Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 201 of 276
Found at i:66758592 original size:23 final size:22
Alignment explanation
Indices: 66758566--66758616 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
66758556 TCATGTTTTT
66758566 TATATAT-GTATATATCTTTAATG
1 TATATATAG-ATATATCTTT-ATG
*
66758589 TATATATAGGTATATCTTTATG
1 TATATATAGATATATCTTTATG
66758611 TA-ATAT
1 TATATAT
66758617 TAGTATTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 4 0.15
22 5 0.19
23 16 0.62
24 1 0.04
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (22 bp):
TATATATAGATATATCTTTATG
Found at i:66758715 original size:21 final size:20
Alignment explanation
Indices: 66758667--66758715 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
66758657 TAATTATGTA
* *
66758667 TATATATTATGTAAATGTTT
1 TATATATTATATAAACGTTT
*
66758687 TA-ATATTATATATACGTTTT
1 TATATATTATATAAACG-TTT
66758707 TATATATTA
1 TATATATTA
66758716 CGAGTATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 11 0.46
20 7 0.29
21 6 0.25
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (20 bp):
TATATATTATATAAACGTTT
Found at i:66771333 original size:160 final size:159
Alignment explanation
Indices: 66771141--66771795 Score: 660
Period size: 160 Copynumber: 4.0 Consensus size: 159
66771131 GACGTTGATG
*
66771141 TATTTTT-AATTTCTGTCTTTCAAAAAAATCAACTCATACTGCAAGAGGTGAGTTGAGCCTC-GG
1 TATTTTTAAATTTCTG--TTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG
*
66771204 CTCACATGCCGAGGTATTTTCAGTTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGT
62 ---ACATGCCGAGGTATTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGT
* * *
66771269 TGAGTCTCGAGGCAC-TCT-GAGGTATTTTCAATTTT
124 TGAGCCTCG-GGCACATGTCGAGGTATTTTCAATTTC
* * * *
66771304 TATTTTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCAC
1 TATTTTTAAATTTCTGTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG--AC
* * * *
66771369 ATGTCGAGGTATTTTTAAATTCTGTTTTTCAAATTCTGTTTCAAAAATCAACTCATATTGTGAGA
64 ATGCCGAGGTATTTTCAATTTCTG---------TT-TG--TCAAAAATCAACTCATATTGCGAGA
* * *
66771434 GGTGAGTTGAGCCTTGGCTCACATGTCGAGGTATTTTCAGTTTC
117 GGTGAGTTGAGCCTCGG-GCACATGTCGAGGTATTTTCAATTTC
* * *
66771478 TGTTTTCTCAAATTTCCGTTTGTCAAAAATCAACTCATATTG-AGAGAGGTGAGTTGAGCCTCAA
1 TATTTT-T-AAATTTCTG-TT-TCAAAAATCAACTCATATTGCA-AGAGGTGAGTTGAGCCTCAG
** * *
66771542 GACATGTTGAGGTATTTTCAATTTATG-TT-TCAAAAATCAACTCATATTGCGAGAAGTGAGTTG
61 GACATGCCGAGGTATTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
**
66771605 AGCCTCGGGTCACATGTCGAGGTATTTTCAAAATC
126 AGCCTCGGG-CACATGTCGAGGTATTTTCAATTTC
* *
66771640 TATTTTTCAAA-TTCTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TATTTTT-AAATTTCTGTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACA
* * * ** *
66771704 CGCTGATGTATTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAATAAGTTGAGCC
65 TGCCGAGGTATTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
66771769 TCGGGTCATATATCGAGGTATTTTCAA
130 TCGGG-CACATGTCGAGGTATTTTCAA
66771796 AAGCTACTTT
Statistics
Matches: 420, Mismatches: 46, Indels: 55
0.81 0.09 0.11
Matches are distributed among these distances:
158 61 0.15
159 4 0.01
160 124 0.30
161 7 0.02
162 70 0.17
163 7 0.02
164 7 0.02
165 1 0.00
166 1 0.00
169 2 0.00
170 2 0.00
171 1 0.00
172 41 0.10
173 2 0.00
174 20 0.05
175 1 0.00
176 28 0.07
177 2 0.00
178 39 0.09
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (159 bp):
TATTTTTAAATTTCTGTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAT
GCCGAGGTATTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CGGGCACATGTCGAGGTATTTTCAATTTC
Found at i:66771402 original size:14 final size:13
Alignment explanation
Indices: 66771380--66771409 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
66771370 TGTCGAGGTA
66771380 TTTTTAAATTCTG
1 TTTTTAAATTCTG
66771393 TTTTTCAAATTCTG
1 TTTTT-AAATTCTG
66771407 TTT
1 TTT
66771410 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.20, C:0.10, G:0.07, T:0.63
Consensus pattern (13 bp):
TTTTTAAATTCTG
Found at i:66771425 original size:87 final size:89
Alignment explanation
Indices: 66771228--66771571 Score: 420
Period size: 87 Copynumber: 3.9 Consensus size: 89
66771218 TATTTTCAGT
* *
66771228 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGAGG-CAC-TCT-GAG
1 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GGCCACATGTCGAG
* * * *
66771290 GTATTTTCAATTTTTATTTTTTAAT
65 GTATTTTCAATTTCTGTTTTTCAAA
*
66771315 TTATG-TT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACATGTCGAGG
1 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACATGTCGAGG
* *
66771378 TATTTTTAAATTCTGTTTTTCAAA
66 TATTTTCAATTTCTGTTTTTCAAA
* *
66771402 TTCTG-TT-TCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGGCTCACATGTCGAG
1 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGC-CACATGTCGAG
*
66771464 GTATTTTCAGTTTCTGTTTTCTCAAA
65 GTATTTTCAATTTCTGTTTT-TCAAA
* * ** *
66771490 TTTCCGTTTGTCAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAAG--ACATGTTGAG
1 -TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACATGTCGAG
*
66771553 GTATTTTCAATTTATGTTT
65 GTATTTTCAATTTCTGTTT
66771572 CAAAAATCAA
Statistics
Matches: 226, Mismatches: 22, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
84 2 0.01
85 43 0.19
86 7 0.03
87 98 0.43
88 5 0.02
89 30 0.13
90 2 0.01
91 38 0.17
92 1 0.00
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.38
Consensus pattern (89 bp):
TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACATGTCGAGG
TATTTTCAATTTCTGTTTTTCAAA
Found at i:66771658 original size:87 final size:85
Alignment explanation
Indices: 66771554--66771849 Score: 314
Period size: 87 Copynumber: 3.6 Consensus size: 85
66771544 CATGTTGAGG
*
66771554 TATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACA
1 TATTTTCAAATTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACA
66771619 TGTCGAGGTATTTTCAAAATC
66 TGTCGAGGTATTTTCAAAA-C
* *
66771640 TATTTTTCAAATTCTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG--AC
1 TA-TTTTCAAATTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCAC
* *
66771703 ACG-CTGATGTATTTTC---A-
65 ATGTC-GAGGTATTTTCAAAAC
** * * *
66771720 -A-TTTC-TGTT-TG--TCAAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCGGGTCATA
1 TATTTTCAAATTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACA
*
66771779 TATCGAGGTATTTTCAAAAGC
66 TGTCGAGGTATTTTCAAAA-C
* *
66771800 TACTTTTCAAATTAAGTTTCAAAAAGACCAACTCATATTGCGAG-AGTGAG
1 TA-TTTTCAAATTATGTTTC-AAAA-ATCAACTCATATTGCGAGAAGTGAG
66771850 CTCAAGATCA
Statistics
Matches: 171, Mismatches: 20, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
73 40 0.23
75 14 0.08
76 3 0.02
77 4 0.02
78 1 0.01
79 1 0.01
81 1 0.01
82 1 0.01
83 4 0.02
84 3 0.02
85 15 0.09
86 2 0.01
87 57 0.33
88 8 0.05
89 17 0.10
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (85 bp):
TATTTTCAAATTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACA
TGTCGAGGTATTTTCAAAAC
Found at i:66771796 original size:160 final size:158
Alignment explanation
Indices: 66771394--66771849 Score: 599
Period size: 162 Copynumber: 2.8 Consensus size: 158
66771384 TAAATTCTGT
* * * * *
66771394 TTTTCAAATTCTGTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTCACATG
1 TTTTCAATTTCTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATG
*** * * *
66771459 TCGAGGTATTTTCAGTTTCTGTTTTCTCAAATTTCCGTTTGTCAAAAATCAACTCATATTGAGAG
66 TCGAGGTATTTTCAAAATCTATTTT-TCAAA-TTCAG-TT-TCAAAAATCAACTCATATTGCGAG
* * *
66771524 AGGTGAGTTGAGCCTCAAGACATGTTGAGGTA
127 AAGTGAGTTGAGCCTCAAGACACGCTGAGGTA
*
66771556 TTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATG
1 TTTTCAATTTCTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATG
*
66771621 TCGAGGTATTTTCAAAATCTATTTTTCAAATTCTGTTTCAAAAATCAACTCATATTGCGAGAAGT
66 TCGAGGTATTTTCAAAATCTATTTTTCAAATTCAGTTTCAAAAATCAACTCATATTGCGAGAAGT
* *
66771686 GAGTTGAGCCTCAGGACACGCTGATGTA
131 GAGTTGAGCCTCAAGACACGCTGAGGTA
* * *
66771714 TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCGGGTCATA
1 TTTTCAATTTCTG-TT-TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACA
* * * * *
66771779 TATCGAGGTATTTTCAAAAGCTACTTTTCAAATTAAGTTTCAAAAAGACCAACTCATATTGCGAG
64 TGTCGAGGTATTTTCAAAATCTATTTTTCAAATTCAGTTTC-AAAA-ATCAACTCATATTGCGAG
66771844 -AGTGAG
127 AAGTGAG
66771850 CTCAAGATCA
Statistics
Matches: 263, Mismatches: 27, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
158 62 0.24
159 4 0.02
160 85 0.32
161 15 0.06
162 97 0.37
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (158 bp):
TTTTCAATTTCTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATG
TCGAGGTATTTTCAAAATCTATTTTTCAAATTCAGTTTCAAAAATCAACTCATATTGCGAGAAGT
GAGTTGAGCCTCAAGACACGCTGAGGTA
Found at i:66772526 original size:15 final size:15
Alignment explanation
Indices: 66772506--66772535 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
66772496 CCCTAATCAG
66772506 CCCCCACTTGCCTTC
1 CCCCCACTTGCCTTC
66772521 CCCCCACTTGCCTTC
1 CCCCCACTTGCCTTC
66772536 TGCCGACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.60, G:0.07, T:0.27
Consensus pattern (15 bp):
CCCCCACTTGCCTTC
Found at i:66777221 original size:46 final size:46
Alignment explanation
Indices: 66777146--66777327 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
66777136 TTATCTTCGA
* * * *
66777146 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTC-ATTTCATGT
* *
66777192 CATGTTGCCATGGTATCATTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
66777238 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
66777284 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
66777328 TTCAGAGAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 118 0.97
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:66777658 original size:24 final size:24
Alignment explanation
Indices: 66777631--66777832 Score: 87
Period size: 23 Copynumber: 8.5 Consensus size: 24
66777621 TTTAACGGAG
*
66777631 AGCTCATAAAGAGCCATATCGGGA
1 AGCTCACAAAGAGCCATATCGGGA
** * *
66777655 AGCT-A-ATCCGAGCTATAACGGGA
1 AGCTCACA-AAGAGCCATATCGGGA
* * * * *
66777678 AACTCA-ATAGAGCCGAAATCAGGT
1 AGCTCACAAAGAGCC-ATATCGGGA
* * *
66777702 AGTTCACAAAGAACCATATCGTGA
1 AGCTCACAAAGAGCCATATCGGGA
*
66777726 AGCTCACGAAGAGCC-TATCGGGA
1 AGCTCACAAAGAGCCATATCGGGA
* ** *
66777749 AGCT-TCGGATAGCCATATAACGGGA
1 AGCTCACAAAGAGCCATAT--CGGGA
* **
66777774 AGTTCA-AGCGAG-CACTATCGGGA
1 AGCTCACAAAGAGCCA-TATCGGGA
* *
66777797 GGCTCACAAAGAGCC-TATTGGGA
1 AGCTCACAAAGAGCCATATCGGGA
*
66777820 AGCTCACGAAGAG
1 AGCTCACAAAGAG
66777833 TTGTATTTCG
Statistics
Matches: 128, Mismatches: 39, Indels: 23
0.67 0.21 0.12
Matches are distributed among these distances:
22 8 0.06
23 61 0.48
24 38 0.30
25 21 0.16
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (24 bp):
AGCTCACAAAGAGCCATATCGGGA
Found at i:66777750 original size:23 final size:23
Alignment explanation
Indices: 66777718--66777832 Score: 90
Period size: 23 Copynumber: 4.9 Consensus size: 23
66777708 CAAAGAACCA
*
66777718 TATCGTGAAGCTCACGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
66777741 TATCGGGAAGCT-TCGGATAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
66777763 ATATAACGGGAAGTTCAAG-CGAGCAC
1 -TAT--CGGGAAGCTCACGAAGAGC-C
* *
66777789 TATCGGGAGGCTCACAAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
*
66777812 TATTGGGAAGCTCACGAAGAG
1 TATCGGGAAGCTCACGAAGAG
66777833 TTGTATTTCG
Statistics
Matches: 69, Mismatches: 17, Indels: 12
0.70 0.17 0.12
Matches are distributed among these distances:
22 7 0.10
23 42 0.61
24 4 0.06
25 14 0.20
26 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.30, T:0.17
Consensus pattern (23 bp):
TATCGGGAAGCTCACGAAGAGCC
Found at i:66779960 original size:18 final size:18
Alignment explanation
Indices: 66779912--66779960 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
66779902 ATAATATAAT
66779912 TATTTAATTAATAAATATC
1 TATTTAA-TAATAAATATC
*
66779931 TTTTATAAAATAATAAATATC
1 TATT-T--AATAATAAATATC
66779952 TATTTAATA
1 TATTTAATA
66779961 TCTAATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 2 0.08
21 14 0.56
22 2 0.08
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTTAATAATAAATATC
Found at i:66780025 original size:24 final size:25
Alignment explanation
Indices: 66779998--66780044 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
66779988 ATTTTTATCC
*
66779998 ATACACTTGTA-TATTTTATTTACT
1 ATACACTTGTACTAATTTATTTACT
*
66780022 ATACATTTGTACTAATTTATTTA
1 ATACACTTGTACTAATTTATTTA
66780045 TCATATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.32, C:0.11, G:0.04, T:0.53
Consensus pattern (25 bp):
ATACACTTGTACTAATTTATTTACT
Found at i:66781590 original size:51 final size:51
Alignment explanation
Indices: 66781514--66781631 Score: 182
Period size: 51 Copynumber: 2.3 Consensus size: 51
66781504 ACACTGATCA
* *
66781514 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
* *
66781565 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTAT
1 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
* *
66781616 CACTTGTCACTGATCA
1 CATTTGTCACTTATCA
66781632 GAAGTACTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
Found at i:66794493 original size:21 final size:21
Alignment explanation
Indices: 66794467--66794509 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
66794457 GGTTCGCTGT
*
66794467 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
66794488 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
66794509 A
1 A
66794510 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:66794509 original size:16 final size:16
Alignment explanation
Indices: 66794490--66794522 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
66794480 TGTATTGGAT
*
66794490 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
66794506 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
66794522 T
1 T
66794523 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:66794567 original size:45 final size:44
Alignment explanation
Indices: 66794501--66794595 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
66794491 GGATTAGAGG
* *
66794501 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
66794546 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
66794590 TGTAAT
1 TGTAAT
66794596 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:66794778 original size:18 final size:17
Alignment explanation
Indices: 66794757--66794791 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
66794747 TTATTATTAA
*
66794757 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
66794775 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
66794792 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:66794835 original size:54 final size:54
Alignment explanation
Indices: 66794777--66794955 Score: 146
Period size: 57 Copynumber: 3.1 Consensus size: 54
66794767 ATTAAAATAT
66794777 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
** * * * * *
66794831 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAAT-ATATTATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTTATATGA-ATT-T-ACTCAAA
*
66794894 TAT
53 T-C
66794897 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
66794951 ATAAT
1 ATAAT
66794956 ATATGATTAT
Statistics
Matches: 93, Mismatches: 16, Indels: 32
0.66 0.11 0.23
Matches are distributed among these distances:
54 10 0.11
55 7 0.08
56 2 0.02
57 13 0.14
58 6 0.06
59 11 0.12
61 11 0.12
62 6 0.06
63 13 0.14
64 2 0.02
65 7 0.08
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
Found at i:66794905 original size:14 final size:15
Alignment explanation
Indices: 66794866--66794907 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
66794856 AAATAACATA
*
66794866 ATTATTATTAAATAT
1 ATTATAATTAAATAT
66794881 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
66794895 A-TATAATTTAATA
1 ATTATAATTAAATA
66794908 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:66794953 original size:120 final size:120
Alignment explanation
Indices: 66794740--66794962 Score: 437
Period size: 120 Copynumber: 1.9 Consensus size: 120
66794730 ATCATATTTA
*
66794740 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
66794805 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAAT
66794860 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
66794925 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66794963 TATAACTAAT
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 102 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAAT
Found at i:66794958 original size:59 final size:59
Alignment explanation
Indices: 66794775--66794958 Score: 173
Period size: 59 Copynumber: 3.1 Consensus size: 59
66794765 TAATTAAAAT
66794775 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
* * ** * * * * *
66794834 ATAT-ATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAAT-ATATTATAATTAAA--A
1 ATATAAT-TTA--ATAAAAT-TCTTAATAA-TTAA-TATTCTTATATGA-ATT-TACTCAAATCA
66794894 T-
58 TA
66794895 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
66794954 ATATA
1 ATATA
66794959 TGATTATAAC
Statistics
Matches: 93, Mismatches: 18, Indels: 28
0.67 0.13 0.20
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 9 0.10
59 22 0.24
61 17 0.18
62 9 0.10
63 12 0.13
64 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
Found at i:66794974 original size:17 final size:16
Alignment explanation
Indices: 66794952--66794998 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
66794942 ACTCAAATCA
66794952 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
66794969 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
66794983 TAAATATATGATTTAA
1 T-AATATATGATTTAA
66794999 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:66794999 original size:17 final size:17
Alignment explanation
Indices: 66794971--66795004 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
66794961 ATTATAACTA
*
66794971 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
66794988 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
66795005 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:66795147 original size:93 final size:92
Alignment explanation
Indices: 66795037--66795231 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
66795027 GATTATAGTT
* * *
66795037 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
66795100 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
66795130 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
66795195 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
66795222 TATGAATTTA
1 TATGAATTTA
66795232 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:66796645 original size:11 final size:11
Alignment explanation
Indices: 66796631--66796657 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
66796621 AAAAATCAAT
66796631 ACAAAAGTTTC
1 ACAAAAGTTTC
66796642 ACAAAAGTTTC
1 ACAAAAGTTTC
66796653 ACAAA
1 ACAAA
66796658 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:66798921 original size:15 final size:15
Alignment explanation
Indices: 66798901--66798931 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
66798891 ATATTATGTA
66798901 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
66798916 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
66798931 T
1 T
66798932 TGAAGGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAGGTAAAAT
Found at i:66804083 original size:23 final size:24
Alignment explanation
Indices: 66804052--66804112 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 24
66804042 TAGCCAAGAC
* *
66804052 CCTGCGAAA-AGGAATGATATTTG
1 CCTGAGAAAGAGGAATGAGATTTG
*
66804075 CCTGAGAAAGAGAGGAATGGGATTTG
1 CCTGAG-AA-AGAGGAATGAGATTTG
66804101 CCTGAGAAAGAG
1 CCTGAGAAAGAG
66804113 AGAAAGAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 5 0.16
24 6 0.19
25 3 0.09
26 18 0.56
ACGTcount: A:0.36, C:0.11, G:0.33, T:0.20
Consensus pattern (24 bp):
CCTGAGAAAGAGGAATGAGATTTG
Found at i:66804099 original size:26 final size:26
Alignment explanation
Indices: 66804061--66804114 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
66804051 CCCTGCGAAA
*
66804061 AGGAATGATATTTGCCTGAGAAAGAG
1 AGGAATGAGATTTGCCTGAGAAAGAG
*
66804087 AGGAATGGGATTTGCCTGAGAAAGAG
1 AGGAATGAGATTTGCCTGAGAAAGAG
66804113 AG
1 AG
66804115 AAAGAAGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.20
Consensus pattern (26 bp):
AGGAATGAGATTTGCCTGAGAAAGAG
Found at i:66808833 original size:30 final size:31
Alignment explanation
Indices: 66808777--66808839 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
66808767 AAATGATCAT
* *
66808777 TGAATTATTTAAAAATTTTCATTTAAGTCAC
1 TGAACTATTTAAAAATTTTCATTTAAGGCAC
66808808 TGAACTATTTAAAAATTTT-ATTTAAGGCAC
1 TGAACTATTTAAAAATTTTCATTTAAGGCAC
66808838 TG
1 TG
66808840 GTAGAGGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 12 0.40
31 18 0.60
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (31 bp):
TGAACTATTTAAAAATTTTCATTTAAGGCAC
Found at i:66809123 original size:48 final size:51
Alignment explanation
Indices: 66809069--66809163 Score: 124
Period size: 48 Copynumber: 1.9 Consensus size: 51
66809059 CAAATACATT
66809069 TAAAACAAATATTAAAACAAGAAACAAA-T-AAAAAATAA-AAAAAGATAC
1 TAAAACAAATATTAAAACAAGAAACAAATTGAAAAAATAATAAAAAGATAC
* * * * *
66809117 TAAAACAATTCTTAAAACAATACACAAATTGAAAATATAATAAAAAG
1 TAAAACAAATATTAAAACAAGAAACAAATTGAAAAAATAATAAAAAG
66809164 TGATTATATT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
48 24 0.62
49 1 0.03
50 8 0.21
51 6 0.15
ACGTcount: A:0.67, C:0.09, G:0.04, T:0.19
Consensus pattern (51 bp):
TAAAACAAATATTAAAACAAGAAACAAATTGAAAAAATAATAAAAAGATAC
Found at i:66812462 original size:34 final size:34
Alignment explanation
Indices: 66812419--66812487 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
66812409 GTATTAAGAG
66812419 TCAGATTGCATTTTACCCCATTTGCTTAAAAAAT
1 TCAGATTGCATTTTACCCCATTTGCTTAAAAAAT
66812453 TCAGATTGCATTTTACCCCATTTGCTTAAAAAAT
1 TCAGATTGCATTTTACCCCATTTGCTTAAAAAAT
66812487 T
1 T
66812488 GGCAAATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (34 bp):
TCAGATTGCATTTTACCCCATTTGCTTAAAAAAT
Found at i:66815197 original size:6 final size:6
Alignment explanation
Indices: 66815186--66815211 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
66815176 TTGAATTTAA
66815186 AATTAT AATTAT AATTAT AATTAT AA
1 AATTAT AATTAT AATTAT AATTAT AA
66815212 CTATGTGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTAT
Found at i:66817507 original size:151 final size:155
Alignment explanation
Indices: 66817198--66817473 Score: 366
Period size: 151 Copynumber: 1.8 Consensus size: 155
66817188 AAAATTTTAA
*
66817198 TTTTTTTTAGAAAAAAGAAAGTTTAGATTTTAAAAACAAAAAAAACTGTTTTTTTAGTCATTTTA
1 TTTTTTTTAGAAAAAAGAAAGTTTAGATTTTAAAAACAAAAAAAACTGTATTTTTAGTCATTTTA
* *
66817263 AAGAAAATTTTAAAATTTTAAAACAAAGGTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTT
66 AAGAAAATGTTAAAATTTTAAAACAAAGGTTTGATTCTTTTTCAACTATTTCAAAATAAAAGCTT
66817328 TGATCTTTAAGAAAAAATAGTGTGT
131 TGATCTTTAAGAAAAAATAGTGTGT
* * * **
66817353 TTTTTTTTA-AAAAAAGAGAGTTTAGATTTT-TAAA-ATAAAAATTTG-ATTTTTAGTCATTTTA
1 TTTTTTTTAGAAAAAAGAAAGTTTAGATTTTAAAAACAAAAAAAACTGTATTTTTAGTCATTTTA
** ** * *
66817414 AAGGAAAA-GTTAGATTTTTTAAAGTAAAGTTTTGA-TCTTTTTCAACTATTTCGAAATAAA
66 AA-GAAAATGTTA-AAATTTTAAAACAAAGGTTTGATTCTTTTTCAACTATTTCAAAATAAA
66817474 GTTCTGATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
151 43 0.41
152 30 0.29
153 3 0.03
154 20 0.19
155 9 0.09
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (155 bp):
TTTTTTTTAGAAAAAAGAAAGTTTAGATTTTAAAAACAAAAAAAACTGTATTTTTAGTCATTTTA
AAGAAAATGTTAAAATTTTAAAACAAAGGTTTGATTCTTTTTCAACTATTTCAAAATAAAAGCTT
TGATCTTTAAGAAAAAATAGTGTGT
Found at i:66818435 original size:27 final size:27
Alignment explanation
Indices: 66818405--66818457 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
66818395 TAGGTGTTAC
66818405 ATTTTAATGAAA-CTATAAGGTTTTTAA
1 ATTTTAATGAAATC-ATAAGGTTTTTAA
*
66818432 ATTTTAATGAAATCCTAAGGTTTTTA
1 ATTTTAATGAAATCATAAGGTTTTTA
66818458 TCGGATTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (27 bp):
ATTTTAATGAAATCATAAGGTTTTTAA
Found at i:66821936 original size:16 final size:16
Alignment explanation
Indices: 66821915--66821945 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
66821905 TCAAATTTAA
66821915 CTGAAATATGAGTCAT
1 CTGAAATATGAGTCAT
66821931 CTGAAATATGAGTCA
1 CTGAAATATGAGTCA
66821946 CACTCAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (16 bp):
CTGAAATATGAGTCAT
Found at i:66825656 original size:42 final size:42
Alignment explanation
Indices: 66825608--66825698 Score: 173
Period size: 42 Copynumber: 2.2 Consensus size: 42
66825598 GTGTCTTGAT
66825608 CGTGTGTGACACACGGCCTAGCATATGGGCATGTGTTTTGGC
1 CGTGTGTGACACACGGCCTAGCATATGGGCATGTGTTTTGGC
*
66825650 CGTGTGTGACACACGGCCTGGCATATGGGCATGTGTTTTGGC
1 CGTGTGTGACACACGGCCTAGCATATGGGCATGTGTTTTGGC
66825692 CGTGTGT
1 CGTGTGT
66825699 CCTATGCACC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.14, C:0.21, G:0.35, T:0.30
Consensus pattern (42 bp):
CGTGTGTGACACACGGCCTAGCATATGGGCATGTGTTTTGGC
Found at i:66828310 original size:27 final size:27
Alignment explanation
Indices: 66828279--66828456 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
66828269 TAAATTGTAC
66828279 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66828306 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66828332 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66828360 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66828388 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * * *
66828415 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66828442 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66828457 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66828340 original size:54 final size:55
Alignment explanation
Indices: 66828279--66828456 Score: 209
Period size: 54 Copynumber: 3.3 Consensus size: 55
66828269 TAAATTGTAC
* *
66828279 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAATTGAATATGAT
* * * * *
66828334 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGA-ATTGAATATGAT
* * * * *
66828388 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAATGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAATTGAATATGAT
*
66828442 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66828457 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
54 61 0.59
55 43 0.41
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAATTGAATATGAT
Found at i:66828420 original size:82 final size:81
Alignment explanation
Indices: 66828280--66828435 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
66828270 AAATTGTACA
* * *
66828280 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
66828345 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
66828361 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAAT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAAT
*
66828425 GTGCGAGTTGA
64 GTGCGAATTGA
66828436 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:66828447 original size:82 final size:81
Alignment explanation
Indices: 66828276--66828456 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
66828266 GATTAAATTG
* *
66828276 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
66828341 GTGTGCGAATTGACCA
66 ATGTGCGAATTGACCA
* * ** *
66828357 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66828421 AAATGTGCGAGTTGATTA
64 AAATGTGCGAATTGACCA
* *
66828439 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66828457 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
ATGTGCGAATTGACCA
Found at i:66834821 original size:27 final size:27
Alignment explanation
Indices: 66834790--66834967 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66834780 TAAATTGTAC
66834790 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66834817 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66834843 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66834871 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66834899 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66834926 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66834953 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66834968 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66834904 original size:82 final size:81
Alignment explanation
Indices: 66834791--66834946 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66834781 AAATTGTACA
* *
66834791 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66834855 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66834872 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66834937 TGCGAGTTGA
65 TGCGAATTGA
66834947 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66834958 original size:82 final size:81
Alignment explanation
Indices: 66834787--66834967 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
66834777 GATTAAATTG
* *
66834787 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
66834852 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
66834868 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66834932 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
66834950 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66834968 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:66837594 original size:32 final size:33
Alignment explanation
Indices: 66837515--66837599 Score: 100
Period size: 32 Copynumber: 2.6 Consensus size: 33
66837505 TTCAAGTAAT
* *
66837515 ATTATGTTTATTTAAAAGATTTTACTTTAAATA
1 ATTATGTTTATTTAAAAGATATTACGTTAAATA
* * * * *
66837548 GTTATATTTATTTAAGATATATTA-GTTGAATA
1 ATTATGTTTATTTAAAAGATATTACGTTAAATA
66837580 ATTATGTTTATTTAAAAGAT
1 ATTATGTTTATTTAAAAGAT
66837600 GTAATTATTC
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
32 22 0.54
33 19 0.46
ACGTcount: A:0.39, C:0.01, G:0.09, T:0.51
Consensus pattern (33 bp):
ATTATGTTTATTTAAAAGATATTACGTTAAATA
Found at i:66840140 original size:29 final size:28
Alignment explanation
Indices: 66840105--66840176 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
66840095 TCATGAGATT
*
66840105 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
66840135 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
66840162 TGGCACTAAGTGTGC
1 -GGCACTAAGTGTGC
66840177 ACGGTTGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:66840457 original size:173 final size:174
Alignment explanation
Indices: 66840135--66840461 Score: 530
Period size: 173 Copynumber: 1.9 Consensus size: 174
66840125 AAATTGTACA
* *
66840135 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
* * *
66840200 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
*
66840265 TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAACGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *** *
66840309 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGTGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
66840374 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
*
66840438 TTTTGGACAACGGAAAAGGTAAGT
131 TTTTGGACAACGAAAAAGGTAAGT
66840462 ACCTTGAGTT
Statistics
Matches: 140, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
173 78 0.56
174 62 0.44
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAACGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:66847185 original size:24 final size:24
Alignment explanation
Indices: 66847128--66847185 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 24
66847118 TCCGGGCTAT
*
66847128 ATAA-CGGGAAGCTCATAAGAGCC
1 ATAATCGGGAAGCTCATAAGAACC
** *
66847151 ATAATATGGAAGTTCATAAAGAACC
1 ATAATCGGGAAGCTCAT-AAGAACC
66847176 AT-ATCGGGAA
1 ATAATCGGGAA
66847186 CCTCCAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
23 4 0.15
24 15 0.56
25 8 0.30
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (24 bp):
ATAATCGGGAAGCTCATAAGAACC
Found at i:66848855 original size:6 final size:6
Alignment explanation
Indices: 66848844--66849692 Score: 1698
Period size: 6 Copynumber: 141.5 Consensus size: 6
66848834 ATTTTCTCTC
66848844 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66848892 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66848940 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66848988 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849036 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849084 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849132 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849180 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849228 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849276 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849324 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849372 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849420 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849468 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849516 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849564 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849612 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT CATCTT
66849660 CATCTT CATCTT CATCTT CATCTT CATCTT CAT
1 CATCTT CATCTT CATCTT CATCTT CATCTT CAT
66849693 GTCGTGAGAA
Statistics
Matches: 843, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 843 1.00
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (6 bp):
CATCTT
Found at i:66860463 original size:8 final size:8
Alignment explanation
Indices: 66860450--66860476 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
66860440 GTCAAAATAT
66860450 TTATTTTA
1 TTATTTTA
66860458 TTATTTTA
1 TTATTTTA
66860466 TTATTTTA
1 TTATTTTA
66860474 TTA
1 TTA
66860477 AAGTTTAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TTATTTTA
Found at i:66861440 original size:25 final size:25
Alignment explanation
Indices: 66861412--66861462 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
66861402 TGAGCGATAC
66861412 GAGGTAAGTTCGTATAATTAGAATT
1 GAGGTAAGTTCGTATAATTAGAATT
66861437 GAGGTAAGTTCGTATAATTAGAATT
1 GAGGTAAGTTCGTATAATTAGAATT
66861462 G
1 G
66861463 GACATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.35
Consensus pattern (25 bp):
GAGGTAAGTTCGTATAATTAGAATT
Found at i:66874789 original size:42 final size:42
Alignment explanation
Indices: 66874723--66874821 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
66874713 ACGGGCAGAG
* * * *
66874723 ACACGGGCGTGTGTCTTAGTTGTGTGTGTCACAC-AGCCTAGA
1 ACACGAGCATGTGTCTCAGCTGTGTGTGTCACACGA-CCTAGA
66874765 ACACGAGCATGTGTCTCAGCTGTGTGTGTCACACGACCTAGA
1 ACACGAGCATGTGTCTCAGCTGTGTGTGTCACACGACCTAGA
*
66874807 ACACGAGCATATGTC
1 ACACGAGCATGTGTC
66874822 CTGGCCGTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 50 0.98
43 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (42 bp):
ACACGAGCATGTGTCTCAGCTGTGTGTGTCACACGACCTAGA
Found at i:66877228 original size:25 final size:25
Alignment explanation
Indices: 66877199--66877260 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
66877189 TCTTCTGTTT
*
66877199 TTTATCTGTTTTTTATTTATTTTTC
1 TTTATTTGTTTTTTATTTATTTTTC
* * *
66877224 TTTATTTCTTTATTATTTGTTTTTC
1 TTTATTTGTTTTTTATTTATTTTTC
66877249 TTTATTTGTTTT
1 TTTATTTGTTTT
66877261 ATAATATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.11, C:0.06, G:0.05, T:0.77
Consensus pattern (25 bp):
TTTATTTGTTTTTTATTTATTTTTC
Found at i:66877229 original size:14 final size:14
Alignment explanation
Indices: 66877210--66877260 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
66877200 TTATCTGTTT
*
66877210 TTTATTTATTTTTC
1 TTTATTTGTTTTTC
*
66877224 TTTA-TT-TCTTT-
1 TTTATTTGTTTTTC
*
66877235 ATTATTTGTTTTTC
1 TTTATTTGTTTTTC
66877249 TTTATTTGTTTT
1 TTTATTTGTTTT
66877261 ATAATATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 3 0.10
12 6 0.20
13 6 0.20
14 15 0.50
ACGTcount: A:0.12, C:0.06, G:0.04, T:0.78
Consensus pattern (14 bp):
TTTATTTGTTTTTC
Found at i:66877399 original size:398 final size:397
Alignment explanation
Indices: 66876818--66877884 Score: 1456
Period size: 398 Copynumber: 2.7 Consensus size: 397
66876808 GACATTTTTC
* * * *
66876818 TGTTTTTTATTTGTTTTTCTTT-TTT-ATTATTATTTGTTTTATAATATTTTATGTAT-ATTTTT
1 TGTTTATTATTTATTTTTATTTATTTCTTTATTATTTGTTTTATAATATTTTATGTATAATTTTT
* *
66876880 CTAGTGGAGCCATTCTAAATGGTGCCACCAATACGTTCTTTTTTAATTTATTTTTTTATATTTAA
66 -TGGTGGAGCCATTCTAAATGGCGCCACCAATACGTTCTTTTTTAA--TATTTTTTTATATTTAA
*
66876945 AAATTTTAAAAAATAATATTTTATTTGGTGAAGCCATTCTATTTGGCGTGACCAAATTTATATAT
128 AAA-TTTAAAAAATAATATTTTATTTGGTG-AGCCATTCTATTTGGCATGACCAAATTTATATAT
*
66877010 ATAAGACTCTCAATGACACATGAATCTGAGTTGAAAGAAAAAAAATTACTTATACTTTGTTAGAG
191 ATAAGCCTCTCAATGACACATGAATCTGAGTTGAAAGAAAAAAAATTACTTATACTTTGTTAGAG
*
66877075 GATGAATGGGATGAAAAAATGGGGAGG-GGGGACTTTAAACAAATTTTCCTTTTTCTGGTGGAGC
256 GATGAATGGGATGAAAAAATGGGG-GGAGGGG-CTTTAAACAAATTTT-CTTTTTCTGGTAGAGC
*
66877139 CAAATAATTTGGCGCCACCAGATTCCAACGCCTCTGCTACCTTTTGTCCTTCTTCTG-TTTTTTA
318 CAAATAATTTGGCACCACCAGATTCCAACGCCTCTGCTACCTTTTGTCCTT-TTCTGCTTTTTTA
*
66877203 TCTGTTTTTTATTTATT
382 TCTG-ATTTTATTTATT
* *
66877220 T-TTCT-TTATTTCTTTATTATTTGTTT-TTCT-TTATTTGTTTTATAATATTTTATGTATAATT
1 TGTT-TATTATTTATTT-TTATTTATTTCTT-TATTATTTGTTTTATAATATTTTATGTATAATT
* * * *
66877281 TTTTGGTGGAACCATTCTAAATGGCGCTACTAATACATT-TTTTTT-A-ATTTTTTTATATTTAA
63 TTTTGGTGGAGCCATTCTAAATGGCGCCACCAATACGTTCTTTTTTAATATTTTTTTATATTTAA
* ***
66877343 AAATTTAAAAATATAATATTTTATTTGGTAGAGCCATTATATTTGATTTGACCAAATTTATATAT
128 AAATTTAAAAA-ATAATATTTTATTTGGT-GAGCCATTCTATTTGGCATGACCAAATTTATATAT
* * *
66877408 ATAAGCCTATCAATGACACATGAATCTGAGTTAAAAGAAAAAAAATTACTTATACTTTGATAGAG
191 ATAAGCCTCTCAATGACACATGAATCTGAGTTGAAAGAAAAAAAATTACTTATACTTTGTTAGAG
* * *
66877473 GATGAGTGGGATGAAAAAATGGGGGGAGGGGGTTTAAACAAATTTTCTTTTTTTGGTAGAGCCAA
256 GATGAATGGGATGAAAAAATGGGGGGAGGGGCTTTAAACAAATTTTCTTTTTCTGGTAGAGCCAA
* *
66877538 ATAATTTGGCACCACCAGATTCCAACGCCTCTGCTACCTTTTGTCCTTTTTTGCTTTTTTATTTG
321 ATAATTTGGCACCACCAGATTCCAACGCCTCTGCTACCTTTTGTCCTTTTCTGCTTTTTTATCTG
*
66877603 ATTTTCTTTATT
386 ATTTTATTTATT
* *
66877615 TGTTTATTATTTATTTTTCTTTATTTCTTTATTATTTGTTTTATAATATTTTATGTATATTTTTT
1 TGTTTATTATTTATTTTTATTTATTTCTTTATTATTTGTTTTATAATATTTTATGTATAATTTTT
* *
66877680 TGGTGGAGTCATTCTAAATGGCGCCACCACCAATACGTTCTTTTTTAATTTATTTTTTTATAATT
66 TGGTGGAGCCATTCTAAATGGCG---CCACCAATACGTTCTTTTTTAA--TATTTTTTTATATTT
* * * * *
66877745 AAAATTTTTAAAAATAATATTTTATTTGGTGGAACCATTCTATTTGGCATGATCAAATTTGTATA
126 AAAAATTTAAAAAATAATATTTTATTTGGT-GAGCCATTCTATTTGGCATGACCAAATTTATATA
** * * *
66877810 TGCAAGCCTCTCATTGACACATGAATCTGAGTTGAAAGAAAAAAAAATGACTTATACTTTGTCAG
190 TATAAGCCTCTCAATGACACATGAATCTGAGTTGAAAG-AAAAAAAATTACTTATACTTTGTTAG
66877875 AGGATGAATG
254 AGGATGAATG
66877885 AGAGAGATAT
Statistics
Matches: 588, Mismatches: 55, Indels: 42
0.86 0.08 0.06
Matches are distributed among these distances:
395 25 0.04
396 141 0.24
397 24 0.04
398 154 0.26
399 11 0.02
400 6 0.01
401 13 0.02
402 13 0.02
403 138 0.23
404 63 0.11
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (397 bp):
TGTTTATTATTTATTTTTATTTATTTCTTTATTATTTGTTTTATAATATTTTATGTATAATTTTT
TGGTGGAGCCATTCTAAATGGCGCCACCAATACGTTCTTTTTTAATATTTTTTTATATTTAAAAA
TTTAAAAAATAATATTTTATTTGGTGAGCCATTCTATTTGGCATGACCAAATTTATATATATAAG
CCTCTCAATGACACATGAATCTGAGTTGAAAGAAAAAAAATTACTTATACTTTGTTAGAGGATGA
ATGGGATGAAAAAATGGGGGGAGGGGCTTTAAACAAATTTTCTTTTTCTGGTAGAGCCAAATAAT
TTGGCACCACCAGATTCCAACGCCTCTGCTACCTTTTGTCCTTTTCTGCTTTTTTATCTGATTTT
ATTTATT
Found at i:66877611 original size:25 final size:26
Alignment explanation
Indices: 66877583--66877656 Score: 95
Period size: 25 Copynumber: 3.0 Consensus size: 26
66877573 ACCTTTTGTC
*
66877583 CTTT-TTTGCTTTTTTATTTGATTTT
1 CTTTATTTGCTTTATTATTTGATTTT
66877608 CTTTATTTG-TTTATTATTT-ATTTTT
1 CTTTATTTGCTTTATTATTTGA-TTTT
66877633 CTTTATTT-CTTTATTATTTG-TTTT
1 CTTTATTTGCTTTATTATTTGATTTT
66877657 ATAATATTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
24 5 0.11
25 35 0.80
26 4 0.09
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.76
Consensus pattern (26 bp):
CTTTATTTGCTTTATTATTTGATTTT
Found at i:66881563 original size:15 final size:15
Alignment explanation
Indices: 66881543--66881573 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
66881533 GTTGCAAGAG
66881543 AACATTAAAAATCAC
1 AACATTAAAAATCAC
66881558 AACATTAAAAATCAC
1 AACATTAAAAATCAC
66881573 A
1 A
66881574 TTCTTCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.19, G:0.00, T:0.19
Consensus pattern (15 bp):
AACATTAAAAATCAC
Found at i:66882744 original size:20 final size:20
Alignment explanation
Indices: 66882656--66882746 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 20
66882646 ATCTTAAAAG
*
66882656 ATAAAATAAAATAAATAACT
1 ATAAAATAAAATTAATAACT
66882676 ATAAAATAAAATT-A-AACT
1 ATAAAATAAAATTAATAACT
* * *
66882694 ATAAACT----TTAAAACACA
1 ATAAAATAAAATTAATA-ACT
*
66882711 ATAAAAACAAAATTAATAACT
1 AT-AAAATAAAATTAATAACT
66882732 ATAAAATAAAATTAA
1 ATAAAATAAAATTAA
66882747 AAACAATTGT
Statistics
Matches: 55, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
14 2 0.04
15 1 0.02
16 1 0.02
17 4 0.07
18 13 0.24
19 1 0.02
20 24 0.44
21 4 0.07
22 5 0.09
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.25
Consensus pattern (20 bp):
ATAAAATAAAATTAATAACT
Found at i:66886893 original size:69 final size:69
Alignment explanation
Indices: 66886706--66887003 Score: 332
Period size: 69 Copynumber: 4.2 Consensus size: 69
66886696 GTTATTTTTT
* *
66886706 AAAAATT-TAAATATAATTAAAAAAATGTTTGAATAAACAAATATTATAAAATATTTAAAA-ATT
1 AAAAATTATAAATA-AATTAAAAAAACGTTTGAATAAACAAATATTATAAAACATTTAAAATATT
66886769 ATAAA
65 ATAAA
* *
66886774 AAAAATAATAAACAAATT-AAAAAACGTTTGAATAAACAAATATTATAAAACATTTAAAATATTA
1 AAAAATTATAAATAAATTAAAAAAACGTTTGAATAAACAAATATTATAAAACATTTAAAATATTA
66886838 TAAA
66 TAAA
* * * *
66886842 ATAAATTATAAATAAATTAAAAAAACGTTTTAATAGACAAATATTACAAAACATTTAAAATATTA
1 AAAAATTATAAATAAATTAAAAAAACGTTTGAATAAACAAATATTATAAAACATTTAAAATATTA
66886907 TAAAGCAAATAA
66 T-------A-AA
** * *
66886919 TAAACAATTTTATAAATAAATTTTAAAAATGTTTGAATAAATAAATATTATAAAACATTTAAAAT
1 -AAA-AA--TTATAAATAAATTAAAAAAACGTTTGAATAAACAAATATTATAAAACATTTAAAAT
66886984 ATTATAAA
62 ATTATAAA
* *
66886992 ACAAATAATAAA
1 AAAAATTATAAA
66887004 CAATTTTAAA
Statistics
Matches: 195, Mismatches: 20, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
67 39 0.20
68 33 0.17
69 55 0.28
71 2 0.01
72 2 0.01
73 2 0.01
74 1 0.01
76 1 0.01
77 2 0.01
78 2 0.01
79 2 0.01
81 54 0.28
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (69 bp):
AAAAATTATAAATAAATTAAAAAAACGTTTGAATAAACAAATATTATAAAACATTTAAAATATTA
TAAA
Found at i:66886984 original size:27 final size:25
Alignment explanation
Indices: 66886930--66886984 Score: 58
Period size: 27 Copynumber: 2.1 Consensus size: 25
66886920 AAACAATTTT
**
66886930 ATAAATAAATTTTAAAAATGTTTGA
1 ATAAATAAATTTTAAAAATGTTAAA
66886955 ATAAATAAATATTATAAAACAT-TTAAA
1 ATAAATAAAT-TT-TAAAA-ATGTTAAA
66886982 ATA
1 ATA
66886985 TTATAAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 10 0.40
26 2 0.08
27 11 0.44
28 2 0.08
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
ATAAATAAATTTTAAAAATGTTAAA
Found at i:66887030 original size:16 final size:17
Alignment explanation
Indices: 66886993--66887032 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
66886983 TATTATAAAA
*
66886993 CAAATAATAAACAATTT
1 CAAAAAATAAACAATTT
*
66887010 TAAAAAATAAA-AATTT
1 CAAAAAATAAACAATTT
66887026 CAAAAAA
1 CAAAAAA
66887033 AAAGTTTGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (17 bp):
CAAAAAATAAACAATTT
Found at i:66887072 original size:86 final size:84
Alignment explanation
Indices: 66886849--66887104 Score: 342
Period size: 81 Copynumber: 3.0 Consensus size: 84
66886839 AAAATAAATT
* * * * * *
66886849 ATAAATAAATTAAAAAAACGTTTTAATAGACAAATATTACAAAACATTTAAAATATTATAAAGCA
1 ATAAA-AATTTAAAAAAAAGTTTGAATA-AAAAATATTATAAAACATTTAAAATATTATAAAACA
*
66886914 AATAATAAACAATTTT-ATAA
64 AATAATAAACAATTTTAAAAA
* *
66886934 AT--AAATTT-TAAAAATGTTTGAATAAATAAATATTATAAAACATTTAAAATATTATAAAACAA
1 ATAAAAATTTAAAAAAAAGTTTGAATAAA-AAATATTATAAAACATTTAAAATATTATAAAACAA
66886996 ATAATAAACAATTTTAAAAA
65 ATAATAAACAATTTTAAAAA
*
66887016 ATAAAAATTTCAAAAAAAAAGTTTGAATAAAAAATATTATAAAACATTTAAAATATTATAAAATA
1 ATAAAAATTT--AAAAAAAAGTTTGAATAAAAAATATTATAAAACATTTAAAATATTATAAAACA
66887081 AATAATAAACAA-TTTAAAAA
64 AATAATAAACAATTTTAAAAA
66887101 ATAA
1 ATAA
66887105 TAATAAACAA
Statistics
Matches: 153, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
80 1 0.01
81 61 0.40
82 9 0.06
83 1 0.01
84 6 0.04
85 14 0.09
86 45 0.29
87 16 0.10
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (84 bp):
ATAAAAATTTAAAAAAAAGTTTGAATAAAAAATATTATAAAACATTTAAAATATTATAAAACAAA
TAATAAACAATTTTAAAAA
Found at i:66887077 original size:10 final size:10
Alignment explanation
Indices: 66887046--66887080 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
66887036 GTTTGAATAA
66887046 AAAATATTAT
1 AAAATATTAT
*
66887056 AAAACATT-T
1 AAAATATTAT
66887065 AAAATATTAT
1 AAAATATTAT
66887075 AAAATA
1 AAAATA
66887081 AATAATAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAATATTAT
Found at i:66887124 original size:23 final size:23
Alignment explanation
Indices: 66887075--66887124 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
66887065 AAAATATTAT
* *
66887075 AAAATAAATAATAAACAATTTAA
1 AAAATAAATAATAAACAAATAAA
66887098 AAAAT-AATAATAAACAAATAAA
1 AAAATAAATAATAAACAAATAAA
66887120 GAAAA
1 -AAAA
66887125 ACAAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (23 bp):
AAAATAAATAATAAACAAATAAA
Found at i:66890568 original size:20 final size:19
Alignment explanation
Indices: 66890526--66890569 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
66890516 TCTTTTTGTT
*
66890526 TATTTTTTGTTTTAATATT
1 TATTTTTTGTTTTAATATG
66890545 TATTTTTATGTTTTTAA-ATG
1 TATTTTT-TG-TTTTAATATG
66890565 TATTT
1 TATTT
66890570 GATTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 9 0.41
21 6 0.27
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (19 bp):
TATTTTTTGTTTTAATATG
Found at i:66890574 original size:25 final size:25
Alignment explanation
Indices: 66890541--66890599 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
66890531 TTTGTTTTAA
* *
66890541 TATTTATTT-TTATGTTTTTAAATG
1 TATTTATTTATTATATTTTAAAATG
66890565 TATTTGATTTATTATATTTTAAAAT-
1 TATTT-ATTTATTATATTTTAAAATG
*
66890590 TTTTTATTTA
1 TATTTATTTA
66890600 ATAAAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 10 0.33
25 8 0.27
26 12 0.40
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (25 bp):
TATTTATTTATTATATTTTAAAATG
Found at i:66890916 original size:3 final size:3
Alignment explanation
Indices: 66890908--66890938 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
66890898 ACTTGATACT
66890908 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
66890939 ATTCAAGACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:66907137 original size:6 final size:6
Alignment explanation
Indices: 66907128--66907153 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
66907118 CTCCCTCTCC
66907128 TTTTTA TTTTTA TTTTTA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT
66907154 ATTTTGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:66914725 original size:27 final size:26
Alignment explanation
Indices: 66914683--66914756 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
66914673 TATTTTTTTG
**
66914683 AAATTTTACCTAGGGTAAAATTGTTAA
1 AAATTTTACCGGGGGTAAAATTG-TAA
*
66914710 AAATTTTACCGGGGGTAAAATTGTCA
1 AAATTTTACCGGGGGTAAAATTGTAA
* *
66914736 AAATTTTACTGGGAGTAAAAT
1 AAATTTTACCGGGGGTAAAAT
66914757 AGGGGTGAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.50
27 21 0.50
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (26 bp):
AAATTTTACCGGGGGTAAAATTGTAA
Found at i:66914753 original size:26 final size:26
Alignment explanation
Indices: 66914683--66914756 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
66914673 TATTTTTTTG
*
66914683 AAATTTTACCTAGGGTAAAATTGTTAA
1 AAATTTTA-CTGGGGTAAAATTGTTAA
* *
66914710 AAATTTTACCGGGGGTAAAATTG-TCA
1 AAATTTTA-CTGGGGTAAAATTGTTAA
66914736 AAATTTTACTGGGAGTAAAAT
1 AAATTTTACTGGG-GTAAAAT
66914757 AGGGGTGAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 4 0.10
26 17 0.40
27 21 0.50
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (26 bp):
AAATTTTACTGGGGTAAAATTGTTAA
Found at i:66916713 original size:27 final size:28
Alignment explanation
Indices: 66916673--66916790 Score: 91
Period size: 27 Copynumber: 4.3 Consensus size: 28
66916663 AACATGTCAA
*
66916673 GAAA-GAAAAGCCTTTGTGGCGAATCAT
1 GAAATGAAAACCCTTTGTGGCGAATCAT
*
66916700 GAAATGAAAA-CCTTTGTGGCGAATCTT
1 GAAATGAAAACCCTTTGTGGCGAATCAT
* * * * * *
66916727 GAAAAGAATA-GCTTGCGTGGTGAATTAT
1 GAAATGAAAACCCTT-TGTGGCGAATCAT
* * *
66916755 GAAAGGAAATACCCTTTGTGGCGGATTAT
1 GAAATGAAA-ACCCTTTGTGGCGAATCAT
66916784 G-AATGAA
1 GAAATGAA
66916791 CAGCCTCTAT
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
27 31 0.43
28 26 0.36
29 12 0.17
30 3 0.04
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (28 bp):
GAAATGAAAACCCTTTGTGGCGAATCAT
Found at i:66925050 original size:20 final size:21
Alignment explanation
Indices: 66925025--66925072 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
66925015 GAAAAACTTT
66925025 TATTTGAACACT-TTTGAAAA
1 TATTTGAACACTATTTGAAAA
* * *
66925045 TATTTGGACATTATTTGATAA
1 TATTTGAACACTATTTGAAAA
66925066 T-TTTGAA
1 TATTTGAA
66925073 ATGTTTAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.46
Consensus pattern (21 bp):
TATTTGAACACTATTTGAAAA
Found at i:66925467 original size:21 final size:21
Alignment explanation
Indices: 66925429--66925468 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
66925419 ATTTTTTAAA
*
66925429 ATAATACAAATGTGTTAATAT
1 ATAATACAAATATGTTAATAT
66925450 ATAATTACAAATAT-TTAAT
1 ATAA-TACAAATATGTTAAT
66925469 GGTTATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (21 bp):
ATAATACAAATATGTTAATAT
Found at i:66925666 original size:23 final size:23
Alignment explanation
Indices: 66925596--66925667 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
66925586 CAAGTAATAA
* *
66925596 TAAATTATTTTTTATATTCATATT
1 TAAA-TATTATTTAAATTCATATT
*
66925620 CAAATATCATAATTT-AATT-A-ATT
1 TAAATAT--T-ATTTAAATTCATATT
66925643 TAAATATTATTTAAATTCATATT
1 TAAATATTATTTAAATTCATATT
66925666 TA
1 TA
66925668 TTATTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
20 4 0.11
21 5 0.13
22 1 0.03
23 17 0.45
24 4 0.11
25 4 0.11
26 3 0.08
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (23 bp):
TAAATATTATTTAAATTCATATT
Found at i:66931612 original size:22 final size:22
Alignment explanation
Indices: 66931587--66931629 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
66931577 TCAAGACCTG
66931587 TAGGAATATTTTGTAAATATTT
1 TAGGAATATTTTGTAAATATTT
*
66931609 TAGGAATATTTTGTAGATATT
1 TAGGAATATTTTGTAAATATT
66931630 CTTTTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTTTGTAAATATTT
Found at i:66935349 original size:22 final size:22
Alignment explanation
Indices: 66935321--66935363 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
66935311 AGGGGGAGTG
66935321 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
66935343 TAGGAATATTTTGTAGATATT
1 TAGGAATATTCTGTAAATATT
66935364 CTTTTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:66937305 original size:40 final size:41
Alignment explanation
Indices: 66937261--66937344 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
66937251 TGTGCATGAT
*
66937261 GTTCTTTGCATTTAT-TATCTGCTTCATGCTTGACTAAATA
1 GTTCTTTACATTTATATATCTGCTTCATGCTTGACTAAATA
66937301 GTTCTTTACATTTATATATCTGCTTCATGCTTGACTAAATA
1 GTTCTTTACATTTATATATCTGCTTCATGCTTGACTAAATA
66937342 GTT
1 GTT
66937345 TATGCTGTCC
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 14 0.33
41 28 0.67
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.48
Consensus pattern (41 bp):
GTTCTTTACATTTATATATCTGCTTCATGCTTGACTAAATA
Found at i:66938593 original size:16 final size:16
Alignment explanation
Indices: 66938550--66938585 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66938540 AATAAGACTC
* *
66938550 TAATTGAATAAAATTG
1 TAATTGAATAGAGTTG
66938566 TAATTGAATAGAGTTG
1 TAATTGAATAGAGTTG
66938582 TAAT
1 TAAT
66938586 GTAATAGAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.39
Consensus pattern (16 bp):
TAATTGAATAGAGTTG
Found at i:66938676 original size:44 final size:46
Alignment explanation
Indices: 66938583--66938676 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 46
66938573 ATAGAGTTGT
* *
66938583 AATGTAATAGAACTGTAATCAGTAATTCAATTGTTTGATTGAATGG
1 AATGGAATAGAACTGTAATCAGTAATTCAATTGTTTGATTGAATAG
* *
66938629 AATGGAATAGAACTGTAAT-AGT-ATTC-TTGTGTTTGGTTGAATAG
1 AATGGAATAGAACTGTAATCAGTAATTCAAT-TGTTTGATTGAATAG
66938673 AATG
1 AATG
66938677 ATGTTGTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.49
45 3 0.07
46 18 0.42
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATCAGTAATTCAATTGTTTGATTGAATAG
Found at i:66938886 original size:12 final size:12
Alignment explanation
Indices: 66938871--66938897 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
66938861 AATATATAAT
66938871 TTAATAAAATTA
1 TTAATAAAATTA
66938883 TTAATAAAATTA
1 TTAATAAAATTA
66938895 TTA
1 TTA
66938898 TTATATGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TTAATAAAATTA
Found at i:66938889 original size:20 final size:20
Alignment explanation
Indices: 66938788--66938880 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 20
66938778 ATTATTAAAA
*
66938788 ATAATTTAATAAAAATAATAA
1 ATAATTTAAT-AAAATAATAT
* * **
66938809 ATAATTTAATTATATTTTAT
1 ATAATTTAATAAAATAATAT
* *
66938829 CATAA-TT-AT-TATTAA-AT
1 -ATAATTTAATAAAATAATAT
66938846 ATAATTTAATAAAATAATAT
1 ATAATTTAATAAAATAATAT
66938866 ATAATTTAATAAAAT
1 ATAATTTAATAAAAT
66938881 TATTAATAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
16 4 0.07
17 4 0.07
18 3 0.05
19 6 0.11
20 24 0.44
21 14 0.25
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (20 bp):
ATAATTTAATAAAATAATAT
Found at i:66938894 original size:58 final size:58
Alignment explanation
Indices: 66938762--66938900 Score: 192
Period size: 58 Copynumber: 2.4 Consensus size: 58
66938752 TATTGTTATT
* *
66938762 AAATTTTAATAAGATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATT
1 AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATA
* * * *
66938820 ATATTTT-ATCATAATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATA
1 AAATTTTAAT-AAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATA
66938877 AAATTATTAATAAAATTATTATTA
1 AAATT-TTAATAAAATTATTATTA
66938901 TATGAATTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
57 25 0.36
58 43 0.61
59 2 0.03
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.45
Consensus pattern (58 bp):
AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATA
Found at i:66940290 original size:16 final size:16
Alignment explanation
Indices: 66940265--66940297 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
66940255 AATATTTTAT
*
66940265 ATCAAGTGTATGCCTC
1 ATCAAATGTATGCCTC
66940281 ATCAAATGTATGCCTC
1 ATCAAATGTATGCCTC
66940297 A
1 A
66940298 CTAGCTTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (16 bp):
ATCAAATGTATGCCTC
Found at i:66942699 original size:23 final size:24
Alignment explanation
Indices: 66942672--66942717 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
66942662 GTAAGAAATG
66942672 GTTGCCGATT-GAGTGTTTTTGTT
1 GTTGCCGATTAGAGTGTTTTTGTT
66942695 GTTGCCGATTGAGAGTGTTTTTG
1 GTTGCCGATT-AGAGTGTTTTTG
66942718 AGGTGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 10 0.48
25 11 0.52
ACGTcount: A:0.11, C:0.09, G:0.33, T:0.48
Consensus pattern (24 bp):
GTTGCCGATTAGAGTGTTTTTGTT
Found at i:66943662 original size:3 final size:3
Alignment explanation
Indices: 66943654--66943703 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
66943644 TATTCTTACG
66943654 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
66943702 TT
1 TT
66943704 TATGACCTCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:66945513 original size:53 final size:54
Alignment explanation
Indices: 66945383--66945632 Score: 239
Period size: 55 Copynumber: 4.7 Consensus size: 54
66945373 ATGCGGGTAC
* * * *
66945383 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
66945432 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
66945485 CTCACCAATGCCATGCCTTGGCACGGTCTTACGTGAG-A-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTATCC-TTGCCTTAT-GAAA
* ** * *
66945540 CTTATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
66945593 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTA
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA
66945633 CCATTAAACC
Statistics
Matches: 163, Mismatches: 25, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
49 38 0.23
50 1 0.01
52 2 0.01
53 46 0.28
54 11 0.07
55 63 0.39
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:66945574 original size:108 final size:110
Alignment explanation
Indices: 66945430--66945626 Score: 301
Period size: 108 Copynumber: 1.8 Consensus size: 110
66945420 ATCCTTTTGA
* * *
66945430 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
66945493 -TGCCATGCCTTGGCACGGTCTTACGTGAGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCACGGTCTTACGTGAGACCTTTGCCTTATAGT
* * *
66945538 AACTTATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
66945603 TGCCATGCCTTGGCATGGTCTTAC
66 TGCCATGCCTTGGCACGGTCTTAC
66945627 ATGGTACCAT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.61
109 7 0.09
110 23 0.29
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCACGGTCTTACGTGAGACCTTTGCCTTATAGT
Found at i:66950455 original size:17 final size:18
Alignment explanation
Indices: 66950429--66950467 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
66950419 GAATGTGTGG
66950429 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
66950445 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
66950463 AAAAT
1 AAAAT
66950468 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:66950644 original size:15 final size:15
Alignment explanation
Indices: 66950624--66950654 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
66950614 AAGACAATAT
66950624 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
66950639 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
66950654 A
1 A
66950655 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:66952960 original size:15 final size:15
Alignment explanation
Indices: 66952950--66952979 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66952940 TCCCTTCTTG
66952950 ACCACGACCTTTTCC
1 ACCACGACCTTTTCC
*
66952965 ACCACGACCATTTCC
1 ACCACGACCTTTTCC
66952980 TCGATCTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.07, T:0.23
Consensus pattern (15 bp):
ACCACGACCTTTTCC
Found at i:66953747 original size:17 final size:18
Alignment explanation
Indices: 66953721--66953759 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
66953711 CAAATTGTGG
66953721 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
66953737 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
66953755 AAAAT
1 AAAAT
66953760 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:66953936 original size:15 final size:15
Alignment explanation
Indices: 66953916--66953946 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
66953906 AAAACAATAT
66953916 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
66953931 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
66953946 A
1 A
66953947 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:66962373 original size:23 final size:24
Alignment explanation
Indices: 66962347--66962391 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
66962337 TGTCTTCTAA
66962347 GGTTTA-TTTAAGATTTTTTTTAG
1 GGTTTAGTTTAAGATTTTTTTTAG
*
66962370 GGTTTAGTTTAAGCTTTTTTTT
1 GGTTTAGTTTAAGATTTTTTTT
66962392 GGTTTTGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.18, C:0.02, G:0.18, T:0.62
Consensus pattern (24 bp):
GGTTTAGTTTAAGATTTTTTTTAG
Found at i:66967543 original size:25 final size:23
Alignment explanation
Indices: 66967507--66967562 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
66967497 GTTACCCTAT
66967507 TTTTA-TATTATATATTGAAAAATTA
1 TTTTATTA-TATATATT--AAAATTA
*
66967532 TTTTATTATATATATTAATATTA
1 TTTTATTATATATATTAAAATTA
66967555 -TTTATTAT
1 TTTTATTAT
66967563 CTATTGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
25 13 0.45
26 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTATTATATATATTAAAATTA
Found at i:66967835 original size:32 final size:27
Alignment explanation
Indices: 66967810--66967861 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
66967800 TATGTATATC
66967810 ATATATTA-TCTATTATATTATTTATGT
1 ATATATTATTC-ATTATATTATTTATGT
*
66967837 TTATATTATTCATTATATTATTTAT
1 ATATATTATTCATTATATTATTTAT
66967862 AATTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (27 bp):
ATATATTATTCATTATATTATTTATGT
Found at i:66971632 original size:50 final size:47
Alignment explanation
Indices: 66971572--66971668 Score: 167
Period size: 47 Copynumber: 2.0 Consensus size: 47
66971562 GTATTCCATA
66971572 TATATTTATTTTCCTCCTCCTCCTCTCTATTCCACATCCTTAATGTATAT
1 TATATTTATTTTCCTCCTCCT-CTC-C-ATTCCACATCCTTAATGTATAT
66971622 TATATTTATTTTCCTCCTCCTCTCCATTCCACATCCTTAATGTATAT
1 TATATTTATTTTCCTCCTCCTCTCCATTCCACATCCTTAATGTATAT
66971669 AGCATTCTTG
Statistics
Matches: 47, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 22 0.47
48 1 0.02
49 3 0.06
50 21 0.45
ACGTcount: A:0.21, C:0.30, G:0.02, T:0.47
Consensus pattern (47 bp):
TATATTTATTTTCCTCCTCCTCTCCATTCCACATCCTTAATGTATAT
Found at i:66975491 original size:14 final size:15
Alignment explanation
Indices: 66975472--66975521 Score: 61
Period size: 14 Copynumber: 3.5 Consensus size: 15
66975462 AATATTCTTT
66975472 TTTGCATC-CATGCA
1 TTTGCATCACATGCA
*
66975486 TTTGCATCTCATAGCA
1 TTTGCATCACAT-GCA
66975502 TTT-CATCACAT-CA
1 TTTGCATCACATGCA
66975515 TTTGCAT
1 TTTGCAT
66975522 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 11 0.34
15 10 0.31
16 6 0.19
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (15 bp):
TTTGCATCACATGCA
Found at i:66980595 original size:17 final size:17
Alignment explanation
Indices: 66980570--66980613 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
66980560 GTTGTGCGCT
*
66980570 GATTTAGACAACTCGAA
1 GATTAAGACAACTCGAA
66980587 GATTAAGACAACTCGAA
1 GATTAAGACAACTCGAA
66980604 GATTAAGACA
1 GATTAAGACA
66980614 GTACATGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.20
Consensus pattern (17 bp):
GATTAAGACAACTCGAA
Found at i:66983871 original size:184 final size:184
Alignment explanation
Indices: 66983562--66983925 Score: 665
Period size: 184 Copynumber: 2.0 Consensus size: 184
66983552 GATCCAAGAT
66983562 GACAGATCTTATCTCTCTGAATTCGGCAGGGAGCAGATCGGAGATATAGCTGATTTGGCTTTCAC
1 GACAGATCTTATCTCTCTGAATTCGGCAGGGAGCAGATCGGAGATATAGCTGATTTGGCTTTCAC
* * *
66983627 GTGTTTATGATGAAGCAAATCTAAGATGATTTGTTGCCTCTTTATTGTCAGAGAACAAATCGAAG
66 GTGTTTATGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCAAAG
* *
66983692 TTTGGCATTTCCACTTTAATGGAAGGTAGACACATAGCAGATCTCACCTTCAGG
131 TCTGGCATTTCCACTTTAATGGAAGGCAGACACATAGCAGATCTCACCTTCAGG
66983746 GACAGATCTTATCTCTCTGAATTCGGCAGGGAGCAGATCGGAGATATAGCTGATTTGGCTTTCAC
1 GACAGATCTTATCTCTCTGAATTCGGCAGGGAGCAGATCGGAGATATAGCTGATTTGGCTTTCAC
66983811 GTGTTTATGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCAAAG
66 GTGTTTATGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCAAAG
* *
66983876 TCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGTAGATCTCACCTT
131 TCTGGCATTTCCACTTTAATGGAAGGCAGACACATAGCAGATCTCACCTT
66983926 TAGATGTTTA
Statistics
Matches: 173, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
184 173 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (184 bp):
GACAGATCTTATCTCTCTGAATTCGGCAGGGAGCAGATCGGAGATATAGCTGATTTGGCTTTCAC
GTGTTTATGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCAAAG
TCTGGCATTTCCACTTTAATGGAAGGCAGACACATAGCAGATCTCACCTTCAGG
Found at i:66984110 original size:210 final size:210
Alignment explanation
Indices: 66983746--66984501 Score: 1014
Period size: 210 Copynumber: 3.6 Consensus size: 210
66983736 CACCTTCAGG
* *
66983746 GACAGATCTTATCTCTCTGAATTCGGCAGGGAGCAGATCGGAGATATAGCTGATTTGGCTTTCAC
1 GACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCAC
* *
66983811 GTGTTTATGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCAAAG
66 GTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
66983876 TCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGTAGATCTCACCTTTAGATGTTTACGCTG
131 TTTGGCATTTCCACTTTAATGGAAGGCAGACACATAGTAGATCTCACCTTCAGATGTTTACGCTG
66983941 AAGCAGATCCAAGAT
196 AAGCAGATCCAAGAT
66983956 GACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCAC
1 GACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCAC
* * *
66984021 GTGTTTATGATGAAGCAAATCTAAGATGATTTGTTGCCTCTTTATTGTCAGAGAACAAATCGAAG
66 GTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
66984086 TTTGGCATTTCCACTTTAATGGAAGGTAGACACATAGCAGATCTCACCTTCAGGTGTTTACGCTG
131 TTTGGCATTTCCACTTTAATGGAAGGCAGACACATAGTAGATCTCACCTTCAGATGTTTACGCTG
66984151 AAGCAGATCCAAGAT
196 AAGCAGATCCAAGAT
66984166 GACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCAC
1 GACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCAC
* * * *
66984231 GTGTTTACGATGAAGCAAATCTAAGATGATTTTTCGTCTCTGCATTGTCAGAGAACAAATC-AAA
66 GTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * * * * *
66984295 TTCTAGCATCTCTACTTCAATAG-AGTGCAGATACATAGTAGATCTGACCTTCAGACGATTA-GA
131 TT-TGGCATTTCCACTTTAATGGAAG-GCAGACACATAGTAGATCTCACCTTCAGATGTTTACG-
*
66984358 CTGAAACAAGATCCAAGA-
193 CTGAAGC-AGATCCAAGAT
* * * * * * *
66984376 G---GAT-TTGGCATC-CT-TGTGCTT--ACAAGGAGCAAATCAAAGACATAGCTGATTTAGCTT
1 GACAGATCTT---ATCTCTCTGT-ATTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTT
* ** *
66984433 TCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAAAACAAATC
62 TCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATC
66984498 GAAG
127 GAAG
66984502 AAGCAGATTT
Statistics
Matches: 493, Mismatches: 44, Indels: 21
0.88 0.08 0.04
Matches are distributed among these distances:
206 92 0.19
207 8 0.02
208 4 0.01
209 10 0.02
210 369 0.75
211 10 0.02
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (210 bp):
GACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCAC
GTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCGAAG
TTTGGCATTTCCACTTTAATGGAAGGCAGACACATAGTAGATCTCACCTTCAGATGTTTACGCTG
AAGCAGATCCAAGAT
Found at i:66986116 original size:25 final size:23
Alignment explanation
Indices: 66986080--66986135 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
66986070 TTTACCCTAT
66986080 TTTTA-TATTATATATTGAAAAATTA
1 TTTTATTA-TATATATT--AAAATTA
*
66986105 TTTTATTATATATATTAATATTA
1 TTTTATTATATATATTAAAATTA
66986128 -TTTATTAT
1 TTTTATTAT
66986136 CTATTGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
25 13 0.45
26 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTATTATATATATTAAAATTA
Found at i:66987698 original size:26 final size:26
Alignment explanation
Indices: 66987662--66987714 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
66987652 TTAGAAGCCT
66987662 TGGAACAAGGTTTTGATGAAATTAAG
1 TGGAACAAGGTTTTGATGAAATTAAG
66987688 TGGAACAAGGTTTTGATGAAATTAAG
1 TGGAACAAGGTTTTGATGAAATTAAG
66987714 T
1 T
66987715 TAAAACTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.26, T:0.32
Consensus pattern (26 bp):
TGGAACAAGGTTTTGATGAAATTAAG
Found at i:66993803 original size:36 final size:37
Alignment explanation
Indices: 66993703--66993804 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
66993693 CGAATAGTCC
* * *
66993703 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCAGGTCTTACCCGGACAAAATCT
*
66993740 CCACACGTAGTCATCAGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCAGGTCTTACCCGGACAAAATCT
66993777 CCACACGTAGTCATC-GGTCTTACCCGGA
1 CCACACGTAGTCATCAGGTCTTACCCGGA
66993805 ATATATTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 13 0.21
37 48 0.79
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCAGGTCTTACCCGGACAAAATCT
Found at i:66994006 original size:48 final size:48
Alignment explanation
Indices: 66993945--66995001 Score: 1952
Period size: 48 Copynumber: 21.9 Consensus size: 48
66993935 ATATACACAC
* * *
66993945 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
66993993 ATCTCATATATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994041 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66994089 ATCTCATACATATTTCACACTAGCCATTCGGCTTTGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATT---C---GGCTTTACCACATATACAT
* *
66994143 ATCTTATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994191 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994239 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994287 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994335 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994383 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994431 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994479 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994527 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994575 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994623 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994671 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994719 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994767 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994815 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
66994863 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66994911 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66994959 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
1 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATA
66995002 CATATATATT
Statistics
Matches: 990, Mismatches: 13, Indels: 12
0.98 0.01 0.01
Matches are distributed among these distances:
48 942 0.95
51 2 0.00
54 46 0.05
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:66997461 original size:50 final size:50
Alignment explanation
Indices: 66997385--66997523 Score: 169
Period size: 47 Copynumber: 2.8 Consensus size: 50
66997375 TTAACTTCGA
* * * *
66997385 TCACATGTGTAGTAGTAACTGCAGGCTACTACGTGTA-TCAGATGGTTAAG
1 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACT-AGATGGATAAG
* * *
66997435 TCACGTGTGTAGTACTAAGTGTAGG---CTACGTGTACTAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATGGATAAG
*
66997482 TCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACTAGA
1 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGA
66997524 GAGCTTCAGT
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
47 41 0.54
48 1 0.01
50 34 0.45
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATGGATAAG
Found at i:66997744 original size:16 final size:16
Alignment explanation
Indices: 66997723--66997754 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66997713 AGAATGGAGT
66997723 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
66997739 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
66997755 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:67000985 original size:119 final size:120
Alignment explanation
Indices: 67000803--67001025 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
67000793 TCCTCGTTCA
*
67000803 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
67000868 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
67000923 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGTCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
67000985 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
67001026 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:67001025 original size:40 final size:40
Alignment explanation
Indices: 67000801--67001025 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
67000791 GCTCCTCGTT
* *
67000801 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67000841 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67000881 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67000921 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
67000960 CAAATGTCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
67001001 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67001026 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 118 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:67002635 original size:193 final size:194
Alignment explanation
Indices: 67002305--67002688 Score: 743
Period size: 193 Copynumber: 2.0 Consensus size: 194
67002295 TCATGGCTGA
67002305 CCACTACTAATTAGGGGGGGAATTTGACATGCAAGTCCCCCCTTTTTATTTCATGCACTAATAGG
1 CCACTACTAATTAGGGGGGGAATTTGACATGCAAGTCCCCCCTTTTTATTTCATGCACTAATAGG
*
67002370 TCCTTATGCTTTGACCTATCACATTTCAAAATTTTCTCACATAAGTCCTATTGACTAAATTCACA
66 CCCTTATGCTTTGACCTATCACATTTCAAAATTTTCTCACATAAGTCCTATTGACTAAATTCACA
*
67002435 TGCAATCGACTAAATCGAAGCTTGAAATTTTCACACATTCATAATTACATATTCTAGACAACGG
131 TGCAATCGACTAAATCGAAGCTTGAAACTTTCACACATTCATAATTACATATTCTAGACAACGG
67002499 CCACTACTAATTA-GGGGGGAATTTGACATGCAAGTCCCCCCTTTTTATTTCATGCACTAATAGG
1 CCACTACTAATTAGGGGGGGAATTTGACATGCAAGTCCCCCCTTTTTATTTCATGCACTAATAGG
67002563 CCCTTATGCTTTGACCTATCACATTTCAAAATTTTCTCACATAAGTCCTATTGACTAAATTCACA
66 CCCTTATGCTTTGACCTATCACATTTCAAAATTTTCTCACATAAGTCCTATTGACTAAATTCACA
67002628 TGCAATCGACTAAATCGAAGCTTGAAACTTTCACACATTCATAATTACATATTCTAGACAA
131 TGCAATCGACTAAATCGAAGCTTGAAACTTTCACACATTCATAATTACATATTCTAGACAA
67002689 TAAATATCAC
Statistics
Matches: 188, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
193 175 0.93
194 13 0.07
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (194 bp):
CCACTACTAATTAGGGGGGGAATTTGACATGCAAGTCCCCCCTTTTTATTTCATGCACTAATAGG
CCCTTATGCTTTGACCTATCACATTTCAAAATTTTCTCACATAAGTCCTATTGACTAAATTCACA
TGCAATCGACTAAATCGAAGCTTGAAACTTTCACACATTCATAATTACATATTCTAGACAACGG
Found at i:67004171 original size:49 final size:49
Alignment explanation
Indices: 67004114--67004345 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
67004104 CTTATACGCA
*
67004114 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * ** * *
67004163 TAGTAGCCTGCACTTTGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
67004213 TAGTAGCCTGCACTTAATACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
* * * * *
67004264 TAGTAGCCCGCATTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
67004313 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
67004346 TCACAATAGA
Statistics
Matches: 149, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 69 0.46
50 45 0.30
51 35 0.23
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:67004340 original size:100 final size:99
Alignment explanation
Indices: 67004114--67004345 Score: 288
Period size: 100 Copynumber: 2.3 Consensus size: 99
67004104 CTTATACGCA
* * *
67004114 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCCGCACTTT
* *
67004179 GTACTACACACATGACCTAACCATCTGATACACG
66 GTACTACACACACGACCTAACCATCCGATACACG
* * * *
67004213 TAGTAGCCTGCACTTAATACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCCGCA-T
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCCGCACT
** ** * *
67004277 TTAGTACTACACATGCGACC-AATTATCCGGTACATG
64 TT-GTACTACACACACGACCTAACCATCCGATACACG
67004313 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
67004346 TCACAATAGA
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
99 30 0.27
100 47 0.42
101 36 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCCGCACTTT
GTACTACACACACGACCTAACCATCCGATACACG
Found at i:67022350 original size:80 final size:80
Alignment explanation
Indices: 67022209--67022470 Score: 334
Period size: 80 Copynumber: 3.3 Consensus size: 80
67022199 TATTCGGGTG
* * *
67022209 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-ACCGGGCTAAGTCCCGAAGG
*
67022272 CATTTGTGCGAGTTACT
64 CATTTGTGCAAGTTACT
*
67022289 ATACCCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
67022354 TTTTTGCAAGTTACT
66 TTTGTGCAAGTTACT
* * * * *
67022369 ATAACCGGGCTAAGTCCCGAAAGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCCTGAAGGCA
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
67022434 TTTGAGCAAG-TAGCT
66 TTTGTGCAAGTTA-CT
* * *
67022449 ATATCCG-GCTAAATTCCGAAGG
1 ATAACCGAGCTAAGTCCCGAAGG
67022471 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
79 15 0.09
80 145 0.90
81 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGCAAGTTACT
Found at i:67022451 original size:40 final size:40
Alignment explanation
Indices: 67022209--67022437 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
67022199 TATTCGGGTG
* *
67022209 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
67022249 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
67022289 ATACCCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
67022329 ATAACCGGGCTAAGTCCCGAAGGCATTTTTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
67022369 ATAACCGGGCTAAGTCCCGAAAGCACTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
67022409 ATAACCGGGCTAAGTCCTGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
67022438 AGCAAGTAGC
Statistics
Matches: 169, Mismatches: 18, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 167 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67022451 original size:120 final size:120
Alignment explanation
Indices: 67022209--67022470 Score: 350
Period size: 120 Copynumber: 2.2 Consensus size: 120
67022199 TATTCGGGTG
* * *
67022209 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAATACCGGGCTAAGTCCCGAAAGCA
* * * **
67022274 TTTGTGCGAGTTACTATACCCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
66 CTTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
* *
67022329 ATAACCGGGCTAAGTCCCGAAGGCATTTTTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAAGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAT-ACCGGGCTAAGTCCCGAAAGC
* *
67022393 ACTTGTGCGAGTTACTATAACCGGGCTAAGTCCTGAAGGCATTTGAGCAAG-TAGCT
65 ACTTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
67022449 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
67022471 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
119 18 0.14
120 107 0.86
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAATACCGGGCTAAGTCCCGAAAGCA
CTTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:67025717 original size:47 final size:47
Alignment explanation
Indices: 67025663--67026631 Score: 1832
Period size: 47 Copynumber: 20.6 Consensus size: 47
67025653 TATTTGAATA
67025663 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67025710 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67025757 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
67025806 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67025853 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67025900 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67025947 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67025994 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026088 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026135 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026182 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026229 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026276 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026323 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026370 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026417 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026464 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67026511 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
67026558 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGG-CGAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG-ATGTGATG
* *
67026605 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67026632 TCCCGAAGGG
Statistics
Matches: 908, Mismatches: 11, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
46 2 0.00
47 861 0.95
49 45 0.05
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:67032451 original size:46 final size:46
Alignment explanation
Indices: 67032384--67032558 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
67032374 TGTAACTCGC
* * * *
67032384 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
67032430 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
67032476 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
67032522 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67032559 TGCTCAACCA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67040432 original size:138 final size:138
Alignment explanation
Indices: 67040248--67040526 Score: 533
Period size: 138 Copynumber: 2.0 Consensus size: 138
67040238 TTAAGCCCTT
67040248 TTACTCGTTTTCACTCAAAACCGATAGCACAAGTTGTCTAACATAATTTAAAACCCCATATTCTA
1 TTACTCGTTTTCACTCAAAACCGATAGCACAAGTTGTCTAACATAATTTAAAACCCCATATTCTA
67040313 TCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAAGTTG
66 TCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAAGTTG
67040378 AATTA-TG
131 AATTATTG
*
67040385 TTACTCGTTTTCATTCAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCCCATATTCT
1 TTACTCGTTTTCACTCAAAACCGA-TAGCACAAGTTGTCTAACATAATTTAAAACCCCATATTCT
67040450 ATCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAAGTT
65 ATCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAAGTT
67040515 GAATTATTG
130 GAATTATTG
67040524 TTA
1 TTA
67040527 GCATAAGCTT
Statistics
Matches: 139, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
137 23 0.17
138 111 0.80
139 5 0.04
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (138 bp):
TTACTCGTTTTCACTCAAAACCGATAGCACAAGTTGTCTAACATAATTTAAAACCCCATATTCTA
TCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAAGTTG
AATTATTG
Found at i:67043128 original size:40 final size:41
Alignment explanation
Indices: 67043084--67043234 Score: 175
Period size: 40 Copynumber: 3.8 Consensus size: 41
67043074 GGATATAACT
* * *
67043084 ACTCGCTCAAATGCCTTTGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
* *
67043124 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
*
67043164 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT--AGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
* ** * *
67043203 ACTAGTGCAGATGCCTTCAGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
67043235 TTTTCATCCA
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 30 0.31
40 66 0.67
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
Found at i:67048046 original size:40 final size:40
Alignment explanation
Indices: 67047941--67048196 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
67047931 CGGATGATAA
* *
67047941 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
67047981 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67048020 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67048060 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
67048100 CCGGGCTAAATTCCAAAGGCACTTGTGCG-GTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67048139 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67048179 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67048197 TACTTGGTTT
Statistics
Matches: 194, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
39 85 0.44
40 109 0.56
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67048154 original size:119 final size:119
Alignment explanation
Indices: 67047943--67048163 Score: 329
Period size: 119 Copynumber: 1.9 Consensus size: 119
67047933 GATGATAACC
* * * *
67047943 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCACTTGTGC
*
67048008 TAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
66 TAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
* **
67048062 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAATTCCAAAGGCACTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCT-AAGCCCAAAGGCACTTGT
*
67048126 GC-GGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
64 GCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
67048164 AGCAAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
118 2 0.02
119 73 0.80
120 16 0.18
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (119 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCACTTGTGC
TAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
Done.