477 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCTTA
Found at i:65320216 original size:21 final size:21
Alignment explanation
Indices: 65320192--65320255 Score: 128
Period size: 21 Copynumber: 3.0 Consensus size: 21
65320182 ATCCGAAATG
65320192 ATTGACAAAGGTATTCCGTGT
1 ATTGACAAAGGTATTCCGTGT
65320213 ATTGACAAAGGTATTCCGTGT
1 ATTGACAAAGGTATTCCGTGT
65320234 ATTGACAAAGGTATTCCGTGT
1 ATTGACAAAGGTATTCCGTGT
65320255 A
1 A
65320256 GTCTAACAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (21 bp):
ATTGACAAAGGTATTCCGTGT
Found at i:65323780 original size:21 final size:21
Alignment explanation
Indices: 65323756--65323797 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
65323746 TCATCAGATC
*
65323756 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
65323777 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
65323798 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:65326061 original size:30 final size:30
Alignment explanation
Indices: 65326026--65326085 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
65326016 CCCTAATACG
*
65326026 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTACCCCTA
* *
65326056 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
65326086 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:65330084 original size:54 final size:55
Alignment explanation
Indices: 65329980--65330088 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 55
65329970 ACATTGAGAT
*
65329980 AGCATTGGCTATGTATGTGGCACTTTTGTGCGAGATTCCCAAGTATTCGATATTA
1 AGCATTGGCTATGTATGTGGCACTTTTGTGCAAGATTCCCAAGTATTCGATATTA
* *
65330035 AGCATTGGTTATGTATGTGGCAC-TTTGTGTAAGATTCCCAAGTATTCGATATTA
1 AGCATTGGCTATGTATGTGGCACTTTTGTGCAAGATTCCCAAGTATTCGATATTA
65330089 TTCTGAATGG
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 29 0.57
55 22 0.43
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (55 bp):
AGCATTGGCTATGTATGTGGCACTTTTGTGCAAGATTCCCAAGTATTCGATATTA
Found at i:65332452 original size:56 final size:56
Alignment explanation
Indices: 65332366--65332541 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
65332356 ACAAGGGATG
65332366 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
65332422 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
65332478 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
65332534 ATGGGCAA
1 ATGGGCAA
65332542 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:65332576 original size:112 final size:111
Alignment explanation
Indices: 65332366--65332580 Score: 258
Period size: 112 Copynumber: 1.9 Consensus size: 111
65332356 ACAAGGGATG
65332366 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
* * * ** ** ***
65332431 ACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
66 ACATCTAATGAAAAATGAAGTGAGAAAACAAAAA-AAAATAAGAAGC
*
65332478 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATGGGCAAT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAA-
65332543 AA-A-CTAAT-AAGAAATGGAAG-GAAGAAAACAAAAAAAAA
65 AACATCTAATGAA-AAAT-GAAGTG-AGAAAACAAAAAAAAA
65332581 GAAAAGAATG
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
110 2 0.02
111 11 0.12
112 73 0.83
113 2 0.02
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.20
Consensus pattern (111 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
ACATCTAATGAAAAATGAAGTGAGAAAACAAAAAAAAATAAGAAGC
Found at i:65333529 original size:39 final size:40
Alignment explanation
Indices: 65333429--65333613 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
65333419 TCGAATGATG
* * * *
65333429 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
**
65333468 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65333509 TCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
65333548 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
65333587 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGTTAAGTCCCGAAGGCATTTG
65333614 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 37 0.29
40 79 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:65333635 original size:79 final size:79
Alignment explanation
Indices: 65333482--65333646 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
65333472 GGACTAAGAT
* * **
65333482 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
65333547 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
65333561 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
65333624 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
65333640 CCGAAGG
1 CCGAAGG
65333647 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:65340764 original size:30 final size:30
Alignment explanation
Indices: 65340693--65340775 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
65340683 CTTTTGTTTC
* *
65340693 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
65340724 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
65340753 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
65340776 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:65340775 original size:18 final size:18
Alignment explanation
Indices: 65340726--65340781 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
65340716 CACTCTCAAA
* *
65340726 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
65340743 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
65340761 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
65340780 TT
1 TT
65340782 CAAAGACTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:65340782 original size:12 final size:12
Alignment explanation
Indices: 65340751--65340775 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65340741 TTTTTCAATC
65340751 TCATTTTCTTTT
1 TCATTTTCTTTT
65340763 TCATTTTCTTTT
1 TCATTTTCTTTT
65340775 T
1 T
65340776 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:65340793 original size:12 final size:12
Alignment explanation
Indices: 65340778--65340808 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
65340768 TTCTTTTTGC
65340778 TTTTCAAAGACT
1 TTTTCAAAGACT
*
65340790 TTTTCAAAGGCT
1 TTTTCAAAGACT
65340802 TTTTCAA
1 TTTTCAA
65340809 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGACT
Found at i:65343127 original size:30 final size:30
Alignment explanation
Indices: 65343041--65343138 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
65343031 TTAAACTAAA
* *
65343041 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * * * * *
65343071 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * *
65343101 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
65343131 ATGAGCTA
1 ATGAGCTA
65343139 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
Found at i:65343872 original size:196 final size:196
Alignment explanation
Indices: 65343538--65343923 Score: 553
Period size: 196 Copynumber: 2.0 Consensus size: 196
65343528 ACCTTGTAAG
* * * * *
65343538 ATAATTGGTATGGGCACCGTTTAGATTAGAATGCATGGTAGAATTATTAGAACTTTTTCAGATGT
1 ATAATTGGTATGGGCACCATTCAAATCAGAATGCATGGTAGAATTATTAGAACTTTGTCAGATGT
**
65343603 CAGACATGTGATAGATTTAAAGAAAAACATCATCTCCCTAGGAAATTTGGACTCAAAGGGTTGTA
66 CAGACATGTGATAGATTTAAAGAAAAACATCATCTCCCTAGGAAATTTAAACTCAAAGGGTTGTA
* * * *
65343668 GAATCAACATCGAGTCAAA-TGACGTTAAGGTATCTCGTGGTGCTTTAGTTTTGATGAGAGCTTG
131 GAATCAACATCGAGTCAAACAG-CATTAAGGTATCTCGTGGTGATTTAGTTTTAATGAGAGCTTG
65343732 AA
195 AA
65343734 ATAATTGGTATGGGCACCATTCAAATCAGAATGCA-GGATAGAATTATTAGAACTTTGTCAGATG
1 ATAATTGGTATGGGCACCATTCAAATCAGAATGCATGG-TAGAATTATTAGAACTTTGTCAGATG
* * * * **
65343798 TTAGACATGTGACT-GATTTAAAGAAAAACCTCATTTCCTTAGGAAATTTAAACTTGAAGGGTTG
65 TCAGACATGTGA-TAGATTTAAAGAAAAACATCATCTCCCTAGGAAATTTAAACTCAAAGGGTTG
* *
65343862 TGGAATCAACATCGAGTCAAACAGCATTAAGGTGTCTCGTGGTGATTTAGTTTTAATGAGAG
129 TAGAATCAACATCGAGTCAAACAGCATTAAGGTATCTCGTGGTGATTTAGTTTTAATGAGAG
65343924 GTCAAAAGAC
Statistics
Matches: 168, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
195 2 0.01
196 164 0.98
197 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (196 bp):
ATAATTGGTATGGGCACCATTCAAATCAGAATGCATGGTAGAATTATTAGAACTTTGTCAGATGT
CAGACATGTGATAGATTTAAAGAAAAACATCATCTCCCTAGGAAATTTAAACTCAAAGGGTTGTA
GAATCAACATCGAGTCAAACAGCATTAAGGTATCTCGTGGTGATTTAGTTTTAATGAGAGCTTGA
A
Found at i:65345914 original size:21 final size:21
Alignment explanation
Indices: 65345871--65345918 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
65345861 AAAAATGATA
*
65345871 AAAATTATTTAAATTTAATTAT
1 AAAA-TATATAAATTTAATTAT
65345893 AAAATATATAAATATTAA-TAT
1 AAAATATATAAAT-TTAATTAT
65345914 AAAAT
1 AAAAT
65345919 TACTTTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AAAATATATAAATTTAATTAT
Found at i:65362681 original size:35 final size:35
Alignment explanation
Indices: 65362642--65362711 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
65362632 CAAAGAATTA
*
65362642 GGGTAATTACATCGATAATTAGCCATAATGACTTT
1 GGGTAATTACACCGATAATTAGCCATAATGACTTT
*
65362677 GGGTAATTACACCGATAATTAGCCGTAATGACTTT
1 GGGTAATTACACCGATAATTAGCCATAATGACTTT
65362712 CAAACTTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (35 bp):
GGGTAATTACACCGATAATTAGCCATAATGACTTT
Found at i:65365362 original size:14 final size:15
Alignment explanation
Indices: 65365343--65365384 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 15
65365333 CATAGCTTTA
65365343 AATTTTGAATTG-TT
1 AATTTTGAATTGTTT
65365357 AATTTTGAATTGTTT
1 AATTTTGAATTGTTT
65365372 AAGTATTTGAATT
1 AA-T-TTTGAATT
65365385 TTGGTGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 12 0.48
15 4 0.16
16 1 0.04
17 8 0.32
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (15 bp):
AATTTTGAATTGTTT
Found at i:65367636 original size:47 final size:48
Alignment explanation
Indices: 65367567--65367740 Score: 167
Period size: 49 Copynumber: 3.6 Consensus size: 48
65367557 GTATAATGCT
65367567 GATGCCATGTC-CTAGACATGGTCTTACACTGGCTCATC-CATCAAGTC
1 GATGCCATGTCTC-AGACATGGTCTTACACTGGCTCATCACATCAAGTC
* * * *
65367614 GATGCCATGTCTCAGACATGGTCTTACACTGACT-ATCGAAATCGAGGTT
1 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCATC-ACATC-AAGTC
* * * * * *
65367663 GACGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATATCCATGCC
1 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCATCAC--AT-CAAGTC
*
65367713 GATGCCATGTCTAAGACATGGTCTTACA
1 GATGCCATGTCTCAGACATGGTCTTACA
65367741 TTGACACATC
Statistics
Matches: 102, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
46 3 0.03
47 31 0.30
48 5 0.05
49 34 0.33
50 28 0.27
51 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCTCAGACATGGTCTTACACTGGCTCATCACATCAAGTC
Found at i:65367738 original size:99 final size:96
Alignment explanation
Indices: 65367570--65367745 Score: 246
Period size: 99 Copynumber: 1.8 Consensus size: 96
65367560 TAATGCTGAT
* * * * *
65367570 GCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCTCAGACATGG
1 GCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGCCGATGCCATGTCTAAGACATGG
65367635 TCTTACACTGACTATCGAAATCGAGGTTGAC
66 TCTTACACTGACTATCGAAATCGAGGTTGAC
*
65367666 GCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATATCCATGCCGATGCCATGTCTAAGAC
1 GCCATGTCCCAAACATGGTCTTACACTAGCTCATC-C--AT-CAAGCCGATGCCATGTCTAAGAC
*
65367730 ATGGTCTTACATTGAC
62 ATGGTCTTACACTGAC
65367746 ACATCTCGTA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
95 2 0.03
96 30 0.43
98 2 0.03
99 35 0.51
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (96 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGCCGATGCCATGTCTAAGACATGG
TCTTACACTGACTATCGAAATCGAGGTTGAC
Found at i:65367796 original size:46 final size:44
Alignment explanation
Indices: 65367710--65367830 Score: 145
Period size: 46 Copynumber: 2.7 Consensus size: 44
65367700 ACATATCCAT
* *
65367710 GCCGATGCCATGTCTAAGACATGGTCTTACATTGACACATCTCGTA-
1 GCCGATG-CATGTCCAAGACAT-GTCTTACATTCACACATCTCG-AG
* *
65367756 GCCGATGTATGTCCAAGACATCTCTTACATTCACTTACATCTCGAG
1 GCCGATGCATGTCCAAGACATGTCTTACATTCAC--ACATCTCGAG
*
65367802 GCCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCAAGACATGTCTTACA
65367831 CTGGCAACAC
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 11 0.17
45 13 0.20
46 41 0.63
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCAAGACATGTCTTACATTCACACATCTCGAG
Found at i:65379327 original size:27 final size:27
Alignment explanation
Indices: 65379294--65379438 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
65379284 GGATAAGTTA
*
65379294 TAGAATTACCGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCTTGTAAGG
65379321 TAGAATTACCGAAATACCCTTGT-AGG
1 TAGAATTACCGAAATACCCTTGTAAGG
* * *
65379347 ATAGAATTACTGAAACACCCTTGTAGGG
1 -TAGAATTACCGAAATACCCTTGTAAGG
* *
65379375 TAGAAATACCGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCTTGTAAGG
* *
65379402 TAGAATTACCGAGATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAAGG
*
65379429 TAAAATTACC
1 TAGAATTACC
65379439 ATTTTGCCCC
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.03
27 97 0.95
28 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCTTGTAAGG
Found at i:65380949 original size:28 final size:28
Alignment explanation
Indices: 65380910--65380975 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
65380900 TGGAACGGGT
*
65380910 CTAAA-AACGGGAGTTTGTAAAGAAACA
1 CTAAATAAAGGGAGTTTGTAAAGAAACA
*
65380937 CTGAATAAAGGGAGTTTGTAAAGAAACA
1 CTAAATAAAGGGAGTTTGTAAAGAAACA
*
65380965 CTAAATGAAGG
1 CTAAATAAAGG
65380976 TTTTCGAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.12
28 30 0.88
ACGTcount: A:0.47, C:0.09, G:0.24, T:0.20
Consensus pattern (28 bp):
CTAAATAAAGGGAGTTTGTAAAGAAACA
Found at i:65386751 original size:27 final size:26
Alignment explanation
Indices: 65386717--65386845 Score: 145
Period size: 27 Copynumber: 4.8 Consensus size: 26
65386707 TGGATAAGTT
65386717 GTAGAATTACCGAAATATCCCTGTAAG
1 GTAGAATTACCGAAATA-CCCTGTAAG
**
65386744 GTAGAATTACATAAATACTCCTGT-AG
1 GTAGAATTACCGAAATAC-CCTGTAAG
* *
65386770 GATAGAATTACCAAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCC-TGTAAG
*
65386798 GTAGAAATACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATA-CCCTGTAAG
65386825 GTAGAATTACC-AAGATACCCT
1 GTAGAATTACCGAA-ATACCCT
65386846 TGTGGGGTAA
Statistics
Matches: 87, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
26 12 0.14
27 70 0.80
28 5 0.06
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (26 bp):
GTAGAATTACCGAAATACCCTGTAAG
Found at i:65386801 original size:54 final size:54
Alignment explanation
Indices: 65386717--65386858 Score: 173
Period size: 54 Copynumber: 2.6 Consensus size: 54
65386707 TGGATAAGTT
* * * * *
65386717 GTAGAATTACCGAAATATCCC-TGTAAGGTAGAATTACATAAATACTCCTGT-AG
1 GTAGAATTACCAAAATA-CCCTTGTAGGGTAGAAATACAGAAATACCCCTGTAAG
*
65386770 GATAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAAG
1 G-TAGAATTACCAAAATACCCTTGTAGGGTAGAAATACAGAAATACCCCTGTAAG
* *
65386825 GTAGAATTACCAAGATACCCTTGTGGGGTA-AAAT
1 GTAGAATTACCAAAATACCCTTGTAGGGTAGAAAT
65386859 GACTATTTTG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
53 8 0.10
54 67 0.86
55 3 0.04
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (54 bp):
GTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACAGAAATACCCCTGTAAG
Found at i:65387531 original size:27 final size:26
Alignment explanation
Indices: 65387487--65387538 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65387477 CTCGCTGTAA
*
65387487 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
65387514 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
65387539 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:65387603 original size:33 final size:32
Alignment explanation
Indices: 65387554--65387617 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
65387544 CTCGCTACAA
* *
65387554 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
65387587 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
65387618 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:65387631 original size:27 final size:26
Alignment explanation
Indices: 65387579--65387638 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
65387569 ACATATATAT
*
65387579 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
65387605 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
65387632 ATATCTG
1 ATATCTG
65387639 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:65392935 original size:49 final size:49
Alignment explanation
Indices: 65392857--65393102 Score: 303
Period size: 49 Copynumber: 5.0 Consensus size: 49
65392847 GTAGCCAAAG
* * *
65392857 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
65392906 TTATCCGGTACACGTAGTAACCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
65392956 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * *
65393006 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
65393056 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
65393103 TCACAATAGC
Statistics
Matches: 165, Mismatches: 29, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 80 0.48
50 47 0.28
51 38 0.23
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:65393093 original size:100 final size:99
Alignment explanation
Indices: 65392859--65393102 Score: 346
Period size: 100 Copynumber: 2.5 Consensus size: 99
65392849 AGCCAAAGCT
* * * * * *
65392859 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
* *
65392924 AACCTGCACTTAGTACTACACACGTGACCTAACC
66 AACCTGCACTTAGTACTACACACGCGACCTAACA
* * *
65392958 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATA
* *
65393023 GTAGCCTGCACTTAGTACTACACATGCGACC-AACA
64 GTAACCTGCACTTAGTACTACACACGCGACCTAACA
65393058 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
65393103 TCACAATAGC
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 39 0.30
100 48 0.38
101 41 0.32
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
AACCTGCACTTAGTACTACACACGCGACCTAACA
Found at i:65398419 original size:25 final size:25
Alignment explanation
Indices: 65398385--65398499 Score: 140
Period size: 25 Copynumber: 4.6 Consensus size: 25
65398375 ATTCCTGTAT
* *
65398385 GCTCATACGAGCTATGAATCGGGAA
1 GCTCATACGAGCTGTAAATCGGGAA
* * *
65398410 GCTCATACGAGCTGTGAATTGGAAA
1 GCTCATACGAGCTGTAAATCGGGAA
*
65398435 GCTCATACGAACTGTAAATCGGGAA
1 GCTCATACGAGCTGTAAATCGGGAA
* * *
65398460 ACTCATACGAGCTGTAAATTGAGAA
1 GCTCATACGAGCTGTAAATCGGGAA
*
65398485 GCTCATACAAGCTGT
1 GCTCATACGAGCTGT
65398500 GGTGTGCCCG
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 77 1.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (25 bp):
GCTCATACGAGCTGTAAATCGGGAA
Found at i:65398441 original size:50 final size:50
Alignment explanation
Indices: 65398385--65398497 Score: 156
Period size: 50 Copynumber: 2.3 Consensus size: 50
65398375 ATTCCTGTAT
* * *
65398385 GCTCATACGAGCTATGAATCGGGAAGCTCATACGAGCTGTGAATTG-GAAA
1 GCTCATACGAGCTATAAATCGGGAAACTCATACGAGCTGTAAATTGAG-AA
* *
65398435 GCTCATACGAACTGTAAATCGGGAAACTCATACGAGCTGTAAATTGAGAA
1 GCTCATACGAGCTATAAATCGGGAAACTCATACGAGCTGTAAATTGAGAA
*
65398485 GCTCATACAAGCT
1 GCTCATACGAGCT
65398498 GTGGTGTGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 54 0.98
51 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (50 bp):
GCTCATACGAGCTATAAATCGGGAAACTCATACGAGCTGTAAATTGAGAA
Found at i:65400146 original size:40 final size:40
Alignment explanation
Indices: 65400098--65400285 Score: 295
Period size: 40 Copynumber: 4.7 Consensus size: 40
65400088 ACAAACACAT
* * *
65400098 TTGCCTTCGGGTCTTAACCCGGACATATGAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
65400138 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
65400178 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
65400218 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
65400258 TTGCCTTCGGGTCATAACCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
65400286 TCCAATGTTC
Statistics
Matches: 135, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 135 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:65404065 original size:47 final size:47
Alignment explanation
Indices: 65403987--65405000 Score: 1924
Period size: 47 Copynumber: 21.6 Consensus size: 47
65403977 CCCTTCGGGA
* * * *
65403987 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
65404034 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404081 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404128 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404175 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404222 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404269 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404316 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404363 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404410 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404457 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404504 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404551 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404598 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404645 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404692 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404739 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404786 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404833 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404880 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404926 C-TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65404974 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
65405001 TATTCAAATA
Statistics
Matches: 951, Mismatches: 12, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 937 0.99
48 1 0.00
49 6 0.01
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:65406706 original size:13 final size:13
Alignment explanation
Indices: 65406688--65406712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65406678 TACTAAATTT
65406688 TCATGGATTCAAA
1 TCATGGATTCAAA
65406701 TCATGGATTCAA
1 TCATGGATTCAA
65406713 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:65411337 original size:27 final size:26
Alignment explanation
Indices: 65411307--65411365 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
65411297 GCCACCTATA
65411307 AGCCAAAAAGAACAGTCACTTGAAGGG
1 AGCCAAAAA-AACAGTCACTTGAAGGG
* *
65411334 AGCCAACAAAATAGTCACTTGAAGGG
1 AGCCAAAAAAACAGTCACTTGAAGGG
65411360 AGCCAA
1 AGCCAA
65411366 CAAACACCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 22 0.73
27 8 0.27
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (26 bp):
AGCCAAAAAAACAGTCACTTGAAGGG
Found at i:65411351 original size:26 final size:26
Alignment explanation
Indices: 65411320--65411369 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
65411310 CAAAAAGAAC
65411320 AGTCACTTGAAGGGAGCCAACAAAAT
1 AGTCACTTGAAGGGAGCCAACAAAAT
65411346 AGTCACTTGAAGGGAGCCAACAAA
1 AGTCACTTGAAGGGAGCCAACAAA
65411370 CACCACACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.14
Consensus pattern (26 bp):
AGTCACTTGAAGGGAGCCAACAAAAT
Found at i:65414362 original size:45 final size:45
Alignment explanation
Indices: 65414307--65414570 Score: 332
Period size: 45 Copynumber: 5.7 Consensus size: 45
65414297 TATGAGAGCT
*
65414307 AGTGCAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTC
* * * *
65414352 AATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAT--AT--GTGTC
* * * *
65414402 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATATGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CT--TGATATGTG-TC
*
65414451 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAATATGTGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTC
*
65414497 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTC
65414542 AGTGTAAGACCAT-TCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
65414571 CGTACTGATA
Statistics
Matches: 193, Mismatches: 16, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
44 16 0.08
45 87 0.45
46 5 0.03
47 6 0.03
48 5 0.03
49 3 0.02
50 67 0.35
51 1 0.01
52 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTC
Found at i:65414429 original size:50 final size:48
Alignment explanation
Indices: 65414298--65414665 Score: 312
Period size: 50 Copynumber: 7.8 Consensus size: 48
65414288 CTAGGGAGAT
* * *
65414298 ATGAGAGCTAGTGCAAGACCATGTCTGGGACATGGCATCGGCTTGAT-
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATA
* * *
65414345 AT--GTGTCAATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGATA
* *
65414392 GATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGA
1 -ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGATA
*
65414442 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT---TA
1 -ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATA
* * * *
65414488 AT-ATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGAT-
1 ATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATA
* * *
65414535 AT--GTGTCAGTGTAAGACCAT-TCTGGGACATGGCATCCG-TACTGATA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-C-GATA
* * * * * **
65414581 GATGAGAGCCAATGTAAGACCATTTTTGGGACATAGCATCGACTTTAGT-
1 -ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGA-TA
* * ** *
65414630 GTGTGAGCCAACGTAAGACCATGTCCGGGACATGGC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGC
65414666 GTTAGCACCT
Statistics
Matches: 265, Mismatches: 37, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.00
44 18 0.07
45 91 0.34
46 5 0.02
47 6 0.02
48 32 0.12
49 18 0.07
50 92 0.35
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATA
Found at i:65416078 original size:54 final size:54
Alignment explanation
Indices: 65416020--65416127 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
65416010 ATTATGATAC
65416020 GTGTTAACATGATTAGCCAAATGTATTGGCCTATATTAAGTTATTTGTATATGG
1 GTGTTAACATGATTAGCCAAATGTATTGGCCTATATTAAGTTATTTGTATATGG
*
65416074 GTGTTAACATGATTAGCCAAATGTATTGGCCTATATTGAGTTATTTGTATATGG
1 GTGTTAACATGATTAGCCAAATGTATTGGCCTATATTAAGTTATTTGTATATGG
65416128 CCATGAAGGG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (54 bp):
GTGTTAACATGATTAGCCAAATGTATTGGCCTATATTAAGTTATTTGTATATGG
Found at i:65416835 original size:34 final size:34
Alignment explanation
Indices: 65416797--65416867 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
65416787 TTAGCCCCTC
65416797 TTTCAGCAGCAGTAACAGTCTGGGCCT-AAGCCCA
1 TTTCAGCAGCAGTAACAGTCTGGGCCTCAA-CCCA
* * **
65416831 TTTCAGTATCAGTGGCAGTCTGGGCCTCAACCCA
1 TTTCAGCAGCAGTAACAGTCTGGGCCTCAACCCA
65416865 TTT
1 TTT
65416868 TAGAATGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 30 0.94
35 2 0.06
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (34 bp):
TTTCAGCAGCAGTAACAGTCTGGGCCTCAACCCA
Found at i:65419219 original size:39 final size:39
Alignment explanation
Indices: 65419167--65419287 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
65419157 AATTATATTA
* *
65419167 CCAGCACAAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
65419206 CCTGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
65419245 CCAGCACGAAGCCTGCGGGATTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
65419284 CCAG
1 CCAG
65419288 TATCTTGCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:65437473 original size:37 final size:37
Alignment explanation
Indices: 65437415--65437523 Score: 111
Period size: 35 Copynumber: 3.0 Consensus size: 37
65437405 AGTCTAAAGT
*
65437415 AATATGCGCCTAACGCTCATCAATATAATTGAAGTAA
1 AATATGCGCCCAACGCTCATCAATATAATTGAAGTAA
* * *
65437452 AATGTGTGCCCAACAG-TCATCAA-A-ACGTCTGAAGT--
1 AATATGCGCCCAAC-GCTCATCAATATA-AT-TGAAGTAA
*
65437487 AATATGCGCCCAACGCTCATCGATATAATTGAAGTAA
1 AATATGCGCCCAACGCTCATCAATATAATTGAAGTAA
65437524 TTTGTTACTC
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
34 1 0.02
35 25 0.45
36 4 0.07
37 25 0.45
38 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (37 bp):
AATATGCGCCCAACGCTCATCAATATAATTGAAGTAA
Found at i:65437487 original size:72 final size:72
Alignment explanation
Indices: 65437372--65437523 Score: 225
Period size: 72 Copynumber: 2.1 Consensus size: 72
65437362 TCAGTACAAC
* * * *
65437372 TGAAGTGAGATGTGTGCCCAACACTGATCGAAAAGTCTAAAGTAATATGCGCCTAACGCTCATCA
1 TGAAGTAAAATGTGTGCCCAACACTCATCGAAAAGTCTAAAGTAATATGCGCCCAACGCTCATCA
65437437 ATATAAT
66 ATATAAT
* *
65437444 TGAAGTAAAATGTGTGCCCAACAGTCATC-AAAACGTCTGAAGTAATATGCGCCCAACGCTCATC
1 TGAAGTAAAATGTGTGCCCAACACTCATCGAAAA-GTCTAAAGTAATATGCGCCCAACGCTCATC
*
65437508 GATATAAT
65 AATATAAT
65437516 TGAAGTAA
1 TGAAGTAA
65437524 TTTGTTACTC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
71 4 0.06
72 68 0.94
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (72 bp):
TGAAGTAAAATGTGTGCCCAACACTCATCGAAAAGTCTAAAGTAATATGCGCCCAACGCTCATCA
ATATAAT
Found at i:65437507 original size:35 final size:34
Alignment explanation
Indices: 65437387--65437507 Score: 102
Period size: 35 Copynumber: 3.4 Consensus size: 34
65437377 TGAGATGTGT
* * *
65437387 GCCCAACACTGATCGAAAAGTCTAAAGTAATATGC
1 GCCCAACGCTCATC-AAAAGTCTGAAGTAATATGC
* * * *
65437422 GCCTAACGCTCATCAATATAAT-TGAAGTAAAATGTGT
1 GCCCAACGCTCATCAA-A-AGTCTGAAGT--AATATGC
65437459 GCCCAACAG-TCATCAAAACGTCTGAAGTAATATGC
1 GCCCAAC-GCTCATCAAAA-GTCTGAAGTAATATGC
65437494 GCCCAACGCTCATC
1 GCCCAACGCTCATC
65437508 GATATAATTG
Statistics
Matches: 67, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
34 3 0.04
35 35 0.52
36 4 0.06
37 24 0.36
38 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (34 bp):
GCCCAACGCTCATCAAAAGTCTGAAGTAATATGC
Found at i:65439728 original size:42 final size:41
Alignment explanation
Indices: 65439607--65439728 Score: 104
Period size: 42 Copynumber: 2.9 Consensus size: 41
65439597 TATCGTACCA
* **
65439607 ATGCCATATCCAAGATATGGTCTTACATGTAATCTTGTATCG
1 ATGCCA-ATCCAAGATATGGTCTTACACGTAATCTCATATCG
* * * *
65439649 ATGCCAATAGCATAGCTATAGTCTTTA-ACG-AAGTCTCATCTCG
1 ATGCCAAT-CCA-AGATATGGTC-TTACACGTAA-TCTCATATCG
*
65439692 ATGCCACATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCA-ATCCAAGATATGGTCTTACACGTAATCTCA
65439729 GTAACCCTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
41 5 0.08
42 26 0.42
43 26 0.42
44 5 0.08
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (41 bp):
ATGCCAATCCAAGATATGGTCTTACACGTAATCTCATATCG
Found at i:65442710 original size:6 final size:6
Alignment explanation
Indices: 65442699--65442725 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
65442689 AAAAATCAAG
65442699 GAAATT GAAATT GAAATT GAAATT GAA
1 GAAATT GAAATT GAAATT GAAATT GAA
65442726 TAGGGAGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.30
Consensus pattern (6 bp):
GAAATT
Found at i:65444472 original size:32 final size:31
Alignment explanation
Indices: 65444429--65444506 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
65444419 TGATATTGAA
* *
65444429 ATGGGCCAGGCCCAACTGATACTGGTTCTAAT
1 ATGGGCTAGGCCCAACTGATA-TGGTTCTAAG
* *
65444461 ATGGGCTAGGCCCAACTGATATTGTTCTGAG
1 ATGGGCTAGGCCCAACTGATATGGTTCTAAG
*
65444492 ATAGGCTAGGCCCAA
1 ATGGGCTAGGCCCAA
65444507 TTAAGACTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 21 0.51
32 20 0.49
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (31 bp):
ATGGGCTAGGCCCAACTGATATGGTTCTAAG
Found at i:65445502 original size:27 final size:27
Alignment explanation
Indices: 65445483--65445582 Score: 112
Period size: 27 Copynumber: 3.6 Consensus size: 27
65445473 ATATATTAAG
*
65445483 TCCGCACACTCAGTGCTATATAATCAA
1 TCCGCACACTTAGTGCTATATAATCAA
65445510 -CTCGCACACTTAGTGCTATATAATCAA
1 TC-CGCACACTTAGTGCTATATAATCAA
* * *
65445537 ACTCGCACACTTAGTGCTATACAATTTAAA
1 TC-CGCACACTTAGTGCTATATAA--TCAA
*
65445567 CCCGCACACTTAGTGC
1 TCCGCACACTTAGTGC
65445583 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
26 1 0.02
27 24 0.37
28 22 0.34
29 14 0.22
30 4 0.06
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (27 bp):
TCCGCACACTTAGTGCTATATAATCAA
Found at i:65445548 original size:28 final size:28
Alignment explanation
Indices: 65445485--65445582 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
65445475 ATATTAAGTC
*
65445485 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
65445512 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
65445540 CGCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
65445569 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65445583 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 22 0.34
28 24 0.37
29 19 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65453643 original size:28 final size:27
Alignment explanation
Indices: 65453580--65453731 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
65453570 ATATTAAGTC
* *
65453580 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
65453607 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
65453635 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
65453662 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
65453690 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
65453717 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65453732 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:65453664 original size:55 final size:55
Alignment explanation
Indices: 65453580--65453756 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
65453570 ATATTAAGTC
* * *
65453580 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
65453635 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
65453690 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
65453746 CGCACACTTAG
1 CGCACACTTAG
65453757 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:65462836 original size:43 final size:41
Alignment explanation
Indices: 65462738--65462901 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 41
65462728 TATCGCGATG
* ** *
65462738 TGATTACATGTAAGACCATGTCTGGGACATCAGCATTGTAT
1 TGATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
65462779 TGAGATTAT-GTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT
1 T--GATT-TCATGTAAGACCATGTCTGGGACATTGGCATCG-T-AT
*
65462824 TGATTTCATGTAAGA-CATTGTCTGGGACAGTGGCATCGATAT
1 TGATTTCATGTAAGACCA-TGTCTGGGACATTGGCATCG-TAT
* *** * *
65462866 GTTACAACATGTAAGACCATATCTGGGA-AATGGCAT
1 -TGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
65462902 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 12 0.12
43 81 0.81
44 3 0.03
45 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (41 bp):
TGATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:65477217 original size:75 final size:75
Alignment explanation
Indices: 65477094--65477243 Score: 291
Period size: 75 Copynumber: 2.0 Consensus size: 75
65477084 TTATCGTCAT
65477094 TTTATTCAGCTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTTTCACAAACAATA
1 TTTATTCAGCTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTTTCACAAACAATA
65477159 CTGGTGCACC
66 CTGGTGCACC
*
65477169 TTTATTCAGTTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTTTCACAAACAATA
1 TTTATTCAGCTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTTTCACAAACAATA
65477234 CTGGTGCACC
66 CTGGTGCACC
65477244 CCAAGGTGAG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (75 bp):
TTTATTCAGCTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTTTCACAAACAATA
CTGGTGCACC
Found at i:65480867 original size:79 final size:81
Alignment explanation
Indices: 65480758--65480940 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
65480748 TACTCGTTCA
* *
65480758 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
65480821 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
65480838 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
65480901 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
65480917 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
65480941 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:65480940 original size:40 final size:40
Alignment explanation
Indices: 65480737--65480940 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
65480727 CGGAATTTAA
** *
65480737 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65480777 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65480817 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65480856 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
65480896 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
65480936 CCGGA
1 CCGGA
65480941 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:65487257 original size:27 final size:26
Alignment explanation
Indices: 65487226--65487309 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
65487216 TGATTCAAAA
* *
65487226 CTATATATTAAGTCCGCACACTCAGTG
1 CTATATATCAACT-CGCACACTCAGTG
* *
65487253 TTATATAATCAACTCGCACACTTAGTG
1 CTATAT-ATCAACTCGCACACTCAGTG
* *
65487280 CTATATAATCAAACTCACACACTTAGTG
1 CTATAT-ATC-AACTCGCACACTCAGTG
65487308 CT
1 CT
65487310 GTACAATTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
27 26 0.53
28 23 0.47
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (26 bp):
CTATATATCAACTCGCACACTCAGTG
Found at i:65487303 original size:28 final size:28
Alignment explanation
Indices: 65487240--65487337 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
65487230 ATATTAAGTC
* *
65487240 CGCACACTCAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
65487267 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
65487295 CACACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
65487324 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65487338 CAATCTCATG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.36
29 18 0.30
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65495271 original size:28 final size:28
Alignment explanation
Indices: 65495208--65495305 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
65495198 ATATTAAGTC
*
65495208 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
65495235 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
65495263 CACACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
65495292 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65495306 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65500669 original size:14 final size:14
Alignment explanation
Indices: 65500650--65500676 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65500640 TTAACATTCA
65500650 GATCTATAATTTCG
1 GATCTATAATTTCG
65500664 GATCTATAATTTC
1 GATCTATAATTTC
65500677 TCACACATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (14 bp):
GATCTATAATTTCG
Found at i:65504002 original size:21 final size:20
Alignment explanation
Indices: 65503974--65504012 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
65503964 CAAAACTTGT
65503974 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
65503994 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
65504013 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:65505412 original size:67 final size:67
Alignment explanation
Indices: 65505273--65505408 Score: 175
Period size: 69 Copynumber: 2.0 Consensus size: 67
65505263 ATTTCATCAT
* ** * *
65505273 CAATTTGGATAGTTTAAATTTCTTTCACACCACCGAACAGCAGCCATTTTAGAAATAAATTTGTC
1 CAATTTGGACAGTTTAAATGCCTTTCACACAACCGAACAGCAGCCATTTTAGAAATAAAATTGTC
65505338 AA
66 AA
* *
65505340 CAATTTGGACAGTTTAAATGCCTTTCAGACACAACTGAACAGTAGCCATTTTA-ACAATAAAATT
1 CAATTTGGACAGTTTAAATGCCTTTC--ACACAACCGAACAGCAGCCATTTTAGA-AATAAAATT
65505404 GTCAA
63 GTCAA
65505409 ATTTCAAACA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
67 23 0.39
68 1 0.02
69 35 0.59
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (67 bp):
CAATTTGGACAGTTTAAATGCCTTTCACACAACCGAACAGCAGCCATTTTAGAAATAAAATTGTC
AA
Found at i:65518809 original size:8 final size:8
Alignment explanation
Indices: 65518796--65518820 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
65518786 TTATCAGCTC
65518796 TTATTATT
1 TTATTATT
65518804 TTATTATT
1 TTATTATT
65518812 TTATTATT
1 TTATTATT
65518820 T
1 T
65518821 CAAATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTATTATT
Found at i:65527327 original size:16 final size:17
Alignment explanation
Indices: 65527306--65527339 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
65527296 AATATTAGGG
*
65527306 GCAAAAGT-TTAATTTT
1 GCAAAAGTATGAATTTT
65527322 GCAAAAGTATGAATTTT
1 GCAAAAGTATGAATTTT
65527339 G
1 G
65527340 GAATGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (17 bp):
GCAAAAGTATGAATTTT
Found at i:65528267 original size:20 final size:20
Alignment explanation
Indices: 65528229--65528267 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65528219 TATGACACCT
**
65528229 ATCCATATAAACAGTATTTC
1 ATCCATATAAACAACATTTC
65528249 ATCCATATAAACAACATTT
1 ATCCATATAAACAACATTT
65528268 ATGCCTGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.33
Consensus pattern (20 bp):
ATCCATATAAACAACATTTC
Found at i:65528487 original size:24 final size:23
Alignment explanation
Indices: 65528417--65528517 Score: 103
Period size: 23 Copynumber: 4.2 Consensus size: 23
65528407 AAGCTTTATT
* *
65528417 GAGCTGAAACGGTAAGCTCTAAC
1 GAGCTGAAACAGTAAGCTCTTAC
* *
65528440 GAGCTAAAACAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCTTAC
*
65528463 GAGCTGAGAACAGTAAACTCTTAC
1 GAGCTGA-AACAGTAAGCTCTTAC
* *
65528487 GAGCTGATATATCGGTAAGCTCATAC
1 GAGCTGA-A-A-CAGTAAGCTCTTAC
65528513 GAGCT
1 GAGCT
65528518 ATGGTGAGTC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
23 25 0.39
24 22 0.34
25 1 0.02
26 16 0.25
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTTAC
Found at i:65528513 original size:26 final size:24
Alignment explanation
Indices: 65528417--65528517 Score: 100
Period size: 24 Copynumber: 4.2 Consensus size: 24
65528407 AAGCTTTATT
*
65528417 GAGCTGA-AACGGTAAGCTC-TAAC
1 GAGCTGAGAACAGTAAGCTCAT-AC
*
65528440 GAGCT-AAAACAGTAAGCTCATAC
1 GAGCTGAGAACAGTAAGCTCATAC
* *
65528463 GAGCTGAGAACAGTAAACTCTTAC
1 GAGCTGAGAACAGTAAGCTCATAC
* *
65528487 GAGCTGATATATCGGTAAGCTCATAC
1 GAGCTGAGA-A-CAGTAAGCTCATAC
65528513 GAGCT
1 GAGCT
65528518 ATGGTGAGTC
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
22 1 0.02
23 23 0.35
24 24 0.37
25 1 0.02
26 16 0.25
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (24 bp):
GAGCTGAGAACAGTAAGCTCATAC
Found at i:65530951 original size:15 final size:15
Alignment explanation
Indices: 65530933--65531011 Score: 58
Period size: 15 Copynumber: 5.3 Consensus size: 15
65530923 AACCGTGTGT
65530933 GACACGTGGCCATGC
1 GACACGTGGCCATGC
* *
65530948 GACA--TGGCCGTGTGT
1 GACACGTGGCC--ATGC
65530963 GACACGTGGCCATGC
1 GACACGTGGCCATGC
* *
65530978 GACA--TGGCCGTGTAT
1 GACACGTGGCCATG--C
65530993 GACACGTGGCCATGC
1 GACACGTGGCCATGC
65531008 GACA
1 GACA
65531012 TGGCCGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
13 12 0.25
15 24 0.50
17 12 0.25
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18
Consensus pattern (15 bp):
GACACGTGGCCATGC
Found at i:65530961 original size:30 final size:30
Alignment explanation
Indices: 65530925--65531022 Score: 187
Period size: 30 Copynumber: 3.3 Consensus size: 30
65530915 TGTGACTCAA
65530925 CCGTGTGTGACACGTGGCCATGCGACATGG
1 CCGTGTGTGACACGTGGCCATGCGACATGG
65530955 CCGTGTGTGACACGTGGCCATGCGACATGG
1 CCGTGTGTGACACGTGGCCATGCGACATGG
*
65530985 CCGTGTATGACACGTGGCCATGCGACATGG
1 CCGTGTGTGACACGTGGCCATGCGACATGG
65531015 CCGTGTGT
1 CCGTGTGT
65531023 CCCCTGTAGG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (30 bp):
CCGTGTGTGACACGTGGCCATGCGACATGG
Found at i:65533255 original size:40 final size:40
Alignment explanation
Indices: 65533200--65533281 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
65533190 GCTACGAATT
* * *
65533200 AACATAAATACACCAAATGATCAATGAACAATCACTTTCA
1 AACATAAATAAACCAAATGATCAATAAAAAATCACTTTCA
65533240 AACATAAATAAACCAAATGATCAATAAAAAATCACTTTCA
1 AACATAAATAAACCAAATGATCAATAAAAAATCACTTTCA
65533280 AA
1 AA
65533282 TTCAACTTCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.55, C:0.20, G:0.04, T:0.22
Consensus pattern (40 bp):
AACATAAATAAACCAAATGATCAATAAAAAATCACTTTCA
Found at i:65533804 original size:14 final size:15
Alignment explanation
Indices: 65533769--65533808 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
65533759 ACTTTCTCTT
65533769 TCTTTTCATTACTTAA
1 TCTTTT-ATTACTTAA
65533785 TCTTTTATTAC-TAA
1 TCTTTTATTACTTAA
*
65533799 TGTTTTATTA
1 TCTTTTATTA
65533809 TACTTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 12 0.52
15 5 0.22
16 6 0.26
ACGTcount: A:0.25, C:0.12, G:0.03, T:0.60
Consensus pattern (15 bp):
TCTTTTATTACTTAA
Found at i:65534206 original size:27 final size:27
Alignment explanation
Indices: 65534176--65534231 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
65534166 ACCTTATCGC
65534176 AAAGAAAGACACCTACGAAACAAAGCA
1 AAAGAAAGACACCTACGAAACAAAGCA
65534203 AAAGAAAGACACCTACGAAACAAAGCA
1 AAAGAAAGACACCTACGAAACAAAGCA
65534230 AA
1 AA
65534232 TGCTTGAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.61, C:0.21, G:0.14, T:0.04
Consensus pattern (27 bp):
AAAGAAAGACACCTACGAAACAAAGCA
Found at i:65534256 original size:23 final size:23
Alignment explanation
Indices: 65534226--65534273 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
65534216 TACGAAACAA
65534226 AGCAAATGCTTGAACAATTTTTT
1 AGCAAATGCTTGAACAATTTTTT
65534249 AGCAAATGCTTGAACAATTTTTT
1 AGCAAATGCTTGAACAATTTTTT
65534272 AG
1 AG
65534274 ATTGAGAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (23 bp):
AGCAAATGCTTGAACAATTTTTT
Found at i:65535227 original size:16 final size:16
Alignment explanation
Indices: 65535208--65535238 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65535198 AACAGAGTTA
65535208 ATTGAAAAAAAAATTT
1 ATTGAAAAAAAAATTT
*
65535224 ATTGGAAAAAAAATT
1 ATTGAAAAAAAAATT
65535239 ACGGTAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (16 bp):
ATTGAAAAAAAAATTT
Found at i:65539109 original size:15 final size:14
Alignment explanation
Indices: 65539084--65539115 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
65539074 TAGTGCAAAA
65539084 TTGATTTTTCTCTT
1 TTGATTTTTCTCTT
65539098 TTGATCTTTTCTCTT
1 TTGAT-TTTTCTCTT
65539113 TTG
1 TTG
65539116 TTAAACCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.06, C:0.16, G:0.09, T:0.69
Consensus pattern (14 bp):
TTGATTTTTCTCTT
Found at i:65539742 original size:20 final size:19
Alignment explanation
Indices: 65539695--65539759 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
65539685 GTAATAAAAT
*
65539695 AAAATAAAAATAGA-TTAG
1 AAAATAAAAATAAATTTAG
65539713 AAAATGTAAAAATAAATTTAAG
1 AAAA--TAAAAATAAATTT-AG
65539735 AAAAT-AAAATAAA-TTAG
1 AAAATAAAAATAAATTTAG
*
65539752 TAAATAAA
1 AAAATAAA
65539760 CTTTTTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
17 6 0.15
18 8 0.20
19 8 0.20
20 10 0.25
21 2 0.05
22 6 0.15
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.25
Consensus pattern (19 bp):
AAAATAAAAATAAATTTAG
Found at i:65548483 original size:10 final size:10
Alignment explanation
Indices: 65548468--65548506 Score: 51
Period size: 10 Copynumber: 3.6 Consensus size: 10
65548458 AATATTATCA
65548468 CTAAATAATT
1 CTAAATAATT
65548478 CTAAATATTATAT
1 CTAAATA--AT-T
65548491 CTAAATAATT
1 CTAAATAATT
65548501 CTAAAT
1 CTAAAT
65548507 TTAAAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 14 0.54
11 2 0.08
12 2 0.08
13 8 0.31
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (10 bp):
CTAAATAATT
Found at i:65548485 original size:23 final size:23
Alignment explanation
Indices: 65548455--65548506 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
65548445 TAGATTTTTC
65548455 CTAAATATTATCA-CTAAATAATT
1 CTAAATATTAT-ATCTAAATAATT
65548478 CTAAATATTATATCTAAATAATT
1 CTAAATATTATATCTAAATAATT
65548501 CTAAAT
1 CTAAAT
65548507 TTAAAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 1 0.04
23 27 0.96
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (23 bp):
CTAAATATTATATCTAAATAATT
Found at i:65560391 original size:484 final size:486
Alignment explanation
Indices: 65559698--65560676 Score: 1590
Period size: 484 Copynumber: 2.0 Consensus size: 486
65559688 AGTAATTTTG
*
65559698 AAAACTAAGTCTAATTTTATTAAAAACTTGTTTATCAAATTTACATATAAGAACCACAACGAAAA
1 AAAACTAAGTCTAATTTTATTAAAAACTTGTTTATCAAATTTACAGATAAGAACCACAACGAAAA
* *
65559763 TTTTTACTAAGACCATATTTTGTTAAAAATCAATATTTCATGTAAATTCGATAAAACATCAATAG
66 TTTTTACTAAAACCATATTTTGTTAAAAATCAATATTTCATATAAATTCGATAAAACATCAATAG
* **
65559828 ACAATTTAAAACCTAAAAAATCAAGTCATATTTTTATCTAAAACTCATTTCCATTATTTAAGCAG
131 ACAATTTAAAACCTAAAAAATCAAATCATATTTTTATCTAAAACTCATTTCCATTATCGAAGCAG
*
65559893 AAAATAGTGATTTTGTCAAGTTTTAAAAGAAACCAAGTTTCATGCGTATTCTTATCAAATACTAA
196 AAAATAGCGATTTTGTCAAGTTTTAAAAGAAACCAAGTTTCATGCGTATTCTTATCAAATACTAA
*
65559958 TTTATGCAGTTTTTAAAACTTAATGTCATGCAATCAACTCGTGCATATCAGAATGAAAAATCCCC
261 TTTATGCAGTTTTAAAAACTTAATGTCATGCAATCAACTCGTGCATATCAGAATGAAAAATCCCC
* *
65560023 AAAGTAAAGTCTCATGCCACAATCCATATTCAAACTTATTACAATCCCAAAAT-AAAAAATATTA
326 AAAGTAAAGTCTCATGCCACAATCCATACTCAAACTTATTACAATACCAAAATAAAAAAATATTA
*
65560087 AGATAAACTTTAATTACTTTAATTTAAAAAGAATTTTGAGAAACTCCTCCAAATATTGTCATCGA
391 AGATAAACTTTAATTACTTTAATTTAAAAAGAATTTTGAGAAACTCCTCCAAATACTGTCATCGA
* *
65560152 ATCCTAACCTCGGGGTTATCTATAAAATCAA
456 ATCCTAACCTCAGGGTTATCTATAAAATAAA
* * * *
65560183 AAAACTAAGTCTAATTTTATTAAAAACTT-TATTCTCAGAA-TTGCAGGTAAGAACCACAATGAA
1 AAAACTAAGTCTAATTTTATTAAAAACTTGT-TTATCA-AATTTACAGATAAGAACCACAACGAA
* *
65560246 AATTTTTACTAAAATCATATTTTGTTAAAAATCAA-ATTTCCTATAAATTCGATAAAACATCAAT
64 AATTTTTACTAAAACCATATTTTGTTAAAAATCAATATTTCATATAAATTCGATAAAACATCAAT
* * *
65560310 AGACAATTTAAAACCTCAAAAATCAAATCATATTTTTGTCTAAAACTCATTTCCATTGTCGAAGC
129 AGACAATTTAAAACCTAAAAAATCAAATCATATTTTTATCTAAAACTCATTTCCATTATCGAAGC
*
65560375 -GAAAAATAGCGATTTTGTCAAGTTTTAATAGAAACCAAGTTTCATGCGTATTCTTATCAAATAC
194 AG-AAAATAGCGATTTTGTCAAGTTTTAAAAGAAACCAAGTTTCATGCGTATTCTTATCAAATAC
* * *
65560439 TAATTTATGCAGTTTTAAAAACTTAATGTCATGCAATCAATTCTTGCATATTAGAATGAAAAATC
258 TAATTTATGCAGTTTTAAAAACTTAATGTCATGCAATCAACTCGTGCATATCAGAATGAAAAATC
* * * *
65560504 TCCAAAGTAAAGTCTCATGCCATAATTCATACTCAAACTTATTACAATATCAAAATAAAAAAAAT
323 CCCAAAGTAAAGTCTCATGCCACAATCCATACTCAAACTTATTACAATACCAAAAT-AAAAAAAT
* * *
65560569 ATTAAGATAAACTTTAATTATTTTAATTTAAAAAGAATTTTGAGAAACTCCTCCAAATGCTGTGA
387 ATTAAGATAAACTTTAATTACTTTAATTTAAAAAGAATTTTGAGAAACTCCTCCAAATACTGTCA
65560634 TCGAATCCTAACCTCAGGGTTATCTATAAAATAAA
452 TCGAATCCTAACCTCAGGGTTATCTATAAAATAAA
65560669 AAAACTAA
1 AAAACTAA
65560677 AAAGAGTGAG
Statistics
Matches: 456, Mismatches: 33, Indels: 9
0.92 0.07 0.02
Matches are distributed among these distances:
483 1 0.00
484 258 0.57
485 86 0.19
486 111 0.24
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.33
Consensus pattern (486 bp):
AAAACTAAGTCTAATTTTATTAAAAACTTGTTTATCAAATTTACAGATAAGAACCACAACGAAAA
TTTTTACTAAAACCATATTTTGTTAAAAATCAATATTTCATATAAATTCGATAAAACATCAATAG
ACAATTTAAAACCTAAAAAATCAAATCATATTTTTATCTAAAACTCATTTCCATTATCGAAGCAG
AAAATAGCGATTTTGTCAAGTTTTAAAAGAAACCAAGTTTCATGCGTATTCTTATCAAATACTAA
TTTATGCAGTTTTAAAAACTTAATGTCATGCAATCAACTCGTGCATATCAGAATGAAAAATCCCC
AAAGTAAAGTCTCATGCCACAATCCATACTCAAACTTATTACAATACCAAAATAAAAAAATATTA
AGATAAACTTTAATTACTTTAATTTAAAAAGAATTTTGAGAAACTCCTCCAAATACTGTCATCGA
ATCCTAACCTCAGGGTTATCTATAAAATAAA
Found at i:65563434 original size:50 final size:50
Alignment explanation
Indices: 65563334--65563657 Score: 325
Period size: 50 Copynumber: 6.7 Consensus size: 50
65563324 GCAATGTGTA
* * *
65563334 CTAGTGTAAGA-CATGTCTGGGACAT-GCATGGGCCAC-A-TTATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAG
* *
65563380 CTAGTGTAAGACCATATCTGGGACATGGCATCGGCCTCGAGATATGAAAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAG
* * *
65563430 CTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CT--TG--ATGTGTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAG
* * * * *
65563475 TTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAC-CGACAGATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATATGAGAG
*
65563525 AC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATATGAGAG
1 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAG
* * ** * *
65563575 -TCAGTGTAAGATCATGTCTGGGACATGGCATC-G-ATCTTGATGTGTGAG
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAG
* *
65563623 CCAGTGTAAGACCATGCCTGGGACATGGCATCGGC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65563658 ATCTTACCCT
Statistics
Matches: 229, Mismatches: 32, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
45 35 0.15
46 11 0.05
47 15 0.07
48 46 0.20
49 6 0.03
50 116 0.51
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (50 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAG
Found at i:65563499 original size:95 final size:94
Alignment explanation
Indices: 65563334--65563657 Score: 320
Period size: 95 Copynumber: 3.4 Consensus size: 94
65563324 GCAATGTGTA
* * *
65563334 CTAGTGTAAGA-CATGTCTGGGACAT-GCATGGGCCACATTATGAGAGCTAGTGTAAGACCATAT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGG-C-C-TTATGAGAGTTAGTGTAAGACCATGT
65563397 CTGGGACATGGCATCGGCCTCGAGATATGAAAG
63 CTGGGACATGGCATCGGCCTCGAGATATG-AAG
* *
65563430 CTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGATGTGTGTTAGTGTAAGACCATGTCT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT-ATGAGAGTTAGTGTAAGACCATGTCT
* * * *
65563494 AGGACATGGCATCAGCAC-CGACAGATGAGAG
65 GGGACATGGCATCGGC-CTCGAGATATGA-AG
* *
65563525 AC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATATGAGAGTCAGTGTAAGATCA
1 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGG-C-C--T-TATGAGAGTTAGTGTAAGACCA
** * *
65563589 TGTCTGGGACATGGCATCGATCTTGATG-TGTG-AG
60 TGTCTGGGACATGGCATCGGCCTCGA-GATATGAAG
* *
65563623 CCAGTGTAAGACCATGCCTGGGACATGGCATCGGC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65563658 ATCTTACCCT
Statistics
Matches: 191, Mismatches: 22, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
94 3 0.02
95 78 0.41
96 13 0.07
97 16 0.08
98 40 0.21
99 1 0.01
100 39 0.20
101 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTATGAGAGTTAGTGTAAGACCATGTCTG
GGACATGGCATCGGCCTCGAGATATGAAG
Found at i:65565496 original size:22 final size:22
Alignment explanation
Indices: 65565465--65565521 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
65565455 TGTTCTGGGA
* *
65565465 ACACAGGCGTGTGCCTGTGCCC
1 ACACGGGCGTGTGCCTATGCCC
* * *
65565487 GCACGGGCGTATCCCTATGCCC
1 ACACGGGCGTGTGCCTATGCCC
*
65565509 ACACGGGTGTGTG
1 ACACGGGCGTGTG
65565522 ACCCTGTTTC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.14, C:0.33, G:0.33, T:0.19
Consensus pattern (22 bp):
ACACGGGCGTGTGCCTATGCCC
Found at i:65568047 original size:25 final size:26
Alignment explanation
Indices: 65567974--65568049 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 26
65567964 ACATATATTC
* *
65567974 TCAAAATTTTACCAAGGATAAAATTA
1 TCAAAATTTTACCAGGGATAAAATCA
*
65568000 TCAAAAATTTTATCGAGGG-TAAAATCA
1 TC-AAAATTTTA-CCAGGGATAAAATCA
*
65568027 TC-AAATTTTACTAGGGATAAAAT
1 TCAAAATTTTACCAGGGATAAAAT
65568050 AGGGATGATA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
24 5 0.12
25 14 0.33
26 2 0.05
27 18 0.42
28 4 0.09
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.32
Consensus pattern (26 bp):
TCAAAATTTTACCAGGGATAAAATCA
Found at i:65579046 original size:40 final size:39
Alignment explanation
Indices: 65578996--65579152 Score: 174
Period size: 39 Copynumber: 4.0 Consensus size: 39
65578986 CAAATCCAAT
* *
65578996 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAACACAAAGCCTGCGGGACTTT-AGCCCGGATATAA
*
65579036 TACCAACACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAACACAAAGCCTGCGGGACTTTAGCCCGGATATAA
* * *
65579075 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAA
1 CACCAACAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
* * * * *
65579114 CACCAGCACGAATGCCTTCAGGAC-TTAGCCTGGATATAA
1 CACCAACAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
65579153 TTCTCCATTA
Statistics
Matches: 107, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
39 72 0.67
40 35 0.33
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (39 bp):
CACCAACACAAAGCCTGCGGGACTTTAGCCCGGATATAA
Found at i:65579103 original size:39 final size:40
Alignment explanation
Indices: 65579013--65579152 Score: 196
Period size: 39 Copynumber: 3.5 Consensus size: 40
65579003 ACAAAGCATG
* * * *
65579013 CGGGACTTTAAGCCCGGATATAATACCAACAC-AAAGCCTG
1 CGGGACTTT-AGCCCGGATATAACACCAGCACGAATGCCTT
65579053 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
65579093 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
65579132 CAGGAC-TTAGCCTGGATATAA
1 CGGGACTTTAGCCCGGATATAA
65579153 TTCTCCATTA
Statistics
Matches: 93, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 72 0.77
40 21 0.23
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (40 bp):
CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:65579678 original size:110 final size:110
Alignment explanation
Indices: 65579485--65579924 Score: 871
Period size: 110 Copynumber: 4.0 Consensus size: 110
65579475 TGTGGATAGG
*
65579485 CTACTCGATTGCTTTCTCCTTTCCCTTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
65579550 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
65579595 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
65579660 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
65579705 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
65579770 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
65579815 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
65579880 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
65579925 AATAGTCACA
Statistics
Matches: 329, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 329 1.00
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.47
Consensus pattern (110 bp):
CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
Found at i:65582848 original size:18 final size:18
Alignment explanation
Indices: 65582825--65582870 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
65582815 TTAACTACCC
65582825 TTACTAATGTTAGGATTA
1 TTACTAATGTTAGGATTA
65582843 TTACTAATGTTAGGATTA
1 TTACTAATGTTAGGATTA
*
65582861 TTACTTATGT
1 TTACTAATGT
65582871 AGGCATCGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (18 bp):
TTACTAATGTTAGGATTA
Found at i:65589121 original size:482 final size:482
Alignment explanation
Indices: 65588260--65589223 Score: 1588
Period size: 482 Copynumber: 2.0 Consensus size: 482
65588250 TTCAAATCTA
* * * *
65588260 AGACCTGATCTGCTAACACTGTTCCCCATGAACTTTGTCTTTCAGAAAGAGGTTCCCGGGCTTGA
1 AGACCTGATCTGCTAACACTATTCCCCATGAAATTTGTCTTTCAGAAAAAAGTTCCCGGGCTTGA
** *
65588325 TTAACAGATAACATGTGGTATTGCCTTACAGTTCATTGATCTAAACACAAGAATCCAACCCCTAT
66 TTAACAGATAACATGTGCCATTGCCTTACAGTTCATTGATCTAAACACAAGAATCCAACCCCCAT
* * * *
65588390 TTTCGTTGGGAACTTGATCTTCATGTAGAATGTTGTGACCACCATCTTTTTCATCCTCATTATTG
131 TTTCATTGGGAACTTGATCTTCATGCAGAATGTTGCGACCACCATCTTTGTCATCCTCATTATTG
* * *
65588455 GTCATCCGAAGAGCGCATTGTATGCCATTGGGTGGTCTACTACGTAGAATTGAATATATTCTGTA
196 GTCATCCGAAGAGAGCATTGTATGCCATTGGGTCGTCTACTACGTAGAATTGAATATATTCTGCA
65588520 GTTGTGTGCTTGCTATCCTCTAAGGTGACTGGTATGATGACCAAACCCTTCATCTCAATAGGATG
261 GTTGTGTGCTTGCTATCCTCTAAGGTGACTGGTATGATGACCAAACCCTTCATCTCAATAGGATG
*
65588585 GTTCGCAAAGTCATACAACGGACTAGCTTTAGATAATGCCTGCTCTTTCGGTCCCATCTTCTGGT
326 GTTCGCAAAGTCATACAACGGACTAGCTTTAGACAATGCCTGCTCTTTCGGTCCCATCTTCTGGT
* * *
65588650 ACACATCCCAAGAAAACACCTTAACTACACTTCCACTGTCTATAAGTATTTTTTTAACTTTGAAA
391 ACACATCCCAAGAAAACACCTCAACTACACTTCCACTATCTATAAGTATTCTTTTAACTTTGAAA
65588715 CCTACAACTGTCGTCGAGACAATTATC
456 CCTACAACTGTCGTCGAGACAATTATC
* * *
65588742 AGACCTGATTTGCTAACACTATTCCTCATGAAATTTGTCTTTCAGAAAAAAGTTCCCTGGCTTGA
1 AGACCTGATCTGCTAACACTATTCCCCATGAAATTTGTCTTTCAGAAAAAAGTTCCCGGGCTTGA
** * ** *
65588807 TTAACAGATAACATGTGCCATTGCCTTGTAGTTCGTTGATCTAAATGCAAGAATCTAACCCCCAT
66 TTAACAGATAACATGTGCCATTGCCTTACAGTTCATTGATCTAAACACAAGAATCCAACCCCCAT
*
65588872 TTTTATTGGGAACTTGATCTTCATGCAGAATGTTGCGACCACCATCTTTGTCATCCTCATTATTG
131 TTTCATTGGGAACTTGATCTTCATGCAGAATGTTGCGACCACCATCTTTGTCATCCTCATTATTG
* **
65588937 GTCGTCCGAAGAGAGCATTGTATGTTATTGGGTCGTCTACTACGTAGAATTGAATATATTCTGCA
196 GTCATCCGAAGAGAGCATTGTATGCCATTGGGTCGTCTACTACGTAGAATTGAATATATTCTGCA
*
65589002 GTTGTGTGCTTGCTATCCTCTAAGGTGACTGGTATGATGACCAAACCTTTCATCTCAATAGGATG
261 GTTGTGTGCTTGCTATCCTCTAAGGTGACTGGTATGATGACCAAACCCTTCATCTCAATAGGATG
* *
65589067 GTTCGCAAAGTCATACAACAGG-CTAGCTTTAGACATTGCCTGCTTTTTCGGTCCCATCTTCTGG
326 GTTCGCAAAGTCATACAAC-GGACTAGCTTTAGACAATGCCTGCTCTTTCGGTCCCATCTTCTGG
* *
65589131 TACACATCCCAAGACAACACCTCAACTATACTTCCACTATCTATAAGTATTCTTTTAACTTTGAA
390 TACACATCCCAAGAAAACACCTCAACTACACTTCCACTATCTATAAGTATTCTTTTAACTTTGAA
65589196 ACCTACAACTGTCGTCGAGACAATTATC
455 ACCTACAACTGTCGTCGAGACAATTATC
65589224 GAGTCATTAC
Statistics
Matches: 445, Mismatches: 36, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
482 443 1.00
483 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (482 bp):
AGACCTGATCTGCTAACACTATTCCCCATGAAATTTGTCTTTCAGAAAAAAGTTCCCGGGCTTGA
TTAACAGATAACATGTGCCATTGCCTTACAGTTCATTGATCTAAACACAAGAATCCAACCCCCAT
TTTCATTGGGAACTTGATCTTCATGCAGAATGTTGCGACCACCATCTTTGTCATCCTCATTATTG
GTCATCCGAAGAGAGCATTGTATGCCATTGGGTCGTCTACTACGTAGAATTGAATATATTCTGCA
GTTGTGTGCTTGCTATCCTCTAAGGTGACTGGTATGATGACCAAACCCTTCATCTCAATAGGATG
GTTCGCAAAGTCATACAACGGACTAGCTTTAGACAATGCCTGCTCTTTCGGTCCCATCTTCTGGT
ACACATCCCAAGAAAACACCTCAACTACACTTCCACTATCTATAAGTATTCTTTTAACTTTGAAA
CCTACAACTGTCGTCGAGACAATTATC
Found at i:65590653 original size:41 final size:41
Alignment explanation
Indices: 65590596--65590677 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
65590586 TAATGCAACT
*
65590596 TTCTTCTTAACTCCTTGTTTTGCTTCAGCAGCTCCTGCTGA
1 TTCTTCTTAACTCCTTGTTTTGCTTCAGCAGCCCCTGCTGA
65590637 TTCTTCTTAACTCCTTGTTTTGCTTCAGCAGCCCCTGCTGA
1 TTCTTCTTAACTCCTTGTTTTGCTTCAGCAGCCCCTGCTGA
65590678 AGAGCTTGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.12, C:0.30, G:0.15, T:0.43
Consensus pattern (41 bp):
TTCTTCTTAACTCCTTGTTTTGCTTCAGCAGCCCCTGCTGA
Found at i:65590662 original size:20 final size:20
Alignment explanation
Indices: 65590598--65590662 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
65590588 ATGCAACTTT
65590598 CTTCTTAACTCCTTGTTTTG
1 CTTCTTAACTCCTTGTTTTG
** * *
65590618 CTTCAGCAGCTCC-TGCTGATT-
1 CTTC-TTAACTCCTTG-T-TTTG
65590639 CTTCTTAACTCCTTGTTTTG
1 CTTCTTAACTCCTTGTTTTG
65590659 CTTC
1 CTTC
65590663 AGCAGCCCCT
Statistics
Matches: 32, Mismatches: 8, Indels: 10
0.64 0.16 0.20
Matches are distributed among these distances:
19 2 0.06
20 16 0.50
21 12 0.38
22 2 0.06
ACGTcount: A:0.11, C:0.29, G:0.12, T:0.48
Consensus pattern (20 bp):
CTTCTTAACTCCTTGTTTTG
Found at i:65592177 original size:17 final size:17
Alignment explanation
Indices: 65592157--65592192 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
65592147 AAAAATAATT
* *
65592157 TTTTAATTTTTTAACAA
1 TTTTAAATTTTTAAAAA
65592174 TTTTAAATTTTTAAAAA
1 TTTTAAATTTTTAAAAA
65592191 TT
1 TT
65592193 AATTAAATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTAAATTTTTAAAAA
Found at i:65592190 original size:40 final size:39
Alignment explanation
Indices: 65592098--65592196 Score: 101
Period size: 41 Copynumber: 2.5 Consensus size: 39
65592088 AATATTTAAA
* **
65592098 AAATGTTTTAAAATA-AATTTTATACTTTTTAATGATTTT
1 AAAT-TTTTAAAAAATAATTTTATACTTTTTAACAATTTT
* * *
65592137 AATTTTTTAAAAAAATAATTTTTTAATTTTTTAACAATTTT
1 AAATTTTT-AAAAAATAATTTTAT-ACTTTTTAACAATTTT
*
65592178 AAATTTTTAAAAATTAATT
1 AAATTTTTAAAAAATAATT
65592197 AAATGCTGAA
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
38 4 0.08
39 8 0.16
40 17 0.35
41 20 0.41
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (39 bp):
AAATTTTTAAAAAATAATTTTATACTTTTTAACAATTTT
Found at i:65596631 original size:13 final size:13
Alignment explanation
Indices: 65596613--65596637 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65596603 AAGGGACCTC
65596613 CTTTTTTTTTTTT
1 CTTTTTTTTTTTT
65596626 CTTTTTTTTTTT
1 CTTTTTTTTTTT
65596638 CTGTAAAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
CTTTTTTTTTTTT
Found at i:65596632 original size:12 final size:12
Alignment explanation
Indices: 65596615--65596639 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65596605 GGGACCTCCT
65596615 TTTTTTTTTTTC
1 TTTTTTTTTTTC
65596627 TTTTTTTTTTTC
1 TTTTTTTTTTTC
65596639 T
1 T
65596640 GTAAAGTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:65597192 original size:15 final size:16
Alignment explanation
Indices: 65597172--65597208 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
65597162 CTTGCTTGAA
65597172 TTTAAATAAT-TTTTT-
1 TTTAAA-AATATTTTTG
65597187 TTTAAAAATATTTTTG
1 TTTAAAAATATTTTTG
65597203 TTTAAA
1 TTTAAA
65597209 GTTAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 3 0.15
15 11 0.55
16 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TTTAAAAATATTTTTG
Found at i:65597201 original size:16 final size:17
Alignment explanation
Indices: 65597175--65597208 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
65597165 GCTTGAATTT
*
65597175 AAATAATTTTTTTTTAA
1 AAATAATTTTTGTTTAA
65597192 AAAT-ATTTTTGTTTAA
1 AAATAATTTTTGTTTAA
65597208 A
1 A
65597209 GTTAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
AAATAATTTTTGTTTAA
Found at i:65606889 original size:23 final size:23
Alignment explanation
Indices: 65606859--65606905 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
65606849 GCTTGTAATC
65606859 GAGCATTTTATGCTATTTTCATA
1 GAGCATTTTATGCTATTTTCATA
65606882 GAGCATTTTATGCTATTTTCATA
1 GAGCATTTTATGCTATTTTCATA
65606905 G
1 G
65606906 TTTTATCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.47
Consensus pattern (23 bp):
GAGCATTTTATGCTATTTTCATA
Found at i:65609756 original size:47 final size:47
Alignment explanation
Indices: 65609687--65610517 Score: 1644
Period size: 47 Copynumber: 17.7 Consensus size: 47
65609677 GGATGGTTGA
*
65609687 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65609734 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65609781 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65609828 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65609875 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65609922 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65609969 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610016 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610063 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610110 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610157 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610204 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610251 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610298 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610345 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610392 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
*
65610439 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
65610486 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTC
65610518 ACTTATGGAT
Statistics
Matches: 782, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 782 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (47 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAGTGTAACTAG
Found at i:65615280 original size:26 final size:26
Alignment explanation
Indices: 65615251--65615300 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
65615241 TCTCATCCCT
*
65615251 ATTTTACCCCTAGTAAAATTTTGACG
1 ATTTTACCCATAGTAAAATTTTGACG
*
65615277 ATTTTACCCATGGTAAAATTTTGA
1 ATTTTACCCATAGTAAAATTTTGA
65615301 AAATATGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (26 bp):
ATTTTACCCATAGTAAAATTTTGACG
Found at i:65618038 original size:15 final size:16
Alignment explanation
Indices: 65618006--65618039 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
65617996 ATTTCATCTC
*
65618006 ATTTGCATTTAGGTTA
1 ATTTACATTTAGGTTA
65618022 ATTTACATTTA-GTTA
1 ATTTACATTTAGGTTA
65618037 ATT
1 ATT
65618040 AATTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (16 bp):
ATTTACATTTAGGTTA
Found at i:65650767 original size:21 final size:21
Alignment explanation
Indices: 65650724--65650767 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
65650714 TTTTTTTCTT
*
65650724 AAAATCAAAATTTTCTTTTAA
1 AAAATCAAAATTTTCTTTAAA
*
65650745 AAAATCACAACTTTTC-TTAAA
1 AAAATCA-AAATTTTCTTTAAA
65650766 AA
1 AA
65650768 TCAAAGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAATCAAAATTTTCTTTAAA
Found at i:65650777 original size:19 final size:18
Alignment explanation
Indices: 65650717--65650777 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
65650707 CGAAATTTTT
*
65650717 TTTTCTT-AAAATCAAAA
1 TTTTCTTAAAAATCAAAC
65650734 TTTTCTTTTAAAAAATCACAAC
1 TTTTC--TT-AAAAATCA-AAC
65650756 TTTTCTTAAAAATCAAAGC
1 TTTTCTTAAAAATCAAA-C
65650775 TTT
1 TTT
65650778 ATTTCAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
17 5 0.14
18 2 0.05
19 14 0.38
20 2 0.05
21 7 0.19
22 7 0.19
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.43
Consensus pattern (18 bp):
TTTTCTTAAAAATCAAAC
Found at i:65651024 original size:147 final size:147
Alignment explanation
Indices: 65650746--65651033 Score: 436
Period size: 147 Copynumber: 2.0 Consensus size: 147
65650736 TTCTTTTAAA
* *
65650746 AAATCACAACTTTTCTTAAAAATCAAAGCTTTATTTCAAAATAGTTGAAAAATATCAAAACTTTG
1 AAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTG
*
65650811 TTTTAAAATCTTAAACTTTTCCAGTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTAAA
66 TTTTAAAATCTTAAAATTTTCCAGTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTAAA
65650876 CTATCTCTTTTTTTTTT
131 CTATCTCTTTTTTTTTT
* * * *
65650893 AAATCACTATTTTTCTTAAAAATCAAATATTTATTTCGAAATAGTTGAAAAAGATCAAAACTTTG
1 AAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTG
* ** *
65650958 TTTTCAAAT-TTAAAATTTTCCTTTAATATGACTTGAAAAAACATATTTTTATTTTAAAAATC-A
66 TTTTAAAATCTTAAAATTTTCCAGTAAAATGAC-T-AAAAAACATATTTTTATTTTAAAAATCTA
*
65651021 AACTTTCTCTTTT
129 AACTATCTCTTTT
65651034 AAAAAAAATG
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
146 19 0.15
147 81 0.64
148 27 0.21
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.42
Consensus pattern (147 bp):
AAATCACAACTTTTCTTAAAAATCAAAGATTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTG
TTTTAAAATCTTAAAATTTTCCAGTAAAATGACTAAAAAACATATTTTTATTTTAAAAATCTAAA
CTATCTCTTTTTTTTTT
Found at i:65651647 original size:92 final size:92
Alignment explanation
Indices: 65651490--65651672 Score: 348
Period size: 92 Copynumber: 2.0 Consensus size: 92
65651480 GGTGTCTACA
65651490 TGGGTTATAGAAATACAAACCATAAACTCCGAGCTATTCTTCAACAACCTTGTCTTTTCCTTTCT
1 TGGGTTATAGAAATACAAACCATAAACTCCGAGCTATTCTTCAACAACCTTGTCTTTTCCTTTCT
65651555 TTCTTAACTATCATGGGTCGACGTTAC
66 TTCTTAACTATCATGGGTCGACGTTAC
65651582 TGGGTTATAGAAATACAAACCATAAACTCCGAGCTATTCTTCAACAACCTTGTCTTTTCCTTTCT
1 TGGGTTATAGAAATACAAACCATAAACTCCGAGCTATTCTTCAACAACCTTGTCTTTTCCTTTCT
* *
65651647 TTCTTAAGTATCCTGGGTCGACGTTA
66 TTCTTAACTATCATGGGTCGACGTTA
65651673 GCTACAAATT
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 89 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (92 bp):
TGGGTTATAGAAATACAAACCATAAACTCCGAGCTATTCTTCAACAACCTTGTCTTTTCCTTTCT
TTCTTAACTATCATGGGTCGACGTTAC
Found at i:65651809 original size:19 final size:19
Alignment explanation
Indices: 65651785--65651825 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
65651775 AATCGGGACT
65651785 ATCATAATTTTCACATGTA
1 ATCATAATTTTCACATGTA
65651804 ATCATAATTTTCACATGTA
1 ATCATAATTTTCACATGTA
65651823 ATC
1 ATC
65651826 CCCAAAACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.41
Consensus pattern (19 bp):
ATCATAATTTTCACATGTA
Found at i:65653337 original size:27 final size:27
Alignment explanation
Indices: 65653299--65653352 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
65653289 AAACATAAAC
*
65653299 TCATTCTTTCAATTATTTTTTAGTAAT
1 TCATTCTTTCAATCATTTTTTAGTAAT
65653326 TCATTCTTTCAATCATTTTTTAGTAAT
1 TCATTCTTTCAATCATTTTTTAGTAAT
65653353 CCATGTACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.13, G:0.04, T:0.57
Consensus pattern (27 bp):
TCATTCTTTCAATCATTTTTTAGTAAT
Found at i:65653399 original size:13 final size:13
Alignment explanation
Indices: 65653374--65653406 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
65653364 TGTAAATGTA
65653374 TCATTTCTCATTTC
1 TCATTT-TCATTTC
65653388 TCATTTTCATTTC
1 TCATTTTCATTTC
65653401 T-ATTTT
1 TCATTTT
65653407 GAGAAACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 8 0.42
14 6 0.32
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (13 bp):
TCATTTTCATTTC
Found at i:65653405 original size:6 final size:7
Alignment explanation
Indices: 65653374--65653405 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
65653364 TGTAAATGTA
65653374 TCATTTC
1 TCATTTC
65653381 TCATTTC
1 TCATTTC
65653388 TCATTT-
1 TCATTTC
65653394 TCATTTC
1 TCATTTC
65653401 T-ATTT
1 TCATTT
65653406 TGAGAAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 10 0.42
7 14 0.58
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (7 bp):
TCATTTC
Found at i:65654680 original size:52 final size:52
Alignment explanation
Indices: 65654615--65654715 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
65654605 TCTTCTCCTC
* *
65654615 TACCTGTGGTTTTTTCCTGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
1 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
*
65654667 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACGTAAAATTTTGTGTGTT
1 TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTT
65654716 TTTCTTCTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (52 bp):
TACCCGTGGTTTTTTCCCGAAAGGGTTTCCACATAAAATTTTGTGTGTTCTT
Found at i:65655363 original size:45 final size:45
Alignment explanation
Indices: 65655314--65655622 Score: 519
Period size: 45 Copynumber: 6.9 Consensus size: 45
65655304 TCGGCCATGG
* * * *
65655314 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
65655359 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
65655404 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
65655449 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
*
65655494 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
*
65655539 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
* * * **
65655584 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
65655623 TCCACCTCTT
Statistics
Matches: 254, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 254 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
Found at i:65655757 original size:16 final size:16
Alignment explanation
Indices: 65655736--65655767 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
65655726 CATTCTGCAT
65655736 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
65655752 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
65655768 AAACACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:65658500 original size:21 final size:21
Alignment explanation
Indices: 65658476--65658537 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 21
65658466 ACTTAAAATG
*
65658476 AATTTCAATCACTTTTTTTTT
1 AATTTCAATCATTTTTTTTTT
*
65658497 AATTCCAA--ATTTTTTTTTT
1 AATTTCAATCATTTTTTTTTT
65658516 GAATTTC--TC-TTTTTTTTTT
1 -AATTTCAATCATTTTTTTTTT
65658535 AAT
1 AAT
65658538 ACCGAATACA
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
18 3 0.09
19 20 0.57
20 5 0.14
21 7 0.20
ACGTcount: A:0.23, C:0.11, G:0.02, T:0.65
Consensus pattern (21 bp):
AATTTCAATCATTTTTTTTTT
Found at i:65658781 original size:67 final size:67
Alignment explanation
Indices: 65658673--65658839 Score: 334
Period size: 67 Copynumber: 2.5 Consensus size: 67
65658663 TCCAGACTCT
65658673 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAATTTTTTTTTTT
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAATTTTTTTTTTT
65658738 GA
66 GA
65658740 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAATTTTTTTTTTT
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAATTTTTTTTTTT
65658805 GA
66 GA
65658807 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTC
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTC
65658840 NATAAAAATA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 100 1.00
ACGTcount: A:0.14, C:0.21, G:0.16, T:0.50
Consensus pattern (67 bp):
TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAATTTTTTTTTTT
GA
Found at i:65663135 original size:60 final size:60
Alignment explanation
Indices: 65663035--65663173 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 60
65663025 AACTGTGTTA
* * * *
65663035 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTGATACTG
1 ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGACCCAGATTAATACTG
* * * *
65663095 ATATGGGCTAGGCCCAGTATAT-TCTGATATTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATATCTC-GA-ATTGTAATAGGGCTACGACCCAGATTAATACTG
65663155 ATATGGGCTAAGGCCCAGT
1 ATATGGGCT-AGGCCCAGT
65663174 TAACTCTGAT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 2 0.03
60 51 0.75
61 15 0.22
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGACCCAGATTAATACTG
Found at i:65666829 original size:150 final size:150
Alignment explanation
Indices: 65666558--65666858 Score: 593
Period size: 150 Copynumber: 2.0 Consensus size: 150
65666548 CATGTGTAAA
*
65666558 TAATGTATCATAATGGTTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTA
1 TAATGTAGCATAATGGTTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTA
65666623 TGAAATGTATGCTTTGTGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATAT
66 TGAAATGTATGCTTTGTGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATAT
65666688 AATTGTTACCGAGTATTGAT
131 AATTGTTACCGAGTATTGAT
65666708 TAATGTAGCATAATGGTTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTA
1 TAATGTAGCATAATGGTTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTA
65666773 TGAAATGTATGCTTTGTGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATAT
66 TGAAATGTATGCTTTGTGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATAT
65666838 AATTGTTACCGAGTATTGAT
131 AATTGTTACCGAGTATTGAT
65666858 T
1 T
65666859 TCGGCATTCT
Statistics
Matches: 150, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.47
Consensus pattern (150 bp):
TAATGTAGCATAATGGTTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTA
TGAAATGTATGCTTTGTGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATAT
AATTGTTACCGAGTATTGAT
Done.