Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 205 of 276
Found at i:68057510 original size:9 final size:10
Alignment explanation
Indices: 68057503--68057559 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
68057493 AAGAGAAAAT
68057503 AAAGAAAAGA
1 AAAGAAAAGA
68057513 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
68057525 AAAGAAGA-A
1 AAAGAAAAGA
68057534 AAAGAAAATGA
1 AAAGAAAA-GA
68057545 AATA-AAAAGA
1 AA-AGAAAAGA
68057555 AAAGA
1 AAAGA
68057560 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:68057527 original size:6 final size:5
Alignment explanation
Indices: 68057503--68057559 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
68057493 AAGAGAAAAT
*
68057503 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
68057550 AAAGA AAAGA
1 AAAGA AAAGA
68057560 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:68057534 original size:15 final size:14
Alignment explanation
Indices: 68057503--68057559 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
68057493 AAGAGAAAAT
68057503 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
68057519 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
68057534 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
68057550 AAAGAAAAGA
1 AAAGAAAAGA
68057560 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:68057636 original size:12 final size:12
Alignment explanation
Indices: 68057628--68057652 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68057618 TTTGAAAAGC
68057628 AAAAAGAAAATG
1 AAAAAGAAAATG
68057640 AAAAAGAAAATG
1 AAAAAGAAAATG
68057652 A
1 A
68057653 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:68057649 original size:18 final size:18
Alignment explanation
Indices: 68057622--68057677 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
68057612 AAAGCCTTTG
68057622 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
68057641 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
68057659 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
68057676 AA
1 AA
68057678 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:68057662 original size:30 final size:31
Alignment explanation
Indices: 68057628--68057709 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
68057618 TTTGAAAAGC
*
68057628 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
68057658 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
68057688 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
68057710 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:68068339 original size:30 final size:30
Alignment explanation
Indices: 68068299--68068356 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
68068289 CACGACCATG
* *
68068299 ACACATGGGCGTGT-GATCTACCCGTGTGTC
1 ACACACGGGCGTGTGGATC-ACCCATGTGTC
68068329 ACACACGGGCGTGTGGATCACCCATGTG
1 ACACACGGGCGTGTGGATCACCCATGTG
68068357 GAAGTGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (30 bp):
ACACACGGGCGTGTGGATCACCCATGTGTC
Found at i:68075112 original size:129 final size:132
Alignment explanation
Indices: 68074862--68075164 Score: 450
Period size: 129 Copynumber: 2.3 Consensus size: 132
68074852 CTCATTTCCT
* * * *
68074862 TAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATTTTCCTGAGGTAGTAGGGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCTAAAGTAGTAGGGAA-CAGAT
* * *
68074927 TTAAGCCACTAGCCTTATCTCCCTGAATAGCAGTGGAGCGGGCTAAGGAATTGCAGATCTTATCT
65 TTAAGCCACTAACCTTATCTCCCTGAATAGCAGTGGAGCAGGATAAGGAATTGCAGATCTTATCT
68074992 CCC
130 CCC
* *
68074995 TAAGCAGTAATGGAGCAGATCGAAGATTGCAAATCTTATCTTCCTAAAGTAGTA-GGAA-A-ATT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCTAAAGTAGTAGGGAACAGATT
* * *
68075057 TAAGCCACTAACCTTATCTCCCTGAGTAGTAGTGGAGCAGGATGAGGAATTGCAGATCTTATCTC
66 TAAGCCACTAACCTTATCTCCCTGAATAGCAGTGGAGCAGGATAAGGAATTGCAGATCTTATCTC
68075122 CC
131 CC
* *
68075124 TAAGCAGTAGTGAAGCAGATCAAAGATGGCAAATCTTATCT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCT
68075165 CCATGTAACG
Statistics
Matches: 154, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
129 101 0.66
130 1 0.01
132 4 0.03
133 48 0.31
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
TAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCTAAAGTAGTAGGGAACAGATT
TAAGCCACTAACCTTATCTCCCTGAATAGCAGTGGAGCAGGATAAGGAATTGCAGATCTTATCTC
CC
Found at i:68076807 original size:3 final size:3
Alignment explanation
Indices: 68076799--68077199 Score: 116
Period size: 3 Copynumber: 134.3 Consensus size: 3
68076789 TTAATTTTAA
* * * *
68076799 TAT TAT TAT TGT TAT TAT TAT TAT TAT T-T ATAT AAT TTT TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* * * * ** * * *
68076844 TAT TAT TAC TAT TTT CTAT TTT TAC TAT TGC TAT TTT TAG CA- TAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
68076889 TAT TAT TCAT ATAT TAT TAT TTT CTAT T-T TTT TAT AAT CAT TAT TGT
1 TAT TAT T-AT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
68076936 TAA CA- TAT CAT TAT TA- TATT TAT TAT TTT TGT TAT CT-T CTA- TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT -TAT -TAT TAT
* * * * * *
68076980 TTT TAT TAT TAG TGT TAT TCCCT TAT TAT TAT ATGT TAC TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT T--AT TAT TAT TAT -TAT TAT TAT TAT TAT
* * * * *
68077027 TCAT TAT TTT TAT TTT TAT TAT TCT TTT TAT TAA TAT TAT TAT TAT
1 T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
68077073 TTT TAT TTT TAA TAT TAT T-T T-T TAC TAT AAT TAT TCT T-T AAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
** * *
68077119 TAT T-T T-T TCC TAT TAT TAT TA- TAT TAT TAT TAT TCT CAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* **
68077162 GTAT TAT TAT TGT TAT T-T T-T TGC T-T TAT TAT TAT TAT T
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
68077200 GTATTATCAC
Statistics
Matches: 284, Mismatches: 86, Indels: 56
0.67 0.20 0.13
Matches are distributed among these distances:
2 27 0.10
3 230 0.81
4 23 0.08
5 4 0.01
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:68076866 original size:22 final size:21
Alignment explanation
Indices: 68076833--68076882 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
68076823 TATTTATATA
*
68076833 ATTTTTATTTTTATTATTACT
1 ATTTTTATTTTTACTATTACT
*
68076854 ATTTTCTATTTTTACTATTGCT
1 ATTTT-TATTTTTACTATTACT
68076876 ATTTTTA
1 ATTTTTA
68076883 GCATATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (21 bp):
ATTTTTATTTTTACTATTACT
Found at i:68077107 original size:16 final size:15
Alignment explanation
Indices: 68077084--68077138 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
68077074 TTTATTTTTA
68077084 ATATTATTTTTTACT
1 ATATTATTTTTTACT
* *
68077099 ATAATTATTCTTTAAT
1 AT-ATTATTTTTTACT
*
68077115 ATATTATTTTTTCCT
1 ATATTATTTTTTACT
68077130 ATTATTATT
1 A-TATTATT
68077139 ATATTATTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
15 13 0.39
16 20 0.61
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (15 bp):
ATATTATTTTTTACT
Found at i:68079897 original size:19 final size:19
Alignment explanation
Indices: 68079873--68079918 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
68079863 ACAGGGGTAC
68079873 GCCCGTGTACCTTTGACAT
1 GCCCGTGTACCTTTGACAT
*
68079892 GCCCGTGTACCTTTGTCAT
1 GCCCGTGTACCTTTGACAT
68079911 GCCCGTGT
1 GCCCGTGT
68079919 CCTCATGCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.11, C:0.33, G:0.24, T:0.33
Consensus pattern (19 bp):
GCCCGTGTACCTTTGACAT
Found at i:68083645 original size:22 final size:22
Alignment explanation
Indices: 68083597--68083655 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
68083587 GTAAATACGT
*
68083597 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
68083619 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
68083641 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
68083656 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:68083822 original size:27 final size:26
Alignment explanation
Indices: 68083743--68083825 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
68083733 TCGATCGGTC
* * *
68083743 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
68083769 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
68083796 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
68083823 AAC
1 AAC
68083826 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:68097737 original size:13 final size:13
Alignment explanation
Indices: 68097719--68097745 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68097709 ATTTGACATA
68097719 ATGATGATGATAT
1 ATGATGATGATAT
68097732 ATGATGATGATAT
1 ATGATGATGATAT
68097745 A
1 A
68097746 GTCATATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (13 bp):
ATGATGATGATAT
Found at i:68101700 original size:43 final size:43
Alignment explanation
Indices: 68101652--68101804 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
68101642 TGTTCTCCTA
* *
68101652 TAAGACCACATCTGGGACGTTGGCATCGAGATGTGATTACGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGTG
* * * * *
68101695 TAAGACCATGTCTGGGACATCGACATC-ATATTTGATT-CGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGTG
* *
68101736 TAAGACC-CTGTCTGGGATAG-TGGCATCGATATGTGA-TAGCATG
1 TAAGACCAC-GTCTGGGA-CGTTGGCATCGATATGTGATTA-CGTG
*
68101779 TAAGACCACGTCTAGGACGTTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
68101805 TGTACGATAT
Statistics
Matches: 87, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
41 25 0.29
42 16 0.18
43 45 0.52
44 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGTG
Found at i:68102011 original size:20 final size:21
Alignment explanation
Indices: 68101976--68102014 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
68101966 TTGCAAATCA
68101976 TATATGATGTAAATGAAAAAT
1 TATATGATGTAAATGAAAAAT
*
68101997 TATATG-TGTATATGAAAA
1 TATATGATGTAAATGAAAA
68102015 GTACATTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (21 bp):
TATATGATGTAAATGAAAAAT
Found at i:68106397 original size:27 final size:27
Alignment explanation
Indices: 68106367--68106544 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68106357 ATATTGAGTC
* * * *
68106367 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68106394 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68106421 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68106449 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68106476 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68106503 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68106530 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68106545 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68106506 original size:82 final size:81
Alignment explanation
Indices: 68106388--68106543 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68106378 TGCTATATAA
* *
68106388 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68106453 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68106470 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68106534 CACTTAGTGC
65 CACTTAGTGC
68106544 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68107090 original size:1 final size:1
Alignment explanation
Indices: 68107084--68107245 Score: 324
Period size: 1 Copynumber: 162.0 Consensus size: 1
68107074 TGTTTATAAC
68107084 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
68107149 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
68107214 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
68107246 CAATTCACGG
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 161 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:68109648 original size:14 final size:15
Alignment explanation
Indices: 68109631--68109659 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
68109621 TAATGAAAAT
68109631 TTCACACAT-ATAAA
1 TTCACACATAATAAA
68109645 TTCACACATAATAAA
1 TTCACACATAATAAA
68109660 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:68113234 original size:26 final size:26
Alignment explanation
Indices: 68113205--68113280 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
68113195 CCAACACACC
*
68113205 AATATCGCAATAAAGCTGCCAGTAAT
1 AATATCGCAACAAAGCTGCCAGTAAT
* *
68113231 AATATCGCAGCAGAGCTGCCAGTAAT
1 AATATCGCAACAAAGCTGCCAGTAAT
* * *
68113257 AGTAAT-GCAACAAAGTTTCCAGTA
1 AAT-ATCGCAACAAAGCTGCCAGTA
68113281 TCAGTATATG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 39 0.95
27 2 0.05
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.22
Consensus pattern (26 bp):
AATATCGCAACAAAGCTGCCAGTAAT
Found at i:68116826 original size:10 final size:10
Alignment explanation
Indices: 68116813--68116849 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
68116803 ACTAGCTCAC
*
68116813 TTGAGCTTGT
1 TTGAGCTCGT
68116823 TTGAGCTCGT
1 TTGAGCTCGT
68116833 TTGAGCTCGT
1 TTGAGCTCGT
68116843 TTGAGCT
1 TTGAGCT
68116850 TCCTTCTAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.11, C:0.16, G:0.30, T:0.43
Consensus pattern (10 bp):
TTGAGCTCGT
Found at i:68116829 original size:20 final size:20
Alignment explanation
Indices: 68116806--68116849 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
68116796 AGCTCCAACT
*
68116806 AGCTCACTTGAGCTTGTTTG
1 AGCTCACTTGAGCTCGTTTG
**
68116826 AGCTCGTTTGAGCTCGTTTG
1 AGCTCACTTGAGCTCGTTTG
68116846 AGCT
1 AGCT
68116850 TCCTTCTAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (20 bp):
AGCTCACTTGAGCTCGTTTG
Found at i:68119358 original size:5 final size:6
Alignment explanation
Indices: 68119328--68119397 Score: 59
Period size: 6 Copynumber: 11.5 Consensus size: 6
68119318 AAAGAGAATG
* * * * * *
68119328 AGAAAA AGAAAA ATGAAAT TGAAAA AGAAAA AGAAAG TGAAAC GGAAAA
1 AGAAAA AGAAAA A-GAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
* *
68119377 AGAGAA GGAAAA AGAAAA AGA
1 AGAAAA AGAAAA AGAAAA AGA
68119398 GATCGAGATG
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
6 45 0.92
7 4 0.08
ACGTcount: A:0.70, C:0.01, G:0.23, T:0.06
Consensus pattern (6 bp):
AGAAAA
Found at i:68119368 original size:24 final size:25
Alignment explanation
Indices: 68119328--68119393 Score: 73
Period size: 24 Copynumber: 2.7 Consensus size: 25
68119318 AAAGAGAATG
**
68119328 AGAAAAAGAAAAATGAAATTGAAAA
1 AGAAAAAGAAAAATGAAACGGAAAA
*
68119353 AGAAAAAG-AAAGTGAAACGGAAAA
1 AGAAAAAGAAAAATGAAACGGAAAA
* *
68119377 AGAGAAGGAAAAA-GAAA
1 AGAAAAAGAAAAATGAAA
68119394 AAGAGATCGA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
24 23 0.68
25 11 0.32
ACGTcount: A:0.70, C:0.02, G:0.23, T:0.06
Consensus pattern (25 bp):
AGAAAAAGAAAAATGAAACGGAAAA
Found at i:68119396 original size:18 final size:20
Alignment explanation
Indices: 68119311--68119399 Score: 82
Period size: 18 Copynumber: 4.7 Consensus size: 20
68119301 AGTGTGAAAG
68119311 AAAGCAAAAAGAGAATGAGAA
1 AAAG-AAAAAGAGAATGAGAA
*
68119332 AAAGAAAAATGA-AAT-TGAA
1 AAAGAAAAA-GAGAATGAGAA
*
68119351 AAAGAAAAAGA-AA-GTGAA
1 AAAGAAAAAGAGAATGAGAA
**
68119369 ACGGAAAAAGAGAA-G-GAA
1 AAAGAAAAAGAGAATGAGAA
68119387 AAAGAAAAAGAGA
1 AAAGAAAAAGAGA
68119400 TCGAGATGGA
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
18 31 0.52
19 15 0.25
20 8 0.13
21 6 0.10
ACGTcount: A:0.69, C:0.02, G:0.24, T:0.06
Consensus pattern (20 bp):
AAAGAAAAAGAGAATGAGAA
Found at i:68119405 original size:24 final size:24
Alignment explanation
Indices: 68119378--68119441 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
68119368 AACGGAAAAA
68119378 GAGAAGGAAAAAGAAAAAGAGAT-C
1 GAGAAGGAAAAAGAAAAAGA-ATGC
* * ** *
68119402 GAGATGGAGAGTGAAAAAGAATGT
1 GAGAAGGAAAAAGAAAAAGAATGC
68119426 GAGAA-GAAAAAGAAAA
1 GAGAAGGAAAAAGAAAA
68119442 TTGAAAAAGA
Statistics
Matches: 30, Mismatches: 9, Indels: 3
0.71 0.21 0.07
Matches are distributed among these distances:
23 10 0.33
24 20 0.67
ACGTcount: A:0.59, C:0.02, G:0.31, T:0.08
Consensus pattern (24 bp):
GAGAAGGAAAAAGAAAAAGAATGC
Found at i:68123712 original size:24 final size:24
Alignment explanation
Indices: 68123677--68123725 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
68123667 ATACACATAG
68123677 ACCCATCCTTCTTCTTCACGAACA
1 ACCCATCCTTCTTCTTCACGAACA
* *
68123701 ACCCATCTTTCTTTTTCACGAACA
1 ACCCATCCTTCTTCTTCACGAACA
68123725 A
1 A
68123726 AACTGGTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.37, G:0.04, T:0.33
Consensus pattern (24 bp):
ACCCATCCTTCTTCTTCACGAACA
Found at i:68128466 original size:24 final size:25
Alignment explanation
Indices: 68128430--68128484 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
68128420 CCTCCTAAAA
68128430 TCTCCCCATAATCCTCTCCTTGATTT
1 TCTCCCCA-AATCCTCTCCTTGATTT
*
68128456 TCTCCCC-AATCCTCTTCTTGATTT
1 TCTCCCCAAATCCTCTCCTTGATTT
*
68128480 CCTCC
1 TCTCC
68128485 ACATAGCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 20 0.74
26 7 0.26
ACGTcount: A:0.13, C:0.42, G:0.04, T:0.42
Consensus pattern (25 bp):
TCTCCCCAAATCCTCTCCTTGATTT
Found at i:68129743 original size:27 final size:26
Alignment explanation
Indices: 68129701--68129798 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 26
68129691 TTAGTTTACC
* *
68129701 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTAC-CAAATACCCTCGATTTGTA
* *
68129728 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TACCCTCGATTTGTA
**
68129755 AAATTACCCAAATTTCCTCGATTTGTA
1 AAATTA-CCAAATACCCTCGATTTGTA
* *
68129782 GAATTACCGGAATACCC
1 AAATTACC-AAATACCC
68129799 CTGTAGGGTA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
26 5 0.09
27 46 0.82
28 5 0.09
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGATTTGTA
Found at i:68129809 original size:27 final size:27
Alignment explanation
Indices: 68129779--68130086 Score: 335
Period size: 27 Copynumber: 11.7 Consensus size: 27
68129769 TCCTCGATTT
*
68129779 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
68129806 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
68129833 GTAGAATTATCGCAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68129860 GTAGATTTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
68129887 GTAGAAATACCGAAGTACCCTTGTA-G
1 GTAGAATTACCGAAATACCCCTGTAGG
*
68129913 G--G---TA--GAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68129933 GTAGAATTACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68129960 GTAGAATTACCGAAATGCCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** * *
68129987 GTAGAATTACTAAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
68130014 GTAGAATTACCGAAATACCCCCGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* **
68130041 GTAGAATTATCGAAATACCTTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
68130068 GTAGAATTATTGAAATACC
1 GTAGAATTACCGAAATACC
68130087 NNNNNNNNNN
Statistics
Matches: 242, Mismatches: 31, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
19 13 0.05
20 2 0.01
21 2 0.01
22 1 0.00
24 1 0.00
25 2 0.01
26 2 0.01
27 219 0.90
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:68129923 original size:46 final size:46
Alignment explanation
Indices: 68129871--68129970 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 46
68129861 TAGATTTACC
* * *
68129871 GAAATACCCTTGTAGGGTAGAAATACCGAAGTACCCTTGTAGGGTA
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTA
* *
68129917 GAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTA
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTA
*
68129963 GAATTACC
1 GAAATACC
68129971 GAAATGCCCC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (46 bp):
GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTA
Found at i:68129926 original size:19 final size:19
Alignment explanation
Indices: 68129902--68129938 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
68129892 AATACCGAAG
68129902 TACCCTTGTAGGGTAGAAA
1 TACCCTTGTAGGGTAGAAA
68129921 TACCCTTGTAGGGTAGAA
1 TACCCTTGTAGGGTAGAA
68129939 TTACTGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
TACCCTTGTAGGGTAGAAA
Found at i:68129949 original size:127 final size:127
Alignment explanation
Indices: 68129792--68130046 Score: 377
Period size: 127 Copynumber: 2.0 Consensus size: 127
68129782 GAATTACCGG
* * *
68129792 AATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTAT
1 AATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTAT
* * * * **
68129857 AGGGTAGATTTACCGAAATACCCTTGTAGGGTAGAAATACCGAAGTACCCTTGTAGGGTAGA
66 AGGGTAGAATTACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCCCGTAGGGTAGA
* *
68129919 AATACCCTTGTAGGGTAGAATTA-CTGAAATACCCCTATAGGGTAGAATTACCGAAATGCCCCTA
1 AATACCCCTGTAGGGTAGAATTATC-GAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTA
* *
68129983 TAGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCCGTAGGGTAGA
65 TAGGGTAGAATTACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCCCGTAGGGTAGA
68130046 A
1 A
68130047 TTATCGAAAT
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
126 1 0.01
127 113 0.99
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (127 bp):
AATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTAT
AGGGTAGAATTACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCCCGTAGGGTAGA
Found at i:68129970 original size:100 final size:100
Alignment explanation
Indices: 68129817--68130086 Score: 299
Period size: 100 Copynumber: 2.6 Consensus size: 100
68129807 TAGAATTATC
* * *
68129817 GAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTATAGGGTAGATTTACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCT
* * * *
68129882 GTAGGGTAGAAATACCGAAGTACCCTTGTAGGGTA
66 ATAGGGTAGAAATACCAAAATACCCTTATAGGGTA
* *
68129917 GAAATACCCTTGTAGGGTAGAATTA-CTGAAATACCCCTATAGGGTAGAATTACCGAAATGCCCC
1 GAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCCTATAGGGTAGAATTACCGAAATACCCC
* *
68129981 TATAGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTA
65 TATAGGGTAGAAATACCAAAATACCCTTATA-GG--G---TA
* ** * **
68130023 CCGAAATACCCCCGTAGGGTAGAATTATCGAAATACCTTTGTAGGGTAGAATTATTGAAATACC
1 --GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACC
68130087 NNNNNNNNNN
Statistics
Matches: 141, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
99 1 0.01
100 82 0.58
101 2 0.01
103 1 0.01
106 2 0.01
108 52 0.37
109 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (100 bp):
GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCT
ATAGGGTAGAAATACCAAAATACCCTTATAGGGTA
Found at i:68131764 original size:27 final size:27
Alignment explanation
Indices: 68131733--68131830 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
68131723 TTAGTTTACC
** *
68131733 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCCAAATACCCTCGATTTGTA
* *
68131760 AAATTA-CCAAAGTACCCCCGATTTATA
1 AAATTACCCAAA-TACCCTCGATTTGTA
**
68131787 AAATTACCCAAATTTCCTCGATTTGTA
1 AAATTACCCAAATACCCTCGATTTGTA
* **
68131814 GAATTACCGGAATACCC
1 AAATTACCCAAATACCC
68131831 CTGTAGGGTA
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
26 3 0.05
27 47 0.85
28 5 0.09
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCGATTTGTA
Found at i:68131841 original size:27 final size:27
Alignment explanation
Indices: 68131811--68132143 Score: 450
Period size: 27 Copynumber: 12.3 Consensus size: 27
68131801 TCCTCGATTT
*
68131811 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
68131838 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
68131865 GTAGAATTATCGCAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68131892 GTAGATTTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68131919 GTAGAATTACCGGAATACCCCGGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
68131946 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68131973 GTAGAATTATCGCAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68132000 GTAGAGTTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68132027 GTAGAATTACCGAAATATCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
68132054 GTAGAGTTACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
68132081 GTAGAATTACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
68132108 ATAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
68132135 GTAGAATTA
1 GTAGAATTA
68132144 NNNNNNNNNN
Statistics
Matches: 270, Mismatches: 36, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 270 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:68131923 original size:108 final size:108
Alignment explanation
Indices: 68131811--68132143 Score: 508
Period size: 108 Copynumber: 3.1 Consensus size: 108
68131801 TCCTCGATTT
68131811 GTAGAATTACCGGAATACCCCTGTAGGGTAGAATTA-TCGAAATACCCCTGTAGGGTAGAATTAT
1 GTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTAT
*
68131875 CGCAATACCCCTATAGGGTAGATTTACCGAAATACCCCTATAGG
65 CGCAATACCCCTATAGGGTAGAATTACCGAAATACCCCTATAGG
*
68131919 GTAGAATTACCGGAATACCCCGGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATC
1 GTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATC
* * * *
68131984 GCAATACCCCTGTAGGGTAGAGTTACTGAAATACCCCTGTAGG
66 GCAATACCCCTATAGGGTAGAATTACCGAAATACCCCTATAGG
* * * * *
68132027 GTAGAATTACCGAAATATCCTTGTAGGGTAGAGTTACTGAAATACCCCTATAGGGTAGAATTA-C
1 GTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATC
* * *
68132091 TGAAATACCCCTATAGGATAGAAATACCGAAATACCCCTATAGG
66 -GCAATACCCCTATAGGGTAGAATTACCGAAATACCCCTATAGG
68132135 GTAGAATTA
1 GTAGAATTA
68132144 NNNNNNNNNN
Statistics
Matches: 205, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
107 1 0.00
108 203 0.99
109 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (108 bp):
GTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATC
GCAATACCCCTATAGGGTAGAATTACCGAAATACCCCTATAGG
Found at i:68133613 original size:27 final size:27
Alignment explanation
Indices: 68133583--68134077 Score: 774
Period size: 27 Copynumber: 18.3 Consensus size: 27
68133573 TCCTTGATTT
68133583 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
* *
68133610 GTAGAATTACCGAAATACCCATGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
* * * *
68133637 GTAGAATTATCGCAATACCCTTATAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
* * *
68133664 GTAGAATTACTGAAATACCCCTATAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
*
68133691 GTAGAATTACCAGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
68133718 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
68133745 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
68133772 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
68133799 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
*
68133826 GTAGAATTATCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
68133853 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
* * *
68133880 GTAGAATTATCGCAATACCCTTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
* *
68133907 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
68133934 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
* * * * *
68133961 GTAGAATTATCGCAATACACCTATGGG
1 GTAGAATTACCGGAATACCCCTGTAGG
* *
68133988 GTAGAATTATCGCAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
*
68134015 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
68134042 GTAGAATTACCGGAATACCCCTGTAGG
1 GTAGAATTACCGGAATACCCCTGTAGG
68134069 GTAGAATTA
1 GTAGAATTA
68134078 NNNNNNNNNN
Statistics
Matches: 433, Mismatches: 35, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 433 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGGAATACCCCTGTAGG
Found at i:68143214 original size:27 final size:27
Alignment explanation
Indices: 68143184--68143305 Score: 199
Period size: 27 Copynumber: 4.5 Consensus size: 27
68143174 GGATAATTTT
68143184 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
68143211 TAGGGTAGAATTATCGCAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
68143238 TAGGGTAGAATTACCGAAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
**
68143265 TAGGGTAGAATTACAAAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
68143292 TAGGGTAGAATTAC
1 TAGGGTAGAATTAC
68143306 TTGATCATGA
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:68144630 original size:11 final size:10
Alignment explanation
Indices: 68144583--68144644 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
68144573 TTTGAACCAT
*
68144583 TACCAATTCG
1 TACCAATTCA
*
68144593 TACCAAATACCA
1 TACC-AAT-TCA
*
68144605 TACCATTTCA
1 TACCAATTCA
68144615 TACCAATTCTA
1 TACCAATTC-A
* *
68144626 TACCATTTCG
1 TACCAATTCA
68144636 TACCAATTC
1 TACCAATTC
68144645 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.31, G:0.03, T:0.32
Consensus pattern (10 bp):
TACCAATTCA
Found at i:68144630 original size:21 final size:21
Alignment explanation
Indices: 68144604--68144644 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
68144594 ACCAAATACC
68144604 ATACCATTTCATACCAATTCT
1 ATACCATTTCATACCAATTCT
*
68144625 ATACCATTTCGTACCAATTC
1 ATACCATTTCATACCAATTC
68144645 CCAAATACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.29, G:0.02, T:0.37
Consensus pattern (21 bp):
ATACCATTTCATACCAATTCT
Found at i:68145688 original size:30 final size:30
Alignment explanation
Indices: 68145630--68145688 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
68145620 TTTACGAGCC
* *
68145630 TAGGGGCCAAAGTGTAAATAAGTGAAAGTT
1 TAGGGGCCAAAATGTAAATAAGTAAAAGTT
* **
68145660 TAGGGGTCAAAATGTAAATTTGTAAAAGT
1 TAGGGGCCAAAATGTAAATAAGTAAAAGT
68145689 ATGATTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCCAAAATGTAAATAAGTAAAAGTT
Found at i:68147646 original size:24 final size:24
Alignment explanation
Indices: 68147609--68147654 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
68147599 AATAATTTAG
68147609 TAACTGTGACTCGAGA-AAATAGCA
1 TAACTGTGACTCGA-ATAAATAGCA
68147633 TAACTG-GACTTCGAATAAATAG
1 TAACTGTGAC-TCGAATAAATAG
68147655 AGAGAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (24 bp):
TAACTGTGACTCGAATAAATAGCA
Found at i:68148034 original size:164 final size:164
Alignment explanation
Indices: 68147843--68148171 Score: 658
Period size: 164 Copynumber: 2.0 Consensus size: 164
68147833 CTTAATGTCT
68147843 GCAAGTGAGTGGCATGTATAGGGACTTAGTTTTTATGTTAGATGTTGTTATGATTTTCCATATGT
1 GCAAGTGAGTGGCATGTATAGGGACTTAGTTTTTATGTTAGATGTTGTTATGATTTTCCATATGT
68147908 ATTGAAATATATTGATTCATTTTATATAGCCATGAGATGTGGCTTATAATGGTTATGGCTTGTAA
66 ATTGAAATATATTGATTCATTTTATATAGCCATGAGATGTGGCTTATAATGGTTATGGCTTGTAA
68147973 GCCGATTCATTCATGCTATGTGTTAATGTCTTGC
131 GCCGATTCATTCATGCTATGTGTTAATGTCTTGC
68148007 GCAAGTGAGTGGCATGTATAGGGACTTAGTTTTTATGTTAGATGTTGTTATGATTTTCCATATGT
1 GCAAGTGAGTGGCATGTATAGGGACTTAGTTTTTATGTTAGATGTTGTTATGATTTTCCATATGT
68148072 ATTGAAATATATTGATTCATTTTATATAGCCATGAGATGTGGCTTATAATGGTTATGGCTTGTAA
66 ATTGAAATATATTGATTCATTTTATATAGCCATGAGATGTGGCTTATAATGGTTATGGCTTGTAA
68148137 GCCGATTCATTCATGCTATGTGTTAATGTCTTGC
131 GCCGATTCATTCATGCTATGTGTTAATGTCTTGC
68148171 G
1 G
68148172 ATGTGGTTAT
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
164 165 1.00
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (164 bp):
GCAAGTGAGTGGCATGTATAGGGACTTAGTTTTTATGTTAGATGTTGTTATGATTTTCCATATGT
ATTGAAATATATTGATTCATTTTATATAGCCATGAGATGTGGCTTATAATGGTTATGGCTTGTAA
GCCGATTCATTCATGCTATGTGTTAATGTCTTGC
Found at i:68161963 original size:40 final size:40
Alignment explanation
Indices: 68161883--68162061 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
68161873 TTCGGATCAC
* * *
68161883 ATCCAGGCTAAGTCCCGAAGGGA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
68161922 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
68161962 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
68162002 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
68162042 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
68162062 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.27
40 91 0.71
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:68169040 original size:40 final size:40
Alignment explanation
Indices: 68168964--68169138 Score: 257
Period size: 40 Copynumber: 4.4 Consensus size: 40
68168954 GATGACATCT
* *
68168964 GGGCTAAGTCTCGAAGGCA-TGGTGCTAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
* *
68169003 GGGCTAAGCCCCGAAGGCAGTTGTGCTAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
*
68169043 GGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
*
68169083 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCC
*
68169123 -GGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
68169139 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
39 32 0.26
40 91 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
Found at i:68177761 original size:27 final size:27
Alignment explanation
Indices: 68177731--68177803 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
68177721 CCTTAATTGA
* * *
68177731 TAAAAGGACTGTCTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
68177758 TAAAATGACTGTTTTGACCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
68177785 TAAAATGACTATTTTGCCC
1 TAAAATGACTGTTTTGCCC
68177804 CTATTTGTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATATGG
Found at i:68178205 original size:18 final size:18
Alignment explanation
Indices: 68178152--68178206 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
68178142 GGACTTGCAT
*
68178152 ACTGTTTACTGTTACTGT
1 ACTGTTTACTGTTACTGC
*
68178170 ACTGTTTACTATTACTGC
1 ACTGTTTACTGTTACTGC
*
68178188 ACTGTTTATTGTTACTGC
1 ACTGTTTACTGTTACTGC
68178206 A
1 A
68178207 ATGGGCCAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (18 bp):
ACTGTTTACTGTTACTGC
Found at i:68182181 original size:42 final size:42
Alignment explanation
Indices: 68182128--68182253 Score: 132
Period size: 44 Copynumber: 3.0 Consensus size: 42
68182118 TAAATATCAG
*
68182128 TGCCACTGTCCCAGACAGGGTCTTACA-AGAAATCATATACGA
1 TGCCAATGTCCCAGACAGGGTCTTACACA-AAATCATATACGA
* *
68182170 TGCCAATGTCCCAGACATGGTCTTACACATAAATC-TCAAATCGA
1 TGCCAATGTCCCAGACAGGGTCTTACACA-AAATCAT-ATA-CGA
** *
68182214 TGCCAACATCCCAGAC-GTGGTCTTACACAAAATCACATAC
1 TGCCAATGTCCCAGACAG-GGTCTTACACAAAATCATATAC
68182254 CGGGATCCTA
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
42 27 0.39
43 15 0.21
44 28 0.40
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (42 bp):
TGCCAATGTCCCAGACAGGGTCTTACACAAAATCATATACGA
Found at i:68182228 original size:44 final size:44
Alignment explanation
Indices: 68182136--68182247 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 44
68182126 AGTGCCACTG
* * **
68182136 TCCCAGACAGGGTCTTACA-AGAAA--TCATATACGATGCCAATG
1 TCCCAGACATGGTCTTACACA-AAATCTCAAATACGATGCCAACA
68182178 TCCCAGACATGGTCTTACACATAAATCTCAAAT-CGATGCCAACA
1 TCCCAGACATGGTCTTACACA-AAATCTCAAATACGATGCCAACA
*
68182222 TCCCAGACGTGGTCTTACACAAAATC
1 TCCCAGACATGGTCTTACACAAAATC
68182248 ACATACCGGG
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 18 0.30
43 9 0.15
44 29 0.48
45 5 0.08
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACAAAATCTCAAATACGATGCCAACA
Found at i:68185111 original size:31 final size:31
Alignment explanation
Indices: 68185073--68185190 Score: 157
Period size: 31 Copynumber: 3.8 Consensus size: 31
68185063 ACAAATGACA
* * *
68185073 AGTGAAAAGTGGTAGCTTCAGCTACCTGAAC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
68185104 AGTGAAAAATGGTAGCTCCGGCAACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
68185135 AGTGAAAAGTGGTAG-TACCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CCGGCTACCTGATC
* *
68185166 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
68185191 AAGTGACAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
30 1 0.01
31 74 0.97
32 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:68185294 original size:47 final size:46
Alignment explanation
Indices: 68185208--68185422 Score: 161
Period size: 47 Copynumber: 4.7 Consensus size: 46
68185198 AAGTGATTTC
* * * *
68185208 CGTACAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * *
68185254 CTGTATAAGACCATATCTGGGATATGGTATTAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * * * *
68185301 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTA
1 CGTATAAGACCATATCTGGGATATGGCATC-A-GTGAGATATATGA-TA
* * *
68185350 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATG-ATA
* * * *
68185392 TGTGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATATCTGGGATATGGCATCA
68185423 TTATGTGAAG
Statistics
Matches: 145, Mismatches: 18, Indels: 15
0.81 0.10 0.08
Matches are distributed among these distances:
42 38 0.26
43 1 0.01
46 25 0.17
47 39 0.27
48 11 0.08
49 31 0.21
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:68185360 original size:49 final size:48
Alignment explanation
Indices: 68185213--68185465 Score: 209
Period size: 42 Copynumber: 5.6 Consensus size: 48
68185203 ATTTCCGTAC
* * * * * * *
68185213 AAGACCATATCTGGGATATGGCATCG--GTGTGATATATGCTACTGTAT
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTC-GTGT
* * * *
68185260 AAGACCATATCTGGGATATGGTAT---TAGTGAGATATGTGATTCGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATA-TGTGATATGTGATTCGTGT
68185306 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-CGTGT
*
68185355 AAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTGT
68185397 AAGACCATAGCTGGGCTATGGCATC-ATTATGTGA-A---GA-T-GTGT
1 AAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATTCGTGT
* **
68185439 AAGACCATAGTTGAACTATGGCATCGA
1 AAGACCATAGCTGGGCTATGGCATCGA
68185466 GAAAACGAAG
Statistics
Matches: 181, Mismatches: 16, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 64 0.35
43 1 0.01
44 1 0.01
45 1 0.01
46 25 0.14
47 34 0.19
48 14 0.08
49 40 0.22
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (48 bp):
AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTGT
Found at i:68188455 original size:19 final size:20
Alignment explanation
Indices: 68188431--68188468 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68188421 GGTACCACCA
68188431 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
68188450 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
68188469 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:68188808 original size:93 final size:93
Alignment explanation
Indices: 68188698--68188868 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
68188688 GCCCCTAAGT
* * *
68188698 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
68188763 CGAGTTCGGATGCCTTGTTACATCTCAC
66 CGAGTTCGGATGCCTTGTTACATCTCAC
* * *
68188791 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
68188856 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68188869 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTTGTTACATCTCAC
Found at i:68188865 original size:46 final size:46
Alignment explanation
Indices: 68188693--68188865 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
68188683 AACCCGCCCC
* * * *
68188693 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
68188739 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTTGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---CAT-TTGCATCCA
* *
68188787 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
68188832 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68188866 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
44 3 0.03
45 2 0.02
46 59 0.55
47 29 0.27
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:68193080 original size:40 final size:40
Alignment explanation
Indices: 68193036--68193223 Score: 340
Period size: 40 Copynumber: 4.7 Consensus size: 40
68193026 GCAAACACAT
* *
68193036 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68193076 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
68193116 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
68193156 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68193196 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
68193224 TCCAATGCTC
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:68199363 original size:52 final size:52
Alignment explanation
Indices: 68199285--68199384 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 52
68199275 ACAGGGCTTA
*
68199285 AATACTTATGCCGTTTGTGTCTAAAGAAAGTAGACTCGAAAAGGAATCTTTC
1 AATACTTATGCCGTTTGTGTCTAAAGAAACTAGACTCGAAAAGGAATCTTTC
*
68199337 AATACTTATGCCGTTTGTTTCTAAAGAAACTAGACTCGAAAAGGAATC
1 AATACTTATGCCGTTTGTGTCTAAAGAAACTAGACTCGAAAAGGAATC
68199385 CGTACATATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (52 bp):
AATACTTATGCCGTTTGTGTCTAAAGAAACTAGACTCGAAAAGGAATCTTTC
Found at i:68200032 original size:26 final size:26
Alignment explanation
Indices: 68200003--68200055 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
68199993 TTTACAGTTT
*
68200003 TACCCGTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
68200029 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
68200055 T
1 T
68200056 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:68205365 original size:26 final size:26
Alignment explanation
Indices: 68205336--68205388 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
68205326 TTTACAGTTT
68205336 TACCCCTAGGACATAAATT-ACCGAAA
1 TACCCCTAGG-CATAAATTGACCGAAA
* *
68205362 TACCCCTAGGCTTAAATTGACCTAAA
1 TACCCCTAGGCATAAATTGACCGAAA
68205388 T
1 T
68205389 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGCATAAATTGACCGAAA
Found at i:68208005 original size:17 final size:17
Alignment explanation
Indices: 68207983--68208016 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68207973 CACTAACATG
*
68207983 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
68208000 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
68208017 TATTTTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:68208483 original size:15 final size:15
Alignment explanation
Indices: 68208460--68208493 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
68208450 GCAACTTCTT
*
68208460 CTTCTTCAGCAACAA
1 CTTCATCAGCAACAA
68208475 CTTCATCAGCAACAA
1 CTTCATCAGCAACAA
68208490 CTTC
1 CTTC
68208494 CTTCTCAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.32, C:0.35, G:0.06, T:0.26
Consensus pattern (15 bp):
CTTCATCAGCAACAA
Found at i:68212651 original size:43 final size:44
Alignment explanation
Indices: 68212601--68212734 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 44
68212591 GAGATATGTG
*
68212601 GCATCCGAGCTCGTTGAAAGGTCCGAGTTCATTATGGATGCA-A
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCATA
** *
68212644 GCATCCGAGCTCGTTGAGAGGTATGAGTTCATGGTGGATGCGATTCATGTA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCAT--T--ATG-GATGCA--TA
* **
68212695 ACATCTAAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
68212735 TGTTACACGT
Statistics
Matches: 73, Mismatches: 10, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
43 29 0.40
45 1 0.01
46 3 0.04
47 6 0.08
48 5 0.07
49 1 0.01
51 28 0.38
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCATA
Found at i:68217333 original size:79 final size:80
Alignment explanation
Indices: 68217235--68217417 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 80
68217225 TACTCATTCA
* *
68217235 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
68217298 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
68217315 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
68217379 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
68217394 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
68217418 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:68217417 original size:40 final size:40
Alignment explanation
Indices: 68217233--68217417 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
68217223 GCTACTCATT
* *
68217233 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
68217273 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
68217313 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
68217352 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
68217393 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68217418 CATCATTCGA
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 81 0.64
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:68231526 original size:40 final size:39
Alignment explanation
Indices: 68231442--68231626 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 39
68231432 TTGAATGATG
* * *
68231442 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
68231481 ATCCGGACTAAGATCCAAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68231522 TCCGGGCTAAGCCCGAAGGCATTTGTGAGAGTTACTAAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-AAT
*
68231562 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* *
68231600 AACCGGGCTATGTTCCGAAGGCATTTG
1 -TCCGGGCTAAG-TCCGAAGGCATTTG
68231627 AATGAGTAAC
Statistics
Matches: 120, Mismatches: 17, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 78 0.65
41 11 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:68231648 original size:79 final size:79
Alignment explanation
Indices: 68231498--68231659 Score: 186
Period size: 79 Copynumber: 2.1 Consensus size: 79
68231488 CTAAGATCCA
* * *
68231498 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGAGAGTTACTAAATT
1 AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTAAGAGTAACTAAATT
*
68231563 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * * *
68231577 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTTCCGAAGGCATTTG-AATGAGTAACTAT
1 AAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGTAA-GAGTAACTAA
* *
68231640 A-TCTGGTTAAATTCCG
63 ATTCGGGTTAAATCCCG
68231656 AAGG
1 AAGG
68231660 TACGTGATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.66
80 22 0.31
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTAAGAGTAACTAAATT
CGGGTTAAATCCCG
Found at i:68235298 original size:29 final size:29
Alignment explanation
Indices: 68235264--68235339 Score: 134
Period size: 29 Copynumber: 2.6 Consensus size: 29
68235254 GCATGAATAT
*
68235264 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATAGGCCACATA
*
68235293 AATGTGATTTGGGCCTAATAGGCCATATA
1 AATGTGATTTGGGCCTAATAGGCCACATA
68235322 AATGTGATTTGGGCCTAA
1 AATGTGATTTGGGCCTAA
68235340 AGGGTCATGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATAGGCCACATA
Found at i:68237387 original size:24 final size:24
Alignment explanation
Indices: 68237324--68237401 Score: 81
Period size: 24 Copynumber: 3.3 Consensus size: 24
68237314 TACCGATATA
*
68237324 TCAGCTCGTAAAAGCTTACTGTTC
1 TCAGCTCGTAAAAGCTTACTATTC
* *
68237348 TCAGCTC--AAATGAGCTTAGTATTT
1 TCAGCTCGTAAA--AGCTTACTATTC
*
68237372 TCAGCTCGTAAAAGCTTACAATT-
1 TCAGCTCGTAAAAGCTTACTATTC
68237395 TCAGCTC
1 TCAGCTC
68237402 AATAGAGCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
22 3 0.07
23 7 0.16
24 32 0.71
26 3 0.07
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (24 bp):
TCAGCTCGTAAAAGCTTACTATTC
Found at i:68245075 original size:24 final size:23
Alignment explanation
Indices: 68245000--68245142 Score: 92
Period size: 24 Copynumber: 6.0 Consensus size: 23
68244990 TACCGATATA
*
68245000 TCAGCTCGTAAGAGCTTACTGTT
1 TCAGCTCATAAGAGCTTACTGTT
* ** * *
68245023 TCTAG-TTAGTTGGAGGTTACTATT
1 TC-AGCTCA-TAAGAGCTTACTGTT
68245047 TCAGCTCATAAGAGCTTACTGTT
1 TCAGCTCATAAGAGCTTACTGTT
* * **
68245070 CTCAGCTCATCAGAACTTACCATT
1 -TCAGCTCATAAGAGCTTACTGTT
*
68245094 TCATCTCA-ATAGAGCTTACTGTT
1 TCAGCTCATA-AGAGCTTACTGTT
* *
68245117 CATCAGCTCAGGAGGAGCTTACTGTT
1 --TCAGCTCA-TAAGAGCTTACTGTT
68245143 CATAGCTCGA
Statistics
Matches: 89, Mismatches: 22, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
23 33 0.37
24 36 0.40
25 7 0.08
26 12 0.13
27 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (23 bp):
TCAGCTCATAAGAGCTTACTGTT
Found at i:68245278 original size:20 final size:20
Alignment explanation
Indices: 68245249--68245299 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
68245239 CAACGGGCAT
68245249 AAATACTGTTTATATGGATG
1 AAATACTGTTTATATGGATG
*
68245269 AAATATTGTTTATATGGATG
1 AAATACTGTTTATATGGATG
**
68245289 AGCTACTGTTT
1 AAATACTGTTT
68245300 GCAAATGGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (20 bp):
AAATACTGTTTATATGGATG
Found at i:68249717 original size:27 final size:27
Alignment explanation
Indices: 68249687--68249738 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
68249677 GTACAGTTTG
* *
68249687 GGCCTTAGCCCTATACAGTAATAGTGT
1 GGCCTAAGCCCAATACAGTAATAGTGT
* *
68249714 GGCCTAAGCCCAATATAGTATTAGT
1 GGCCTAAGCCCAATACAGTAATAGT
68249739 ACAGTGTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (27 bp):
GGCCTAAGCCCAATACAGTAATAGTGT
Found at i:68251085 original size:25 final size:25
Alignment explanation
Indices: 68251056--68251105 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
68251046 CATTATATAG
68251056 AAGTAACGATAATCATAGAAAGGAA
1 AAGTAACGATAATCATAGAAAGGAA
*
68251081 AAGTAAGGATAATCATAGAAAGGAA
1 AAGTAACGATAATCATAGAAAGGAA
68251106 GACCGCAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.56, C:0.06, G:0.22, T:0.16
Consensus pattern (25 bp):
AAGTAACGATAATCATAGAAAGGAA
Found at i:68262522 original size:15 final size:15
Alignment explanation
Indices: 68262502--68262546 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
68262492 AATTGAAATG
68262502 AAAATAAAAAATAAA
1 AAAATAAAAAATAAA
68262517 AAAATAAAAAAT-AA
1 AAAATAAAAAATAAA
68262531 AAAAT-AAAAATAAA
1 AAAATAAAAAATAAA
68262545 AA
1 AA
68262547 GATAGAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
13 6 0.21
14 11 0.38
15 12 0.41
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAATAAAAAATAAA
Found at i:68262546 original size:6 final size:7
Alignment explanation
Indices: 68262502--68262546 Score: 74
Period size: 7 Copynumber: 6.4 Consensus size: 7
68262492 AATTGAAATG
68262502 AAAATAA
1 AAAATAA
68262509 AAAATAAA
1 AAAAT-AA
68262517 AAAATAA
1 AAAATAA
68262524 AAAATAA
1 AAAATAA
68262531 AAAAT-A
1 AAAATAA
68262537 AAAATAA
1 AAAATAA
68262544 AAA
1 AAA
68262547 GATAGAAGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 6 0.17
7 23 0.64
8 7 0.19
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAATAA
Found at i:68268320 original size:21 final size:21
Alignment explanation
Indices: 68268295--68268338 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
68268285 CCGGGACTCC
68268295 AAAAACTTAAAGAACTTGAAA
1 AAAAACTTAAAGAACTTGAAA
68268316 AAAAACTTAAAGAACTTGAAA
1 AAAAACTTAAAGAACTTGAAA
68268337 AA
1 AA
68268339 CGAGGTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18
Consensus pattern (21 bp):
AAAAACTTAAAGAACTTGAAA
Found at i:68272889 original size:28 final size:28
Alignment explanation
Indices: 68272843--68272896 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
68272833 TAGAACAGAT
* * *
68272843 AGTCTATTAGGCCAGTAAACATGGGGTA
1 AGTCCATTAGGCCAATAAAAATGGGGTA
*
68272871 AGTCCATTAGGGCAATAAAAATGGGG
1 AGTCCATTAGGCCAATAAAAATGGGG
68272897 AAGAAAGGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.22
Consensus pattern (28 bp):
AGTCCATTAGGCCAATAAAAATGGGGTA
Found at i:68273871 original size:26 final size:26
Alignment explanation
Indices: 68273841--68273892 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
68273831 AAAAGACCAG
68273841 GTGGAGTCCACCATCCCAACAAAGAA
1 GTGGAGTCCACCATCCCAACAAAGAA
*
68273867 GTGGAGTCCACCATCCCGACAAAGAA
1 GTGGAGTCCACCATCCCAACAAAGAA
68273893 ACACTCTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.31, G:0.21, T:0.12
Consensus pattern (26 bp):
GTGGAGTCCACCATCCCAACAAAGAA
Found at i:68276239 original size:40 final size:40
Alignment explanation
Indices: 68276195--68276276 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
68276185 ATAATGGATG
*
68276195 GTTACATGTACTTCTATGGCTAACTTGTTGATGAATGTTT
1 GTTACATCTACTTCTATGGCTAACTTGTTGATGAATGTTT
68276235 GTTACATCTACTTCTATGGCTAACTTGTTGATGAATGTTT
1 GTTACATCTACTTCTATGGCTAACTTGTTGATGAATGTTT
68276275 GT
1 GT
68276277 GTTTAGGCAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.45
Consensus pattern (40 bp):
GTTACATCTACTTCTATGGCTAACTTGTTGATGAATGTTT
Found at i:68283120 original size:40 final size:40
Alignment explanation
Indices: 68283076--68283337 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
68283066 GCTCCTCGTT
* *
68283076 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
68283116 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68283156 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68283195 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68283234 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
68283273 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
68283314 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68283338 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:68294456 original size:55 final size:55
Alignment explanation
Indices: 68294397--68294506 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
68294387 TGGGGTTTTA
*
68294397 AATTATGTTAGACAACTTGTGCTACTCGGTTTTTAGTGAAAACGAGTAAAAGGGC
1 AATTATGTTAGACAACTTGTGCTACTCGGTTTTTAGTGAAAACAAGTAAAAGGGC
68294452 AATTATGTTAGACAACTTGTGCTACTCGGTTTTTAGTGAAAACAAGTAAAAGGGC
1 AATTATGTTAGACAACTTGTGCTACTCGGTTTTTAGTGAAAACAAGTAAAAGGGC
68294507 TTAATCGGCA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.31
Consensus pattern (55 bp):
AATTATGTTAGACAACTTGTGCTACTCGGTTTTTAGTGAAAACAAGTAAAAGGGC
Found at i:68295026 original size:44 final size:44
Alignment explanation
Indices: 68294963--68295050 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
68294953 GTAATATGCA
68294963 AATTTTGTTTACTATTTGATAAATATGAATTGCTACCGAGTATC
1 AATTTTGTTTACTATTTGATAAATATGAATTGCTACCGAGTATC
68295007 AATTTTGTTTACTATTTGATAAATATGAATTGCTACCGAGTATC
1 AATTTTGTTTACTATTTGATAAATATGAATTGCTACCGAGTATC
68295051 GATTCCGATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (44 bp):
AATTTTGTTTACTATTTGATAAATATGAATTGCTACCGAGTATC
Found at i:68295210 original size:46 final size:46
Alignment explanation
Indices: 68295160--68295332 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
68295150 TGGTTGAGCA
* *
68295160 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
68295206 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
68295253 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
68295299 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68295333 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68295316 original size:93 final size:93
Alignment explanation
Indices: 68295157--68295327 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
68295147 GGATGGTTGA
* * * *
68295157 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACGCCCGAACTCGTTGAGT
*
68295222 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
68295250 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACGCCCGAACTCGTTGAGT
68295315 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68295328 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68295594 original size:19 final size:20
Alignment explanation
Indices: 68295557--68295594 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68295547 ATAAGGTGGT
68295557 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68295577 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68295595 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68315717 original size:24 final size:23
Alignment explanation
Indices: 68315681--68315787 Score: 70
Period size: 23 Copynumber: 4.6 Consensus size: 23
68315671 GATATATCAA
* *
68315681 CTCGTAAGTGCTTACTGTTTTTAG
1 CTCGTTAGAGCTTACT-TTTTTAG
* * *
68315705 CTCGTTGGAGCTTACTATTTCAG
1 CTCGTTAGAGCTTACTTTTTTAG
* * *
68315728 CTCATAAGAGCTTACTCTTCTTAG
1 CTCGTTAGAGCTTACT-TTTTTAG
* * **
68315752 CTCGTTAAAACTTACCATTTTAG
1 CTCGTTAGAGCTTACTTTTTTAG
**
68315775 CTCAATAGAGCTT
1 CTCGTTAGAGCTT
68315788 CCTGTTCATC
Statistics
Matches: 60, Mismatches: 22, Indels: 3
0.71 0.26 0.04
Matches are distributed among these distances:
23 32 0.53
24 28 0.47
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.39
Consensus pattern (23 bp):
CTCGTTAGAGCTTACTTTTTTAG
Found at i:68315766 original size:47 final size:47
Alignment explanation
Indices: 68315685--68315787 Score: 118
Period size: 47 Copynumber: 2.2 Consensus size: 47
68315675 TATCAACTCG
* * * ** * *
68315685 TAAGTGCTTACTGTTTTTAGCTCGTTGGAGCTTACTATTTCAGCTCA
1 TAAGAGCTTACTCTTCTTAGCTCGTTAAAACTTACCATTTCAGCTCA
*
68315732 TAAGAGCTTACTCTTCTTAGCTCGTTAAAACTTACCATTTTAGCTCA
1 TAAGAGCTTACTCTTCTTAGCTCGTTAAAACTTACCATTTCAGCTCA
68315779 -ATAGAGCTT
1 TA-AGAGCTT
68315788 CCTGTTCATC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 1 0.02
47 46 0.98
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (47 bp):
TAAGAGCTTACTCTTCTTAGCTCGTTAAAACTTACCATTTCAGCTCA
Found at i:68323127 original size:27 final size:26
Alignment explanation
Indices: 68323072--68323176 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 26
68323062 GCTAGAACAA
* * * *
68323072 ATAATGCGACAGAGTCACCAGATACAG
1 ATAATGTGGCAGAGCCACCAGA-ATAG
68323099 ATAATCGTGGCAGAGCCACCAGAATAG
1 ATAAT-GTGGCAGAGCCACCAGAATAG
68323126 ATATATGTGGCAGAGCCACCAG-ATCAG
1 ATA-ATGTGGCAGAGCCACCAGAAT-AG
* *
68323153 ATATTTGTGGCATAGCCACCAGAA
1 ATA-ATGTGGCAGAGCCACCAGAA
68323177 CGCTTCCTCC
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.03
27 49 0.72
28 17 0.25
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
ATAATGTGGCAGAGCCACCAGAATAG
Found at i:68324820 original size:26 final size:26
Alignment explanation
Indices: 68324784--68324893 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
68324774 CATGAAATTC
68324784 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
68324810 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
68324836 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
68324862 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
68324888 TTATCA
1 TTATCA
68324894 ATTTGTACCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:68325784 original size:38 final size:38
Alignment explanation
Indices: 68325723--68325841 Score: 152
Period size: 38 Copynumber: 3.1 Consensus size: 38
68325713 ATTTGATGTG
* * *
68325723 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTATGTGCTGGTATTA
68325763 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTAT-GTGCTGGTATTA
*
68325801 TATCCGAGTTAAATCCCGCAGGCCTA-GTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGG-CTATGTGCTGGTATTA
68325839 TAT
1 TAT
68325842 ATGAGTTTAA
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
37 1 0.01
38 56 0.78
39 7 0.10
40 8 0.11
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTATGTGCTGGTATTA
Found at i:68327398 original size:60 final size:60
Alignment explanation
Indices: 68327328--68327507 Score: 351
Period size: 60 Copynumber: 3.0 Consensus size: 60
68327318 TCTATGATAT
68327328 AATGTCAAGGTGTATATGATATGTATATATTGAAACAAAGTAAGTGAATTGCAAATATGA
1 AATGTCAAGGTGTATATGATATGTATATATTGAAACAAAGTAAGTGAATTGCAAATATGA
68327388 AATGTCAAGGTGTATATGATATGTATATATTGAAACAAAGTAAGTGAATTGCAAATATGA
1 AATGTCAAGGTGTATATGATATGTATATATTGAAACAAAGTAAGTGAATTGCAAATATGA
*
68327448 AATGTCAAGGTGTATATGATATGTATATATTGAAACAAAGTAAGTGAATTACAAATATGA
1 AATGTCAAGGTGTATATGATATGTATATATTGAAACAAAGTAAGTGAATTGCAAATATGA
68327508 TATGCTATAT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 119 1.00
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.32
Consensus pattern (60 bp):
AATGTCAAGGTGTATATGATATGTATATATTGAAACAAAGTAAGTGAATTGCAAATATGA
Found at i:68327627 original size:43 final size:43
Alignment explanation
Indices: 68327578--68327699 Score: 199
Period size: 43 Copynumber: 2.8 Consensus size: 43
68327568 TACAAAGTAA
*
68327578 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCG
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCG
*
68327621 GTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTACCG
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCG
* * *
68327664 GTGATGTGTATCCGGGTCTTCGTGCCTAGAAGGCTT
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
68327700 AATGGCAGTG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.11, C:0.23, G:0.34, T:0.32
Consensus pattern (43 bp):
GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCG
Found at i:68327938 original size:58 final size:58
Alignment explanation
Indices: 68327841--68328030 Score: 291
Period size: 58 Copynumber: 3.4 Consensus size: 58
68327831 GGATGAATAT
* * *
68327841 GAGCACCATGTGTGCGA-AT-GAT--TAGAGGCACTGTGTGTGCAAATTCCTTTAACC
1 GAGCACTATGTGTGCGAGATCGATAATTGAGGCACTGTGTGTGCGAATTCCTTTAACC
68327895 GAGCACTATGTGTGCGAGATCGATAATTGAGGCACTGTGTGTGCGAATTCCTTTAACC
1 GAGCACTATGTGTGCGAGATCGATAATTGAGGCACTGTGTGTGCGAATTCCTTTAACC
* * *
68327953 GAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAGTT-CTTCAACC
1 GAGCACTATGTGTGCGAGATCGATAATTGAGGCACTGTGTGTGCGAATTCCTTTAACC
68328010 GAGCACTATGTGTGCGAGATC
1 GAGCACTATGTGTGCGAGATC
68328031 AGTCAGTGGG
Statistics
Matches: 126, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
54 16 0.13
55 2 0.02
56 3 0.02
57 28 0.22
58 77 0.61
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (58 bp):
GAGCACTATGTGTGCGAGATCGATAATTGAGGCACTGTGTGTGCGAATTCCTTTAACC
Found at i:68327968 original size:29 final size:28
Alignment explanation
Indices: 68327868--68328026 Score: 124
Period size: 29 Copynumber: 5.5 Consensus size: 28
68327858 ATGATTAGAG
* *
68327868 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAACCGA
** **
68327897 GCACTATGTGTGCGAGA-TCGATAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
68327925 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAACCGA
** **
68327955 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* * *
68327983 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCGAATTCTTTAACCGA
68328012 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
68328027 GATCAGTCAG
Statistics
Matches: 99, Mismatches: 24, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
28 27 0.27
29 64 0.65
30 8 0.08
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:68328043 original size:28 final size:27
Alignment explanation
Indices: 68327897--68328051 Score: 78
Period size: 29 Copynumber: 5.4 Consensus size: 27
68327887 CTTTAACCGA
* *
68327897 GCACTATGTGTGCGAGATCGATAATTGAG
1 GCACTATGTGTGCGAGATCG-TCACTG-G
* * * * *
68327926 GCACTGTGTGTGCGA-ATTCCTTTAACCGA
1 GCACTATGTGTGCGAGA-T-C-GTCACTGG
* *
68327955 GCACTATGTGTGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATC-GTCACTG-G
* * * * *
68327984 GCACTGTGTGTGCGAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGATCGTC-ACTGG
*
68328012 GCACTATGTGTGCGAGATCAGTCAGTGG
1 GCACTATGTGTGCGAGATC-GTCACTGG
*
68328040 GCACTAAGTGTG
1 GCACTATGTGTG
68328052 TGAAATGAGA
Statistics
Matches: 94, Mismatches: 25, Indels: 15
0.70 0.19 0.11
Matches are distributed among these distances:
28 37 0.39
29 51 0.54
30 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATCGTCACTGG
Found at i:68331679 original size:38 final size:38
Alignment explanation
Indices: 68331637--68331773 Score: 157
Period size: 38 Copynumber: 3.6 Consensus size: 38
68331627 GTAGGCTATA
*
68331637 TGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGTAGGCTTCG
* * * *
68331675 TGCTGGTATTATATCCGGGTTAAATCCTGCAGGCCTAG
1 TGCTGGTATTATATCCGGGTTAAATCCCGTAGGCTTCG
* * *
68331713 TGCTGGTATTATATCTGAGTTTAAAGTCTCGTAGGCTTCG
1 TGCTGGTATTATATCCG-GGTTAAA-TCCCGTAGGCTTCG
* * *
68331753 TGCTGGTGTTATGTTCGGGTT
1 TGCTGGTATTATATCCGGGTT
68331774 TTATAGCTCA
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
38 49 0.61
39 9 0.11
40 22 0.28
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGTAGGCTTCG
Found at i:68331936 original size:38 final size:38
Alignment explanation
Indices: 68331894--68332040 Score: 138
Period size: 38 Copynumber: 3.8 Consensus size: 38
68331884 TTAAAGACCA
* *
68331894 GTAGGCTATATGCTGGAATTATATCCGGGTTAAATCCC
1 GTAGGCTATGTGCTGGTATTATATCCGGGTTAAATCCC
*
68331932 GTAGGCT-TCGTGCTGGTATTATATCCGGGTTAAATCCT
1 GTAGGCTAT-GTGCTGGTATTATATCCGGGTTAAATCCC
* * * *
68331970 GCAGGCCTA-GTGCTGGTATTATATCTGAGTTTAAAGTCTC
1 GTAGG-CTATGTGCTGGTATTATATCCG-GGTTAAA-TCCC
* * *
68332010 GTAGGCT-TCGTGCTGGTGTTATGTTCGGGTT
1 GTAGGCTAT-GTGCTGGTATTATATCCGGGTT
68332041 TTATAGCTCA
Statistics
Matches: 88, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
37 1 0.01
38 54 0.61
39 13 0.15
40 20 0.23
ACGTcount: A:0.19, C:0.17, G:0.28, T:0.36
Consensus pattern (38 bp):
GTAGGCTATGTGCTGGTATTATATCCGGGTTAAATCCC
Found at i:68332088 original size:267 final size:267
Alignment explanation
Indices: 68331613--68332146 Score: 1068
Period size: 267 Copynumber: 2.0 Consensus size: 267
68331603 ATGTGTATCC
68331613 GGGCTTAAAGACCAGTAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCGTGC
1 GGGCTTAAAGACCAGTAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCGTGC
68331678 TGGTATTATATCCGGGTTAAATCCTGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCTC
66 TGGTATTATATCCGGGTTAAATCCTGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCTC
68331743 GTAGGCTTCGTGCTGGTGTTATGTTCGGGTTTTATAGCTCACAGGCCAAGTGTTAGTGAATTTGA
131 GTAGGCTTCGTGCTGGTGTTATGTTCGGGTTTTATAGCTCACAGGCCAAGTGTTAGTGAATTTGA
68331808 TAAAGTATATGACTACAAGATCCTATGCTAAGATGATCGTATTACACATTAAGTGATCCTGGTAT
196 TAAAGTATATGACTACAAGATCCTATGCTAAGATGATCGTATTACACATTAAGTGATCCTGGTAT
68331873 GTGATAT
261 GTGATAT
68331880 GGGCTTAAAGACCAGTAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCGTGC
1 GGGCTTAAAGACCAGTAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCGTGC
68331945 TGGTATTATATCCGGGTTAAATCCTGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCTC
66 TGGTATTATATCCGGGTTAAATCCTGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCTC
68332010 GTAGGCTTCGTGCTGGTGTTATGTTCGGGTTTTATAGCTCACAGGCCAAGTGTTAGTGAATTTGA
131 GTAGGCTTCGTGCTGGTGTTATGTTCGGGTTTTATAGCTCACAGGCCAAGTGTTAGTGAATTTGA
68332075 TAAAGTATATGACTACAAGATCCTATGCTAAGATGATCGTATTACACATTAAGTGATCCTGGTAT
196 TAAAGTATATGACTACAAGATCCTATGCTAAGATGATCGTATTACACATTAAGTGATCCTGGTAT
68332140 GTGATAT
261 GTGATAT
68332147 ATATATATTA
Statistics
Matches: 267, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 267 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (267 bp):
GGGCTTAAAGACCAGTAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCGTGC
TGGTATTATATCCGGGTTAAATCCTGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCTC
GTAGGCTTCGTGCTGGTGTTATGTTCGGGTTTTATAGCTCACAGGCCAAGTGTTAGTGAATTTGA
TAAAGTATATGACTACAAGATCCTATGCTAAGATGATCGTATTACACATTAAGTGATCCTGGTAT
GTGATAT
Found at i:68336450 original size:43 final size:44
Alignment explanation
Indices: 68336371--68336482 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 44
68336361 GATTATAAGT
* * *
68336371 AAGACCATGTCTTGGACATTGGCAT-TGTATTGTGATTACGTGC
1 AAGACCATGTCTAGGACATTGGCATCTGTATTATGATTACGTAC
* * *
68336414 AAGACCATGTCTGGGACATTGGCATCAT-TA-TATGATTTCGTAT
1 AAGACCATGTCTAGGACATTGGCATC-TGTATTATGATTACGTAC
* * *
68336457 AAGACCCTATCTAGGACAGTGGCATC
1 AAGACCATGTCTAGGACATTGGCATC
68336483 GATATGTGAT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
43 55 0.95
44 2 0.03
45 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (44 bp):
AAGACCATGTCTAGGACATTGGCATCTGTATTATGATTACGTAC
Found at i:68337560 original size:40 final size:40
Alignment explanation
Indices: 68337505--68337668 Score: 247
Period size: 40 Copynumber: 4.1 Consensus size: 40
68337495 CACCTGCATT
** *
68337505 AAGCCTGCAAGATTTAACCCGGATATCTATTACCAGCTCA
1 AAGCCTGCGGGATTTAACCCGGATATCTATTACCAGCACA
* * *
68337545 AAGCCTGTGGGATTTAACCTGGATATCTATTACTAGCACA
1 AAGCCTGCGGGATTTAACCCGGATATCTATTACCAGCACA
*
68337585 AAGCCTGCGAGATTTAACCCGGATATCTATTACCAGCACA
1 AAGCCTGCGGGATTTAACCCGGATATCTATTACCAGCACA
* *
68337625 AAGCCTGCGGGATTTAACACGGACATCTATTACCAGCACA
1 AAGCCTGCGGGATTTAACCCGGATATCTATTACCAGCACA
68337665 AAGC
1 AAGC
68337669 TTGCAGACTA
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (40 bp):
AAGCCTGCGGGATTTAACCCGGATATCTATTACCAGCACA
Found at i:68339103 original size:46 final size:46
Alignment explanation
Indices: 68339053--68339225 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
68339043 TGGTTGAGCA
* *
68339053 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
68339099 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
68339146 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
68339192 -CCCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
68339226 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 7 0.07
46 55 0.52
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68339209 original size:93 final size:93
Alignment explanation
Indices: 68339050--68339220 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
68339040 GGATGGTTGA
* *
68339050 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCCAACTCGTTGAGT
68339115 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
68339143 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCCAA-CTCGTTGAG
*
68339207 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
68339221 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68339487 original size:19 final size:20
Alignment explanation
Indices: 68339450--68339487 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68339440 ATAAGGTGGT
68339450 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68339470 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68339488 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68346503 original size:47 final size:47
Alignment explanation
Indices: 68346429--68346599 Score: 211
Period size: 47 Copynumber: 3.7 Consensus size: 47
68346419 GATGGTTGAG
*
68346429 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGC
1 CATCCGAACTCGTTGAGTTGAGCCCGAGTTCGTGAGATGTAACTAGC
* ** * * *
68346476 CATCCGAACTCGTTGAGTTGAGCCCGAGTTCAT-TTATGGATGCGA-C
1 CATCCGAACTCGTTGAGTTGAGCCCGAGTTCGTGAGATGTA-ACTAGC
** * * *
68346522 CGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGCCCGAGTTCGTGAGATGTAACTAGC
68346569 CATCCGAACTCGTTGAGTTGAGCCCGAGTTC
1 CATCCGAACTCGTTGAGTTGAGCCCGAGTTC
68346600 ATTTATGGAT
Statistics
Matches: 99, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 35 0.35
47 64 0.65
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (47 bp):
CATCCGAACTCGTTGAGTTGAGCCCGAGTTCGTGAGATGTAACTAGC
Found at i:68346549 original size:46 final size:46
Alignment explanation
Indices: 68346479--68346646 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
68346469 AACTAGCCAT
68346479 CCGAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGATGCGACCGC
1 CCGAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGATGCGACCGC
* * * * ** *
68346525 CCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGATGCGAC--CGC
*
68346570 ATCCGAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGATGCGACCGC
* *
68346618 CCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 CCGAACTCGTTGAGTTGAGCCCGAGTTCA
68346647 CTTAGGGGTG
Statistics
Matches: 98, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 53 0.54
47 26 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGATGCGACCGC
Found at i:68346596 original size:93 final size:93
Alignment explanation
Indices: 68346432--68346645 Score: 401
Period size: 93 Copynumber: 2.3 Consensus size: 93
68346422 GGTTGAGCAT
*
68346432 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGCCATCCGAACTCGTTGAGTTGA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGCCATCCGAACTCGTTGAGTTGA
*
68346497 GCCCGAGTTCATTTATGGATGCGACCGC
66 GCCCGAGTTCATTTATGGATGCGAACGC
*
68346525 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGCCATCCGAACTCGTTGAGTTGA
68346590 GCCCGAGTTCATTTATGGATGCGAACGC
66 GCCCGAGTTCATTTATGGATGCGAACGC
68346618 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
68346646 ACTTAGGGGT
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 118 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGCCATCCGAACTCGTTGAGTTGA
GCCCGAGTTCATTTATGGATGCGAACGC
Found at i:68346912 original size:19 final size:20
Alignment explanation
Indices: 68346875--68346912 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68346865 ATAAGGTGGT
68346875 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68346895 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68346913 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68352321 original size:45 final size:45
Alignment explanation
Indices: 68352257--68352345 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
68352247 TAGGTATGTC
*
68352257 TGAGTCTCGAACTCGTAACTGATAATAACCCGATCTCAAATCTAA
1 TGAGTCTCGAACTCGTAACTAATAATAACCCGATCTCAAATCTAA
68352302 TGAGTCTCGAACTCGTAACTAATAATAACCCGATCTCAAATCTA
1 TGAGTCTCGAACTCGTAACTAATAATAACCCGATCTCAAATCTA
68352346 TCTTTGAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (45 bp):
TGAGTCTCGAACTCGTAACTAATAATAACCCGATCTCAAATCTAA
Found at i:68353847 original size:65 final size:64
Alignment explanation
Indices: 68353767--68353891 Score: 196
Period size: 65 Copynumber: 1.9 Consensus size: 64
68353757 TTTTATCTTG
* *
68353767 GCTTAGATAAGCGGCTAAAAGAGAGCGTGGGTTAATATGTTGAGTTTGATTCATGATTTCAAACA
1 GCTTAGATAAGCGGCTAAAAGAGAGCGTGGGCTAATATGTTGAG-TTGAATCATGATTTCAAACA
* * *
68353832 GCTTAGATGATCGGCTAAAAGAGAGTGTGGGCTAATATGTTGAGTTGAATCATGATTTCA
1 GCTTAGATAAGCGGCTAAAAGAGAGCGTGGGCTAATATGTTGAGTTGAATCATGATTTCA
68353892 TATATATGTG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
64 15 0.27
65 40 0.73
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.31
Consensus pattern (64 bp):
GCTTAGATAAGCGGCTAAAAGAGAGCGTGGGCTAATATGTTGAGTTGAATCATGATTTCAAACA
Found at i:68354442 original size:40 final size:40
Alignment explanation
Indices: 68354387--68355351 Score: 1653
Period size: 40 Copynumber: 24.1 Consensus size: 40
68354377 CGGATGACAA
68354387 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354427 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354467 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354507 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354547 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354587 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354627 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354667 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354707 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354747 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354787 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354827 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354867 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354907 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354947 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68354987 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68355027 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
68355067 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
* * * *
68355107 CGAAGGCATTTGTGCTAGTG-CATGAATATTC-GG--ATGACAA
1 CGAAGGCATTTGTGCTAGTGAC-T-AAT-TCCGGGTTAAGTC-C
68355147 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
*
68355187 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
* * *
68355227 CGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGTTAAGTCC
* * *
68355267 CGAAGGCATTGGTGCGAGCT-ACT-ATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAG-TGACTAAT-TCCGGGTTAAGTCC
* * *
68355307 CGAAGGCATTTGAGCGAGT-AGCT-ATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCTAGTGA-CTAAT-TCCGGGTTAAGTCC
68355346 CGAAGG
1 CGAAGG
68355352 TACTTAGTTT
Statistics
Matches: 898, Mismatches: 16, Indels: 23
0.96 0.02 0.02
Matches are distributed among these distances:
38 2 0.00
39 27 0.03
40 857 0.95
41 10 0.01
42 2 0.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
Found at i:68363523 original size:40 final size:40
Alignment explanation
Indices: 68363468--68363589 Score: 201
Period size: 40 Copynumber: 3.0 Consensus size: 40
68363458 CGGATGACAA
*
68363468 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCC
68363508 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCC
* *
68363548 CGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCC
68363588 CG
1 CG
68363590 TCGGGCTAAG
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
39 2 0.03
40 76 0.97
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCC
Found at i:68363596 original size:15 final size:15
Alignment explanation
Indices: 68363576--68363604 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
68363566 TTACTATATC
68363576 CGGGCTAAGTCCCGT
1 CGGGCTAAGTCCCGT
68363591 CGGGCTAAGTCCCG
1 CGGGCTAAGTCCCG
68363605 AAGACATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.17
Consensus pattern (15 bp):
CGGGCTAAGTCCCGT
Found at i:68363635 original size:55 final size:55
Alignment explanation
Indices: 68363536--68363644 Score: 166
Period size: 55 Copynumber: 2.0 Consensus size: 55
68363526 TGACTAATTC
* *
68363536 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGT
1 CGGGCTAAGTCCCGAAGACATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGT
* *
68363591 CGGGCTAAGTCCCGAAGACATTTGTGCTAGTGACTA-ATTTCGGGCTAAGTCCCG
1 CGGGCTAAGTCCCGAAGACATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCG
68363645 AAGGGATTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 1 0.02
55 48 0.98
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (55 bp):
CGGGCTAAGTCCCGAAGACATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGT
Found at i:68363648 original size:135 final size:135
Alignment explanation
Indices: 68363468--68363724 Score: 433
Period size: 135 Copynumber: 1.9 Consensus size: 135
68363458 CGGATGACAA
* * *
68363468 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTAA
1 CGAAGACATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAA
*
68363533 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGTCGGGCTA
66 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGTCGGGCTA
68363598 AGTCC
131 AGTCC
* * * *
68363603 CGAAGACATTTGTGCTAGTGACTAATTTCGGGCTAAGTCCCGAAGGGATTTGTTCGAGTTACTAA
1 CGAAGACATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAA
*
68363668 ATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
66 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
68363725 AAGGCATTGG
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
135 113 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (135 bp):
CGAAGACATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGTCGGGCTA
AGTCC
Found at i:68363664 original size:95 final size:95
Alignment explanation
Indices: 68363496--68363681 Score: 318
Period size: 95 Copynumber: 2.0 Consensus size: 95
68363486 TGACTAATTC
* *
68363496 CGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGACATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
*
68363561 GCGAGTTACTATATCCGGGCTAAGTCCCGT
66 GCGAGTTACTAAATCCGGGCTAAGTCCCGT
* *
68363591 CGGGCTAAGTCCCGAAGACATTTGTGCTAGTGACTAATTTCGGGCTAAGTCCCGAAGGGATTTGT
1 CGGGCTAAGTCCCGAAGACATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
*
68363656 TCGAGTTACTAAATCCGGGCTAAGTC
66 GCGAGTTACTAAATCCGGGCTAAGTC
68363682 TCGAAGGCAT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 85 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (95 bp):
CGGGCTAAGTCCCGAAGACATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTAAATCCGGGCTAAGTCCCGT
Found at i:68363724 original size:80 final size:80
Alignment explanation
Indices: 68363591--68363774 Score: 253
Period size: 80 Copynumber: 2.3 Consensus size: 80
68363581 TAAGTCCCGT
* * * * *
68363591 CGGGCTAAGTCCCGAAGACATTTGTGCTAGTGACTAATTTCGGGCTAAGTCCCGAAGGGATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTGGT
* *
68363656 TCGAGTTACTAAATC
66 GCGAGCTACTAAATC
* *
68363671 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTGG
*
68363735 TGCGAGCTACTATATC
65 TGCGAGCTACTAAATC
*
68363751 TGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
68363775 AGTGAGTAGC
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 2 0.02
80 89 0.98
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGCTACTAAATC
Found at i:68363788 original size:40 final size:40
Alignment explanation
Indices: 68363592--68363807 Score: 226
Period size: 40 Copynumber: 5.4 Consensus size: 40
68363582 AAGTCCCGTC
* * *
68363592 GGGCTAAGTCCCGAAGACATTTGTGCT-AGTGACTA-ATTT
1 GGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATATCT
* * *
68363631 CGGGCTAAGTCCCGAAGGGATTTGT-TCGAGTTACTAAATCC
1 -GGGCTAAGTCCCGAAGGCATTTGTGT-GAGTTACTATATCT
* * *
68363672 GGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCT
* * *
68363712 GGGCTAAGTCCCGAAGGCATTGGTGCGAGCTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCT
*
68363752 GGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATATCT
* *
68363792 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
68363808 TACTTGGTTT
Statistics
Matches: 153, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 16 0.10
40 134 0.88
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCT
Found at i:68364330 original size:328 final size:328
Alignment explanation
Indices: 68363733--68364388 Score: 1215
Period size: 328 Copynumber: 2.0 Consensus size: 328
68363723 CGAAGGCATT
* * *
68363733 GGTGCGAGCTACTATATCTGGGCTAAGTCCCGAAGGCATTTGAGTGAGTAGCTATATCTGGTTAA
1 GGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAA
*
68363798 ATCCCGAAGGTACTTGGTTTGGGAATGAGCGACCTTGCTGTAATAATTTCAATTAATATGCTCGT
66 ATCCCGAAGGTACTTAGTTTGGGAATGAGCGACCTTGCTGTAATAATTTCAATTAATATGCTCGT
* *
68363863 AAAATCCCAATGATGAGGTATGTTTTGTATATGCATTGGATTAATTGATTCCTTTTAAATAGTAT
131 AAAATCCCAACGATGAGGTATGTTTCGTATATGCATTGGATTAATTGATTCCTTTTAAATAGTAT
68363928 TCGCTCAGTCGATTAATGAGCTTTCAGCTTTTGGTTAAGTTGATTTCTTATGTATGAGTATAAGG
196 TCGCTCAGTCGATTAATGAGCTTTCAGCTTTTGGTTAAGTTGATTTCTTATGTATGAGTATAAGG
68363993 GTTGGTAATGTGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCATA
261 GTTGGTAATGTGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCATA
68364058 TGA
326 TGA
68364061 GGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAA
1 GGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAA
*
68364126 ATCCCGAAGGTACTTAGTTTGGGAATGAGCGATCTTGCTGTAATAATTTCAATTAATATGCTCGT
66 ATCCCGAAGGTACTTAGTTTGGGAATGAGCGACCTTGCTGTAATAATTTCAATTAATATGCTCGT
68364191 AAAATCCCAACGATGAGGTATGTTTCGTATATGCATTGGATTAATTGATTCCTTTTAAATAGTAT
131 AAAATCCCAACGATGAGGTATGTTTCGTATATGCATTGGATTAATTGATTCCTTTTAAATAGTAT
*
68364256 TCGCTCAGTCGATTAATGAGC-TTCTGGCTTTTGGTTAAGTTGATTTCTTATGTATGAGTATAAG
196 TCGCTCAGTCGATTAATGAGCTTTC-AGCTTTTGGTTAAGTTGATTTCTTATGTATGAGTATAAG
*
68364320 GGTTGGTAATGTTAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCAT
260 GGTTGGTAATGTGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCAT
68364385 ATGA
325 ATGA
68364389 ATGCTATACT
Statistics
Matches: 318, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
327 3 0.01
328 315 0.99
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (328 bp):
GGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAA
ATCCCGAAGGTACTTAGTTTGGGAATGAGCGACCTTGCTGTAATAATTTCAATTAATATGCTCGT
AAAATCCCAACGATGAGGTATGTTTCGTATATGCATTGGATTAATTGATTCCTTTTAAATAGTAT
TCGCTCAGTCGATTAATGAGCTTTCAGCTTTTGGTTAAGTTGATTTCTTATGTATGAGTATAAGG
GTTGGTAATGTGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCATA
TGA
Done.