Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 202 of 276
Found at i:67048177 original size:79 final size:79
Alignment explanation
Indices: 67047937--67048202 Score: 315
Period size: 79 Copynumber: 3.4 Consensus size: 79
67047927 TATTCGGATG
* * * *
67047937 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAATCCCGAAGGCACTTGTGC-GGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
*
67048000 ATTTGTGCTAGTTACT
64 ATTTGTGCAAGTTACT
* * * *
67048016 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAATCCCGAAGGCACTTGTGCG-GTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
67048081 TTTGTGCGAGTTACT
65 TTTGTGCAAGTTACT
* * *
67048096 ATAACCGGGCTAAATTCCAAAGGCACTTGTGCGGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAATCCCGAAGGCACTTGTGCGGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
*
67048161 TTGAGCAAG-TAGCT
66 TTGTGCAAGTTA-CT
* * *
67048175 ATATCC-GGCTAAATTCCGAAGGTACTTG
1 ATAACCGGGCTAAATCCCGAAGGCACTTG
67048203 GTTTGGGAAT
Statistics
Matches: 166, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
78 22 0.13
79 91 0.55
80 53 0.32
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAATCCCGAAGGCACTTGTGCGGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCAAGTTACT
Found at i:67048177 original size:119 final size:118
Alignment explanation
Indices: 67047942--67048196 Score: 327
Period size: 119 Copynumber: 2.2 Consensus size: 118
67047932 GGATGATAAC
* * * *
67047942 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCACTTGTG
* * *
67048007 CTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 CTAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAT
* **
67048060 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAATTCCAAAGGCACTT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCT-AAGCCCAAAGGCACTT
*
67048124 GTGC-GGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
63 GTGCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CTATAT
* * *
67048179 CCGGCTAAATTCCGAAGG
1 CGGGCTAAGTCCCGAAGG
67048197 TACTTGGTTT
Statistics
Matches: 119, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
118 19 0.16
119 84 0.71
120 16 0.13
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (118 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCACTTGTG
CTAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAT
Found at i:67054003 original size:23 final size:23
Alignment explanation
Indices: 67053977--67054022 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
67053967 CATTCTCTTG
67053977 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACTATGC
* * *
67054000 TCATTCTCATGCTATTACTATGC
1 TCATACCCATGCCATTACTATGC
67054023 CAATGTCACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.30, G:0.09, T:0.37
Consensus pattern (23 bp):
TCATACCCATGCCATTACTATGC
Found at i:67061585 original size:38 final size:38
Alignment explanation
Indices: 67061534--67061614 Score: 126
Period size: 38 Copynumber: 2.1 Consensus size: 38
67061524 ATATTTGATG
* *
67061534 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
* *
67061572 TATATCCGGGTTAAATCCTGCAGGCCTAGTGTTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
67061610 TATAT
1 TATAT
67061615 TCAGGCCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.35
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
Found at i:67061667 original size:45 final size:45
Alignment explanation
Indices: 67061612--67061919 Score: 390
Period size: 45 Copynumber: 6.9 Consensus size: 45
67061602 GTTGGTATTA
* *
67061612 TATTCAGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
67061657 TATTCGGGCCTTTGAGCCTATCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * * *
67061702 TATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCAGTGAGACAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * * *
67061747 TATTCGGGCCTTTAAGCCTAGCAGGCTATGATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
67061792 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
67061837 TATTCAGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA-CAC
* * *
67061882 TAATCGGGCC-TCGAGCCTAGCAGG-TAAAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
67061920 TTTGAGAAAA
Statistics
Matches: 235, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
43 13 0.06
44 16 0.07
45 204 0.87
46 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:67067910 original size:17 final size:18
Alignment explanation
Indices: 67067885--67067924 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
67067875 CCATATTCCG
*
67067885 GCCCATGTGGGTCACAT-
1 GCCCATGTGGCTCACATA
*
67067902 GCCCGTGTGGCTCACATA
1 GCCCATGTGGCTCACATA
67067920 GCCCA
1 GCCCA
67067925 GAAATAGCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.17, C:0.35, G:0.28, T:0.20
Consensus pattern (18 bp):
GCCCATGTGGCTCACATA
Found at i:67071783 original size:49 final size:49
Alignment explanation
Indices: 67071714--67072490 Score: 1210
Period size: 49 Copynumber: 16.1 Consensus size: 49
67071704 GAAATGATAG
*
67071714 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67071763 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67071812 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
67071861 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
67071908 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
67071955 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT--ATGTGA
*
67072006 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
** * *
67072057 T--GGC-CGAT-G-TGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
67072099 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
67072150 T--GGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67072197 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67072246 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67072295 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67072344 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67072393 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * ** * * * *
67072440 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67072487 TAAG
1 TAAG
67072491 TCCCGAAGGG
Statistics
Matches: 684, Mismatches: 25, Indels: 40
0.91 0.03 0.05
Matches are distributed among these distances:
42 11 0.02
44 3 0.00
45 2 0.00
46 22 0.03
47 173 0.25
48 3 0.00
49 404 0.59
51 59 0.09
53 7 0.01
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.31
Consensus pattern (49 bp):
TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:67072664 original size:37 final size:37
Alignment explanation
Indices: 67072608--67072686 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
67072598 CCGAGCTCTA
* * *
67072608 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
67072645 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67072682 AAGAC
1 AAGAC
67072687 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67079458 original size:27 final size:26
Alignment explanation
Indices: 67079427--67079544 Score: 87
Period size: 27 Copynumber: 4.4 Consensus size: 26
67079417 TGGATAAGTT
*
67079427 GTAGAATTACCAAAATACCCCTATAG
1 GTAGAATTACCGAAATACCCCTATAG
* *
67079453 GATAGAATTATCGAAATACCCTTGCAT-G
1 G-TAGAATTACCGAAATACCCCT--ATAG
* *
67079481 GTAGAAATACTGAAATA-CCCTATAGG
1 GTAGAATTACCGAAATACCCCTATA-G
* * * *
67079507 GTAGAATTATCGAGATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTATA-G
*
67079534 GTAAAATTACC
1 GTAGAATTACC
67079545 ATTTTGCCCC
Statistics
Matches: 71, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
24 2 0.03
26 18 0.25
27 47 0.66
28 2 0.03
29 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (26 bp):
GTAGAATTACCGAAATACCCCTATAG
Found at i:67097524 original size:49 final size:47
Alignment explanation
Indices: 67097373--67097542 Score: 207
Period size: 48 Copynumber: 3.5 Consensus size: 47
67097363 TATGTATGCT
* * *
67097373 AGTGTAAGACATGTCTGGGACATGCATCGACCTCG-AGTTATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCA-ATA-TAAAGCC
* * *
67097421 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCCCGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCAATATA-AAGCC
* *
67097469 AGTGTAAGACCTGTCTGGGACATAGCATCGGTCTCGCAATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGCAATAT-AAAGCC
67097518 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
67097543 GCGTTAGCAT
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
47 1 0.01
48 61 0.58
49 29 0.28
50 14 0.13
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCAATATAAAGCC
Found at i:67102665 original size:48 final size:48
Alignment explanation
Indices: 67102606--67102732 Score: 173
Period size: 48 Copynumber: 2.6 Consensus size: 48
67102596 TATGTATGCT
* **
67102606 AGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATTTAAGCA
1 AGTGTAAGACATGTCTGGGACATGCATCAACCTCCAGATATACAAGCA
** * *
67102654 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCCCGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAACCTCCAGATATACAAGCA
*
67102702 AGTGTAAGACCTGTCTGGGACATGGCATCAA
1 AGTGTAAGACATGTCTGGGACAT-GCATCAA
67102733 ATTGTGGTGT
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
48 63 0.93
49 5 0.07
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACCTCCAGATATACAAGCA
Found at i:67113576 original size:103 final size:103
Alignment explanation
Indices: 67113397--67113589 Score: 359
Period size: 103 Copynumber: 1.9 Consensus size: 103
67113387 ATTATACTTT
* *
67113397 GTGGTTATTGTTGAGTAATATGCAAATTATGTTTATTACTTGTTAAATATGAATTGCTACCGAGT
1 GTGGTTAATGTTGAGTAATATGCAAATTATGTTTACTACTTGTTAAATATGAATTGCTACCGAGT
67113462 ATCGGTTTCAATATTCCGTGGAAGACGGTAAAGATGTG
66 ATCGGTTTCAATATTCCGTGGAAGACGGTAAAGATGTG
67113500 GTGGTTAATGTTGAGTAATATGCAAATTATGTTTACTACTTGTTAAATATGAATTGCTACCGAGT
1 GTGGTTAATGTTGAGTAATATGCAAATTATGTTTACTACTTGTTAAATATGAATTGCTACCGAGT
*
67113565 ATCGGTTTCAATATTTCGTGGAAGA
66 ATCGGTTTCAATATTCCGTGGAAGA
67113590 TAGAAAAGAT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 87 1.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (103 bp):
GTGGTTAATGTTGAGTAATATGCAAATTATGTTTACTACTTGTTAAATATGAATTGCTACCGAGT
ATCGGTTTCAATATTCCGTGGAAGACGGTAAAGATGTG
Found at i:67133590 original size:29 final size:29
Alignment explanation
Indices: 67133546--67133605 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
67133536 TTCACATGCG
* * *
67133546 AAGCCTCGTCCAACTTTCGCTTATTTGCT
1 AAGCCTCGTCCAACTTCCACGTATTTGCT
* *
67133575 AAGCGTCGTCCGACTTCCACGTATTTGCT
1 AAGCCTCGTCCAACTTCCACGTATTTGCT
67133604 AA
1 AA
67133606 AAGCTCCTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (29 bp):
AAGCCTCGTCCAACTTCCACGTATTTGCT
Found at i:67144195 original size:29 final size:29
Alignment explanation
Indices: 67144130--67144258 Score: 118
Period size: 29 Copynumber: 4.4 Consensus size: 29
67144120 TGATCGACAA
*
67144130 ATGAAAAGGGATAGCTTTGGGTATCGAA-T
1 ATGAAAAGGGATAGCTTTGGCTATC-AATT
* * **
67144159 ACGGAAAGGGATAGCTTTGGCTATTGATT
1 ATGAAAAGGGATAGCTTTGGCTATCAATT
* * * * *
67144188 ATGAAAAGGTATAG-TGATGACCATCAATA
1 ATGAAAAGGGATAGCT-TTGGCTATCAATT
*
67144217 ATGAAAAGGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTTTGGCTATC-AATT
67144247 ATGAAAAGGGAT
1 ATGAAAAGGGAT
67144259 GTTGACGACC
Statistics
Matches: 76, Mismatches: 20, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
28 2 0.03
29 58 0.76
30 16 0.21
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTTGGCTATCAATT
Found at i:67144303 original size:60 final size:59
Alignment explanation
Indices: 67144185--67144320 Score: 168
Period size: 60 Copynumber: 2.3 Consensus size: 59
67144175 TTGGCTATTG
* * * * *
67144185 ATTATGAAAAGGTATAGTGATGACCATCAATAATGAAAAGGGATAGCTTCGGCTATCAA
1 ATTATGAAAAGGGATAGTGACGACCATCAATAATGAAAAGGGATAGCTACGACCATCAA
*
67144244 ATTATGAAAAGGGAT-GTTGACGACCATCGAATAATGAAAAGGGAT-GGTGACGACCATCAA
1 ATTATGAAAAGGGATAG-TGACGACCATC-AATAATGAAAAGGGATAGCT-ACGACCATCAA
67144304 ATTATGAAAAAGGGATA
1 ATTATG-AAAAGGGATA
67144321 ACTTTGGTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
58 1 0.02
59 26 0.39
60 30 0.45
61 9 0.14
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.23
Consensus pattern (59 bp):
ATTATGAAAAGGGATAGTGACGACCATCAATAATGAAAAGGGATAGCTACGACCATCAA
Found at i:67144318 original size:31 final size:30
Alignment explanation
Indices: 67144185--67144319 Score: 139
Period size: 30 Copynumber: 4.5 Consensus size: 30
67144175 TTGGCTATTG
* * *
67144185 ATTATGAAAAGGTATAGTGATGACCATC-A
1 ATTATGAAAAGGGATGGTGACGACCATCAA
* * * * *
67144214 ATAATGAAAAGGGATAGCT-TCGGCTATCAA
1 ATTATGAAAAGGGAT-GGTGACGACCATCAA
* *
67144244 ATTATGAAAAGGGATGTTGACGACCATCGA
1 ATTATGAAAAGGGATGGTGACGACCATCAA
*
67144274 ATAATGAAAAGGGATGGTGACGACCATCAA
1 ATTATGAAAAGGGATGGTGACGACCATCAA
67144304 ATTATGAAAAAGGGAT
1 ATTATG-AAAAGGGAT
67144320 AACTTTGGTT
Statistics
Matches: 84, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
29 20 0.24
30 55 0.65
31 9 0.11
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.23
Consensus pattern (30 bp):
ATTATGAAAAGGGATGGTGACGACCATCAA
Found at i:67144350 original size:91 final size:89
Alignment explanation
Indices: 67144188--67144351 Score: 211
Period size: 91 Copynumber: 1.8 Consensus size: 89
67144178 GCTATTGATT
* * * **
67144188 ATGAAAAGGTATAGTGATGACCATCAATAATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAA
1 ATGAAAAGGGATAGTGACGACCATCAATAATGAAAAGGGATAACTTCGGCTATCAAATTAAAAAA
67144253 AGGGATGTTGACGACCATCGAATA
66 AGGGATGTTGACGACCATCGAATA
* * * * *
67144277 ATGAAAAGGGATGGTGACGACCATCAAATTATGAAAAAGGGATAACTTTGGTTATCGAATTAAAA
1 ATGAAAAGGGATAGTGACGACCATC-AATAATG-AAAAGGGATAACTTCGGCTATCAAATTAAAA
*
67144342 AAATGGATGT
64 AAAGGGATGT
67144352 GTCAACCATC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
89 22 0.35
90 6 0.10
91 34 0.55
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (89 bp):
ATGAAAAGGGATAGTGACGACCATCAATAATGAAAAGGGATAACTTCGGCTATCAAATTAAAAAA
AGGGATGTTGACGACCATCGAATA
Found at i:67145735 original size:43 final size:43
Alignment explanation
Indices: 67145636--67145760 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 43
67145626 TCTGAGACGT
* *
67145636 TGGCATCGACT-TATGATTTACGTGTAAGACCACGTCTGGGACAT
1 TGGCATCGA-TATTTGATTT-CGTGTAAGACCACGTCTGGGACAG
**
67145680 TGGCATCG-TATTTGATTTCGTGTAAGACCTTGTCTGGGACAG
1 TGGCATCGATATTTGATTTCGTGTAAGACCACGTCTGGGACAG
* *
67145722 TGGCATCGATATTTGATTACATGTAAGACCACGTCTGGG
1 TGGCATCGATATTTGATTTCGTGTAAGACCACGTCTGGG
67145761 TTATCAGCAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
42 30 0.42
43 33 0.46
44 8 0.11
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
TGGCATCGATATTTGATTTCGTGTAAGACCACGTCTGGGACAG
Found at i:67153984 original size:31 final size:31
Alignment explanation
Indices: 67153949--67154009 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
67153939 TGAATGGGTG
67153949 CAGTTAGGAGACTGCACATAAATGTTTAGTA
1 CAGTTAGGAGACTGCACATAAATGTTTAGTA
67153980 CAGTTAGGAGACTGCACATAAATGTTTAGT
1 CAGTTAGGAGACTGCACATAAATGTTTAGT
67154010 CGTTCAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (31 bp):
CAGTTAGGAGACTGCACATAAATGTTTAGTA
Found at i:67155528 original size:27 final size:27
Alignment explanation
Indices: 67155456--67155603 Score: 161
Period size: 27 Copynumber: 5.5 Consensus size: 27
67155446 TGGGCCAGAA
* * * **
67155456 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* * *
67155483 GGTAAAATGAATGAAATACCCCTATAG
1 GGTAAAATGACTGTAATACCCCTGTAG
*
67155510 GGTAAAATGACTGTGATACCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* * *
67155537 AGTAAAATTACTGTAATACCCTTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* *
67155564 GGTCAAATGACTGTAATACCCCTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAG
*
67155591 GGCAAAATGACTG
1 GGTAAAATGACTG
67155604 ATTTGCTACG
Statistics
Matches: 102, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTGTAG
Found at i:67156045 original size:34 final size:33
Alignment explanation
Indices: 67155972--67156051 Score: 92
Period size: 33 Copynumber: 2.4 Consensus size: 33
67155962 TTGATTCTAT
*
67155972 AATGGGCTTAGGCCCCATTGATACTGTTACTGA
1 AATGGGCTTAGGCCCCACTGATACTGTTACTGA
* * *
67156005 AATGGGCTTAGGCCCACACTGTTTCTGATT-TTGA
1 AATGGGCTTAGGCCC-CACTGATACTG-TTACTGA
67156039 AATGGGC-TAGGCC
1 AATGGGCTTAGGCC
67156052 TTAACTGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
33 21 0.51
34 18 0.44
35 2 0.05
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (33 bp):
AATGGGCTTAGGCCCCACTGATACTGTTACTGA
Found at i:67176060 original size:5 final size:6
Alignment explanation
Indices: 67176047--67176087 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
67176037 ATAATTTAAT
67176047 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
67176088 ATATATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:67176081 original size:21 final size:22
Alignment explanation
Indices: 67176024--67176081 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 22
67176014 CAACCCAATC
*
67176024 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAA-TA-AAA-AATCTAATAA
67176049 ATAAAAAT-AAAAATCTAA-AA
1 ATAAAAATAAAAAATCTAATAA
67176069 ATAAAAATAAAAA
1 ATAAAAATAAAAA
67176082 TAAAAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 10 0.32
21 10 0.32
22 3 0.10
24 1 0.03
25 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAAATAAAAAATCTAATAA
Found at i:67176088 original size:20 final size:20
Alignment explanation
Indices: 67176047--67176088 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
67176037 ATAATTTAAT
**
67176047 AAATAAAAATAAAAATCTAA
1 AAATAAAAATAAAAATAAAA
67176067 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
67176087 AA
1 AA
67176089 TATATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:67176121 original size:9 final size:9
Alignment explanation
Indices: 67176107--67176183 Score: 77
Period size: 9 Copynumber: 8.6 Consensus size: 9
67176097 TTTATACAAA
67176107 TAATTCGGT
1 TAATTCGGT
67176116 TAATTCGGT
1 TAATTCGGT
*
67176125 TAATTTGAG-
1 TAATTCG-GT
*
67176134 TAATTCGGG
1 TAATTCGGT
67176143 TAATTCGAG-
1 TAATTCG-GT
**
67176152 TAATTCAAT
1 TAATTCGGT
*
67176161 TAATTCAGT
1 TAATTCGGT
67176170 TAATTCGGT
1 TAATTCGGT
67176179 TAATT
1 TAATT
67176184 TTATACTTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
8 1 0.02
9 55 0.95
10 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (9 bp):
TAATTCGGT
Found at i:67176146 original size:27 final size:27
Alignment explanation
Indices: 67176107--67176184 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
67176097 TTTATACAAA
*
67176107 TAATTCGGTTAATTCGGTTAATTTGAG
1 TAATTCGGTTAATTCGGTTAATTTAAG
* * *
67176134 TAATTCGGGTAATTCGAG-TAATTCAAT
1 TAATTCGGTTAATTCG-GTTAATTTAAG
*
67176161 TAATTCAGTTAATTCGGTTAATTT
1 TAATTCGGTTAATTCGGTTAATTT
67176185 TATACTTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (27 bp):
TAATTCGGTTAATTCGGTTAATTTAAG
Found at i:67176520 original size:44 final size:42
Alignment explanation
Indices: 67176444--67176566 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
67176434 ATATGTGTTA
* * * * * *
67176444 TCGTGTAAGACGACGTCTGGCACGTTGACATCGATTTGTGATT
1 TCGTGTAAGACCATGTCTGG-ACATTGGCATCGATATATGATT
67176487 TACGTGTAAGACCATGTCTAGGACATTGGCATCG-TATATGATT
1 T-CGTGTAAGACCATGTCT-GGACATTGGCATCGATATATGATT
* * *
67176530 TCGTGTAAGACCCTATCTGGGACAGTGGCATCGATAT
1 TCGTGTAAGACCATGTCT-GGACATTGGCATCGATAT
67176567 TTTATTACAT
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.42
43 12 0.18
44 25 0.37
45 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGACATTGGCATCGATATATGATT
Found at i:67177328 original size:9 final size:9
Alignment explanation
Indices: 67177316--67177366 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
67177306 ATGGCTTACT
67177316 AAGCTTTCA
1 AAGCTTTCA
*
67177325 AAGC-TTAA
1 AAGCTTTCA
67177333 TAAGCTTTCA
1 -AAGCTTTCA
* *
67177343 AAGCTTACT
1 AAGCTTTCA
67177352 AAGCTTTCA
1 AAGCTTTCA
*
67177361 ACGCTT
1 AAGCTT
67177367 ACTCTGTGTG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
8 3 0.09
9 27 0.82
10 3 0.09
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (9 bp):
AAGCTTTCA
Found at i:67177336 original size:18 final size:18
Alignment explanation
Indices: 67177309--67177369 Score: 104
Period size: 18 Copynumber: 3.4 Consensus size: 18
67177299 TTTTCTTATG
67177309 GCTTACTAAGCTTTCAAA
1 GCTTACTAAGCTTTCAAA
*
67177327 GCTTAATAAGCTTTCAAA
1 GCTTACTAAGCTTTCAAA
*
67177345 GCTTACTAAGCTTTCAAC
1 GCTTACTAAGCTTTCAAA
67177363 GCTTACT
1 GCTTACT
67177370 CTGTGTGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.34
Consensus pattern (18 bp):
GCTTACTAAGCTTTCAAA
Found at i:67181768 original size:40 final size:38
Alignment explanation
Indices: 67181713--67181930 Score: 199
Period size: 40 Copynumber: 5.5 Consensus size: 38
67181703 TGGATGATAA
* *
67181713 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTT-CGCGAGTTACTA-TT
*
67181753 CCGGGCTAAGTCCCGAAGGCGTTTCTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTC-GCGAGTTACTAT-T
*
67181793 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTT-CGCGAGTTACTA-TT
* * *
67181833 CCGGGCTAAGTCCTGAAGGAAATTGT-GCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGG-CATT-TCGCGAGTTACTAT-T
* * *
67181873 CCGAGCTAAGTCCCGTAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTT-CGCGAGTTA-CTAT-T
* *
67181913 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67181931 TACTTGGCTT
Statistics
Matches: 151, Mismatches: 17, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
38 1 0.01
39 20 0.13
40 125 0.83
41 4 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGAAGGCATTTCGCGAGTTACTATT
Found at i:67181851 original size:80 final size:80
Alignment explanation
Indices: 67181709--67181904 Score: 268
Period size: 80 Copynumber: 2.5 Consensus size: 80
67181699 TGTTTGGATG
* *
67181709 ATAACCGGGCTAAGTCCCGAAGGCATTT-ACGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGA
**
67181773 GTTTCTGCGAGTTACT
65 AATTCTGCGAGTTACT
* * * * *
67181789 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCTGAAGGAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGAA
*
67181854 ATTGTGCGAGTTACT
66 ATTCTGCGAGTTACT
* *
67181869 ATAACCGAGCTAAGTCCCGTAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
67181905 AGCTATATCC
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 101 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGAA
ATTCTGCGAGTTACT
Found at i:67181916 original size:80 final size:79
Alignment explanation
Indices: 67181709--67181930 Score: 254
Period size: 80 Copynumber: 2.8 Consensus size: 79
67181699 TGTTTGGATG
*
67181709 ATAACCGGGCTAAGTCCCGAAGGCATTT-ACGCTAGT-GACTAGTTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTAG-CTA-TTCCGGGCTAAGTCCCGAAGG
***
67181772 CGTTTCTGCGAGTTACT
63 AAATTCTGCGAGTTACT
* * *
67181789 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTTCCGGGCTAAGTCCTGAAGGA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTA-TTCCGGGCTAAGTCCCGAAGGA
*
67181853 AATTGTGCGAGTTACT
64 AATTCTGCGAGTTACT
* * * *
67181869 ATAACCGAGCTAAGTCCCGTAGGCATTTGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTAT-TCCGGGCTAAGTCCCGAAGG
67181931 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 16 0.13
80 104 0.86
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATTCCGGGCTAAGTCCCGAAGGAAA
TTCTGCGAGTTACT
Found at i:67188845 original size:80 final size:80
Alignment explanation
Indices: 67188709--67188886 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
67188699 TGGATGATAA
* * *
67188709 CCGGGCTAAGTCCCAAAGGCATTTACGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCAAAGGCATTTACGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
*
67188774 TGCGAGTTACTATAT
66 AGCGAGTTACTATAT
* ** * *
67188789 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTTCCGAAGGCATTT
1 CCGGGCTAAGTCCCAAAGGCATTTACGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
*
67188853 GAGCGAG-TAGCTCTAT
65 GAGCGAGTTA-CTATAT
* *
67188869 CC-GGTTAAATCCCAAAGG
1 CCGGGCTAAGTCCCAAAGG
67188887 TACTTGGCTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 16 0.19
80 67 0.81
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCAAAGGCATTTACGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
AGCGAGTTACTATAT
Found at i:67188872 original size:40 final size:40
Alignment explanation
Indices: 67188709--67188860 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
67188699 TGGATGATAA
* ** * *
67188709 CCGGGCTAAGTCCCAAAGGCATTTACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
67188749 CTGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67188789 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67188829 CCGGGCTAAGTTCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67188861 AGCTCTATCC
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 99 0.99
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67198948 original size:43 final size:43
Alignment explanation
Indices: 67198898--67198984 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
67198888 TGATATATGT
* * *
67198898 AGCATCCGAGCTTGTTGAGTGGTCCGACTTCATTATGTATGCG
1 AGCATCCGAGCTTGTTGAATGGTCCGACTTCATAATGGATGCG
*
67198941 AGCATCCGAGCTTGTTGAATGGTCCGAGTTCATAATGGATGCG
1 AGCATCCGAGCTTGTTGAATGGTCCGACTTCATAATGGATGCG
67198984 A
1 A
67198985 TACATGTGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (43 bp):
AGCATCCGAGCTTGTTGAATGGTCCGACTTCATAATGGATGCG
Found at i:67203617 original size:40 final size:40
Alignment explanation
Indices: 67203509--67203639 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
67203499 TCTTCGGAAT
* * *
67203509 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * * * * *
67203548 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * * *
67203588 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCAGGAC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
67203628 TTAGCCCGGATA
1 TTAGCCCGGATA
67203640 TCATTCAAAT
Statistics
Matches: 74, Mismatches: 17, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
39 3 0.04
40 71 0.96
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
Found at i:67203855 original size:80 final size:80
Alignment explanation
Indices: 67203722--67204095 Score: 694
Period size: 80 Copynumber: 4.7 Consensus size: 80
67203712 CAAACACAAT
*
67203722 GGGTCTTAGCCCGGATAAAATCACCAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
67203787 CGCACAAATGCCTTC
66 CGCACAAATGCCTTC
67203802 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
67203867 CGCACAAATGCCTTC
66 CGCACAAATGCCTTC
67203882 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
67203947 CGCACAAATGCCTTC
66 CGCACAAATGCCTTC
67203962 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
67204027 CGCACAAATGCCTTC
66 CGCACAAATGCCTTC
* * * * *
67204042 GGGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCAGGACTTAGCCCGG
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
67204096 ATATCATTCA
Statistics
Matches: 288, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 288 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
CGCACAAATGCCTTC
Found at i:67204076 original size:40 final size:40
Alignment explanation
Indices: 67203722--67204098 Score: 438
Period size: 40 Copynumber: 9.4 Consensus size: 40
67203712 CAAACACAAT
* *
67203722 GGGTCTTAGCCCGGATAAAATCACCAGCACAATTGCCTTC
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTC
* * * * *
67203762 GGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTC
1 GGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTC
*
67203802 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTC
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTC
* * * * *
67203842 GGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTC
1 GGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTC
*
67203882 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTC
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTC
* * * * *
67203922 GGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTC
1 GGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTC
*
67203962 GGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTC
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTC
* * * * *
67204002 GGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTC
1 GGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTC
*
67204042 GGGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTC
1 GGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTC
* *
67204082 AGGACTTAGCCCGGATA
1 GGGTCTTAGCCCGGATA
67204099 TCATTCAAAT
Statistics
Matches: 278, Mismatches: 51, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
39 12 0.04
40 254 0.91
41 12 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
GGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTC
Found at i:67212280 original size:120 final size:120
Alignment explanation
Indices: 67212063--67212553 Score: 833
Period size: 120 Copynumber: 4.1 Consensus size: 120
67212053 TCTTCGGAAT
* * * *
67212063 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCAGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67212127 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
*
67212182 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67212247 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
*
67212302 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGTAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
* * *
67212367 AAACGCCTTAGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
*
67212422 TTAGCCCGGATAAAATCACCAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
* * * *
67212487 AAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGAGAC
66 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTAGCACAAATGCCTTCGGGTC
67212542 TTAGCCCGGATA
1 TTAGCCCGGATA
67212554 TCATTCAAAT
Statistics
Matches: 351, Mismatches: 19, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
119 4 0.01
120 343 0.98
121 4 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
Found at i:67212551 original size:40 final size:41
Alignment explanation
Indices: 67212082--67212553 Score: 545
Period size: 40 Copynumber: 11.8 Consensus size: 41
67212072 TATAACCACA
* * * *
67212082 AGCACAATTGCCTTCGGGTCTTAACCCAGG-T-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCC-GGATAAAATCAACT
* *
67212122 CGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
67212162 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
* * * * * *
67212202 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAATT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
* *
67212242 CGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
67212282 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
* * * * *
67212322 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGT-AACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
* * * *
67212362 CGCACAAACGCCTTAGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
* *
67212402 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
* * * * *
67212442 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
*
67212482 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
* * *
67212522 AGCATAAATGCCTTCGAGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
67212554 TCATTCAAAT
Statistics
Matches: 368, Mismatches: 55, Indels: 18
0.83 0.12 0.04
Matches are distributed among these distances:
39 9 0.02
40 344 0.93
41 15 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCAACT
Found at i:67221727 original size:27 final size:27
Alignment explanation
Indices: 67221696--67221873 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67221686 TAAATTGTAC
67221696 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67221723 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67221749 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67221777 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67221805 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67221832 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67221859 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67221874 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67221810 original size:82 final size:81
Alignment explanation
Indices: 67221697--67221852 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67221687 AAATTGTACA
* *
67221697 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67221761 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67221778 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67221843 TGCGAGTTGA
65 TGCGAATTGA
67221853 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67221864 original size:82 final size:81
Alignment explanation
Indices: 67221693--67221873 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67221683 GATTAAATTG
* *
67221693 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67221758 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67221774 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67221838 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67221856 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67221874 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67224224 original size:43 final size:43
Alignment explanation
Indices: 67224177--67224279 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 43
67224167 CAACGAACTT
** **
67224177 GCACACTTAGTGCTGATTAATTAGTTGAA-ACTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAG-CCAAGACTATAATTGTATC
* * * *
67224220 GCACAATTTGTTCCAATTAATTAGCCAAGTCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAGCCAAGACTATAATTGTATC
*
67224263 GCACACTTAATGCCAAT
1 GCACACTTAGTGCCAAT
67224280 ACATTAAACT
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 2 0.04
43 45 0.96
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (43 bp):
GCACACTTAGTGCCAATTAATTAGCCAAGACTATAATTGTATC
Found at i:67228070 original size:14 final size:16
Alignment explanation
Indices: 67228051--67228089 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
67228041 TTATGGCTAC
67228051 TATTTTTA-AATTGA-
1 TATTTTTATAATTGAT
67228065 TATTTTTATTAATTGAT
1 TATTTTTA-TAATTGAT
67228082 TATTTTTA
1 TATTTTTA
67228090 GAAAATCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (16 bp):
TATTTTTATAATTGAT
Found at i:67231067 original size:10 final size:10
Alignment explanation
Indices: 67231052--67231078 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
67231042 AAGTATATGT
67231052 TATGAGTCGA
1 TATGAGTCGA
67231062 TATGAGTCGA
1 TATGAGTCGA
67231072 TATGAGT
1 TATGAGT
67231079 AATGTGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33
Consensus pattern (10 bp):
TATGAGTCGA
Found at i:67231571 original size:45 final size:44
Alignment explanation
Indices: 67231482--67231571 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
67231472 GAATTATGTA
*
67231482 ATCTAAACTCATTGAGTTGTGTCTGAGTTCATGATATAGGTGAC
1 ATCTAAACTCATTGAGTTGTGTCTGAGTTCATGATATAGATGAC
*
67231526 ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATAT-GTATGAC
1 ATCTAAACTCATTGAGTTGT-GTCTGAGTTCATGATATAG-ATGAC
67231571 A
1 A
67231572 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
44 20 0.48
45 22 0.52
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (44 bp):
ATCTAAACTCATTGAGTTGTGTCTGAGTTCATGATATAGATGAC
Found at i:67240135 original size:23 final size:24
Alignment explanation
Indices: 67240086--67240135 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
67240076 TTCTAGAAGG
* *
67240086 TTTAGTATTTATGAGTATAATATA
1 TTTAGCATTTATGAGCATAATATA
*
67240110 TTTAGCATTTATTAGCAT-ATATA
1 TTTAGCATTTATGAGCATAATATA
67240133 TTT
1 TTT
67240136 GACTTTGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.34, C:0.04, G:0.10, T:0.52
Consensus pattern (24 bp):
TTTAGCATTTATGAGCATAATATA
Found at i:67240852 original size:20 final size:19
Alignment explanation
Indices: 67240829--67240874 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
67240819 TTTTTTGAGA
67240829 GAAAGAATAAAATTTTCTGG
1 GAAAGAA-AAAATTTTCTGG
* **
67240849 GAAAGGAAAGCTTTTCTGG
1 GAAAGAAAAAATTTTCTGG
67240868 GAAAGAA
1 GAAAGAA
67240875 CAGCAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.43, C:0.07, G:0.26, T:0.24
Consensus pattern (19 bp):
GAAAGAAAAAATTTTCTGG
Found at i:67242359 original size:12 final size:12
Alignment explanation
Indices: 67242342--67242366 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67242332 TTAAAAATTC
67242342 TAAATTTTAAAA
1 TAAATTTTAAAA
67242354 TAAATTTTAAAA
1 TAAATTTTAAAA
67242366 T
1 T
67242367 CCAAAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAATTTTAAAA
Found at i:67243388 original size:24 final size:24
Alignment explanation
Indices: 67243361--67243409 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
67243351 AAATCATCAC
*
67243361 ATTATAGAGTTGTTAATCTAGTAA
1 ATTATAGAGTTGATAATCTAGTAA
*
67243385 ATTATAGAGTTGATAATTTAGTAA
1 ATTATAGAGTTGATAATCTAGTAA
67243409 A
1 A
67243410 ATCAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (24 bp):
ATTATAGAGTTGATAATCTAGTAA
Found at i:67251321 original size:14 final size:14
Alignment explanation
Indices: 67251300--67251340 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
67251290 TTGCAACTTG
67251300 CACAACTTGCACAT
1 CACAACTTGCACAT
** *
67251314 TGCAACTTGCAAAT
1 CACAACTTGCACAT
67251328 CACAACTTGCACA
1 CACAACTTGCACA
67251341 AGTAGGTAAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.32, G:0.10, T:0.22
Consensus pattern (14 bp):
CACAACTTGCACAT
Found at i:67253891 original size:205 final size:205
Alignment explanation
Indices: 67253539--67253950 Score: 770
Period size: 205 Copynumber: 2.0 Consensus size: 205
67253529 CGCCCGTGTC
*
67253539 CATAAACCGTGTCCTTCACACGGCCATCACCTGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
1 CATAAACCGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
* * *
67253604 GACGTTAGCAATCCTTAAGGGCCACACGGCCAAGGCACACGCCCTTGTGCTAGACCCTGCCCTTC
66 GACGTCAGCAATCCTTAAGGGCCACACAGCCAAGGCACACGCCCTTGTGCTAAACCCTGCCCTTC
*
67253669 ACACGGCTGAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCGTACTGACTTGAAA
131 ACACGGCTGAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
67253734 TTTTTATGTG
196 TTTTTATGTG
67253744 CATAAACCGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
1 CATAAACCGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
67253809 GACGTCAGCAATCCTTAAGGGCCACACAGCCAAGGCACACGCCCTTGTGCTAAACCCTGCCCTTC
66 GACGTCAGCAATCCTTAAGGGCCACACAGCCAAGGCACACGCCCTTGTGCTAAACCCTGCCCTTC
*
67253874 ACACGGCTGAGGCACACGGCAGTGTCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
131 ACACGGCTGAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
67253939 TTTTTATGTG
196 TTTTTATGTG
67253949 CA
1 CA
67253951 GGGGACACAC
Statistics
Matches: 201, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
205 201 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (205 bp):
CATAAACCGTGTCCTTCACACGGCCATCACCCGCTGGTGTGTAAAAACTTGGACATTATGTTTCC
GACGTCAGCAATCCTTAAGGGCCACACAGCCAAGGCACACGCCCTTGTGCTAAACCCTGCCCTTC
ACACGGCTGAGGCACACGGCAGTATCTCTGCCCGTGTGTTTACTACCATGCATACTGACTTGAAA
TTTTTATGTG
Found at i:67262624 original size:13 final size:13
Alignment explanation
Indices: 67262606--67262630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67262596 TAAAAAATGT
67262606 AAAAATCATTAAG
1 AAAAATCATTAAG
67262619 AAAAATCATTAA
1 AAAAATCATTAA
67262631 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAAATCATTAAG
Found at i:67265136 original size:40 final size:40
Alignment explanation
Indices: 67264954--67265176 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
67264944 TCCTCGTTCA
* * * * *
67264954 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
67264993 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
67265033 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
67265073 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
67265113 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
67265153 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
67265177 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:67265185 original size:41 final size:41
Alignment explanation
Indices: 67265108--67265185 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67265098 TTAGTATCTC
* * *
67265108 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67265149 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67265186 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:67271196 original size:45 final size:45
Alignment explanation
Indices: 67271132--67271220 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
67271122 TTTGTCTAAG
*
67271132 GGAGGAATTTTTGTGGGGAAAGGGTATATGTATGAGAGCATGTTT
1 GGAGGAATTTTTGTAGGGAAAGGGTATATGTATGAGAGCATGTTT
67271177 GGAGGAATTTTTGTAGGGAAAGGGTATATGTATGAGAGCATGTT
1 GGAGGAATTTTTGTAGGGAAAGGGTATATGTATGAGAGCATGTT
67271221 CAAACTGAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.28, C:0.02, G:0.37, T:0.33
Consensus pattern (45 bp):
GGAGGAATTTTTGTAGGGAAAGGGTATATGTATGAGAGCATGTTT
Found at i:67273319 original size:72 final size:72
Alignment explanation
Indices: 67273235--67273377 Score: 241
Period size: 72 Copynumber: 2.0 Consensus size: 72
67273225 AGCTTAATCA
* *
67273235 CGAAAAAGGACTAAATTACATAAAGATCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGC
1 CGAAAAAAGACTAAATCACATAAAGATCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGC
67273300 CATGAAG
66 CATGAAG
* * *
67273307 CGAAAAAAGACTAAATCGCATAAAGTTCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGT
1 CGAAAAAAGACTAAATCACATAAAGATCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGC
67273372 CATGAA
66 CATGAA
67273378 ACTTAAATTG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (72 bp):
CGAAAAAAGACTAAATCACATAAAGATCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGC
CATGAAG
Found at i:67274512 original size:46 final size:46
Alignment explanation
Indices: 67274358--67274528 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
67274348 TTTGTGCCCT
** * **
67274358 AGTGTAAGACATGTCCAGGACATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGAGAGCC
** * ** ** *
67274404 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAAGATGAGAGCC
67274452 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATG-AGAGCC
*
67274498 AGTGTAAGACATGTCTGAGACATGCATCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
67274529 TACGAGATGT
Statistics
Matches: 100, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 52 0.52
47 27 0.27
48 21 0.21
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGAGAGCC
Found at i:67275866 original size:20 final size:21
Alignment explanation
Indices: 67275829--67275867 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67275819 TTATAATGAC
*
67275829 CACACGGGTGTGTTGTCCTTT
1 CACACGGGAGTGTTGTCCTTT
67275850 CACACGGGAGT-TTGTCCT
1 CACACGGGAGTGTTGTCCT
67275868 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.13, C:0.26, G:0.28, T:0.33
Consensus pattern (21 bp):
CACACGGGAGTGTTGTCCTTT
Found at i:67277702 original size:39 final size:40
Alignment explanation
Indices: 67277657--67277841 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
67277647 GCTCCTCGTT
* * *
67277657 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
67277697 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
67277736 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
67277776 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
67277817 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
67277842 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:67277757 original size:40 final size:39
Alignment explanation
Indices: 67277624--67277841 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
67277614 AAATCACGTA
* * **
67277624 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
67277663 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
67277702 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
67277742 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
67277782 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
67277822 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
67277842 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:67293884 original size:49 final size:48
Alignment explanation
Indices: 67293584--67293946 Score: 167
Period size: 47 Copynumber: 7.7 Consensus size: 48
67293574 TTTGTGTGCT
* * * * *
67293584 AGTGTAAGA-CATGTATGGGACAT-GCATCGGCCAC-ATTATGA-GAGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCGGCCTCGA-CA-GATGAGCC
* * * * * *
67293630 AGTGTAAGACCATGTCTGGGACATGGCATTGACATTAAGAC-GA-GAGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCGGC-CT-CGACAGATGAGCC
* *
67293678 AGTGTAAGA-CATGTCT-AGGACAT-GCATCGGCCTCGAGACG-TAAGCC
1 AGTGTAAGACCATGTCTGA-GACATGGCATCGGCCTCGACA-GATGAGCC
* * * *
67293724 AGTGCAAGA-CATGTCAGAGACAT-GCATCGG-CT--ACGAGATGTGTC
1 AGTGTAAGACCATGTCTGAGACATGGCATCGGCCTCGAC-AGATGAGCC
* ** * * *
67293768 AGTCTAAGACCATGT-TCGAGACATGATATCGGCATGGTTA-AG-TGAGAGCT
1 AGTGTAAGACCATGTCT-GAGACATGGCATCGGCCTCG--ACAGAT--GAGCC
* *
67293818 AGTGTAAGACCACGTCTGAGACATGGCATCGGCCTCGATTTCA-AT-AGTC
1 AGTGTAAGACCATGTCTGAGACATGGCATCGGCCTCGA---CAGATGAGCC
* * *
67293867 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGACAGATGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCGGCCTCGACAGATGAGCC
*
67293914 AGTGTAAGACCATGCCT-AGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGA-GACATGGCATCGGC
67293947 ATTACACCCT
Statistics
Matches: 239, Mismatches: 46, Indels: 62
0.69 0.13 0.18
Matches are distributed among these distances:
43 2 0.01
44 13 0.05
45 17 0.07
46 52 0.22
47 57 0.24
48 30 0.13
49 32 0.13
50 31 0.13
51 3 0.01
52 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGAGACATGGCATCGGCCTCGACAGATGAGCC
Found at i:67302527 original size:42 final size:42
Alignment explanation
Indices: 67302468--67302550 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
67302458 ATCCTAATTG
* * *
67302468 GGAAAATAATTTCCTTATTCTAATCAACTACTAAAACATAAT
1 GGAAAATAAATCCCTTATTCTAATAAACTACTAAAACATAAT
*
67302510 GGAAAATAAATCCCTTATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAAATCCCTTATTCTAATAAACTACTAAAACATAA
67302551 AATAAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.30
Consensus pattern (42 bp):
GGAAAATAAATCCCTTATTCTAATAAACTACTAAAACATAAT
Found at i:67302605 original size:19 final size:18
Alignment explanation
Indices: 67302583--67302620 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
67302573 AATAAAACTC
67302583 ATCTACCAAAATAAGATTT
1 ATCTACCAAAATAA-ATTT
*
67302602 ATCTACCTAAATAAATTT
1 ATCTACCAAAATAAATTT
67302620 A
1 A
67302621 AAATATATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (18 bp):
ATCTACCAAAATAAATTT
Found at i:67303179 original size:16 final size:16
Alignment explanation
Indices: 67303158--67303189 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67303148 AGTGTAATGC
67303158 CCTAAAAATCCCGAAA
1 CCTAAAAATCCCGAAA
67303174 CCTAAAAATCCCGAAA
1 CCTAAAAATCCCGAAA
67303190 TCCAGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCTAAAAATCCCGAAA
Found at i:67304296 original size:16 final size:16
Alignment explanation
Indices: 67304277--67304310 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67304267 AGCTGAAATA
* *
67304277 TCGAAATGCCGAAAAG
1 TCGAAATACCAAAAAG
67304293 TCGAAATACCAAAAAG
1 TCGAAATACCAAAAAG
67304309 TC
1 TC
67304311 AAAAGTTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.21, G:0.18, T:0.15
Consensus pattern (16 bp):
TCGAAATACCAAAAAG
Found at i:67304583 original size:29 final size:28
Alignment explanation
Indices: 67304525--67304638 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
67304515 GTGAGAATGA
* * ** *
67304525 ATATGAATGTGACTGGGCCTAACAGTCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
67304553 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
67304582 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
67304611 ATATGAATAT-ATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
67304638 A
1 A
67304639 GATACAGGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
27 16 0.22
28 12 0.16
29 45 0.62
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:67308962 original size:29 final size:29
Alignment explanation
Indices: 67308907--67309021 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
67308897 GTGAGAATGA
* * * *
67308907 ATATGAATGTGA-CTGGGCCTAACGGGCT
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
67308935 ATATAAATGTGATTTGGGTCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
67308964 AGATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
67308993 ATATGAATATGA-TTAGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
67309021 A
1 A
67309022 GATACAGGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 26 0.37
29 44 0.63
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:67309025 original size:57 final size:58
Alignment explanation
Indices: 67308920--67309030 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
67308910 TGAATGTGAC
* * * *
67308920 TGGGCCTAACGGGCTATATAAATGTGATTTGGGTCTAATGGGCCAGATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCTCTAATGGGCCAGATACAGGTGATT
* *
67308978 TGGGCCTAATGGGCCATATGAATATGATTAGGCT-TAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCTCTAATGGGCCAGATACAGGT
67309031 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTAGGCTCTAATGGGCCAGATACAGGTGATT
Found at i:67318148 original size:19 final size:20
Alignment explanation
Indices: 67318124--67318161 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67318114 GGTACCACCA
67318124 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
67318143 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
67318162 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:67318457 original size:46 final size:46
Alignment explanation
Indices: 67318390--67318511 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
67318380 CGCCCCTAAG
* * *
67318390 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
67318436 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
67318482 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
67318512 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:67318530 original size:46 final size:45
Alignment explanation
Indices: 67318388--67318530 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
67318378 CCCGCCCCTA
* ** *
67318388 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
* ** **
67318433 AAATGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
*
67318479 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC-ACCATCCT
67318526 AGTGA
1 AGTGA
67318531 CATGTCACTT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
46 78 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCCT
Found at i:67318968 original size:30 final size:30
Alignment explanation
Indices: 67318934--67318993 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
67318924 ATTTAATACG
67318934 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
67318964 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
67318994 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:67332061 original size:29 final size:28
Alignment explanation
Indices: 67332018--67332077 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
67332008 TACAAGCTGT
* * *
67332018 ATGCACTCAACAAAATCATCATAGCAGC
1 ATGCACTCAACAAAAACATAACAGCAGC
*
67332046 ATGCACTTTAACAAAAACATAACAGCAGC
1 ATGCAC-TCAACAAAAACATAACAGCAGC
67332075 ATG
1 ATG
67332078 GTTGGCCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.45, C:0.25, G:0.12, T:0.18
Consensus pattern (28 bp):
ATGCACTCAACAAAAACATAACAGCAGC
Found at i:67333246 original size:78 final size:78
Alignment explanation
Indices: 67333112--67333269 Score: 235
Period size: 78 Copynumber: 2.0 Consensus size: 78
67333102 TTCAAAATGT
* * *
67333112 CATCTTTAGTTGGGAAGCCAGACCATGTGATTCCACAAGCCATATCTTTTAAAGATTTGTCCATT
1 CATCATTAGTTGGGAAGCAAGACCATGTGATTCCACAAACCATATCTTTTAAAGATTTGTCCATT
*
67333177 GAAACTTCTTTTC
66 AAAACTTCTTTTC
* * * * *
67333190 CATCATTAGTTGGGAAGCAAGACTATGTGATTCCTCAAATCATTTCTTTTAAAGATTTTTCCATT
1 CATCATTAGTTGGGAAGCAAGACCATGTGATTCCACAAACCATATCTTTTAAAGATTTGTCCATT
67333255 AAAACTTCTTTTC
66 AAAACTTCTTTTC
67333268 CA
1 CA
67333270 CCACACATTC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.38
Consensus pattern (78 bp):
CATCATTAGTTGGGAAGCAAGACCATGTGATTCCACAAACCATATCTTTTAAAGATTTGTCCATT
AAAACTTCTTTTC
Found at i:67349384 original size:30 final size:30
Alignment explanation
Indices: 67349348--67349408 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67349338 CATTTAATAC
* *
67349348 AAACTTTGGAAAAATTACATTTTTTCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
67349378 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
67349408 A
1 A
67349409 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:67349967 original size:40 final size:40
Alignment explanation
Indices: 67349923--67350002 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
67349913 AATTCAATCC
67349923 ATGTCCAATTTTTGTCCATAGACTGAGAAATTGGTCAAAT
1 ATGTCCAATTTTTGTCCATAGACTGAGAAATTGGTCAAAT
* *
67349963 ATGTCCAATTTTTGTCCATAGACTTAGAAATTTGTCAAAT
1 ATGTCCAATTTTTGTCCATAGACTGAGAAATTGGTCAAAT
67350003 TGCTATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (40 bp):
ATGTCCAATTTTTGTCCATAGACTGAGAAATTGGTCAAAT
Found at i:67356453 original size:46 final size:46
Alignment explanation
Indices: 67356279--67356445 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
67356269 ATGTAACCCG
* * *
67356279 TCCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
* * * *
67356325 TCCAAAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCA
* *
67356375 T-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
*
67356418 TCCATAAGTGAACTCGGACTCAACTCAA
1 TCCATAAGCGAACTCGGACTCAACTCAA
67356446 TGAGTTCGAA
Statistics
Matches: 97, Mismatches: 15, Indels: 18
0.75 0.12 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 52 0.54
47 27 0.28
48 1 0.01
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
Found at i:67362722 original size:23 final size:23
Alignment explanation
Indices: 67362690--67362733 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
67362680 ACTACTATTT
67362690 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
67362713 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
67362734 AAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:67366853 original size:27 final size:27
Alignment explanation
Indices: 67366823--67366982 Score: 212
Period size: 27 Copynumber: 5.9 Consensus size: 27
67366813 GGGGCAAAAT
* * *
67366823 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67366850 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
67366877 AATAATTCTACCCGACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67366904 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
67366931 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
67366958 GGTAATTCTACCCTACAAGGGTATT
1 GGTAATTCTACCCTACAAGGGTATT
67366983 CAATAATTTT
Statistics
Matches: 116, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:67366980 original size:54 final size:54
Alignment explanation
Indices: 67366824--67366990 Score: 237
Period size: 54 Copynumber: 3.1 Consensus size: 54
67366814 GGGCAAAATG
* *
67366824 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * *
67366878 ATAATTCTACCCGACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * *
67366932 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTA-TTCA
1 GTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
67366985 ATAATT
1 GTAATT
67366991 TTGTAAGTCG
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 8 0.08
54 92 0.92
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (54 bp):
GTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:67367040 original size:27 final size:27
Alignment explanation
Indices: 67366986--67367315 Score: 172
Period size: 27 Copynumber: 12.3 Consensus size: 27
67366976 GGGTATTCAA
* ***
67366986 TAATTTTGTAAGTCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTATTTTGG
* *
67367013 TAATTTTGTAAATCGGGGGTACTTTGG
1 TAATTTTGTAAATCGAGGGTATTTTGG
* *
67367040 TAATTTT-TACAAGTTGAGGGTATTTTAG
1 TAATTTTGTA-AA-TCGAGGGTATTTTGG
* * *
67367068 TAATTTTGCAAA-CTGAGGGTATTTCGA
1 TAATTTTGTAAATC-GAGGGTATTTTGG
***
67367095 TAATTTCACAAATC-AGGGTATTTTGG
1 TAATTTTGTAAATCGAGGGTATTTTGG
** *
67367121 TAATTTTACAAA-CCAGGGGTATTTTGG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
* * *
67367148 TAA-TTTGTAAACCAAAGGTATTTTGG
1 TAATTTTGTAAATCGAGGGTATTTTGG
** * * *
67367174 TAATTTTACAAGTCAAGGGTATTTTAG
1 TAATTTTGTAAATCGAGGGTATTTTGG
** * *
67367201 TAATTTCATAGAT-TAGGGGTATTTTGG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
** * **
67367228 TAATTTTACAAGTCGAGGGTATTTCAG
1 TAATTTTGTAAATCGAGGGTATTTTGG
***
67367255 TAATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
*** *
67367282 TAATTTCACAAA-CTAGGGGTATTTTGG
1 TAATTTTGTAAATCGA-GGGTATTTTGG
67367309 TAATTTT
1 TAATTTT
67367316 ACAAACCAGG
Statistics
Matches: 243, Mismatches: 47, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.00
26 46 0.19
27 173 0.71
28 22 0.09
29 1 0.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTATTTTGG
Found at i:67367237 original size:54 final size:54
Alignment explanation
Indices: 67367057--67367374 Score: 322
Period size: 54 Copynumber: 5.9 Consensus size: 54
67367047 TACAAGTTGA
* * * * *
67367057 GGGTATTTTAGTAATTTTGCAAA-CTGAGGGTA-TTTCGATAATTTCACAAATCA-
1 GGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAG-TAATTTCACAAACCAG
* ** *
67367110 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT-GTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTCACAAACCAG
* ** * * * **
67367163 AGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTTAGTAATTTCATAGATTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTCACAAACCAG
** * *
67367217 GGGTATTTTGGTAATTTTACAAGTC-GAGGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTCACAAACCAG
* * * *
67367271 GGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTCACAAACCAG
** *
67367325 GGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTCACAAA
67367375 TTGAGGCCAT
Statistics
Matches: 223, Mismatches: 36, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
52 5 0.02
53 71 0.32
54 146 0.65
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTCACAAACCAG
Found at i:67367319 original size:27 final size:27
Alignment explanation
Indices: 67367028--67367374 Score: 289
Period size: 27 Copynumber: 12.9 Consensus size: 27
67367018 TTGTAAATCG
* * *
67367028 GGGGTACTTTGGTAATTTTTAC-AAGTT
1 GGGGTATTTTGGTAA-TTTTACAAACTA
* *
67367055 GAGGGTATTTTAGTAATTTTGCAAACT-
1 G-GGGTATTTTGGTAATTTTACAAACTA
* * *
67367082 GAGGGTATTTCGATAATTTCACAAA-TCA
1 G-GGGTATTTTGGTAATTTTACAAACT-A
*
67367110 -GGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTA
*
67367136 GGGGTATTTTGGTAATTTGT--AAACCA
1 GGGGTATTTTGGTAATTT-TACAAACTA
** *
67367162 AAGGTATTTTGGTAATTTTAC-AAGTCA
1 GGGGTATTTTGGTAATTTTACAAACT-A
* * * * * *
67367189 AGGGTATTTTAGTAATTTCATAGATTA
1 GGGGTATTTTGGTAATTTTACAAACTA
* *
67367216 GGGGTATTTTGGTAATTTTAC-AAGTC
1 GGGGTATTTTGGTAATTTTACAAACTA
** *
67367242 GAGGGTATTTCAGTAATTTCACAAA-TCA
1 G-GGGTATTTTGGTAATTTTACAAACT-A
*
67367270 GGGGTATTTTGGTAATTTCACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTA
*
67367297 GGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTA
** *
67367324 GGGGTATTTTAATAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTA
*
67367351 GGGGTATTTTAGTAATTTTACAAA
1 GGGGTATTTTGGTAATTTTACAAA
67367375 TTGAGGCCAT
Statistics
Matches: 264, Mismatches: 41, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.00
26 49 0.19
27 192 0.73
28 22 0.08
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAACTA
Found at i:67367387 original size:81 final size:82
Alignment explanation
Indices: 67367022--67367376 Score: 366
Period size: 81 Copynumber: 4.4 Consensus size: 82
67367012 GTAATTTTGT
* * * * * *
67367022 AAATCGGGGGTACTTTGGTAATTTTTACAAGTT-GAGGGTATTTTAGTAATTTTGCAAA-CTGAG
1 AAATCAGGGGTATTTTGGTAA-TTTTACAAATTAG-GGGTATTTTGGTAATTTTACAAACCAGAG
*
67367085 GGTATTTCGATAATTTCAC
64 GGTATTTCAATAATTTCAC
** *
67367104 AAATCA-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGT--AAACCA-AAG
1 AAATCAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTT-TACAAACCAGAGG
*** *
67367165 GTATTTTGGTAATTTTAC
65 GTATTTCAATAATTTCAC
* * * * * * **
67367183 AAGTCAAGGGTATTTTAGTAATTTCATAGATTAGGGGTATTTTGGTAATTTTACAAGTC-GAGGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAACCAGAGGG
*
67367247 TATTTCAGTAATTTCAC
66 TATTTCAATAATTTCAC
* *
67367264 AAATCAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG-GGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAACCAGAGGG
* *
67367328 TATTTTAATAATTTTAC
66 TATTTCAATAATTTCAC
* *
67367345 AAACCAGGGGTATTTTAGTAATTTTACAAATT
1 AAATCAGGGGTATTTTGGTAATTTTACAAATT
67367377 GAGGCCATTT
Statistics
Matches: 226, Mismatches: 39, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
79 26 0.12
80 63 0.28
81 131 0.58
82 6 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (82 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAACCAGAGGG
TATTTCAATAATTTCAC
Found at i:67367899 original size:17 final size:17
Alignment explanation
Indices: 67367877--67367910 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
67367867 CCAATTCGAA
67367877 TAGAAATGAAGTGTCGC
1 TAGAAATGAAGTGTCGC
67367894 TAGAAATGAAGTGTCGC
1 TAGAAATGAAGTGTCGC
67367911 ATTCTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (17 bp):
TAGAAATGAAGTGTCGC
Found at i:67373307 original size:47 final size:47
Alignment explanation
Indices: 67373205--67373505 Score: 516
Period size: 47 Copynumber: 6.4 Consensus size: 47
67373195 CAGCCAACAC
67373205 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67373252 AGTGTATATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67373300 AGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67373346 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67373393 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * *
67373440 AGTGTATATATGTGATAGGGCCTAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67373487 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
67373506 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 7, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
45 22 0.09
46 23 0.09
47 153 0.63
48 23 0.09
49 22 0.09
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:67373585 original size:103 final size:103
Alignment explanation
Indices: 67373456--67373660 Score: 401
Period size: 103 Copynumber: 2.0 Consensus size: 103
67373446 TATATGTGAT
*
67373456 AGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTT
1 AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTT
67373521 GTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTC
66 GTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTC
67373559 AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTT
1 AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTT
67373624 GTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCT
66 GTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCT
67373661 TTATGCAAGA
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 101 1.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (103 bp):
AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTT
GTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTC
Found at i:67373756 original size:37 final size:37
Alignment explanation
Indices: 67373700--67373778 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
67373690 CCGAGCTCTA
* * *
67373700 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
67373737 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67373774 AAGAC
1 AAGAC
67373779 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67375966 original size:40 final size:40
Alignment explanation
Indices: 67375907--67376227 Score: 482
Period size: 40 Copynumber: 8.1 Consensus size: 40
67375897 AGGTCTCGAC
67375907 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67375946 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
67375986 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
67376026 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67376066 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
67376106 GATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
67376146 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
67376186 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
67376226 GA
1 GA
67376228 CGTGTATTCG
Statistics
Matches: 255, Mismatches: 26, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
39 4 0.02
40 251 0.98
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:67383658 original size:30 final size:30
Alignment explanation
Indices: 67383610--67383800 Score: 165
Period size: 30 Copynumber: 6.4 Consensus size: 30
67383600 TGGTTGACAC
* * * *
67383610 ATCCCCTTTCGTAATTCGATAACCGAAGTT
1 ATCCCTTTTCATAGTTCGATAACCGAAGCT
* *
67383640 ATCCCTTTTTATAGTTCGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTCGATAACCGAAGCT
* *
67383670 ATCCCTTTTCATTA-TTTGATAGCCGAAGCT
1 ATCCCTTTTCA-TAGTTCGATAACCGAAGCT
* *
67383700 ATCCCTTTTCATAGATCGATATA-CGAAGCC
1 ATCCCTTTTCATAGTTCGATA-ACCGAAGCT
*** * *
67383730 ATCCCTTTTCATAGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAGTTCGATAACCG-AAGCT
* **
67383760 ATCCCTTTTCATAATT-GATAGTCGAAGCT
1 ATCCCTTTTCATAGTTCGATAACCGAAGCT
67383789 ATCCCTTTTCAT
1 ATCCCTTTTCAT
67383801 TCGTCGATAA
Statistics
Matches: 135, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 22 0.16
30 109 0.81
31 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATAACCGAAGCT
Found at i:67383696 original size:60 final size:61
Alignment explanation
Indices: 67383624--67383809 Score: 193
Period size: 60 Copynumber: 3.1 Consensus size: 61
67383614 CCTTTCGTAA
* * * *
67383624 TTCGATAACCGAAGTTATCCCTTTTTATAGTTCGATAGCCGAAGCTATCCCTTTTCATTA-
1 TTCGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGACGAAGCTATCCCTTTTCATTAG
* * * *
67383684 TTTGATAGCCGAAGCTATCCCTTTTCATAGATCGATATACGAAGCCATCCCTTTTCA-TAG
1 TTCGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGACGAAGCTATCCCTTTTCATTAG
* * * * * * *
67383744 TTCGATGGTCGTCA-CCATCCCTTTTCATAATT-GATAGTCGAAGCTATCCCTTTTCATTCG
1 TTCGATAGCCG-AAGCTATCCCTTTTCATAGTTCGATAGACGAAGCTATCCCTTTTCATTAG
67383804 -TCGATA
1 TTCGATA
67383810 ATCGCTGTTA
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
59 28 0.27
60 74 0.72
61 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (61 bp):
TTCGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGACGAAGCTATCCCTTTTCATTAG
Found at i:67390540 original size:30 final size:30
Alignment explanation
Indices: 67390499--67390725 Score: 176
Period size: 30 Copynumber: 7.6 Consensus size: 30
67390489 ACCATATTGT
*
67390499 ACCATCACTTTTCATAATTTGATAGTCGTC
1 ACCATCCCTTTTCATAATTTGATAGTCGTC
* * *
67390529 ACCATCCCTTTTCATAATTTAATGGTCGAC
1 ACCATCCCTTTTCATAATTTGATAGTCGTC
* ** ** * *
67390559 ATCATCCCTTTTCATTGTTCAATGGTCATC
1 ACCATCCCTTTTCATAATTTGATAGTCGTC
* * *
67390589 ACCATCCATTTTCATAATTTGATAGCCG-A
1 ACCATCCCTTTTCATAATTTGATAGTCGTC
* * * *
67390618 AGCTATCCCTTTTAATAGA-TCGATAGTCG-A
1 A-CCATCCCTTTTCATA-ATTTGATAGTCGTC
* * *
67390648 AGCCATCCCTTTTCATAGTTTGATGGTCATC
1 A-CCATCCCTTTTCATAATTTGATAGTCGTC
*
67390679 ACCATTCCTTTTCAT--TGTTGATAGTCGTC
1 ACCATCCCTTTTCATAAT-TTGATAGTCGTC
*
67390708 ACCATCCCTTTTCGTAAT
1 ACCATCCCTTTTCATAAT
67390726 CGATAGCTGG
Statistics
Matches: 153, Mismatches: 37, Indels: 13
0.75 0.18 0.06
Matches are distributed among these distances:
28 1 0.01
29 24 0.16
30 125 0.82
31 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (30 bp):
ACCATCCCTTTTCATAATTTGATAGTCGTC
Found at i:67390592 original size:60 final size:60
Alignment explanation
Indices: 67390499--67390725 Score: 203
Period size: 60 Copynumber: 3.8 Consensus size: 60
67390489 ACCATATTGT
* ** * * *
67390499 ACCATCACTTTTCATAATTTGATAGTCGTCACCATCCCTTTTCATAATTTAATGGTCGAC
1 ACCATCCCTTTTCATTGTTCGATAGTCATCACCATCCCTTTTCATAATTTGATGGTCGAC
* * * * * *
67390559 ATCATCCCTTTTCATTGTTCAATGGTCATCACCATCCATTTTCATAATTTGATAGCCGA-
1 ACCATCCCTTTTCATTGTTCGATAGTCATCACCATCCCTTTTCATAATTTGATGGTCGAC
* * * * *
67390618 AGCTATCCCTTTTAATAGATCGATAGTCGA--AGCCATCCCTTTTCATAGTTTGATGGTC-ATC
1 A-CCATCCCTTTTCATTGTTCGATAGTC-ATCA-CCATCCCTTTTCATAATTTGATGGTCGA-C
* * *
67390679 ACCATTCCTTTTCATTGTT-GATAGTCGTCACCATCCCTTTTCGTAAT
1 ACCATCCCTTTTCATTGTTCGATAGTCATCACCATCCCTTTTCATAAT
67390726 CGATAGCTGG
Statistics
Matches: 129, Mismatches: 31, Indels: 15
0.74 0.18 0.09
Matches are distributed among these distances:
59 25 0.19
60 102 0.79
61 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (60 bp):
ACCATCCCTTTTCATTGTTCGATAGTCATCACCATCCCTTTTCATAATTTGATGGTCGAC
Found at i:67390743 original size:29 final size:29
Alignment explanation
Indices: 67390711--67390778 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
67390701 AGTCGTCACC
*
67390711 ATCCCTTTTCGTA-ATCGATAGCTGGAA-CT
1 ATCCCTTTTCGTATA-CGATAGC-CGAAGCT
*
67390740 ATCCCTTTCCGTATACGATAGCCGAAGCT
1 ATCCCTTTTCGTATACGATAGCCGAAGCT
*
67390769 ATTCCTTTTC
1 ATCCCTTTTC
67390779 ATACGTCGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 3 0.09
29 29 0.88
30 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (29 bp):
ATCCCTTTTCGTATACGATAGCCGAAGCT
Found at i:67405437 original size:24 final size:23
Alignment explanation
Indices: 67405408--67405456 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
67405398 ATACATTATT
67405408 AAAATATA-GAAAATAGCAAATTGA
1 AAAATA-ACGAAAA-AGCAAATTGA
*
67405432 AAAATAACGAAAAATCAAATTGA
1 AAAATAACGAAAAAGCAAATTGA
67405455 AA
1 AA
67405457 TATCCACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.65, C:0.06, G:0.10, T:0.18
Consensus pattern (23 bp):
AAAATAACGAAAAAGCAAATTGA
Found at i:67406684 original size:50 final size:49
Alignment explanation
Indices: 67406621--67406996 Score: 248
Period size: 50 Copynumber: 7.5 Consensus size: 49
67406611 TTTGAAAAGT
* *
67406621 AAGATTTGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTTG-CGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * ** **** * *
67406671 AAGATTTGTCATTGTGGCTTTAATCTGTTCCACTGCACCACCTGGGAAGT
1 AAGATTTG-CGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
** *
67406721 AAGATTCACTGTTGTAGCTTTGATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTTGC-GTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * ** ** * * *
67406771 AAGATTTTCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGT
1 AAGA-TTTGCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * * *
67406821 AAGATTCGCTGTTGTAGTTTTAATCTTTTTAACTGCAATATCGAGAAAGC
1 AAGATTTGC-GTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
** ** * * ** * * * * *
67406871 AAGATTCACCACTGTGGCTTTAATCTATTCCACTGTACTGCCTGGGAAGT
1 AAGATT-TGCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
*
67406921 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTTGC-GTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
** *
67406971 AAGATTCACCGTTGTGGCTTTAATCT
1 AAGATT-TGCGTTGTAGCTTTAATCT
67406997 GTTCCACTAC
Statistics
Matches: 234, Mismatches: 86, Indels: 12
0.70 0.26 0.04
Matches are distributed among these distances:
49 5 0.02
50 224 0.96
51 5 0.02
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (49 bp):
AAGATTTGCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
Found at i:67406790 original size:100 final size:100
Alignment explanation
Indices: 67406617--67407030 Score: 594
Period size: 100 Copynumber: 4.1 Consensus size: 100
67406607 AACTTTTGAA
* ** * ***
67406617 AAGTAAGATTTGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTTGTCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
*
67406682 TTGTGGCTTTAATCTGTTCCACTGCACCACCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
* * ** *
67406717 AAGTAAGATTCACTGTTGTAGCTTTGATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTTTCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
67406782 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
* * * *
67406817 AAGTAAGATTCGCTGTTGTAGTTTTAATCTTTTTAACTGCAATATCGAGAAAGCAAGATTCACCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
* * * *
67406882 CTGTGGCTTTAATCTATTCCACTGTACTGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
*
67406917 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
* * * *
67406982 TTGTGGCTTTAATCTGTTCCACTACACTGCCAGGA
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
67407017 AAGTAAGATTCGCT
1 AAGTAAGATTCGCT
67407031 ATTCTCAGTC
Statistics
Matches: 280, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 280 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (100 bp):
AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
Found at i:67407025 original size:50 final size:50
Alignment explanation
Indices: 67406682--67407027 Score: 280
Period size: 50 Copynumber: 6.9 Consensus size: 50
67406672 AGATTTGTCA
** *
67406682 TTGTGGCTTTAATCTGTTCCACTGCACCACCTGGGAAGTAAGATTCACTG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * * ** * * * * **
67406732 TTGTAGCTTTGATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTTTCCG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * *
67406782 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * * ** * ** * * *
67406832 TTGTAGTTTTAATCTTTTTAACTGCAATATC-GAGAAAGCAAGATTCACCA
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTG-GGAAGTAAGATTCACCG
* * * * *
67406882 CTGTGGCTTTAATCTATTCCACTGTACTGCCTGGGAAGTAAGATTCGCTG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * ** * * * *
67406932 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * *
67406982 TTGTGGCTTTAATCTGTTCCACTACACTGCCAGGAAAGTAAGATTC
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTC
67407028 GCTATTCTCA
Statistics
Matches: 216, Mismatches: 78, Indels: 4
0.72 0.26 0.01
Matches are distributed among these distances:
49 1 0.00
50 214 0.99
51 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (50 bp):
TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
Found at i:67407322 original size:132 final size:133
Alignment explanation
Indices: 67407186--67407851 Score: 955
Period size: 132 Copynumber: 5.0 Consensus size: 133
67407176 ACTATAACTT
* * * * * * * * *
67407186 CAGGGAGATAGGATTACTGGCTTTAATGTACCCCGCTGTATCCTTAGGGAGGTAAAGTCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* * * *
67407251 CTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACT-
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCACTGCTG
67407315 ACC
131 ACC
* *
67407318 CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGAAGGTAAAATTTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* * * * * * *
67407383 CTTCGATCTGCTCCACTACTGCTTAGAGAGATGAGATCTGTAATTTTAAATATATTCCACTGGT-
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCACTGCTG
67407447 ACC
131 ACC
* ** *
67407450 CAGGGAGATAGAATTACTGGCTTCAATCTACTCTACTGTAACCTCAAAGAGGTAAAATCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* *
67407515 CTTCGATCTACTCTACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCACTGCTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCACTGCTG
67407580 A-C
131 ACC
67407582 CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* * * * *
67407647 CTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATATTTAATCTTCAATTTATTTCACTGTTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCACTGCTG
67407712 A-C
131 ACC
**
67407714 CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAAATCTATCAT
1 CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* * *
67407779 CTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTTCAACCTATTCCACTGCTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCACTGCTG
67407844 A-C
131 ACC
67407846 CAGGGA
1 CAGGGA
67407852 TCATCTTCTA
Statistics
Matches: 477, Mismatches: 56, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
132 476 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (133 bp):
CAGGGAGATAGAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCACTGCTG
ACC
Found at i:67407752 original size:43 final size:44
Alignment explanation
Indices: 67407559--67407764 Score: 147
Period size: 44 Copynumber: 4.7 Consensus size: 44
67407549 GATCTTTAAT
67407559 CTTCAATCTATTCCACTGCTGAC-CAGGGAGATAGAATTACTGG
1 CTTCAATCTATTCCACTGCTGACTCAGGGAGATAGAATTACTGG
* * * * * ***
67407602 CTTCAATCTACTCCACTG-TAACCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTATTCCACTGCTGA-CTCAGGGAGATAGAAT-TACTGG
* * * * *
67407647 CTTCGATCTGTTCCACTACTG-CTTAGGGAGATAAGATATTTAAT--
1 CTTCAATCTATTCCACTGCTGACTCAGGGAGAT-AGA-A-TTACTGG
* * *
67407691 CTTCAATTTATTTCACTGTTGAC-CAGGGAGATAGAATTACTGG
1 CTTCAATCTATTCCACTGCTGACTCAGGGAGATAGAATTACTGG
* *
67407734 CTTCAATCTACTCCACTG-TAACCTCAGGGAG
1 CTTCAATCTATTCCACTGCTGA-CTCAGGGAG
67407765 GTAAAATCTA
Statistics
Matches: 120, Mismatches: 31, Indels: 23
0.69 0.18 0.13
Matches are distributed among these distances:
41 4 0.03
42 5 0.04
43 37 0.31
44 51 0.43
45 19 0.16
46 3 0.03
47 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
CTTCAATCTATTCCACTGCTGACTCAGGGAGATAGAATTACTGG
Found at i:67407851 original size:44 final size:44
Alignment explanation
Indices: 67407803--67407930 Score: 118
Period size: 44 Copynumber: 3.2 Consensus size: 44
67407793 ACTACTGCTT
67407803 AGGGAGACAAGATCTTTAATCTTCAACCTATTCCACTGCTGACC
1 AGGGAGACAAGATCTTTAATCTTCAACCTATTCCACTGCTGACC
* * * * *
67407847 AGGGA-TC---ATCTTCT-ATCTGC-TCC-A--CTACTGCT---T
1 AGGGAGACAAGATCTT-TAATCTTCAACCTATTCCACTGCTGACC
67407880 AGGGAGACAAGATCTTTAATCTTCAACCTATTCCACTGCTGACC
1 AGGGAGACAAGATCTTTAATCTTCAACCTATTCCACTGCTGACC
67407924 AGGGAGA
1 AGGGAGA
67407931 TGGGACTTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 26
0.63 0.10 0.27
Matches are distributed among these distances:
33 5 0.08
34 1 0.02
36 8 0.13
37 10 0.16
38 3 0.05
39 3 0.05
40 10 0.16
41 8 0.13
43 1 0.02
44 12 0.20
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (44 bp):
AGGGAGACAAGATCTTTAATCTTCAACCTATTCCACTGCTGACC
Found at i:67407901 original size:77 final size:77
Alignment explanation
Indices: 67407774--67407928 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
67407764 GGTAAAATCT
67407774 ATCATCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTTCAACCTATTCCAC
1 ATCATCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTTCAACCTATTCCAC
67407839 TGCTGACCAGGG
66 TGCTGACCAGGG
67407851 ATCATCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTTCAACCTATTCCAC
1 ATCATCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTTCAACCTATTCCAC
67407916 TGCTGACCAGGG
66 TGCTGACCAGGG
67407928 A
1 A
67407929 GATGGGACTT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.31
Consensus pattern (77 bp):
ATCATCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTTCAACCTATTCCAC
TGCTGACCAGGG
Found at i:67408089 original size:131 final size:131
Alignment explanation
Indices: 67407855--67408849 Score: 1564
Period size: 131 Copynumber: 7.6 Consensus size: 131
67407845 CCAGGGATCA
* * * * *
67407855 TCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTT-CAACCTATTCCACTGC
1 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAAT-TTCCAACCTATTCCACTAC
* *
67407919 TGACCAGGGAGATGGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGTAAGATAAGATTCGC
65 TGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGC
67407984 CG
130 CG
67407986 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
* *
67408051 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACACCTGGGTAAGATAAGATTCGCC
66 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCC
67408116 G
131 G
67408117 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
*
67408182 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGTAAGATAAGATTCGCC
66 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCC
67408247 G
131 G
67408248 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
* * * * *
67408313 GGCCAGGGAGATACGACTTATGGCTTAAATCTGCTTCCTTACTCCAGGGGAAGATAAGATTCGCC
66 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCC
67408378 G
131 G
* * * * * *
67408379 CCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAAACCTATTCCACTGCT
1 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
* *
67408444 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAAGATAAGATTCGTC
66 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCC
67408509 G
131 G
* *
67408510 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACTGCT
1 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
* * *
67408575 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTGCTCCTGAGGAAGATAAGATTCGTC
66 GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCC
67408640 G
131 G
*
67408641 TCTTCGATCAGCTCCACTACTGCTTA-AGGAGATAAGATCTGTAATTTCCAACCTATTCCACTAC
1 TCTTCGATCTGCTCCACTACTGCTTAGA-GAGATAAGATCTGTAATTTCCAACCTATTCCACTAC
* * * * *
67408705 TGGCCAGGGAGATACGACTTATGGCTTAAATCTGCTTCCTTACTCCAGGGGAAGATAAGATTCGC
65 TGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGC
67408770 CG
130 CG
* * * * * * * *
67408772 CCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCT
1 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
67408837 G-CTCAGGGAGATA
66 GAC-CAGGGAGATA
67408850 AGGTCTACAA
Statistics
Matches: 806, Mismatches: 54, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
130 3 0.00
131 803 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
GACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCC
G
Found at i:67408150 original size:44 final size:44
Alignment explanation
Indices: 67408102--67408285 Score: 112
Period size: 44 Copynumber: 4.2 Consensus size: 44
67408092 CACCTGGGTA
*
67408102 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGAG
*** * ** * *
67408146 AGATAAGA-TCTGTAAT-TTCCAACCTATTCCACTACTGAC-CAGGG
1 AGATAAGATTC-GCCGTCTT-CAATCTGCTCCACTACTG-CTTAGAG
* * * * * **
67408190 AGATAGGACTT-G-TGGCTTAAATCTGCTTCC-CTACTCCTGGGTA-
1 AGATAAGA-TTCGCCGTCTTCAATCTGC-TCCACTACTGCTTAG-AG
*
67408233 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGAG
67408277 AGATAAGAT
1 AGATAAGAT
67408286 CTGTAATTTC
Statistics
Matches: 98, Mismatches: 29, Indels: 26
0.64 0.19 0.17
Matches are distributed among these distances:
42 3 0.03
43 26 0.27
44 67 0.68
45 1 0.01
46 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGAG
Found at i:67408439 original size:44 final size:44
Alignment explanation
Indices: 67408391--67408571 Score: 115
Period size: 44 Copynumber: 4.1 Consensus size: 44
67408381 TTTGATCTAC
67408391 TCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAAACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAAACCTAT
* * * *** * *
67408435 TCCACTGCTGAC-CAGGGAGATAGGA-CTTGTGGCTT-AAATCTGCT
1 TCCACTACTG-CTTAGGGAGATAAGATC-TGTAATTTCAAACCT-AT
* ** * * **
67408479 TCC-CTACT-CTTGGGGAAGATAAGAT-TCGTCGTCTTC-GATCTGC
1 TCCACTACTGCTTAGGG-AGATAAGATCT-GTAAT-TTCAAACCTAT
*
67408522 TCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAAACCTAT
67408566 TCCACT
1 TCCACT
67408572 GCTGACCAGG
Statistics
Matches: 100, Mismatches: 24, Indels: 26
0.67 0.16 0.17
Matches are distributed among these distances:
41 1 0.01
42 4 0.04
43 26 0.26
44 61 0.61
45 8 0.08
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAAACCTAT
Found at i:67408828 original size:44 final size:43
Alignment explanation
Indices: 67408780--67409068 Score: 153
Period size: 44 Copynumber: 6.6 Consensus size: 43
67408770 CGCCTTTGAT
*
67408780 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-CAATCTTCAAC
* * *
67408824 CTACTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-CAATCTTCAAC
* * * * * * *
67408868 CTATTCCACTGCTG-TCCAGGGAGATAGGAT-T-AGTGGCTTAAAT
1 CTACTCCACTACTGCT-TAGGGAGATAAGATCTCAAT--CTTCAAC
* * * * *
67408911 CTGCTTCC-CTAC--CTCTGGGGAAGATAAGAT-TCACTGTCTTCGAT
1 CTAC-TCCACTACTGCT-TAGGG-AGATAAGATCTCA--ATCTTCAAC
* * *
67408955 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-CAATCTTCAAC
* ** * * * *
67408999 CGACTCCACTGTTGCTCAAGGAGATAAGGTCTACAATCTTGAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-CAATCTTCAAC
* *
67409043 ATATTCCACTACTG-TCTAGGGAGATA
1 CTACTCCACTACTGCT-TAGGGAGATA
67409069 GGACTAGTGG
Statistics
Matches: 187, Mismatches: 43, Indels: 30
0.72 0.17 0.12
Matches are distributed among these distances:
41 2 0.01
42 5 0.03
43 25 0.13
44 145 0.78
45 5 0.03
46 5 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (43 bp):
CTACTCCACTACTGCTTAGGGAGATAAGATCTCAATCTTCAAC
Found at i:67408849 original size:175 final size:176
Alignment explanation
Indices: 67408652--67409185 Score: 763
Period size: 175 Copynumber: 3.1 Consensus size: 176
67408642 CTTCGATCAG
* * * ** *
67408652 CTCCACTACTGCTTAAGGAGATAAGATCTGTAAT-TTCCAACCTATTCCACTACTGGCCAGGGAG
1 CTCCACTGCTGCTCAAGGAGATAAGGTCTACAATCTT-CAACCTATTCCACTACTGTCCAGGGAG
* * * * * *
67408716 ATACGACTTA-TGGCTTAAATCTGCTTCCTTACTCCAGGGGAAGATAAGATTCGCCGCCTTTGAT
65 ATAGGACTTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCTGTCTTCGAT
*
67408780 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTA
130 CTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
* *
67408827 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTATTCCACTGCTGTCCAGGGAGA
1 CTCCACTGCTGCTCAAGGAGATAAGGTCTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGA
*
67408892 TAGGA-TTAGTGGCTTAAATCTGCTTCCCTAC-CTCTGGGGAAGATAAGATTCACTGTCTTCGAT
66 TAGGACTTAGTGGCTTAAATCTGCTTCCCTACTC-CTGGGGAAGATAAGATTCGCTGTCTTCGAT
* *
67408955 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCGA
130 CTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
* * * *
67409002 CTCCACTGTTGCTCAAGGAGATAAGGTCTACAATCTTGAACATATTCCACTACTGTCTAGGGAGA
1 CTCCACTGCTGCTCAAGGAGATAAGGTCTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGA
* *
67409067 TAGGAC-TAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATATGATTCGTTGTCTTCGATC
66 TAGGACTTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCTGTCTTCGATC
* * *
67409131 TACTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTTAACCTG
131 TACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
*
67409177 CTCCGCTGC
1 CTCCACTGC
67409186 AACCCAGGGA
Statistics
Matches: 320, Mismatches: 34, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
174 4 0.01
175 313 0.98
176 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (176 bp):
CTCCACTGCTGCTCAAGGAGATAAGGTCTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGA
TAGGACTTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCTGTCTTCGATC
TACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
Found at i:67409223 original size:306 final size:303
Alignment explanation
Indices: 67408431--67409196 Score: 782
Period size: 306 Copynumber: 2.5 Consensus size: 303
67408421 AATTTCAAAC
* * *
67408431 CTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAA
1 CTATTCCACTACTGTCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAA
* * *
67408496 GATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAA
66 GATAAGATTCGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAA
* * *
67408561 CCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTGCTCCTGAGGA
131 CCTATTCCACTGC-AACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTCCTCCTGAGGA
*
67408626 AGATAAGATTCGTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTCCA
195 AGATAAGATTCCTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTCCA
* * * *
67408691 ACCTATTCCACTACTGGCCAGGGAGATACGACTTATGGCTTAAAT
260 ACCGACTCCACTACTGGCCAAGGAGATACGACTAAT-GCTTAAAT
* * * * * * * ** *
67408736 CTGCTTCC-TTAC--TCCAGGGGAAGATAAGATTCGCCGCCTTTGATCTAC-TCCACTACTGCTT
1 CT-ATTCCACTACTGTCCA-GGG-AGATAGGACTAG-TGGCTTAAATCTGCTTCC-CTACT-CTT
* ** * * * * * **
67408797 AGGG-AGATAAGATCTGCAAT-T-TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGTCTACA
60 GGGGAAGATAAGAT-T-CGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTA
* ** *
67408859 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACC
123 ATTTTCAACCTATTCCACTGC-AACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCT-CC
* * *
67408924 T-CTGGGGAAGATAAGATTCACT-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
186 TCCTGAGGAAGATAAGATTC-CTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCT
* * * * * *
67408987 GTAATTTTCAACCGACTCCACT-GTTGCTCAAGGAGATAAGGTCTACAAT-CTTGAA-
250 GTAATTTCCAACCGACTCCACTACTGGC-CAAGGAGAT-ACGACT--AATGCTTAAAT
* *
67409042 CATATTCCACTACTGTCTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGA
1 C-TATTCCACTACTGTCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGA
* * *
67409107 AGATATGATTCGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTTA
65 AGATAAGATTCGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCA
** *
67409172 ACCTGCTCCGCTGCAACCCAGGGAG
130 ACCTATTCCACTGCAA-CCAGGGAG
67409197 GCAAGGCTGG
Statistics
Matches: 363, Mismatches: 75, Indels: 45
0.75 0.16 0.09
Matches are distributed among these distances:
303 3 0.01
304 5 0.01
305 26 0.07
306 284 0.78
307 36 0.10
308 4 0.01
309 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (303 bp):
CTATTCCACTACTGTCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAA
GATAAGATTCGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAA
CCTATTCCACTGCAACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTCCTCCTGAGGAA
GATAAGATTCCTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTCCAA
CCGACTCCACTACTGGCCAAGGAGATACGACTAATGCTTAAAT
Found at i:67409331 original size:59 final size:59
Alignment explanation
Indices: 67409234--67409351 Score: 193
Period size: 59 Copynumber: 2.0 Consensus size: 59
67409224 GCTGTCAGTG
* * *
67409234 CAGGAATGCAAGATCTACTATCTTTATTGATCTGTTCTCTGGGGAACATGACCTGTATA
1 CAGGAATGCAAGATCTACTATCTTCACTGATCTATTCTCTGGGGAACATGACCTGTATA
67409293 CAGGAATGCAAGATCTACTAAT-TTCACTGATCTATTCTCTGGGGAACATGACCTGTATA
1 CAGGAATGCAAGATCTACT-ATCTTCACTGATCTATTCTCTGGGGAACATGACCTGTATA
67409352 ATGAACCTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
59 53 0.96
60 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (59 bp):
CAGGAATGCAAGATCTACTATCTTCACTGATCTATTCTCTGGGGAACATGACCTGTATA
Found at i:67411487 original size:29 final size:29
Alignment explanation
Indices: 67411446--67411557 Score: 99
Period size: 29 Copynumber: 3.9 Consensus size: 29
67411436 TTTTCTTTTC
* *
67411446 TTTTTCTTTTTTTCATTTTGATTTTGATT
1 TTTTTATTTTTTTCATTTTGATTTTCATT
*
67411475 TTTTTATTTTTTTCATTTT--TTCTTTA-T
1 TTTTTATTTTTTTCATTTTGATT-TTCATT
* *
67411502 TTTTTGTTTTTTTC-TTTCTTATTTTCATT
1 TTTTTATTTTTTTCATTT-TGATTTTCATT
67411531 TTTTTGATTTTTTT-ATTGATTGATTTT
1 TTTTT-ATTTTTTTCATT--TTGATTTT
67411558 TTTTATATTT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
26 3 0.04
27 17 0.25
28 6 0.09
29 26 0.38
30 9 0.13
31 6 0.09
32 1 0.01
ACGTcount: A:0.11, C:0.06, G:0.05, T:0.78
Consensus pattern (29 bp):
TTTTTATTTTTTTCATTTTGATTTTCATT
Found at i:67411500 original size:20 final size:20
Alignment explanation
Indices: 67411473--67411534 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 20
67411463 TTGATTTTGA
67411473 TTTT-TTTATTTTTTTCATT
1 TTTTCTTTATTTTTTTCATT
67411492 TTTTCTTTATTTTTTGT--TT
1 TTTTCTTTATTTTTT-TCATT
* *
67411511 TTTTCTTTCTTATTTTCATT
1 TTTTCTTTATTTTTTTCATT
67411531 TTTT
1 TTTT
67411535 TGATTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
18 1 0.03
19 19 0.51
20 16 0.43
21 1 0.03
ACGTcount: A:0.08, C:0.08, G:0.02, T:0.82
Consensus pattern (20 bp):
TTTTCTTTATTTTTTTCATT
Found at i:67411526 original size:56 final size:57
Alignment explanation
Indices: 67411436--67411544 Score: 152
Period size: 56 Copynumber: 1.9 Consensus size: 57
67411426 TGGCCTCTCC
*
67411436 TTTTCTTTTCTTTTTCTTTTTTTCATTTTGATTTTGATTTTTTT-ATTTTTTTCATT
1 TTTTCTTTTCTTTTTCTTTTTTTCATTTTGATTTTCATTTTTTTGATTTTTTTCATT
* *
67411492 TTTTCTTTAT-TTTTTGTTTTTTTC-TTTCTTATTTTCATTTTTTTGATTTTTTT
1 TTTTCTTT-TCTTTTTCTTTTTTTCATTT-TGATTTTCATTTTTTTGATTTTTTT
67411545 ATTGATTGAT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
55 3 0.06
56 35 0.74
57 9 0.19
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.80
Consensus pattern (57 bp):
TTTTCTTTTCTTTTTCTTTTTTTCATTTTGATTTTCATTTTTTTGATTTTTTTCATT
Found at i:67421054 original size:46 final size:46
Alignment explanation
Indices: 67420984--67421077 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
67420974 CAAAGAAAAG
67420984 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
*
67421030 ACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
67421076 AC
1 AC
67421078 GCCACACTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (46 bp):
ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
Found at i:67421864 original size:459 final size:459
Alignment explanation
Indices: 67421030--67422201 Score: 2247
Period size: 459 Copynumber: 2.6 Consensus size: 459
67421020 TATATGATGA
* * *
67421030 ACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATGAACGCCACACTATGAAAGTG
1 ACCTCGATCCACTATCAAGAATGATAGGAACCTTGGTATATGATAAACGCCACACTATGAAAGTG
* *
67421095 ATAAGTTCGAAAACAAGAAATGGATAGACACCACAAGCTAAGCTTGATAAGTCAAATCAATTCCG
66 ATAAGTTTGAAAACAAGAAATGGATAGACGCCACAAGCTAAGCTTGATAAGTCAAATCAATTCCG
67421160 TAAGAACAAA-AGAATTGGATAACTCACAATTCAAAGATTTCATGTATATTCAGCAAAAAGTCTT
131 TAAGAACAAAGAGAATTGGATAACTCACAATTCAAAGATTTCATGTATATTCAGCAAAAAGTCTT
67421224 TTTCTAAAGCTGATTACATCTATTTATATTGCTAGAACAAGGTAGCCGAATAGTCAAAATTATCC
196 TTTCTAAAGCTGATTACATCTATTTATATTGCTAGAACAAGGTAGCCGAATAGTCAAAATTATCC
67421289 ATTCATTGTTAAACTTATTTTTTTATCTATTCTATTTGTTTGGAGCCTTTTATCTATTCTGTTGA
261 ATTCATTGTTAAACTTATTTTTTTATCTATTCTATTTGTTTGGAGCCTTTTATCTATTCTGTTGA
67421354 AATGAACTTAGCCTTACTCAAGTTCACGATCGGGCAAACACATACGACTCGAATCAATCACGAAA
326 AATGAACTTAGCCTTACTCAAGTTCACGATCGGGCAAACACATACGACTCGAATCAATCACGAAA
67421419 CAAGTTCGTATCATTTGGTATCAGAGCAAATGGCCCGAATGACGGTATAGGAAAAACAACAAAGA
391 CAAGTTCGTATCATTTGGTATCAGAGCAAATGGCCCGAATGACGGTATAGGAAAAACAACAAAGA
67421484 AAAG
456 AAAG
67421488 ACCTCGATCCACTATCAAGAATGATAGGAACCTTGGTATATGATAAACGCCACACTATGAAAGTG
1 ACCTCGATCCACTATCAAGAATGATAGGAACCTTGGTATATGATAAACGCCACACTATGAAAGTG
67421553 ATAAGTTTGAAAACAAGAAATGGATAGACGCCACAAGCTAAGCTTGATAAGTCAAATCAATTCCG
66 ATAAGTTTGAAAACAAGAAATGGATAGACGCCACAAGCTAAGCTTGATAAGTCAAATCAATTCCG
67421618 TAAGAACAAAGAGAATTGGATAACTCACAATTCAAAGATTTCATGTATATTCAGCAAAAAGTCTT
131 TAAGAACAAAGAGAATTGGATAACTCACAATTCAAAGATTTCATGTATATTCAGCAAAAAGTCTT
67421683 TTTCTAAAGCTGATTACATCTATTTATATTGCTAGAACAAGGTAGCCGAATAGTCAAAATTATCC
196 TTTCTAAAGCTGATTACATCTATTTATATTGCTAGAACAAGGTAGCCGAATAGTCAAAATTATCC
67421748 ATTCATTGTTAAACTTATTTTTTTATCTATTCTATTTGTTTGGAGCCTTTTATCTATTCTGTTGA
261 ATTCATTGTTAAACTTATTTTTTTATCTATTCTATTTGTTTGGAGCCTTTTATCTATTCTGTTGA
67421813 AATGAACTTAGCCTTACTCAAGTTCACGATCGGGCAAACACATACGACTCGAATCAATCACGAAA
326 AATGAACTTAGCCTTACTCAAGTTCACGATCGGGCAAACACATACGACTCGAATCAATCACGAAA
67421878 CAAGTTCGTATCATTTGGTATCAGAGCAAATGGCCCGAATGACGGTATAGGAAAAACAACAAAGA
391 CAAGTTCGTATCATTTGGTATCAGAGCAAATGGCCCGAATGACGGTATAGGAAAAACAACAAAGA
67421943 AAAG
456 AAAG
67421947 ACCTCGATCCACTATCAAGAATGATAGGAACCTTGGTATATGATAAACGCCACACTATGAAAGTG
1 ACCTCGATCCACTATCAAGAATGATAGGAACCTTGGTATATGATAAACGCCACACTATGAAAGTG
67422012 ATAAGTTTGAAAACAAGAAATGGATAGACGCCACAAGCTAAGCTTGATAAGTCAAATCAATTCCG
66 ATAAGTTTGAAAACAAGAAATGGATAGACGCCACAAGCTAAGCTTGATAAGTCAAATCAATTCCG
*
67422077 TAAGAACAAAGAGAATTGGATAACTCACAATTCAAAGATTTCATATATATTCAGCAAAAAGTCTT
131 TAAGAACAAAGAGAATTGGATAACTCACAATTCAAAGATTTCATGTATATTCAGCAAAAAGTC-T
* * *
67422142 TTTTCTAAGGCTGATTACATCTATTTATAGTGCTAGAACAAGGTAGCCGAATGGTCAAAA
195 TTTTCTAAAGCTGATTACATCTATTTATATTGCTAGAACAAGGTAGCCGAATAGTCAAAA
67422202 ACATCCAACT
Statistics
Matches: 703, Mismatches: 9, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
458 135 0.19
459 510 0.73
460 58 0.08
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (459 bp):
ACCTCGATCCACTATCAAGAATGATAGGAACCTTGGTATATGATAAACGCCACACTATGAAAGTG
ATAAGTTTGAAAACAAGAAATGGATAGACGCCACAAGCTAAGCTTGATAAGTCAAATCAATTCCG
TAAGAACAAAGAGAATTGGATAACTCACAATTCAAAGATTTCATGTATATTCAGCAAAAAGTCTT
TTTCTAAAGCTGATTACATCTATTTATATTGCTAGAACAAGGTAGCCGAATAGTCAAAATTATCC
ATTCATTGTTAAACTTATTTTTTTATCTATTCTATTTGTTTGGAGCCTTTTATCTATTCTGTTGA
AATGAACTTAGCCTTACTCAAGTTCACGATCGGGCAAACACATACGACTCGAATCAATCACGAAA
CAAGTTCGTATCATTTGGTATCAGAGCAAATGGCCCGAATGACGGTATAGGAAAAACAACAAAGA
AAAG
Found at i:67422707 original size:54 final size:54
Alignment explanation
Indices: 67422649--67422756 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
67422639 TGATGTGTAG
*
67422649 ACTATGACATAATTAAAAACACGAACTAAAATAACTAAAACTTAATAAATCAAA
1 ACTATGACATAATTAAAAACACAAACTAAAATAACTAAAACTTAATAAATCAAA
67422703 ACTATGACATAATTAAAAACACAAACTAAAATAACTAAAACTTAATAAATCAAA
1 ACTATGACATAATTAAAAACACAAACTAAAATAACTAAAACTTAATAAATCAAA
67422757 GTCCTTATTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.22
Consensus pattern (54 bp):
ACTATGACATAATTAAAAACACAAACTAAAATAACTAAAACTTAATAAATCAAA
Found at i:67426272 original size:39 final size:39
Alignment explanation
Indices: 67426228--67426303 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
67426218 AAATAATTCA
* * *
67426228 AATATTTATTAATAGTAAAGATTATTGAATAATATTATT
1 AATATTTATTAATAATAAAAATTATTGAAAAATATTATT
* *
67426267 AATATTTTTTAATAATAAAAATTATTTAAAAATATTA
1 AATATTTATTAATAATAAAAATTATTGAAAAATATTA
67426304 AAATACATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (39 bp):
AATATTTATTAATAATAAAAATTATTGAAAAATATTATT
Found at i:67427527 original size:24 final size:24
Alignment explanation
Indices: 67427487--67427532 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
67427477 GCCACATGCT
*
67427487 CGTGTGTCAGGCCGTGTGGTAGGC
1 CGTGTGTCAGGCCGTGTAGTAGGC
*
67427511 CGTGTGTC-GAGCGGTGTAGTAG
1 CGTGTGTCAG-GCCGTGTAGTAG
67427533 ACCATGTAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.11, C:0.17, G:0.46, T:0.26
Consensus pattern (24 bp):
CGTGTGTCAGGCCGTGTAGTAGGC
Found at i:67428686 original size:20 final size:19
Alignment explanation
Indices: 67428663--67428705 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
67428653 TCTTCAACTC
*
67428663 TGTTCTGTTCTATTCTATTT
1 TGTTATGTTCTATTCT-TTT
*
67428683 TGTTATGTTCTGTTCTTTT
1 TGTTATGTTCTATTCTTTT
67428702 TGTT
1 TGTT
67428706 TTTTTGGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.07, C:0.12, G:0.14, T:0.67
Consensus pattern (19 bp):
TGTTATGTTCTATTCTTTT
Done.