Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 204 of 276
Found at i:67838489 original size:15 final size:15
Alignment explanation
Indices: 67838469--67838510 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 15
67838459 ACCACTAACA
67838469 TTTACAAGCATTTCT
1 TTTACAAGCATTTCT
*
67838484 TTTAC-A--ATATCT
1 TTTACAAGCATTTCT
67838496 TTTACAAGCATTTCT
1 TTTACAAGCATTTCT
67838511 GGAGAGTCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
12 10 0.45
13 1 0.05
14 1 0.05
15 10 0.45
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.48
Consensus pattern (15 bp):
TTTACAAGCATTTCT
Found at i:67841985 original size:69 final size:70
Alignment explanation
Indices: 67841853--67841985 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
67841843 TAGTTTATTA
* * * *
67841853 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
67841918 CTTAG
66 CTTAG
*
67841923 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGTCAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
67841986 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:67842795 original size:39 final size:39
Alignment explanation
Indices: 67842749--67843251 Score: 474
Period size: 39 Copynumber: 12.7 Consensus size: 39
67842739 TGTATATTAA
*
67842749 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCTG
1 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCG
*
67842788 GACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCC-
1 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCG
** ** * *
67842826 GAGCTTAAAGACCCGCAGG-TTATATGCTGGAATTATATTCG
1 GA-CTT-AAGGTCCGCAGGCTT-CGTGCTGGAATTGTATCCG
* * * *
67842867 GGCTTAAAGACCTGTAGGCGTT-GTGCTGGAATTGTATCCG
1 GACTTAAGGTCC-GCAGGC-TTCGTGCTGGAATTGTATCCG
67842907 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCG
1 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCG
* * *
67842946 GACTTAAGGTCCGCAAGCTTCTTGCTGGAATTGTATTCG
1 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCG
* *** * *
67842985 GGCTTAAAAACCCGCAGGCTAT-ATGCTGGAATTATATCCG
1 GACTT-AAGGTCCGCAGGCT-TCGTGCTGGAATTGTATCCG
* * * *
67843025 GGCTTAAAGACTCGCAGGCTTTGTGCTGGAATTGTATCCG
1 GACTTAAGGTC-CGCAGGCTTCGTGCTGGAATTGTATCCG
*
67843065 GACTTAAGGTCCGTAGGCTTCGTGCTGGAAATTGTATCCG
1 GACTTAAGGTCCGCAGGCTTCGTGCTGG-AATTGTATCCG
* * * * * *
67843105 GGCTTAAAGACGCACAGGTTTCGTGCTGGAATTGTATCTG
1 GACTTAAGGTC-CGCAGGCTTCGTGCTGGAATTGTATCCG
* ** * *
67843145 GGCTTAAAGACCCGCAGGCTTCGTGTTGGAATTGTATCCA
1 GACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCG
* * * * * *
67843185 GACTTAAGATCCGTAGGCTTCGTGCTGGTACTATATTCG
1 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCG
* *
67843224 GACTTAAGGTCCACAGGCTTCGTACTGG
1 GACTTAAGGTCCGCAGGCTTCGTGCTGG
67843252 TACTATATCC
Statistics
Matches: 380, Mismatches: 69, Indels: 30
0.79 0.14 0.06
Matches are distributed among these distances:
38 4 0.01
39 178 0.47
40 177 0.47
41 19 0.05
42 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCG
Found at i:67842854 original size:40 final size:40
Alignment explanation
Indices: 67842759--67843212 Score: 429
Period size: 40 Copynumber: 11.4 Consensus size: 40
67842749 GACTTAAGGT
* * * **
67842759 CCGCAGGCTTCGTGCTGGAATTGTATCTGGACTT-AAGGT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * *
67842798 CCGCAAGCTTCGTGCTGGAATTGTATCCGAGCTTAAAGAC
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * *
67842838 CCGCAGG-TTATATGCTGGAATTATATTCGGGCTTAAAGAC
1 CCGCAGGCTT-TGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * **
67842878 CTGTAGGCGTTGTGCTGGAATTGTATCCGGACTT-AAGGT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * **
67842917 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGGT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * *
67842956 CCGCAAGCTTCT-TGCTGGAATTGTATTCGGGCTTAAAAAC
1 CCGCAGGCTT-TGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * *
67842996 CCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * **
67843036 TCGCAGGCTTTGTGCTGGAATTGTATCCGGACTT-AAGGT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* *
67843075 CCGTAGGCTTCGTGCTGGAAATTGTATCCGGGCTTAAAGAC
1 CCGCAGGCTTTGTGCTGG-AATTGTATCCGGGCTTAAAGAC
* * *
67843116 GCACAGG-TTTCGTGCTGGAATTGTATCTGGGCTTAAAGAC
1 CCGCAGGCTTT-GTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * *
67843156 CCGCAGGCTTCGTGTTGGAATTGTATCCAGACTT-AAGAT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* *
67843195 CCGTAGGCTTCGTGCTGG
1 CCGCAGGCTTTGTGCTGG
67843213 TACTATATTC
Statistics
Matches: 340, Mismatches: 65, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
39 138 0.41
40 185 0.54
41 17 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:67842913 original size:80 final size:80
Alignment explanation
Indices: 67842759--67843230 Score: 419
Period size: 79 Copynumber: 6.0 Consensus size: 80
67842749 GACTTAAGGT
* * * * * * *
67842759 CCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGTCCGCAAGC-TTCGTGCTGGAATTGTA
1 CCGCAGGCTTCATGCTGGAATTATATCCGGGCTTAAAGACCGCAGGCTTTCGTGCTGGAATTGTA
67842823 TCC-GAGCTTAAAGAC
66 TCCGGA-CTTAAAGAC
* * * *
67842838 CCGCAGG-TTATATGCTGGAATTATATTCGGGCTTAAAGACCTGTAGGCGTT-GTGCTGGAATTG
1 CCGCAGGCTT-CATGCTGGAATTATATCCGGGCTTAAAGACC-GCAGGCTTTCGTGCTGGAATTG
**
67842901 TATCCGGACTT-AAGGT
64 TATCCGGACTTAAAGAC
* * * * * * *
67842917 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGC-TTCTTGCTGGAATTGTA
1 CCGCAGGCTTCATGCTGGAATTATATCCGGGCTTAAAGACCGCAGGCTTTCGTGCTGGAATTGTA
* * *
67842981 TTCGGGCTTAAAAAC
66 TCCGGACTTAAAGAC
67842996 CCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACTCGCAGGCTTT-GTGCTGGAATTG
1 CCGCAGGCT-TCATGCTGGAATTATATCCGGGCTTAAAGAC-CGCAGGCTTTCGTGCTGGAATTG
**
67843059 TATCCGGACTT-AAGGT
64 TATCCGGACTTAAAGAC
* * * *
67843075 CCGTAGGCTTCGTGCTGGAAATTGTATCCGGGCTTAAAGACGCACAGG-TTTCGTGCTGGAATTG
1 CCGCAGGCTTCATGCTGG-AATTATATCCGGGCTTAAAGAC-CGCAGGCTTTCGTGCTGGAATTG
* *
67843139 TATCTGGGCTTAAAGAC
64 TATCCGGACTTAAAGAC
* * * * * * * * *
67843156 CCGCAGGCTTCGTGTTGGAATTGTATCCAGACTT-AAGATCCGTAGGC-TTCGTGCTGGTACTAT
1 CCGCAGGCTTCATGCTGGAATTATATCCGGGCTTAAAGA-CCGCAGGCTTTCGTGCTGGAATTGT
*
67843219 ATTCGGACTTAA
65 ATCCGGACTTAA
67843231 GGTCCACAGG
Statistics
Matches: 317, Mismatches: 60, Indels: 32
0.78 0.15 0.08
Matches are distributed among these distances:
77 2 0.01
78 27 0.09
79 148 0.47
80 115 0.36
81 25 0.08
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (80 bp):
CCGCAGGCTTCATGCTGGAATTATATCCGGGCTTAAAGACCGCAGGCTTTCGTGCTGGAATTGTA
TCCGGACTTAAAGAC
Found at i:67843049 original size:158 final size:158
Alignment explanation
Indices: 67842749--67843251 Score: 667
Period size: 158 Copynumber: 3.2 Consensus size: 158
67842739 TGTATATTAA
*
67842749 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGTCCGCAAGCTTCGTGCT
1 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCT
* * * *
67842814 GGAATTGTATCCGAGCTTAAAGACCCGCAGGTTATATGCTGGAATTATATTCGGGCTTAAAGAC-
66 GGAATTGTATTCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACT
*
67842878 CTGTAGGCGTTGTGCTGGAATTGTATCCG
131 C-GTAGGCTTTGTGCTGGAATTGTATCCG
*
67842907 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCTTGCT
1 GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCT
*
67842972 GGAATTGTATTCGGGCTTAAAAACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACT
66 GGAATTGTATTCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACT
*
67843037 CGCAGGCTTTGTGCTGGAATTGTATCCG
131 CGTAGGCTTTGTGCTGGAATTGTATCCG
* * * * *
67843065 GACTTAAGGTCCGTAGGCTTCGTGCTGGAAATTGTATCCGGGCTTAAAG-ACGCACAGGTTTCGT
1 GACTTAAGGTCCGCAGGCTTCGTGCTGG-AATTGTATCCGGACTTAAGGTCCGCA-A-GCTTCGT
* * * * *
67843129 GCTGGAATTGTA-TCTGGGCTTAAAGACCCGCAGGCT-TCGTGTTGGAATTGTATCCAGACTT-A
63 GCTGGAATTGTATTC-GGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAA
* * * * *
67843191 AGA-TCCGTAGGCTTCGTGCTGGTACTATATTCG
126 AGACT-CGTAGGCTTTGTGCTGGAATTGTATCCG
* *
67843224 GACTTAAGGTCCACAGGCTTCGTACTGG
1 GACTTAAGGTCCGCAGGCTTCGTGCTGG
67843252 TACTATATCC
Statistics
Matches: 308, Mismatches: 30, Indels: 13
0.88 0.09 0.04
Matches are distributed among these distances:
158 179 0.58
159 74 0.24
160 55 0.18
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (158 bp):
GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCT
GGAATTGTATTCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACT
CGTAGGCTTTGTGCTGGAATTGTATCCG
Found at i:67843252 original size:39 final size:39
Alignment explanation
Indices: 67843185--67843259 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
67843175 ATTGTATCCA
** *
67843185 GACTTAAGATCCGTAGGCTTCGTGCTGGTACTATATTCG
1 GACTTAAGATCCACAGGCTTCGTACTGGTACTATATTCG
*
67843224 GACTTAAGGTCCACAGGCTTCGTACTGGTACTATAT
1 GACTTAAGATCCACAGGCTTCGTACTGGTACTATAT
67843260 CCGAGCTTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (39 bp):
GACTTAAGATCCACAGGCTTCGTACTGGTACTATATTCG
Found at i:67846141 original size:2 final size:2
Alignment explanation
Indices: 67846136--67846161 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67846126 CATATATATA
67846136 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
67846162 ATGCTAATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:67848345 original size:69 final size:70
Alignment explanation
Indices: 67848213--67848345 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
67848203 TAGTTTATTA
* * * * *
67848213 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTATGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
67848278 CTTAG
66 CTTAG
*
67848283 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGTCAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
67848346 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 34 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:67849155 original size:39 final size:39
Alignment explanation
Indices: 67849103--67849446 Score: 339
Period size: 40 Copynumber: 8.7 Consensus size: 39
67849093 ATTTGATGTA
* *
67849103 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
67849142 TATCCAGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
67849181 TCTCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAATTG
* * *
67849221 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* *
67849261 TATCCGGACTTAAGGTCTGCAGGCTTCGTGCTGGAAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGG-AATTG
* * * *
67849301 TATCCGGGCTTAAAGACCCACATGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
67849341 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
67849381 TATCCAGACTTAAGATCCGTAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
** * *
67849420 TATTTGAACTTAAGGTCCGCAGGCTTC
1 TATCCGGACTTAAGATCCGCAGGCTTC
67849447 ATACTGGTAC
Statistics
Matches: 258, Mismatches: 42, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
39 109 0.42
40 130 0.50
41 19 0.07
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
Found at i:67849214 original size:40 final size:40
Alignment explanation
Indices: 67849119--67849414 Score: 348
Period size: 40 Copynumber: 7.5 Consensus size: 40
67849109 GACTTAAGGT
* * * **
67849119 CCGCAGGCTTCGTGCTGGAATTATATCCAGACTT-AAGGT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* *
67849158 CCGCAAGCTTCGTGCTGGAATTGTCTCCGGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* *
67849198 CCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * **
67849238 CCGCAGGCTTTGTGCTGGAATTGTATCCGGACTT-AAGGT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
*
67849277 CTGCAGGCTTCGTGCTGGAAATTGTATCCGGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTGG-AATTGTATCCGGGCTTAAAGAC
* * *
67849318 CCACATGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * *
67849358 CCGCAGGCTTCGTGCTGGTATTGTATCCAGACTT-AAGAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
*
67849397 CCGTAGGCTTCGTGCTGG
1 CCGCAGGCTTCGTGCTGG
67849415 TACTATATTT
Statistics
Matches: 219, Mismatches: 33, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
39 70 0.32
40 130 0.59
41 19 0.09
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:67849363 original size:120 final size:119
Alignment explanation
Indices: 67849101--67849414 Score: 443
Period size: 120 Copynumber: 2.6 Consensus size: 119
67849091 ATATTTGATG
* ** * *
67849101 TATATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTATATCCAGACTTAAGGTCCGCAAG
1 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAGG
* *
67849165 CTTCGTGCTGGAATTGTCTCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAAT
66 CTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAAT
* * *
67849219 TATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAGG
1 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAGG
* *
67849284 CTTCGTGCTGGAAATTGTATCCGGGCTTAAAGACCCACATGCT-TCGTGCTGGAAT
66 CTTCGTGCTGG-AATTGTATCCGGGCTTAAAGACCCACAGGCTAT-ATGCTGGAAT
* * * * *
67849339 TGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTATTGTATCCAGACTTAAGATCCGTAGG
1 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAGG
67849404 CTTCGTGCTGG
66 CTTCGTGCTGG
67849415 TACTATATTT
Statistics
Matches: 173, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
118 12 0.07
119 56 0.32
120 105 0.61
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (119 bp):
TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAGG
CTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAAT
Found at i:67851823 original size:6 final size:6
Alignment explanation
Indices: 67851805--67851892 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
67851795 AAGAAACATT
* * * *
67851805 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATTAG- GTGACAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
67851854 ATCAGA ATCAGT ATCAAGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA AT
67851893 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.82
7 5 0.08
8 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:67851882 original size:31 final size:31
Alignment explanation
Indices: 67851789--67851892 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 31
67851779 TAACCCATTA
* * *
67851789 CAGAATAAGAAACATTATC-AG-AACTAGAAT
1 CAGAATCAGAATCAGTATCAAGTAAC-AGAAT
* * * * * *
67851819 CAGAATTAGAATCAGAATTAGGTGACAAAAT
1 CAGAATCAGAATCAGTATCAAGTAACAGAAT
67851850 CAGAATCAGAATCAGTATCAAGTAACAGAAT
1 CAGAATCAGAATCAGTATCAAGTAACAGAAT
*
67851881 CAAAATCAGAAT
1 CAGAATCAGAAT
67851893 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
30 14 0.25
31 41 0.72
32 2 0.04
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAAGTAACAGAAT
Found at i:67851888 original size:19 final size:19
Alignment explanation
Indices: 67851844--67851892 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
67851834 AATTAGGTGA
67851844 CAAAATC-AGAATCAGAAT
1 CAAAATCAAGAATCAGAAT
**
67851862 CAGTATCAAGTAA-CAGAAT
1 CAAAATCAAG-AATCAGAAT
67851881 CAAAATC-AGAAT
1 CAAAATCAAGAAT
67851893 GTGAATGCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
17 2 0.08
18 7 0.29
19 13 0.54
20 2 0.08
ACGTcount: A:0.53, C:0.16, G:0.12, T:0.18
Consensus pattern (19 bp):
CAAAATCAAGAATCAGAAT
Found at i:67852059 original size:27 final size:26
Alignment explanation
Indices: 67852029--67852130 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
67852019 ACTCAGTTAT
* *
67852029 CAGATGTTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* *
67852056 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
* * *
67852082 CAGATATTTGTGGCATAGCCGCCAGAAA
1 CAGATA-TTGTGACAAAGCCACCAG-AA
* *
67852110 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGACAAAGCCAC
67852131 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.77
28 8 0.12
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:67852324 original size:22 final size:23
Alignment explanation
Indices: 67852299--67852349 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
67852289 TGGCATACAA
* *
67852299 CCATAAT-TAGGTTGGCACAGAG
1 CCATAATGTAGGTTGACACAAAG
67852321 CCAT-ATGTAGGTTGACACAAAG
1 CCATAATGTAGGTTGACACAAAG
67852343 CCATAAT
1 CCATAAT
67852350 CAGAAGGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (23 bp):
CCATAATGTAGGTTGACACAAAG
Found at i:67852835 original size:27 final size:27
Alignment explanation
Indices: 67852777--67853198 Score: 497
Period size: 27 Copynumber: 15.7 Consensus size: 27
67852767 AGGGGCAAAA
* * * *
67852777 TGGTAATTTTACCCGACA-AGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
67852803 CGGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
67852830 TAGTAATTCTACCTTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
67852857 TGGTAATTCTACCCTATAGGGGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
67852884 CGATAATTCTACCCTACAGGGGTA-TT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
67852910 CGGTAATTTTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
67852937 CGGTAATTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * *
67852964 CGGTAATTCTACCCTACAAGGGAATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
67852991 CGATAATTCTACCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTT
*
67853018 TGGTAATTCTACCCTACAGTGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
67853045 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
67853072 CGATAATTCTACCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
67853099 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
67853126 CGATAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
67853153 TGGTAATTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
67853180 CGATAATTCTACCCTACAG
1 TGGTAATTCTACCCTACAG
67853199 TGGTTTTGGG
Statistics
Matches: 349, Mismatches: 45, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
26 37 0.11
27 312 0.89
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:67854471 original size:43 final size:43
Alignment explanation
Indices: 67854381--67854543 Score: 163
Period size: 43 Copynumber: 3.8 Consensus size: 43
67854371 TTCTGATATA
* *
67854381 TGATTT-CATGTAAGACCACGTCTAGGACATTGGCATCG-ACTT
1 TGATTTACGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT
* * * *
67854423 ATGATTTATGTGTAAGACCATGTCTGGGACATCGGCATTGTATT
1 -TGATTTACGTGTAAGACCACGTCTGGGACATTGGCATCGTATT
** *
67854467 TGATTT-CGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATT
1 TGATTTACGTGTAAGACCACGTCTGGGACATTGGCATCG-TATT
* * *
67854510 TGA-TTACATGTAAGACCACATCTGGAACATTGGC
1 TGATTTACGTGTAAGACCACGTCTGGGACATTGGC
67854544 TTTGTATGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
42 29 0.29
43 41 0.41
44 28 0.28
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCACGTCTGGGACATTGGCATCGTATT
Found at i:67856625 original size:20 final size:20
Alignment explanation
Indices: 67856600--67856639 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
67856590 TTTTAAGAGA
*
67856600 AGAATTACCTGGGATTTCTT
1 AGAATTACCTAGGATTTCTT
67856620 AGAATTACCTAGGATTTCTT
1 AGAATTACCTAGGATTTCTT
67856640 CCAAGCTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (20 bp):
AGAATTACCTAGGATTTCTT
Found at i:67861031 original size:59 final size:59
Alignment explanation
Indices: 67860959--67861071 Score: 208
Period size: 59 Copynumber: 1.9 Consensus size: 59
67860949 GTTTGAAGGG
67860959 ATTTGTGAAATCTTTCGGGATTTCAAGGATCTTTAGGACTATCTTTATTTCTTGTTGTA
1 ATTTGTGAAATCTTTCGGGATTTCAAGGATCTTTAGGACTATCTTTATTTCTTGTTGTA
* *
67861018 ATTTGTGAAATCTTTCGGGATTTCAAGGATCTTTAGGACTTTTTTTATTTCTTG
1 ATTTGTGAAATCTTTCGGGATTTCAAGGATCTTTAGGACTATCTTTATTTCTTG
67861072 CTGTTTTGTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.49
Consensus pattern (59 bp):
ATTTGTGAAATCTTTCGGGATTTCAAGGATCTTTAGGACTATCTTTATTTCTTGTTGTA
Found at i:67861861 original size:16 final size:16
Alignment explanation
Indices: 67861840--67861878 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
67861830 CATATTTTAC
*
67861840 ACCTTTTGCATAAAGG
1 ACCTTTTGCAAAAAGG
*
67861856 ACCTTTTGTAAAAAGG
1 ACCTTTTGCAAAAAGG
*
67861872 TCCTTTT
1 ACCTTTT
67861879 AGGGGTTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (16 bp):
ACCTTTTGCAAAAAGG
Found at i:67866242 original size:43 final size:42
Alignment explanation
Indices: 67866083--67866242 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 42
67866073 ATAGGATTTC
* *
67866083 CGATATGTGATTTCATGTAAGACCACATCTGGGACACTGGCAT
1 CGATATGTGATTACATGTAAGACCACGTCTGGGACA-TGGCAT
* * * *
67866126 CGACT-TATGATTTACATGTAAGACCATGTTTGGGACATCGACAT
1 CGA-TATGTGA-TTACATGTAAGACCACGTCTGGGACAT-GGCAT
* * * *
67866170 CG-TAAGTGTTTTCATGTAAGACC-CTGTCTGGGATAGTGGCAT
1 CGATATGTGATTACATGTAAGACCAC-GTCTGGGACA-TGGCAT
* *
67866212 CGATATTTGATTACATGTAATACCACGTCTG
1 CGATATGTGATTACATGTAAGACCACGTCTG
67866243 TGATGTTGGC
Statistics
Matches: 90, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
42 28 0.31
43 32 0.36
44 30 0.33
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (42 bp):
CGATATGTGATTACATGTAAGACCACGTCTGGGACATGGCAT
Found at i:67867408 original size:27 final size:26
Alignment explanation
Indices: 67867366--67867451 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
67867356 AGCATGGCTG
* * * * *
67867366 CCAGAATAGACATTGTGACAGCGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
67867392 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
67867419 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
67867446 CCAGAA
1 CCAGAA
67867452 TACTTCCTCC
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 12 0.23
27 41 0.77
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:67875880 original size:22 final size:22
Alignment explanation
Indices: 67875794--67875880 Score: 93
Period size: 22 Copynumber: 4.0 Consensus size: 22
67875784 CACTAAGTCA
* *
67875794 ACAGGACAGCTCAACGCCATAG
1 ACAGGACGGCTCAACGCCGTAG
* * *
67875816 ACAAGACGGCTCAATGCTGTAG
1 ACAGGACGGCTCAACGCCGTAG
* *
67875838 ACAGGACGACTCAACGTCGTAG
1 ACAGGACGGCTCAACGCCGTAG
* *
67875860 ACAGGACGGCTAAAGGCCGTA
1 ACAGGACGGCTCAACGCCGTA
67875881 AATATTGCAG
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.33, C:0.26, G:0.28, T:0.13
Consensus pattern (22 bp):
ACAGGACGGCTCAACGCCGTAG
Found at i:67876547 original size:17 final size:19
Alignment explanation
Indices: 67876525--67876559 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
67876515 TTTACACAGG
67876525 CAGGCCCA-CG-GGCCCAT
1 CAGGCCCATCGTGGCCCAT
67876542 CAGGCCCATCGTGGCCCA
1 CAGGCCCATCGTGGCCCA
67876560 GAACAGCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.17, C:0.46, G:0.29, T:0.09
Consensus pattern (19 bp):
CAGGCCCATCGTGGCCCAT
Found at i:67879047 original size:19 final size:20
Alignment explanation
Indices: 67879008--67879047 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
67878998 CCAGCCCAGT
67879008 CCAACCAACACACCACCTGTA
1 CCAACCAACACACCA-CTGTA
67879029 CCAACCAACACACCA-TGTA
1 CCAACCAACACACCACTGTA
67879048 GGGATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
21 15 0.79
ACGTcount: A:0.40, C:0.45, G:0.05, T:0.10
Consensus pattern (20 bp):
CCAACCAACACACCACTGTA
Found at i:67879491 original size:27 final size:26
Alignment explanation
Indices: 67879430--67879491 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
67879420 GTGCATAATT
* * *
67879430 GTCATTCTACCATACAGGGGTATTAC
1 GTCATTTTACCATACAAGGGCATTAC
* *
67879456 GATCGTTTTACCCTACAAGGGCATTAC
1 G-TCATTTTACCATACAAGGGCATTAC
67879483 AGTCATTTT
1 -GTCATTTT
67879492 GCACTAAGGG
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 1 0.04
27 26 0.93
28 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (26 bp):
GTCATTTTACCATACAAGGGCATTAC
Found at i:67881948 original size:40 final size:39
Alignment explanation
Indices: 67881904--67882008 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
67881894 AGTGACCATA
*
67881904 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
67881944 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
67881982 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
67882009 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:67881965 original size:39 final size:40
Alignment explanation
Indices: 67881864--67882027 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
67881854 TTGAATGATG
* *
67881864 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
67881904 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
67881943 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
67881983 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
67882023 TCCGG
1 TCCGG
67882028 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:67882027 original size:79 final size:80
Alignment explanation
Indices: 67881864--67882014 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
67881854 TTGAATGATG
*
67881864 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
67881929 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
67881944 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
67882006 TTGAACGAG
64 TTGAACGAG
67882015 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:67889457 original size:40 final size:40
Alignment explanation
Indices: 67889374--67889559 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
67889364 TTGAATGATG
* * * *
67889374 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
67889414 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67889454 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67889494 TCCGGGTTAAGTCCCGAAGGCATTTGTGGGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67889535 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67889560 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67897140 original size:56 final size:56
Alignment explanation
Indices: 67897079--67897231 Score: 243
Period size: 56 Copynumber: 2.7 Consensus size: 56
67897069 AGTAAGACCA
* * *
67897079 TGGCATCGATATATGACTCTAATATATGTGTGCGAGTAAGAAAACGTTTAATACGT
1 TGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGAAAACGTTTAATACGT
* **
67897135 TGGCATCAATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGAAAACGTTTAATACGT
*
67897191 TGGAATCAATATGTGACTCTGATATATGTGTGCGAGTAAGA
1 TGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGA
67897232 CCCTATCTGG
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 89 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (56 bp):
TGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGAAAACGTTTAATACGT
Found at i:67900187 original size:27 final size:27
Alignment explanation
Indices: 67900157--67900553 Score: 309
Period size: 27 Copynumber: 14.7 Consensus size: 27
67900147 TATAGGGTAG
* * **
67900157 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * * *
67900184 AATTACCAAAATAACCTCGAATAGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
67900211 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
67900238 AATTACCAAAATACCC-TGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
67900264 AATTACTAAAATACCCTTGATTTTTGA
1 AATTACCAAAATACCCTTGATTTGTAA
** ** **
67900291 AATTACTGAAATACCCTCAACCTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** ** *
67900318 AATTACTGAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
67900345 AATTATCGAAATACCCTCGATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
67900372 AATTACCAAAATACCCTTAATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
67900399 AATTACCAAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
* **
67900426 AATTA-CAATAATACCCCTGATTTACAA
1 AATTACCAA-AATACCCTTGATTTGTAA
**
67900453 AATTA-CAGAAATACCCTTGACTTTCAAA
1 AATTACCA-AAATACCCTTGA-TTTGTAA
* * *
67900481 AATTA-TAGAAATACCGTT-AGTTTGCAA
1 AATTACCA-AAATACCCTTGA-TTTGTAA
* * * *
67900508 AATTACCGAAATATCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
67900535 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
67900554 TAAGGTGAAA
Statistics
Matches: 306, Mismatches: 58, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
26 28 0.09
27 256 0.84
28 22 0.07
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:67900814 original size:41 final size:41
Alignment explanation
Indices: 67900764--67900886 Score: 156
Period size: 41 Copynumber: 3.0 Consensus size: 41
67900754 CGGAGGAAGA
* *
67900764 AATTAAGGATCGCATGGTTGCTTAACGATCGTAGATCCACC
1 AATTAAGGATCGCATGGTTGCTTGACGACCGTAGATCCACC
* * * * * *
67900805 AATTGAGGATCGCATAGTTGTTTGATGACCGTGGATCCACT
1 AATTAAGGATCGCATGGTTGCTTGACGACCGTAGATCCACC
* *
67900846 AATTAAGGATCGCATGGTTGCTTGACGACCATGGATCCACC
1 AATTAAGGATCGCATGGTTGCTTGACGACCGTAGATCCACC
67900887 GGTGGCTTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (41 bp):
AATTAAGGATCGCATGGTTGCTTGACGACCGTAGATCCACC
Found at i:67901075 original size:22 final size:22
Alignment explanation
Indices: 67901024--67901076 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
67901014 CCAATTATTA
**
67901024 TGATTATGGCTTTGCGCCAACC
1 TGATTATGGCGCTGCGCCAACC
* *
67901046 T-ACATATGGCGCTGTGCCAACC
1 TGA-TTATGGCGCTGCGCCAACC
67901068 TGATTATGG
1 TGATTATGG
67901077 TTGTGTGCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
21 1 0.04
22 22 0.92
23 1 0.04
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.30
Consensus pattern (22 bp):
TGATTATGGCGCTGCGCCAACC
Found at i:67903705 original size:27 final size:26
Alignment explanation
Indices: 67903675--67903906 Score: 151
Period size: 27 Copynumber: 8.7 Consensus size: 26
67903665 TATAAGGTAG
* * **
67903675 AATTACTAAAATACCTTTGGTTTACAA
1 AATTACCAAAATACC-CTGGTTTGTAA
67903702 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACC-CTGGTTTGTAA
67903729 AATTACCAAAATACCCTGGTTTGTAA
1 AATTACCAAAATACCCTGGTTTGTAA
** *
67903755 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATA-CCCTGGTTTGTAA
** * ***
67903782 AATTACTGAAATACTCTCGACCTGTAA
1 AATTACCAAAATACCCT-GGTTTGTAA
* **
67903809 ATTTACCAAAATACCCTAGACTTGTAA
1 AATTACCAAAATACCCT-GGTTTGTAA
* * * * *
67903836 AGTTATCGAAATACTCTCGATTTGTAA
1 AATTACCAAAATACCCT-GGTTTGTAA
* ***
67903863 AATTATCAAAATAACCCAAAATTTG-AA
1 AATTACCAAAAT-ACCC-TGGTTTGTAA
*
67903890 AATTACCGAAATACCCT
1 AATTACCAAAATACCCT
67903907 TAATTTGGAA
Statistics
Matches: 166, Mismatches: 35, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
26 31 0.19
27 127 0.77
28 8 0.05
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
AATTACCAAAATACCCTGGTTTGTAA
Found at i:67903913 original size:54 final size:54
Alignment explanation
Indices: 67903700--67903921 Score: 198
Period size: 54 Copynumber: 4.1 Consensus size: 54
67903690 TTTGGTTTAC
*** * *
67903700 AAAATTACCAAAATA-CCACTGGTTTGTAAAATTACCAAAATACCCT-GGTTTGT
1 AAAATTACCAAAATACCCA-AAATTTGTAAAATTACCGAAATACCCTCGATTTGT
** * * * **
67903753 AAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACTCTCGACCTGT
1 AAAATTACCAAAATACCCAAAATTTGTAAAATTACCGAAATACCCTCGATTTGT
* * * * * * *
67903807 AAATTTACCAAAATACCCTAGACTTGTAAAGTTATCGAAATACTCTCGATTTGT
1 AAAATTACCAAAATACCCAAAATTTGTAAAATTACCGAAATACCCTCGATTTGT
* ** *
67903861 AAAATTATCAAAATAACCCAAAATTTG-AAAATTACCGAAATACCCTTAATTTGG
1 AAAATTACCAAAAT-ACCCAAAATTTGTAAAATTACCGAAATACCCTCGATTTGT
67903915 AAAATTA
1 AAAATTA
67903922 TAGAAATACC
Statistics
Matches: 134, Mismatches: 32, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 36 0.27
54 89 0.66
55 9 0.07
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCAAAATTTGTAAAATTACCGAAATACCCTCGATTTGT
Found at i:67903917 original size:27 final size:27
Alignment explanation
Indices: 67903700--67903986 Score: 172
Period size: 27 Copynumber: 10.6 Consensus size: 27
67903690 TTTGGTTTAC
**
67903700 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACC-CTTAATTTGT
**
67903727 AAAATTACCAAAATACCC-TGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
*
67903753 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* ** * ** **
67903780 GAAATTACTGAAATACTCTCGACCTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* *
67903807 AAATTTACCAAAATACCC-TAGACTTGT
1 AAAATTACCAAAATACCCTTA-ATTTGT
* * * * **
67903834 AAAGTTATCGAAATACTCTCGATTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* **
67903861 AAAATTATCAAAATAACCCAAAATTTG-
1 AAAATTACCAAAAT-ACCCTTAATTTGT
* *
67903888 AAAATTACCGAAATACCCTTAATTTGG
1 AAAATTACCAAAATACCCTTAATTTGT
* * **
67903915 AAAATTA-TAGAAATACCCCTAATTTAC
1 AAAATTACCA-AAATACCCTTAATTTGT
* * **
67903942 AAAATTACAAAAACACCCTTAACTTTAA
1 AAAATTACCAAAATACCCTTAA-TTTGT
67903970 AAAATTA-CAGAAATACC
1 AAAATTACCA-AAATACC
67903987 ATTGGTTCGC
Statistics
Matches: 204, Mismatches: 47, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
26 37 0.18
27 141 0.69
28 26 0.13
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAATTTGT
Found at i:67904015 original size:55 final size:53
Alignment explanation
Indices: 67903888--67904016 Score: 123
Period size: 55 Copynumber: 2.4 Consensus size: 53
67903878 CCAAAATTTG
** * * *
67903888 AAAATTACCGAAATACCCTTAATTTGGAAAATTATAGAAATACCCCTAATTTAC
1 AAAATTA-CGAAATACCCTTAATTTAAAAAATTACAGAAATACCACTAATTCAC
* * * ** *
67903942 AAAATTACAAAAACACCCTTAACTTTAAAAAATTACAGAAATACCATTGGTTCGC
1 AAAATTAC-GAAATACCCTTAA-TTTAAAAAATTACAGAAATACCACTAATTCAC
67903997 AAAATTATCGAAATACCCTT
1 AAAATTA-CGAAATACCCTT
67904017 GGTTTTTAGA
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
53 1 0.02
54 18 0.31
55 39 0.66
56 1 0.02
ACGTcount: A:0.46, C:0.19, G:0.07, T:0.28
Consensus pattern (53 bp):
AAAATTACGAAATACCCTTAATTTAAAAAATTACAGAAATACCACTAATTCAC
Found at i:67904557 original size:22 final size:22
Alignment explanation
Indices: 67904506--67904569 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
67904496 CCAATTATTT
* *
67904506 TGATTATGGCTTTGCGCCAACC
1 TGATTATGGCTCTGTGCCAACC
*
67904528 T-ACATATGGCTCTGTGCCAACC
1 TGA-TTATGGCTCTGTGCCAACC
* *
67904550 TGATTATGGTTGTGTGCCAA
1 TGATTATGGCTCTGTGCCAA
67904570 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACC
Found at i:67907878 original size:6 final size:6
Alignment explanation
Indices: 67907859--67908003 Score: 127
Period size: 6 Copynumber: 23.7 Consensus size: 6
67907849 AAGAAACATT
* *
67907859 ATCAGA A-CTAGA ATTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
67907908 ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA ATCAGA ATCAGA ATCAAA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
67907957 ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA
67908004 AGTAACAGAA
Statistics
Matches: 115, Mismatches: 13, Indels: 22
0.77 0.09 0.15
Matches are distributed among these distances:
5 5 0.04
6 98 0.85
7 9 0.08
8 3 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:67907913 original size:25 final size:25
Alignment explanation
Indices: 67907879--67907998 Score: 163
Period size: 25 Copynumber: 4.8 Consensus size: 25
67907869 GAATTAGAAT
*
67907879 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
67907904 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
67907929 CAGAATCAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
* * *
67907952 TCAAAATCAAAATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
*
67907978 CAGAATCAAAATCAGAATCAG
1 CAGAATCAGAATCAGAATCAG
67907999 TATCAAGTAA
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
23 1 0.01
24 18 0.21
25 65 0.76
26 2 0.02
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:67907982 original size:31 final size:31
Alignment explanation
Indices: 67907929--67908059 Score: 176
Period size: 32 Copynumber: 4.2 Consensus size: 31
67907919 AATCAGGTGA
*
67907929 CAGAATCAGAATCA-G-AATCAGAATCAAAAT
1 CAGAATCAGTATCAGGTAA-CAGAATCAAAAT
*
67907959 CAAAATCAGTATCAGGTAACAGAATCAAAAT
1 CAGAATCAGTATCAGGTAACAGAATCAAAAT
* *
67907990 CAGAATCAGTATCAAGTAACAGAATAAAAAAT
1 CAGAATCAGTATCAGGTAACAGAAT-CAAAAT
*
67908022 CAGAATTAGTATCAGGTAACAGAATCAAAAAT
1 CAGAATCAGTATCAGGTAACAGAATC-AAAAT
67908054 CAGAAT
1 CAGAAT
67908060 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
30 12 0.13
31 36 0.40
32 41 0.46
ACGTcount: A:0.53, C:0.15, G:0.14, T:0.19
Consensus pattern (31 bp):
CAGAATCAGTATCAGGTAACAGAATCAAAAT
Found at i:67908239 original size:27 final size:26
Alignment explanation
Indices: 67908196--67908269 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
67908186 GCTCAGTTAT
** *
67908196 CAGATATTGTGATAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
67908223 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
67908249 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
67908270 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 20 0.48
27 22 0.52
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:67908259 original size:26 final size:27
Alignment explanation
Indices: 67908209--67908269 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
67908199 ATATTGTGAT
* *
67908209 AGAGTCACCAGATACAGATATTGTGGC
1 AGAGCCACCAGATACAGATAATGTGGC
67908236 AGAGCCACCAGA-ACAGATAATGTGGC
1 AGAGCCACCAGATACAGATAATGTGGC
*
67908262 AAAGCCAC
1 AGAGCCAC
67908270 TTAACAGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.38, C:0.23, G:0.25, T:0.15
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGC
Found at i:67908461 original size:22 final size:22
Alignment explanation
Indices: 67908430--67908479 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
67908420 AAATAGTTTT
*
67908430 GCACACAGCCATA-ATCAGGTTG
1 GCACAGAGCCATATAT-AGGTTG
67908452 GCACAGAGCCATATATAGGTTG
1 GCACAGAGCCATATATAGGTTG
*
67908474 ACACAG
1 GCACAG
67908480 CATAATCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (22 bp):
GCACAGAGCCATATATAGGTTG
Found at i:67908971 original size:27 final size:26
Alignment explanation
Indices: 67908941--67909298 Score: 365
Period size: 27 Copynumber: 13.3 Consensus size: 26
67908931 AAGGTATCTC
* *
67908941 GGTAATTCCACACTATAGGGGTAATTT
1 GGTAATTCTACCCTATAGGGGT-ATTT
*
67908968 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTATAGGGGTATTT
67908994 CGGTAATTCTACCCTATAGGGGTATTCT
1 -GGTAATTCTACCCTATAGGGGTATT-T
* *
67909022 AGTAATTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTATAGGGGTATT-T
* *
67909049 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTATAGGGGTATT-T
*
67909076 GGTAATTCTACCCTATAGCGGTATTTT
1 GGTAATTCTACCCTATAGGGGTA-TTT
*
67909103 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTATAGGGGTATTT
* * ** *
67909129 CGGTAATTTTACCCTACAGTAGTATTCC
1 -GGTAATTCTACCCTATAGGGGTATT-T
* * * *
67909157 GGTAATTCTATCCTACAAGGGTATTCC
1 GGTAATTCTACCCTATAGGGGTATT-T
* *
67909184 GGTAATTCTACCCTACAAGGGTATTCT
1 GGTAATTCTACCCTATAGGGGTATT-T
**
67909211 AATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTATAGGGGTA-TTT
*
67909238 GGTAATTCTACCTTATAGGGGTATTT
1 GGTAATTCTACCCTATAGGGGTATTT
* * *
67909264 CGGTATTTCTACCCTACAAGGGTATTT
1 -GGTAATTCTACCCTATAGGGGTATTT
67909291 CGGTAATT
1 -GGTAATT
67909299 TTGTAAATCG
Statistics
Matches: 288, Mismatches: 36, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.03
27 273 0.95
28 5 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (26 bp):
GGTAATTCTACCCTATAGGGGTATTT
Found at i:67909011 original size:54 final size:53
Alignment explanation
Indices: 67908915--67909298 Score: 412
Period size: 54 Copynumber: 7.1 Consensus size: 53
67908905 GGGGCAAAAC
* * * * * * *
67908915 GGTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACACTATAGGGGTAATTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT-ATTT
*
67908968 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATT-T
* * * *
67909022 AGTAATTCTACCCTATAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATT-T
* * *
67909076 GGTAATTCTACCCTATAGCGGTATTTTGGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* ** * * * *
67909129 CGGTAATTTTACCCTACAGTAGTATTCCGGTAATTCTATCCTACAAGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATT-T
* ** *
67909184 GGTAATTCTACCCTACAAGGGTA-TTCTAATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCCTACAGGGGTA-TTT
* * * *
67909238 GGTAATTCTACCTTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
67909291 CGGTAATT
1 -GGTAATT
67909299 TTGTAAATCG
Statistics
Matches: 279, Mismatches: 44, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
53 23 0.08
54 251 0.90
55 5 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (53 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:67909039 original size:81 final size:80
Alignment explanation
Indices: 67908933--67909298 Score: 430
Period size: 81 Copynumber: 4.5 Consensus size: 80
67908923 TACCCCACAA
* * * *
67908933 GGTA-TCTCGGTAATTCCACACTATAGGGGTAATTTGGTAATTCTACCCTACAGGGGTATTTCGG
1 GGTATTCT-GGTAATTCTACCCTACAGGGGT-ATTTGGTAATTCTACCCTACAGGGGTATTCCGG
67908997 TAATTCTACCCTATAGG
64 TAATTCTACCCTATAGG
* * *
67909014 GGTATTCTAGTAATTCTACCCTATAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGGT
1 GGTATTCTGGTAATTCTACCCTACAGGGGTATT-TGGTAATTCTACCCTACAGGGGTATTCCGGT
*
67909079 AATTCTACCCTATAGC
65 AATTCTACCCTATAGG
* * **
67909095 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTACAGTAGTATTCCGGT
1 GGTATTCTGGTAATTCTACCCTACAGGGGTATTT-GGTAATTCTACCCTACAGGGGTATTCCGGT
* * *
67909160 AATTCTATCCTACAAG
65 AATTCTACCCTATAGG
* * ** * **
67909176 GGTATTCCGGTAATTCTACCCTACAAGGGTATTCTAATAATTCTACCCTATAGGGGTATTTTGGT
1 GGTATTCTGGTAATTCTACCCTACAGGGGTATT-TGGTAATTCTACCCTACAGGGGTATTCCGGT
*
67909241 AATTCTACCTTATAGG
65 AATTCTACCCTATAGG
* *
67909257 GGTATT-TCGGTATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GGTATTCT-GGTAATTCTACCCTACAGGGGTATTT-GGTAATT
67909299 TTGTAAATCG
Statistics
Matches: 243, Mismatches: 36, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
80 4 0.02
81 235 0.97
82 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (80 bp):
GGTATTCTGGTAATTCTACCCTACAGGGGTATTTGGTAATTCTACCCTACAGGGGTATTCCGGTA
ATTCTACCCTATAGG
Found at i:67909312 original size:27 final size:27
Alignment explanation
Indices: 67909280--67909650 Score: 316
Period size: 27 Copynumber: 13.7 Consensus size: 27
67909270 TTCTACCCTA
* **
67909280 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * * **
67909307 CGAGGGTAAAATGATAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
67909334 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** **
67909361 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
67909388 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
67909415 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
67909441 CTAAGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
67909469 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
67909495 CAAAGGGTATTTTAGTAATTTTACAACC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
67909523 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
67909550 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
67909576 CTAGGGGTATTTTGGTGATTTTATAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
67909604 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
67909631 CAGGGGTGTTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
67909651 GGTACACTAA
Statistics
Matches: 282, Mismatches: 56, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.01
27 276 0.98
28 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:67909575 original size:108 final size:108
Alignment explanation
Indices: 67909390--67909650 Score: 423
Period size: 108 Copynumber: 2.4 Consensus size: 108
67909380 TTACAGGTCG
* * * *
67909390 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
67909455 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
66 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
* **
67909498 AGGGTATTTTAGTAATTTTACAACCCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
* * *
67909563 GTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
66 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
*
67909606 AGGGTATTTTAGTAATTTTACAAACCAGGGGTGTTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
67909651 GGTACACTAA
Statistics
Matches: 141, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 141 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (108 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
Found at i:67910629 original size:81 final size:81
Alignment explanation
Indices: 67910485--67910764 Score: 235
Period size: 81 Copynumber: 3.4 Consensus size: 81
67910475 ATTCAGGGTG
** * * * * * * *
67910485 TTACAGAAATACCCCTGATTTGTAAAACTACCGAAATA-CCCTCGACCTGTAAATTTACCGAAAT
1 TTACAGAAATACCATTGATTTGTAAAATTACCAAAATACCCCTCAATCTGAAAAATTACAGAAAT
* *
67910549 ACCCTCGACTTGTAAAA
66 ACCCTTGATTTG-AAAA
* * *
67910566 TTACCGAAATACCATTGATTTGTAAAATTACCAAAATACCCCT-AATCTGGAAAATTACTGAAAT
1 TTACAGAAATACCATTGATTTGTAAAATTACCAAAATACCCCTCAATCTGAAAAATTACAGAAAT
*
67910630 ACCCTTAATTTAGAAAA
66 ACCCTTGATTT-GAAAA
** * * * * *
67910647 TTACAGAAATACCATTGATTTACAAAATTA-CAGAAATACCCTTGACTTTCAAAAATTACAGAAA
1 TTACAGAAATACCATTGATTTGTAAAATTACCA-AAATACCCCTCAATCTGAAAAATTACAGAAA
* *
67910711 TACCATTGGTTTGAAAAA
65 TACCCTTGATTTG-AAAA
* * * *
67910729 TTACCA-AAATACCCTTGGTTTGTAGATTTACCAAAA
1 TTA-CAGAAATACCATTGATTTGTAAAATTACCAAAA
67910765 CACCATTGTA
Statistics
Matches: 161, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
80 2 0.01
81 98 0.61
82 57 0.35
83 4 0.02
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (81 bp):
TTACAGAAATACCATTGATTTGTAAAATTACCAAAATACCCCTCAATCTGAAAAATTACAGAAAT
ACCCTTGATTTGAAAA
Found at i:67910746 original size:27 final size:27
Alignment explanation
Indices: 67910491--67910764 Score: 180
Period size: 27 Copynumber: 10.1 Consensus size: 27
67910481 GGTGTTACAG
* * * *
67910491 AAATACCCCTGATTTGTAAAACTACCG
1 AAATACCCTTGATTTGAAAAATTACCA
* ** * * *
67910518 AAATACCCTCGACCTGTAAATTTACCG
1 AAATACCCTTGATTTGAAAAATTACCA
* * * *
67910545 AAATACCCTCGACTTGTAAAATTACCG
1 AAATACCCTTGATTTGAAAAATTACCA
* *
67910572 AAATACCATTGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGAAAAATTACCA
* * * * **
67910599 AAATACCCCTAATCTGGAAAATTACTG
1 AAATACCCTTGATTTGAAAAATTACCA
*
67910626 AAATACCCTTAATTT-AGAAAATTA-CA
1 AAATACCCTTGATTTGA-AAAATTACCA
*
67910652 GAAATACCATTGATTT-ACAAAATTA-CA
1 -AAATACCCTTGATTTGA-AAAATTACCA
*
67910679 GAAATACCCTTGACTTTCAAAAATTA-CA
1 -AAATACCCTTGA-TTTGAAAAATTACCA
* *
67910707 GAAATACCATTGGTTTGAAAAATTACCA
1 -AAATACCCTTGATTTGAAAAATTACCA
* * * *
67910735 AAATACCCTTGGTTTGTAGATTTACCA
1 AAATACCCTTGATTTGAAAAATTACCA
67910762 AAA
1 AAA
67910765 CACCATTGTA
Statistics
Matches: 207, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
27 181 0.87
28 25 0.12
29 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATACCCTTGATTTGAAAAATTACCA
Found at i:67911049 original size:41 final size:41
Alignment explanation
Indices: 67911004--67911087 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
67910994 GGAGGAAGAA
67911004 ATTGAGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
* * * *
67911045 ATTGAGGATCGTATGGTTGCTTGATGATTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
67911086 AT
1 AT
67911088 GGTTTTTAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
Found at i:67911279 original size:22 final size:22
Alignment explanation
Indices: 67911227--67911291 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
67911217 GGCAATTATT
*
67911227 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
67911249 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
67911271 CTGATTATGGCTGTATGCCAA
1 CTGATTATGGCTCTGTGCCAA
67911292 AAGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:67923685 original size:28 final size:28
Alignment explanation
Indices: 67923653--67923722 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
67923643 AATGAGATTG
*
67923653 GCACTAAGTGTGCGAGTTT-AATTTTATA
1 GCACTAAGTGTGCGAGTTTGAATATTA-A
*
67923681 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
67923709 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67923723 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 34 0.87
29 5 0.13
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:67929645 original size:16 final size:15
Alignment explanation
Indices: 67929624--67929671 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
67929614 TATGTGAATA
67929624 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
67929640 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
67929655 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
67929671 A
1 A
67929672 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:67929647 original size:24 final size:24
Alignment explanation
Indices: 67929620--67929675 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
67929610 TAATTATGTG
*
67929620 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
67929644 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
67929668 AATAATAA
1 AATAATAA
67929676 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:67929654 original size:8 final size:8
Alignment explanation
Indices: 67929620--67929671 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
67929610 TAATTATGTG
*
67929620 AATAATAA
1 AATATTAA
67929628 AATATATAA
1 AATAT-TAA
67929637 AATA-TAA
1 AATATTAA
67929644 AATATTAA
1 AATATTAA
*
67929652 AATATCAA
1 AATATTAA
*
67929660 AATATTAG
1 AATATTAA
67929668 AATA
1 AATA
67929672 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:67929697 original size:44 final size:43
Alignment explanation
Indices: 67929649--67929790 Score: 159
Period size: 43 Copynumber: 3.3 Consensus size: 43
67929639 TATAAAATAT
*
67929649 TAAAATATCAAAATATTAGAATAATAATAATTAATATTGACAAA
1 TAAAAAAT-AAAATATTAGAATAATAATAATTAATATTGACAAA
* * * *
67929693 TAAAAAATAAAATA-GA-AATAA-AA-AATGTACATAAT-ATATA
1 TAAAAAATAAAATATTAGAATAATAATAAT-TA-ATATTGACAAA
*
67929733 TAAAATATCAAAATATTAGAATAATAATAATTAATATTGACAAA
1 TAAAAAAT-AAAATATTAGAATAATAATAATTAATATTGACAAA
67929777 TAAAAAATAAAATA
1 TAAAAAATAAAATA
67929791 GAAATAAAAA
Statistics
Matches: 79, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
39 3 0.04
40 14 0.18
41 15 0.19
42 2 0.03
43 21 0.27
44 21 0.27
45 3 0.04
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (43 bp):
TAAAAAATAAAATATTAGAATAATAATAATTAATATTGACAAA
Found at i:67929701 original size:38 final size:38
Alignment explanation
Indices: 67929658--67929785 Score: 116
Period size: 38 Copynumber: 3.2 Consensus size: 38
67929648 TTAAAATATC
67929658 AAAATATTAGAATAATAATAATTAATATTGACAAATAA
1 AAAATATTAGAATAATAATAATTAATATTGACAAATAA
* * * *
67929696 AAAATAAAATAGAAATAA-AA-AATGTACATAATATATATAAAATATC
1 AAAAT--ATTAG-AATAATAATAAT-TA-AT-AT-T-GA-CAAATA-A
67929742 AAAATATTAGAATAATAATAATTAATATTGACAAATAA
1 AAAATATTAGAATAATAATAATTAATATTGACAAATAA
67929780 AAAATA
1 AAAATA
67929786 AAATAGAAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 24
0.69 0.08 0.24
Matches are distributed among these distances:
38 11 0.16
39 8 0.11
40 9 0.13
41 8 0.11
42 4 0.06
43 8 0.11
44 9 0.13
45 8 0.11
46 5 0.07
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (38 bp):
AAAATATTAGAATAATAATAATTAATATTGACAAATAA
Found at i:67929745 original size:84 final size:85
Alignment explanation
Indices: 67929640--67929820 Score: 330
Period size: 84 Copynumber: 2.1 Consensus size: 85
67929630 TATATAAAAT
*
67929640 ATAAAATAT-TAAAATATCAAAATATTAGAATAATAATAATTAATATTGACAAATAAAAAATAAA
1 ATAATATATATAAAATATCAAAATATTAGAATAATAATAATTAATATTGACAAATAAAAAATAAA
67929704 ATAGAAAT-AAAAAATGTAC
66 ATAGAAATAAAAAAATGTAC
67929723 ATAATATATATAAAATATCAAAATATTAGAATAATAATAATTAATATTGACAAATAAAAAATAAA
1 ATAATATATATAAAATATCAAAATATTAGAATAATAATAATTAATATTGACAAATAAAAAATAAA
67929788 ATAGAAATAAAAAAAATGTAC
66 ATAGAAAT-AAAAAAATGTAC
67929809 ATAATATATATA
1 ATAATATATATA
67929821 TTAGAAATAA
Statistics
Matches: 94, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
83 8 0.09
84 63 0.67
86 23 0.24
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (85 bp):
ATAATATATATAAAATATCAAAATATTAGAATAATAATAATTAATATTGACAAATAAAAAATAAA
ATAGAAATAAAAAAATGTAC
Found at i:67929975 original size:22 final size:24
Alignment explanation
Indices: 67929912--67929976 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
67929902 CGTGATAATA
*
67929912 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
67929937 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
67929960 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
67929977 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:67930023 original size:23 final size:23
Alignment explanation
Indices: 67929997--67930124 Score: 79
Period size: 23 Copynumber: 5.6 Consensus size: 23
67929987 AGAAAAATAT
*
67929997 ATATATAAATAATATAATTAAAG
1 ATATATACATAATATAATTAAAG
* * *
67930020 ATATATACATAAAAT-AGTATAAT
1 ATATATACATAATATAATTA-AAG
* *
67930043 ATATATACGTAATATAGAATTTAA-
1 ATATATACATAATAT--AATTAAAG
*
67930067 A-ATATACCTAATAT-ATTAAAAG
1 ATATATACATAATATAATT-AAAG
* *
67930089 A-ATATATATAATATAATATTAAG
1 ATATATACATAATATAAT-TAAAG
*
67930112 AAATATA-ATAATA
1 ATATATACATAATA
67930125 ACAAAAAAAG
Statistics
Matches: 83, Mismatches: 13, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
20 3 0.04
21 2 0.02
22 15 0.18
23 52 0.63
24 7 0.08
25 2 0.02
26 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (23 bp):
ATATATACATAATATAATTAAAG
Found at i:67930657 original size:30 final size:30
Alignment explanation
Indices: 67930621--67930769 Score: 138
Period size: 30 Copynumber: 4.7 Consensus size: 30
67930611 CAAGTGGTGG
*
67930621 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
1 TGGAGCAAGTGTGGCTAGTGGAGTAGGTAA
* * **
67930651 TGGAGCAAGTGTGGCTAGTGGATTTGGTGG
1 TGGAGCAAGTGTGGCTAGTGGAGTAGGTAA
* **
67930681 TGGA-AAAGGTGTGGCTAGTGGAGGGTACAAGTGGTGG
1 TGGAGCAA-GTGTGGCTAGTGGA--GT---A--GGTAA
*
67930718 TGGAGCAAGTGTGGTTAGTGGAGTAGGTAA
1 TGGAGCAAGTGTGGCTAGTGGAGTAGGTAA
67930748 TGGAGCAAGTGTGGCTAGTGGA
1 TGGAGCAAGTGTGGCTAGTGGA
67930770 TTTGGTGGTG
Statistics
Matches: 97, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
29 2 0.02
30 67 0.69
32 2 0.02
35 2 0.02
37 22 0.23
38 2 0.02
ACGTcount: A:0.23, C:0.05, G:0.46, T:0.26
Consensus pattern (30 bp):
TGGAGCAAGTGTGGCTAGTGGAGTAGGTAA
Found at i:67930773 original size:97 final size:97
Alignment explanation
Indices: 67930607--67930800 Score: 379
Period size: 97 Copynumber: 2.0 Consensus size: 97
67930597 TTCATTTGTA
67930607 GGTACAAGTGGTGGTGGAGCAAGTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGG
1 GGTACAAGTGGTGGTGGAGCAAGTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGG
*
67930672 ATTTGGTGGTGGAAAAGGTGTGGCTAGTGGAG
66 ATTTGGTGGTGGAAAAGGAGTGGCTAGTGGAG
67930704 GGTACAAGTGGTGGTGGAGCAAGTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGG
1 GGTACAAGTGGTGGTGGAGCAAGTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGG
67930769 ATTTGGTGGTGGAAAAGGAGTGGCTAGTGGAG
66 ATTTGGTGGTGGAAAAGGAGTGGCTAGTGGAG
67930801 TTGGTGGTGG
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 96 1.00
ACGTcount: A:0.23, C:0.05, G:0.46, T:0.25
Consensus pattern (97 bp):
GGTACAAGTGGTGGTGGAGCAAGTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGG
ATTTGGTGGTGGAAAAGGAGTGGCTAGTGGAG
Found at i:67930779 original size:60 final size:60
Alignment explanation
Indices: 67930728--67930846 Score: 159
Period size: 60 Copynumber: 2.0 Consensus size: 60
67930718 TGGAGCAAGT
* * * *
67930728 GTGGTTAGTGGAGTAGGTAATGGAGCAA-GTGTGGCTAGTGGATTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTAGGTAATGGA-AAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
* **
67930788 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 GTGGCTAGTGGAGTAGGTAATGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
67930847 CTAAGATTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
59 2 0.04
60 49 0.96
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.25
Consensus pattern (60 bp):
GTGGCTAGTGGAGTAGGTAATGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:67930792 original size:30 final size:30
Alignment explanation
Indices: 67930758--67930846 Score: 169
Period size: 30 Copynumber: 3.0 Consensus size: 30
67930748 TGGAGCAAGT
*
67930758 GTGGCTAGTGGATTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
67930788 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
67930818 GTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGG
67930847 CTAAGATTTA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:67931591 original size:131 final size:131
Alignment explanation
Indices: 67931345--67931739 Score: 585
Period size: 131 Copynumber: 3.0 Consensus size: 131
67931335 AATTTAGAGA
* * * * * *
67931345 ACATGAGTGAAATTCTAAAGGAATATTCGGTTATTTCGAACAAACAGGAGATCGCAACCCAGCA-
1 ACATGAGTGAAATTCCAAAGGAATATTTGATTGTTTTGAACAAACAGGAAATCGCAACCCAGCAC
67931409 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTAAA
66 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTAAA
67931474 T
131 T
*
67931475 ACATGAGTGAAATTCCAAAGGAATATTTGATTGTTTTGAACAAACAGGAAATCGCAACCTAGCAC
1 ACATGAGTGAAATTCCAAAGGAATATTTGATTGTTTTGAACAAACAGGAAATCGCAACCCAGCAC
*
67931540 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTACCTTCATTTTGAAGAGTTTTTAAA
66 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTAAA
*
67931605 G
131 T
* * *
67931606 ACATGAGTGATATTCCAAAGGAATATTTGATTGTTTTGAACGAACGGGAAATCGCAACCCAGCAC
1 ACATGAGTGAAATTCCAAAGGAATATTTGATTGTTTTGAACAAACAGGAAATCGCAACCCAGCAC
* * ** * * *
67931671 GATAGGGAACGACGATTTCCTGAATTGCCAAACATCGAACATTTCCTTCGTTTTTAAGAATTTTT
66 GATAGGG--C-ACGATTCCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTT
67931736 AAAT
128 AAAT
67931740 GAATAATTAT
Statistics
Matches: 239, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
130 57 0.24
131 132 0.55
133 1 0.00
134 49 0.21
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (131 bp):
ACATGAGTGAAATTCCAAAGGAATATTTGATTGTTTTGAACAAACAGGAAATCGCAACCCAGCAC
GATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTAAA
T
Found at i:67935714 original size:64 final size:64
Alignment explanation
Indices: 67935516--67935761 Score: 289
Period size: 64 Copynumber: 3.8 Consensus size: 64
67935506 CATAATTTTG
* * *
67935516 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAC-TTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATTTATCTCGTA
* * * * * * * *
67935579 GCTCTTTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATTTATCTCG
67935644 TA
63 TA
* * * *
67935646 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCCCGTA
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATTTATCTCGTA
* *
67935710 GCTCTCTTGTCTACATAGTGTACACTTAGTATCACCCATGCGACCTAGCTAC
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTAC
67935762 CTCGTAATGT
Statistics
Matches: 154, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
63 17 0.11
64 85 0.55
66 23 0.15
67 29 0.19
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATTTATCTCGTA
Found at i:67936328 original size:30 final size:30
Alignment explanation
Indices: 67936294--67936354 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67936284 TCCTTAACTC
67936294 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * * *
67936324 AAACTTTTTCATATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
67936354 A
1 A
67936355 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.43
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:67937489 original size:14 final size:12
Alignment explanation
Indices: 67937455--67937490 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
67937445 TAAAATAGTA
67937455 AATAATATATAT
1 AATAATATATAT
67937467 AATAATATATAT
1 AATAATATATAT
67937479 AAT-ATAT-TAT
1 AATAATATATAT
67937489 AA
1 AA
67937491 CATAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 5 0.21
11 4 0.17
12 15 0.62
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
AATAATATATAT
Found at i:67937975 original size:56 final size:56
Alignment explanation
Indices: 67937886--67938027 Score: 221
Period size: 56 Copynumber: 2.5 Consensus size: 56
67937876 CATGACATAG
*
67937886 GATTCCGATATGTGATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
1 GATTCCGATATATG-TGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
*
67937943 GATTCCGATATATGTGTGCGAGTAAGATCACGTTTAATACGTTGGCATCGATATGT
1 GATTCCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
* ** *
67937999 GACTCTAATATATGTGTGTGAGTAAGACC
1 GATTCCGATATATGTGTGCGAGTAAGACC
67938028 CTGTCTGGGA
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
56 65 0.83
57 13 0.17
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (56 bp):
GATTCCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
Found at i:67939561 original size:15 final size:15
Alignment explanation
Indices: 67939541--67939570 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67939531 ATATATATAC
67939541 ATATATGTGAAACAT
1 ATATATGTGAAACAT
67939556 ATATATGTGAAACAT
1 ATATATGTGAAACAT
67939571 GATTGATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (15 bp):
ATATATGTGAAACAT
Found at i:67943913 original size:37 final size:38
Alignment explanation
Indices: 67943867--67943939 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 38
67943857 TGTTTAGTTA
*
67943867 AGCTCCATTCAGTATAATA-GTATGATTT-GCTCGATTG
1 AGCTCCATTCAATATAA-AGGTATGATTTGGCTCGATTG
* *
67943904 AGCTTCATTCAATATAAAGGTATGGTTTGGCTCGAT
1 AGCTCCATTCAATATAAAGGTATGATTTGGCTCGAT
67943940 AGTGCGTACT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 1 0.03
37 23 0.74
38 7 0.23
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (38 bp):
AGCTCCATTCAATATAAAGGTATGATTTGGCTCGATTG
Found at i:67950704 original size:25 final size:25
Alignment explanation
Indices: 67950676--67950754 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
67950666 CTAATGGCCG
67950676 ATGTGATGAATGTGAAAATGTATAT
1 ATGTGATGAATGTGAAAATGTATAT
** ***
67950701 ATGTGAT-AA-G-GCCGAATGGCCA-
1 ATGTGATGAATGTG-AAAATGTATAT
*
67950723 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAATGTATAT
67950748 ATGTGAT
1 ATGTGAT
67950755 AGGGCCGAGT
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 7 0.18
25 15 0.39
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAATGTATAT
Found at i:67950704 original size:47 final size:47
Alignment explanation
Indices: 67950637--67950804 Score: 264
Period size: 47 Copynumber: 3.6 Consensus size: 47
67950627 TATTTGAATA
* *
67950637 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
67950684 AATGTGAAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
67950731 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
67950778 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67950805 TCCCGAAGGG
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:67969275 original size:26 final size:26
Alignment explanation
Indices: 67969194--67969278 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
67969184 GTGAGAACAC
*
67969194 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCTACT
* ** **
67969220 ATGTGT-TTAAGACAGTTTTAGG-TCAC-
1 ATGTGTAGTACTA-AG-TGCAGGCT-ACT
67969246 ATGTGTAGTACTAAGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCTACT
67969272 ATGTGTA
1 ATGTGTA
67969279 CCAGATTGTT
Statistics
Matches: 42, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
25 9 0.21
26 24 0.57
27 9 0.21
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (26 bp):
ATGTGTAGTACTAAGTGCAGGCTACT
Found at i:67969310 original size:50 final size:50
Alignment explanation
Indices: 67969191--67969484 Score: 326
Period size: 50 Copynumber: 5.8 Consensus size: 50
67969181 GTTGTGAGAA
* *
67969191 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGTTAGGT
67969243 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** * * * * *
67969293 TGCATGTGTAGAACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TT-AGGT
* * * * * *
67969344 CACGTGTGTAGTACTATA-TCCAGGCTACTACGTGTATCGGATGGTTAGGT
1 CACATGTGTAGTACTA-AGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
67969394 CACTTGTGTAGTACTAATTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
67969444 CACATGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
67969485 GAGCTTCGGT
Statistics
Matches: 205, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
48 3 0.01
49 5 0.02
50 127 0.62
51 35 0.17
52 35 0.17
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:67969379 original size:101 final size:101
Alignment explanation
Indices: 67969242--67969484 Score: 276
Period size: 101 Copynumber: 2.4 Consensus size: 101
67969232 CAGTTTTAGG
* * * **
67969242 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTTGCATGTGTAGAAC
1 TCACATGTGTAGTACTAAGTCCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGAAC
67969307 TAAGTGCAGGCTACTATGCGTACCTGATAGCTTCAA
66 TAAGTGCAGGCTACTATGCGTACCTGATAGCTTCAA
* * * * *
67969343 TCACGTGTGTAGTACTATA-TCCAGGCTACTACGTGTATCGGATGGTTAGGTCACTTGTGTAGTA
1 TCACATGTGTAGTACTA-AGTCCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGAA
* * * * *
67969407 CTAATTGCAGGCTACTATGTGTACCAGATTG-TT-AGG
65 CTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCA-A
* * * *
67969443 TCACATGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGA
1 TCACATGTGTAGTACTAAGTCCAGGCTACTACGTGTACCAGA
67969485 GAGCTTCGGT
Statistics
Matches: 117, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
99 2 0.02
100 35 0.30
101 79 0.68
102 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTCCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGAAC
TAAGTGCAGGCTACTATGCGTACCTGATAGCTTCAA
Found at i:67969519 original size:151 final size:151
Alignment explanation
Indices: 67969237--67969519 Score: 406
Period size: 151 Copynumber: 1.9 Consensus size: 151
67969227 TAAGACAGTT
**
67969237 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTTGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACATGTGT
* * ** * * *
67969302 AGAACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCAATCACGTGTGTAGTACTATATCCAG
66 AGAACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTCAATCACAAGGGTAGTAATATATACAG
67969367 GCTACTACGTGTATCGGATGG
131 GCTACTACGTGTATCGGATGG
* *
67969388 TTAGGTCACTTGTGTAGTACTAATTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACATGTGT
** * * *
67969453 A-ATACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTCGGTTACAAGGGTGGTAATATGTACA
66 AGA-ACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTCAATCACAAGGGTAGTAATATATACA
67969517 GGC
130 GGC
67969520 CACCAGGTAT
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
150 1 0.01
151 114 0.99
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (151 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACATGTGT
AGAACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTCAATCACAAGGGTAGTAATATATACAG
GCTACTACGTGTATCGGATGG
Found at i:67972254 original size:30 final size:30
Alignment explanation
Indices: 67972208--67972267 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
67972198 TTCCCGAGCC
* *
67972208 TAGGGGTAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
67972238 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
67972268 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:67979740 original size:30 final size:30
Alignment explanation
Indices: 67979704--67979764 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
67979694 TTCCCGAGCC
*
67979704 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
67979734 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
67979764 T
1 T
67979765 GTATTAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:67985732 original size:43 final size:43
Alignment explanation
Indices: 67985589--67985737 Score: 123
Period size: 43 Copynumber: 3.5 Consensus size: 43
67985579 TCTCAGATAT
** * *
67985589 CATGTAAGACCGTGTCTAGGACACAGGCCTCGAT-TTGAGATTTA
1 CATGTAAGACCACGTCTGGGACACAGGCATCGATATTGA-A-TTA
* * *
67985633 CGTGTAAGACCA--T-TGGGACATAGGCATCG-TATTTG-ATTT
1 CATGTAAGACCACGTCTGGGACACAGGCATCGATA-TTGAATTA
* *
67985672 CATGTAAGACC-CTGTCTGGGACAGAGGCATCGATACTGAATTA
1 CATGTAAGACCAC-GTCTGGGACACAGGCATCGATATTGAATTA
*
67985715 CATGTAAGACCACGTCTGAGACA
1 CATGTAAGACCACGTCTGGGACA
67985738 TCGGCATTGT
Statistics
Matches: 85, Mismatches: 11, Indels: 19
0.74 0.10 0.17
Matches are distributed among these distances:
39 12 0.14
40 2 0.02
41 14 0.16
42 21 0.25
43 25 0.29
44 11 0.13
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACACAGGCATCGATATTGAATTA
Found at i:67989057 original size:183 final size:183
Alignment explanation
Indices: 67988749--67989124 Score: 734
Period size: 183 Copynumber: 2.1 Consensus size: 183
67988739 GGGGTAAAAG
*
67988749 ATGACACAGAAAGGAGTGTGGTATAGTGGCAAGGTGGCGCCACTCAAGGGACAAGGAAGTGACGC
1 ATGACACAAAAAGGAGTGTGGTATAGTGGCAAGGTGGCGCCACTCAAGGGACAAGGAAGTGACGC
67988814 CATAGATGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTTGTAATATATTTTGGTTTTTCTTT
66 CATAGATGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTTGTAATATATTTTGGTTTTTCTTT
67988879 TCAATAAATCTGGAAGCAAGTAGGTGCGCTTTAAAGTTTAATGTATTGGATTT
131 TCAATAAATCTGGAAGCAAGTAGGTGCGCTTTAAAGTTTAATGTATTGGATTT
*
67988932 ATGACACAAAAAGGAGTGTGGTGTAGTGGCAAGGTGGCGCCACTCAAGGGACAAGGAAGTGACGC
1 ATGACACAAAAAGGAGTGTGGTATAGTGGCAAGGTGGCGCCACTCAAGGGACAAGGAAGTGACGC
67988997 CATAGATGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTTGTAATATATTTTGGTTTTTCTTT
66 CATAGATGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTTGTAATATATTTTGGTTTTTCTTT
67989062 TCAATAAATCTGGAAGCAAGTAGGTGCGCTTTAAAGTTTAATGTATTGGATTT
131 TCAATAAATCTGGAAGCAAGTAGGTGCGCTTTAAAGTTTAATGTATTGGATTT
67989115 ATGACACAAA
1 ATGACACAAA
67989125 TGAGTTGATG
Statistics
Matches: 191, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
183 191 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (183 bp):
ATGACACAAAAAGGAGTGTGGTATAGTGGCAAGGTGGCGCCACTCAAGGGACAAGGAAGTGACGC
CATAGATGAAGCAAGGGGTCCAAGGTTCAAGTCTTGGCTCTTGTAATATATTTTGGTTTTTCTTT
TCAATAAATCTGGAAGCAAGTAGGTGCGCTTTAAAGTTTAATGTATTGGATTT
Found at i:67990372 original size:27 final size:27
Alignment explanation
Indices: 67990332--67990391 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
67990322 ACATATATAT
* *
67990332 ATATCT-TTTCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
67990358 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
67990385 ATATCTG
1 ATATCTG
67990392 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:67990413 original size:100 final size:100
Alignment explanation
Indices: 67990240--67990507 Score: 493
Period size: 100 Copynumber: 2.7 Consensus size: 100
67990230 GTCGCTGCAA
* *
67990240 TCTGGTGGCCTCGCTACATATATCTGT-TCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTG
1 TCTGGTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTG
67990304 CAATCTGGTGGCTTCGCCACATATATATATATCTTT
65 CAATCTGGTGGCTTCGCCACATATATATATATCTTT
67990340 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
67990405 AATCTGGTGGCTTCGCCACATATATATATATCTTT
66 AATCTGGTGGCTTCGCCACATATATATATATCTTT
*
67990440 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATTTGGCAGCCTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
67990505 AAT
66 AAT
67990508 TTCTATGGTG
Statistics
Matches: 164, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
99 8 0.05
100 156 0.95
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (100 bp):
TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
AATCTGGTGGCTTCGCCACATATATATATATCTTT
Found at i:67998745 original size:46 final size:46
Alignment explanation
Indices: 67998678--67998769 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
67998668 TGTTACAGAA
67998678 CCCCTTAGGCAAAAGTGTCTTGGTTGATAAAGTCTACAAGAATTGC
1 CCCCTTAGGCAAAAGTGTCTTGGTTGATAAAGTCTACAAGAATTGC
67998724 CCCCTTAGGCAAAAGTGTCTTGGTTGATAAAGTCTACAAGAATTGC
1 CCCCTTAGGCAAAAGTGTCTTGGTTGATAAAGTCTACAAGAATTGC
67998770 TTATTATTGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (46 bp):
CCCCTTAGGCAAAAGTGTCTTGGTTGATAAAGTCTACAAGAATTGC
Found at i:68000469 original size:26 final size:26
Alignment explanation
Indices: 68000439--68000493 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
68000429 TGAATGCCCA
68000439 TTTAGTTCTGTCTAATGATATCTTGG
1 TTTAGTTCTGTCTAATGATATCTTGG
68000465 TTTAGTTCTGTCTAATGATATCTTGG
1 TTTAGTTCTGTCTAATGATATCTTGG
68000491 TTT
1 TTT
68000494 GTGCCGAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.11, G:0.18, T:0.53
Consensus pattern (26 bp):
TTTAGTTCTGTCTAATGATATCTTGG
Found at i:68000505 original size:26 final size:26
Alignment explanation
Indices: 68000450--68000505 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
68000440 TTAGTTCTGT
* * *
68000450 CTAATGATATCTTGGTTTAGTTCTGT
1 CTAATGATATCTTGGTTTAGTGCCGA
68000476 CTAATGATATCTTGGTTT-GTGCCGAA
1 CTAATGATATCTTGGTTTAGTGCCG-A
68000502 CTAA
1 CTAA
68000506 AAGCAAAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (26 bp):
CTAATGATATCTTGGTTTAGTGCCGA
Found at i:68003179 original size:42 final size:43
Alignment explanation
Indices: 68003061--68003195 Score: 148
Period size: 42 Copynumber: 3.1 Consensus size: 43
68003051 GGAATGTGAA
* * *
68003061 CATCGATCTGAGATATCGTGTAAGACTGTGTTTGGGACACAGG
1 CATCGATCTGAGATTTCGTGTAAGACCGTGTCTGGGACACAGG
* * * * *
68003104 CTTCGATTTGAGATTTACTTGTAAGACCATGTCTGGGACATAGG
1 CATCGATCTGAGATTT-CGTGTAAGACCGTGTCTGGGACACAGG
* *
68003148 CATCGCATCT-A-ATTTCGTGTAAGACCGTGTCTGAGACAGAGG
1 CATCG-ATCTGAGATTTCGTGTAAGACCGTGTCTGGGACACAGG
68003190 CATCGA
1 CATCGA
68003196 AACTGAATTA
Statistics
Matches: 76, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 28 0.37
43 17 0.22
44 27 0.36
45 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
CATCGATCTGAGATTTCGTGTAAGACCGTGTCTGGGACACAGG
Found at i:68003223 original size:43 final size:42
Alignment explanation
Indices: 68003118--68003223 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
68003108 GATTTGAGAT
* * * * *
68003118 TTACTTGTAAGACCATGTCTGGGACATAGGCATCGCATCTAA
1 TTACATGTAAGACCATGTCTGAGACAGAGGCATCGAAACTAA
* * *
68003160 TTTCGTGTAAGACCGTGTCTGAGACAGAGGCATCGAAACTGAA
1 TTACATGTAAGACCATGTCTGAGACAGAGGCATCGAAACT-AA
*
68003203 TTACATGTAAGACCACGTCTG
1 TTACATGTAAGACCATGTCTG
68003224 GAACGTCGGC
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 33 0.63
43 19 0.37
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGAGACAGAGGCATCGAAACTAA
Found at i:68007400 original size:16 final size:16
Alignment explanation
Indices: 68007377--68007430 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
68007367 TATTTGGGGG
68007377 ATCAAATTGAGAAGTT
1 ATCAAATTGAGAAGTT
*
68007393 ACCAAATTGAGAAGTT
1 ATCAAATTGAGAAGTT
* *
68007409 ATCAATTTTAGAAGTT
1 ATCAAATTGAGAAGTT
68007425 ATCAAA
1 ATCAAA
68007431 GTATGGAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.31
Consensus pattern (16 bp):
ATCAAATTGAGAAGTT
Found at i:68012296 original size:25 final size:25
Alignment explanation
Indices: 68012258--68012307 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
68012248 TGTGTAAGGT
68012258 TTGAGGTCAAATTGAATGAATGTGC
1 TTGAGGTCAAATTGAATGAATGTGC
* *
68012283 TTGAGGTCAGATTGAATGGATGTGC
1 TTGAGGTCAAATTGAATGAATGTGC
68012308 CTTACATAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.28, C:0.08, G:0.32, T:0.32
Consensus pattern (25 bp):
TTGAGGTCAAATTGAATGAATGTGC
Found at i:68014138 original size:24 final size:24
Alignment explanation
Indices: 68014111--68014158 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
68014101 ACACATAAGT
68014111 GCCACATATACGTACGTAGCTAAA
1 GCCACATATACGTACGTAGCTAAA
68014135 GCCACATATACGTACGTAGCTAAA
1 GCCACATATACGTACGTAGCTAAA
68014159 ACACTCGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
GCCACATATACGTACGTAGCTAAA
Found at i:68016893 original size:39 final size:39
Alignment explanation
Indices: 68016850--68016965 Score: 151
Period size: 39 Copynumber: 3.0 Consensus size: 39
68016840 CCGTACATAT
* * *
68016850 TTCCAGCACGTAGCCTGCGGACCTTAAATATGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAATACGGATATAA
* * * *
68016889 TTCCAGCACATAGCCTGTGGGCCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAATACGGATATAA
* *
68016928 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAATACGGATATA
68016966 CATCACTGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAATACGGATATAA
Found at i:68021347 original size:53 final size:53
Alignment explanation
Indices: 68021152--68021406 Score: 250
Period size: 55 Copynumber: 4.8 Consensus size: 53
68021142 ATTAGGGTTT
* * *
68021152 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTACGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGT-AAGTTTATAAGGC
* * *
68021207 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TATAAGGC
* * *
68021262 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTTATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * ** *
68021315 AAGGATATCATGTAAGACAATGTCAAGACATGGCAACGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * * *
68021364 AAGGATACCACGTAAGACTATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
68021407 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
49 37 0.22
52 6 0.04
53 46 0.27
54 5 0.03
55 71 0.42
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
Found at i:68021358 original size:108 final size:110
Alignment explanation
Indices: 68021159--68021359 Score: 325
Period size: 108 Copynumber: 1.8 Consensus size: 110
68021149 TTTAAGGATA
* *
68021159 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTACGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGA
* **
68021224 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CAATGTCAAGACATGGCAACGATAAGTTACTATAAGGCAAAGGTC
*
68021269 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGT-GAGTTTATAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGA
*
68021332 CAATGTCAAGACATGGCAACGGTAAGTT
66 CAATGTCAAGACATGGCAACGATAAGTT
68021360 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 51 0.61
109 6 0.07
110 27 0.32
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGA
CAATGTCAAGACATGGCAACGATAAGTTACTATAAGGCAAAGGTC
Found at i:68025015 original size:40 final size:39
Alignment explanation
Indices: 68024971--68025201 Score: 105
Period size: 39 Copynumber: 5.9 Consensus size: 39
68024961 TCACCACCCA
*
68024971 AAAGCATGCAGGACTTTAAGACCAGATATAATACCAGCAC
1 AAAGCATGCAGGACTTT-AGACCAGATATAACACCAGCAC
* * * *
68025011 AAAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCAC
1 AAAGCATGCAGGACTTTAGACCAGATATAACACCAGCAC
* * * * * * *
68025050 GAATGCCTTCGGGGC-TTAG-CTCGGATATAACACCAACAC
1 -AAAGCATGCAGGACTTTAGAC-CAGATATAACACCAGCAC
* * * * *
68025089 GAATGCCTTCGGGAC-TTAG-CCTGGATATAACACCAGCAC
1 -AAAGCATGCAGGACTTTAGACC-AGATATAACACCAGCAC
* * * * *
68025128 GAATGCCTTCAGGAC-TTAGCCCGGATATAACACCAGCAC
1 -AAAGCATGCAGGACTTTAGACCAGATATAACACCAGCAC
* * * * * *
68025167 GGATGCCTTCAGGAC-TTAGCCCGGATATAACACCA
1 -AAAGCATGCAGGACTTTAGACCAGATATAACACCA
68025202 ACACGAATGC
Statistics
Matches: 174, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 144 0.83
40 28 0.16
ACGTcount: A:0.32, C:0.28, G:0.22, T:0.19
Consensus pattern (39 bp):
AAAGCATGCAGGACTTTAGACCAGATATAACACCAGCAC
Found at i:68025047 original size:39 final size:39
Alignment explanation
Indices: 68024995--68025240 Score: 359
Period size: 39 Copynumber: 6.3 Consensus size: 39
68024985 TTTAAGACCA
* * *
68024995 GATATAATACCAGCAC-AAAGCCTGCGGGACTTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCG
* *
68025034 GATATAACACCAGCACGAATGCCTTCGGGGCTTAGCTCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
* *
68025073 GATATAACACCAACACGAATGCCTTCGGGACTTAGCCTG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
*
68025112 GATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
* *
68025151 GATATAACACCAGCACGGATGCCTTCAGGACTTAGCCCG
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
* * *
68025190 GATATAACACCAACACGAATGCCTTTGGGACTTAGCCCA
1 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
68025229 GATATAACACCA
1 GATATAACACCA
68025241 TTATAAAGTC
Statistics
Matches: 188, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 177 0.94
40 11 0.06
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (39 bp):
GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCG
Found at i:68025354 original size:28 final size:28
Alignment explanation
Indices: 68025313--68025385 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
68025303 ATTTAATCAT
* *
68025313 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATCTCGCACACTAAGTGTCATTC
* * *
68025341 TTAATATCTCGCACATTAAGTGTCTTTC
1 TCAATATCTCGCACACTAAGTGTCATTC
* *
68025369 TCAATATTTCGTACACT
1 TCAATATCTCGCACACT
68025386 GAGTACCATA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (28 bp):
TCAATATCTCGCACACTAAGTGTCATTC
Found at i:68032588 original size:20 final size:20
Alignment explanation
Indices: 68032522--68032588 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
68032512 ATTTTAGTAA
* *
68032522 ACATGGTATGTATAATATGC
1 ACATGATATGTATGATATGC
* *
68032542 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
68032562 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68032582 ACATGAT
1 ACATGAT
68032589 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68032667 original size:25 final size:25
Alignment explanation
Indices: 68032639--68032718 Score: 126
Period size: 25 Copynumber: 3.2 Consensus size: 25
68032629 AGGAAGTGTA
68032639 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
68032664 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
68032688 AAAGGGCTTATGCCCCAGTTATATGAT
1 AAAGGGCTTATGCCCCAG-T-TATGAT
68032715 AAAG
1 AAAG
68032719 CAGTTATTCT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
24 18 0.36
25 24 0.48
26 4 0.08
27 4 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:68032696 original size:24 final size:24
Alignment explanation
Indices: 68032637--68032709 Score: 128
Period size: 24 Copynumber: 3.0 Consensus size: 24
68032627 GGAGGAAGTG
68032637 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
68032661 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
68032686 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
68032710 ATGATAAAGC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
24 23 0.50
25 23 0.50
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:68032938 original size:31 final size:31
Alignment explanation
Indices: 68032903--68032966 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
68032893 CATTTACATT
68032903 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
68032934 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68032965 AA
1 AA
68032967 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:68034744 original size:28 final size:28
Alignment explanation
Indices: 68034706--68034859 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
68034696 TAAATTGTAC
68034706 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
68034734 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
**
68034762 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* * *
68034790 AGCACTAGGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
68034818 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
68034845 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68034860 GACTTAATAT
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
27 24 0.20
28 95 0.80
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:68035186 original size:92 final size:92
Alignment explanation
Indices: 68035029--68035211 Score: 348
Period size: 92 Copynumber: 2.0 Consensus size: 92
68035019 ATTATAATTG
*
68035029 AAGTCACGTACATAAGATTTATTGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGACTGTAACGA
1 AAGTCACGTACATAAGATTTATTGTGGAATAGGTGAAAGGCCGTTTAGTTGTATGACTGTAACGA
68035094 AAATAAAATGATGTATGAAAATGCCTT
66 AAATAAAATGATGTATGAAAATGCCTT
*
68035121 AAGTCACGTACATAAGATTTATTGTGGAATAGGTGAAAGGCCGTTTAGTTGTATGATTGTAACGA
1 AAGTCACGTACATAAGATTTATTGTGGAATAGGTGAAAGGCCGTTTAGTTGTATGACTGTAACGA
68035186 AAATAAAATGATGTATGAAAATGCCT
66 AAATAAAATGATGTATGAAAATGCCT
68035212 CAAATATCCT
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 89 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (92 bp):
AAGTCACGTACATAAGATTTATTGTGGAATAGGTGAAAGGCCGTTTAGTTGTATGACTGTAACGA
AAATAAAATGATGTATGAAAATGCCTT
Found at i:68037433 original size:10 final size:10
Alignment explanation
Indices: 68037418--68037443 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
68037408 GTATTCGGTC
68037418 ACTTTGTGGA
1 ACTTTGTGGA
68037428 ACTTTGTGGA
1 ACTTTGTGGA
68037438 ACTTTG
1 ACTTTG
68037444 AGCCATCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.27, T:0.42
Consensus pattern (10 bp):
ACTTTGTGGA
Found at i:68039049 original size:22 final size:21
Alignment explanation
Indices: 68039016--68039057 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
68039006 TCAAACCTAC
68039016 ACAAGCATGCAAAATTTACACA
1 ACAAGCATGCAAAA-TTACACA
*
68039038 ACAAGGCA-GCAACATTACAC
1 ACAA-GCATGCAAAATTACAC
68039058 CACTATCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
22 9 0.50
23 3 0.17
ACGTcount: A:0.48, C:0.26, G:0.12, T:0.14
Consensus pattern (21 bp):
ACAAGCATGCAAAATTACACA
Found at i:68039668 original size:6 final size:6
Alignment explanation
Indices: 68039647--68039719 Score: 56
Period size: 6 Copynumber: 11.5 Consensus size: 6
68039637 CTCGATCTCT
* * ** **
68039647 TTTTTC CTTCTC TTTTTC TTTTTC ACTTTC TTTTTC AATTTC ATTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC
68039696 TTTTTC TTATTCTC TTTTTGC TTT
1 TTTTTC TT-TT-TC TTTTT-C TTT
68039720 CTTTCACACT
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
6 35 0.69
7 12 0.24
8 4 0.08
ACGTcount: A:0.07, C:0.21, G:0.01, T:0.71
Consensus pattern (6 bp):
TTTTTC
Found at i:68039668 original size:18 final size:18
Alignment explanation
Indices: 68039647--68039703 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
68039637 CTCGATCTCT
68039647 TTTTTC-CTTCTCTTTTTC
1 TTTTTCACTT-TCTTTTTC
68039665 TTTTTCACTTTCTTTTTC
1 TTTTTCACTTTCTTTTTC
** *
68039683 AATTTCATTTTTCTTTTTC
1 TTTTTCA-CTTTCTTTTTC
68039702 TT
1 TT
68039704 ATTCTCTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 19 0.59
19 13 0.41
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTCACTTTCTTTTTC
Found at i:68039738 original size:35 final size:34
Alignment explanation
Indices: 68039694--68039759 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
68039684 ATTTCATTTT
68039694 TCTTTTTCTTATTCTCT-TTTTGCTTTCTTTCACAC
1 TCTTTTTCTT-TTCTCTCTTTTG-TTTCTTTCACAC
* *
68039729 TCTTTTTCTTTTGTTTCTTTTGTTTCTTTCA
1 TCTTTTTCTTTTCTCTCTTTTGTTTCTTTCA
68039760 AATTCTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.06, C:0.21, G:0.05, T:0.68
Consensus pattern (34 bp):
TCTTTTTCTTTTCTCTCTTTTGTTTCTTTCACAC
Found at i:68039747 original size:9 final size:9
Alignment explanation
Indices: 68039733--68039757 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
68039723 TCACACTCTT
68039733 TTTCTTTTG
1 TTTCTTTTG
68039742 TTTCTTTTG
1 TTTCTTTTG
68039751 TTTCTTT
1 TTTCTTT
68039758 CAAATTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (9 bp):
TTTCTTTTG
Found at i:68039767 original size:34 final size:35
Alignment explanation
Indices: 68039693--68039767 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 35
68039683 AATTTCATTT
*
68039693 TTCTTTTTCTTATTCTCTTTTTGCTTTCTTTCACA
1 TTCTTTTTCTTATTCTCTTTTTGCTTTCTTTCAAA
* * *
68039728 CTCTTTTTCTT-TTGTTTCTTTTG-TTTCTTTCAAA
1 TTCTTTTTCTTATTCTCT-TTTTGCTTTCTTTCAAA
68039762 TTCTTT
1 TTCTTT
68039768 CTCACTTGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
34 19 0.56
35 15 0.44
ACGTcount: A:0.08, C:0.20, G:0.04, T:0.68
Consensus pattern (35 bp):
TTCTTTTTCTTATTCTCTTTTTGCTTTCTTTCAAA
Found at i:68042272 original size:20 final size:20
Alignment explanation
Indices: 68042226--68042273 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
68042216 AGTAAGCTCG
68042226 GTTGAGCTCAAACAAGCTGA
1 GTTGAGCTCAAACAAGCTGA
*** **
68042246 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACAAGCTGA
68042266 GTTGAGCT
1 GTTGAGCT
68042274 GGACAGAGCT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACAAGCTGA
Found at i:68042302 original size:20 final size:20
Alignment explanation
Indices: 68042255--68042303 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
68042245 AAACGAGCTC
68042255 AAATGAGCTGAGTTGAGCTGG
1 AAATGAGCTGAG-TGAGCTGG
*
68042276 ACA-GAGCTCGAG-GAGCTGG
1 AAATGAGCT-GAGTGAGCTGG
68042295 AAATGAGCT
1 AAATGAGCT
68042304 AGGATCAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 9 0.38
20 10 0.42
21 5 0.21
ACGTcount: A:0.31, C:0.14, G:0.37, T:0.18
Consensus pattern (20 bp):
AAATGAGCTGAGTGAGCTGG
Found at i:68044756 original size:46 final size:46
Alignment explanation
Indices: 68044689--68044778 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
68044679 TCATGTCAAC
*
68044689 TTCTTAAGCAATAAATATCATAGAATTTACTCACATCTTTACCAAT
1 TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCAAT
68044735 TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCA
1 TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCA
68044779 CATACTTGTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.40, C:0.20, G:0.04, T:0.36
Consensus pattern (46 bp):
TTCTTAAGCAATAAATATCATAGAATTTACTCACATCATTACCAAT
Found at i:68048306 original size:30 final size:31
Alignment explanation
Indices: 68048272--68048368 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
68048262 AGCTCACTCC
*
68048272 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
68048302 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
68048332 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
68048362 TAGCTCA
1 TAGCTCA
68048369 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:68056574 original size:12 final size:12
Alignment explanation
Indices: 68056557--68056588 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
68056547 ATACAAGTTT
68056557 AAAAAAAACCGA
1 AAAAAAAACCGA
*
68056569 AAAAAAAATCGA
1 AAAAAAAACCGA
68056581 AAAAAAAA
1 AAAAAAAA
68056589 GTGATTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.81, C:0.09, G:0.06, T:0.03
Consensus pattern (12 bp):
AAAAAAAACCGA
Done.