Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 210 of 276
Found at i:69745875 original size:20 final size:18
Alignment explanation
Indices: 69745841--69745888 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 18
69745831 TTGTAATGAG
*
69745841 AAAACAAAGAAAAGAAAAGA
1 AAAACAAA-AGAAGAAAA-A
69745861 AAAAGCAAAAGAAGAAAAA
1 AAAA-CAAAAGAAGAAAAA
69745880 AAAACAAAA
1 AAAACAAAA
69745889 TAAAAAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 5 0.19
19 5 0.19
20 12 0.46
21 4 0.15
ACGTcount: A:0.81, C:0.06, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAACAAAAGAAGAAAAA
Found at i:69747344 original size:22 final size:22
Alignment explanation
Indices: 69747316--69747361 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
69747306 GTGTTTAACC
69747316 TTCATCAAGTCACTAATTTGTT
1 TTCATCAAGTCACTAATTTGTT
69747338 TTCATCAAGTCACTAATTTGTT
1 TTCATCAAGTCACTAATTTGTT
69747360 TT
1 TT
69747362 ACTCTTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.48
Consensus pattern (22 bp):
TTCATCAAGTCACTAATTTGTT
Found at i:69750700 original size:28 final size:28
Alignment explanation
Indices: 69750656--69750747 Score: 166
Period size: 28 Copynumber: 3.3 Consensus size: 28
69750646 CGAGCGTGTG
69750656 GGCCCATTTGGACTGAGAATGGGCTTTA
1 GGCCCATTTGGACTGAGAATGGGCTTTA
* *
69750684 GGCCTATTTGGATTGAGAATGGGCTTTA
1 GGCCCATTTGGACTGAGAATGGGCTTTA
69750712 GGCCCATTTGGACTGAGAATGGGCTTTA
1 GGCCCATTTGGACTGAGAATGGGCTTTA
69750740 GGCCCATT
1 GGCCCATT
69750748 CGTATTGTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (28 bp):
GGCCCATTTGGACTGAGAATGGGCTTTA
Found at i:69750843 original size:27 final size:27
Alignment explanation
Indices: 69750811--69750883 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
69750801 CTCGACTTGT
*
69750811 AAAATTACCAAAGTACCCCCAATTTAC
1 AAAATTACCAAAATACCCCCAATTTAC
* *** ***
69750838 AGAATTACCATTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCCCAATTTAC
69750865 AAAATTACCAAAATACCCC
1 AAAATTACCAAAATACCCC
69750884 TATAAGGTAG
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.41, C:0.27, G:0.04, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCCAATTTAC
Found at i:69750897 original size:27 final size:27
Alignment explanation
Indices: 69750875--69751071 Score: 259
Period size: 27 Copynumber: 7.3 Consensus size: 27
69750865 AAAATTACCA
*
69750875 AAATACCCCTATAAGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACTG
* *
69750902 AAATACCCCTATAAGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACTG
* *
69750929 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACTG
* *
69750956 AAATACCCTTATAGGGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAATTACTG
*
69750983 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACTG
* * * *
69751010 AAATACCCTTGTAGGGTAGAAATACTA
1 AAATACCCCTATAGGGTAGAATTACTG
* *
69751037 AAATACCCCTGTAAGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACTG
*
69751064 AGATACCC
1 AAATACCC
69751072 TCGTGGGGTA
Statistics
Matches: 154, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAATTACTG
Found at i:69751081 original size:81 final size:81
Alignment explanation
Indices: 69750870--69751089 Score: 298
Period size: 81 Copynumber: 2.7 Consensus size: 81
69750860 TTTACAAAAT
* *
69750870 TACCAAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATAC
1 TACCAAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
*
69750935 CCTTATAGGGTAGAAT
66 CCTTATAGGGTAGAAA
* * * * *
69750951 TACCGAAATACCCTTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACTGAAATAC
1 TACCAAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
*
69751016 CCTTGTAGGGTAGAAA
66 CCTTATAGGGTAGAAA
* * * * *
69751032 TACTAAAATACCCCTGTAAGGTAGAATTACTGAGATA-CCCTCGTGGGGTAAAATTACC
1 TACCAAAATACCCCTATAAGGTAGAATTACTGAAATACCCCT-GTAGGGTAGAATTACC
69751090 ATTTTGCCCC
Statistics
Matches: 119, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 4 0.03
81 115 0.97
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (81 bp):
TACCAAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
CCTTATAGGGTAGAAA
Found at i:69751670 original size:27 final size:26
Alignment explanation
Indices: 69751639--69751714 Score: 89
Period size: 28 Copynumber: 2.8 Consensus size: 26
69751629 TTAGTAGCTT
* *
69751639 TGCCACATTATCTGATTCTGGTGGCTA
1 TGCCACAATATCTG-TTCTGGTGACTA
*
69751666 TGCCACAAATATCTGTATCTGGTGACTC
1 TGCCAC-AATATCTGT-TCTGGTGACTA
*
69751694 TGTCACAATATCTGTTCTGGT
1 TGCCACAATATCTGTTCTGGT
69751715 AGCCATGCTG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
26 6 0.14
27 16 0.37
28 21 0.49
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTA
Found at i:69751842 original size:6 final size:6
Alignment explanation
Indices: 69751831--69751893 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
69751821 TTGCATACAC
* * *
69751831 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
69751880 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
69751894 AATGTTTCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 2 0.04
6 39 0.85
7 4 0.09
8 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:69753965 original size:30 final size:31
Alignment explanation
Indices: 69753909--69753966 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
69753899 TGCCAAAGTT
*
69753909 CAAAAAACAAGCAAATTGGGCTAAATTGGAA
1 CAAAAAACAAGCAAAATGGGCTAAATTGGAA
*
69753940 CAAAAAGCAAG-AAAATGGGAC-AAATTG
1 CAAAAAACAAGCAAAATGGG-CTAAATTG
69753967 AAAAGTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.53, C:0.12, G:0.21, T:0.14
Consensus pattern (31 bp):
CAAAAAACAAGCAAAATGGGCTAAATTGGAA
Found at i:69762126 original size:48 final size:48
Alignment explanation
Indices: 69762065--69762395 Score: 358
Period size: 48 Copynumber: 6.9 Consensus size: 48
69762055 GGGTACATGT
* * *
69762065 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTATTGTTATGA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTATTATGA
* * * * * * * * *
69762113 GAGCTAGTGTAAGACCATGTCTGGGACATAGCACCAGCCTCAATATGT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTATTATGA
* *
69762161 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTATTATGA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTATTATGA
* * * * * * *
69762209 GCGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCAATATGT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTATTATGA
* *
69762257 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTAT-A
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTATTATGA
* * **
69762304 TGTGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACCAATGTATGA
1 -GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TTAT-TATGA
** *
69762355 GAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGACATT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATT
69762396 TTAACCTTTT
Statistics
Matches: 225, Mismatches: 54, Indels: 7
0.79 0.19 0.02
Matches are distributed among these distances:
48 186 0.83
49 1 0.00
50 37 0.16
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTATTATGA
Found at i:69762225 original size:96 final size:96
Alignment explanation
Indices: 69762061--69762395 Score: 478
Period size: 96 Copynumber: 3.5 Consensus size: 96
69762051 GTTAGGGTAC
*
69762061 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
* * *
69762126 ACCATGTCTGGGACATAGCACCAGCCTCAAT
66 ACCATGTTTGGGACATGGCATCAGCCTCAAT
* * *
69762157 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTATTATGAGCGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
69762222 ACCATGTTTGGGACATGGCATCAGCCTCAAT
66 ACCATGTTTGGGACATGGCATCAGCCTCAAT
*
69762253 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTAT-ATGTG-TCAGTGTA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA-GAGCT-AGTGTA
*
69762316 AGACCATGTTTGGGACATGGCATCGGCAC-CAATGT
64 AGACCATGTTTGGGACATGGCATCAGC-CTCAA--T
* ** * *
69762351 ATGAGAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGACATT
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
69762396 TTAACCTTTT
Statistics
Matches: 218, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
95 2 0.01
96 174 0.80
97 1 0.00
98 41 0.19
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
ACCATGTTTGGGACATGGCATCAGCCTCAAT
Found at i:69765745 original size:44 final size:43
Alignment explanation
Indices: 69765652--69765772 Score: 145
Period size: 44 Copynumber: 2.7 Consensus size: 43
69765642 AAAATTTGAA
* * *
69765652 CTCGTTGAGTTGGTTCGGGTTCGTGA-TATGTATGAAGCATCCGAG
1 CTCGTTGAGTTGGTCCGAGTT--T-ATTATGGATGAAGCATCCGAG
*
69765697 CTCGTTGAGTTGGTCCGAGTTTATTATGGATGAGAGCATTCGAG
1 CTCGTTGAGTTGGTCCGAGTTTATTATGGATGA-AGCATCCGAG
* *
69765741 CTCGTTGAGTTGGTCCTAGTTCATTATGGATG
1 CTCGTTGAGTTGGTCCGAGTTTATTATGGATG
69765773 CGATACATGT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 1 0.01
43 9 0.13
44 39 0.57
45 19 0.28
ACGTcount: A:0.18, C:0.15, G:0.31, T:0.36
Consensus pattern (43 bp):
CTCGTTGAGTTGGTCCGAGTTTATTATGGATGAAGCATCCGAG
Found at i:69769132 original size:79 final size:81
Alignment explanation
Indices: 69768996--69769180 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
69768986 TTGAATGATG
*
69768996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
69769060 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
69769075 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
69769137 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
69769155 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69769181 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:69769194 original size:40 final size:40
Alignment explanation
Indices: 69768997--69769180 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
69768987 TGAATGATGT
* * * *
69768997 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
69769037 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
69769077 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
69769115 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
69769156 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
69769181 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:69769202 original size:79 final size:79
Alignment explanation
Indices: 69768997--69769213 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
69768987 TGAATGATGT
** * * * **
69768997 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
69769060 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
69769077 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
69769142 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
69769156 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
69769214 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:69777066 original size:39 final size:40
Alignment explanation
Indices: 69776971--69777193 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
69776961 TTGAATGATG
*
69776971 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
69777009 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
69777050 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
69777089 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
69777128 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
69777167 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
69777194 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:69777157 original size:79 final size:81
Alignment explanation
Indices: 69776971--69777193 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
69776961 TTGAATGATG
* * *
69776971 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
69777033 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
69777050 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
69777111 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
69777128 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
69777192 TG
66 TG
69777194 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:69777215 original size:79 final size:79
Alignment explanation
Indices: 69776971--69777226 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
69776961 TTGAATGATG
* * * *
69776971 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
69777032 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
69777050 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
69777114 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
69777128 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
69777191 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
69777208 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
69777227 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:69780291 original size:79 final size:82
Alignment explanation
Indices: 69780180--69780364 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
69780170 GCTACTCGTT
* *
69780180 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
69780243 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
69780260 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
69780323 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
69780340 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69780365 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:69780364 original size:40 final size:40
Alignment explanation
Indices: 69780161--69780364 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
69780151 CGGAATTTAA
** *
69780161 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69780201 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69780241 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69780280 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69780320 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69780360 CCGGA
1 CCGGA
69780365 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69786847 original size:28 final size:29
Alignment explanation
Indices: 69786816--69786874 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
69786806 AAAGTGATTT
*
69786816 TTGACAAAAA-TGTCAATT-AGGGATTAAA
1 TTGA-AAAAAGTGTAAATTGAGGGATTAAA
*
69786844 TTGAAAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAAAAAAGTGTAAATTGAGGGATTAAA
69786873 TT
1 TT
69786875 ATGAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 5 0.19
28 11 0.41
29 11 0.41
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.31
Consensus pattern (29 bp):
TTGAAAAAAGTGTAAATTGAGGGATTAAA
Found at i:69813176 original size:47 final size:47
Alignment explanation
Indices: 69813123--69813510 Score: 564
Period size: 47 Copynumber: 8.3 Consensus size: 47
69813113 ATAATCCTTA
* * * * *
69813123 ACATATATACACCTTCACATCCATCACATCGGTCATTAGGTCTTATC
1 ACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
* *
69813170 TCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
* * * * *
69813217 ACATATATACACCTTCACATCCATCACATCGGTCATTAGGTCTTATC
1 ACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
*
69813264 TCATATATACACTTTCACATTCATCACATTGGCCATTCA-GCCTTATC
1 ACATATATACACTTTCACATTCATCACATTGGCCATT-AGGCCTTATC
* *
69813311 TCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
* *
69813358 ACATATATACACTTTCACATTCATCACGTTGGCCACTCAGG-CTTATC
1 ACATATATACACTTTCACATTCATCACATTGGCCA-TTAGGCCTTATC
*
69813405 ACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
*
69813452 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
*
69813499 ACATATACACAC
1 ACATATATACAC
69813511 CTTGTACATC
Statistics
Matches: 306, Mismatches: 31, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
46 3 0.01
47 299 0.98
48 4 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
ACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
Found at i:69819464 original size:68 final size:67
Alignment explanation
Indices: 69819392--69819541 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
69819382 CATCATGTGT
* * * *
69819392 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
69819454 ATGTAG
62 ATGTAG
** * *
69819460 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
69819525 AG
66 AG
69819527 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
69819542 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:69819497 original size:64 final size:64
Alignment explanation
Indices: 69819416--69819599 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
69819406 AGACATTATG
* *
69819416 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
69819480 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
69819545 AA
63 AA
* * * *
69819547 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
69819600 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:69834700 original size:40 final size:40
Alignment explanation
Indices: 69834655--69834780 Score: 100
Period size: 40 Copynumber: 3.1 Consensus size: 40
69834645 CACTTTATCA
69834655 CTCCTATTTACATTATAACATTTAATTTTATGCATATGAC
1 CTCCTATTTACATTATAACATTTAATTTTATGCATATGAC
* * * * * *
69834695 CTCCTATTAACATT-T---GTTTCACAATTTCTTCA-ATTTAC
1 CTCCTATTTACATTATAACATTT-A-ATTTTATGCATA-TGAC
* *
69834733 CATTCCCAATTACATTATAACATTTAATTTTATGCATATGAC
1 C--TCCTATTTACATTATAACATTTAATTTTATGCATATGAC
69834775 CTCCTA
1 CTCCTA
69834781 CTAACATTTT
Statistics
Matches: 61, Mismatches: 15, Indels: 20
0.64 0.16 0.21
Matches are distributed among these distances:
36 3 0.05
37 2 0.03
38 11 0.18
39 1 0.02
40 27 0.44
41 1 0.02
42 11 0.18
43 2 0.03
44 3 0.05
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.44
Consensus pattern (40 bp):
CTCCTATTTACATTATAACATTTAATTTTATGCATATGAC
Found at i:69839521 original size:53 final size:53
Alignment explanation
Indices: 69839464--69839564 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
69839454 TCTCATCCCT
69839464 ATTTTACCACT-AATAAAA-TTTTGAAAATTTTACCCTCAGTAAAATTTTTGACG
1 ATTTTACC-CTCAATAAAATTTTTGAAAATTTTACCCT-AGTAAAATTTTTGACG
** * **
69839517 ATTTTACCCTCGGTAAAATTTTTTATGATTTTACCCTAGTAAAATTTT
1 ATTTTACCCTCAATAAAATTTTTGAAAATTTTACCCTAGTAAAATTTT
69839565 GAGAAAATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.05
53 24 0.59
54 15 0.37
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.44
Consensus pattern (53 bp):
ATTTTACCCTCAATAAAATTTTTGAAAATTTTACCCTAGTAAAATTTTTGACG
Found at i:69839558 original size:26 final size:27
Alignment explanation
Indices: 69839464--69839564 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
69839454 TCTCATCCCT
* *
69839464 ATTTTACCACT-AATAAAA-TTTTGAAA
1 ATTTTACC-CTCAGTAAAATTTTTGAAG
*
69839490 ATTTTACCCTCAGTAAAATTTTTGACG
1 ATTTTACCCTCAGTAAAATTTTTGAAG
* * *
69839517 ATTTTACCCTCGGTAAAATTTTTTATG
1 ATTTTACCCTCAGTAAAATTTTTGAAG
69839544 ATTTTACCCT-AGTAAAATTTT
1 ATTTTACCCTCAGTAAAATTTT
69839565 GAGAAAATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
25 2 0.03
26 24 0.36
27 40 0.61
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTCAGTAAAATTTTTGAAG
Found at i:69839793 original size:9 final size:9
Alignment explanation
Indices: 69839779--69839828 Score: 55
Period size: 9 Copynumber: 5.0 Consensus size: 9
69839769 TTATCTTTTC
69839779 CTATTCATT
1 CTATTCATT
69839788 CTATTCATTT
1 CTATTCA-TT
69839798 CTATTCATACT
1 CTATTCAT--T
69839809 CGTAATTCATT
1 C-T-ATTCATT
69839820 CTATTCATT
1 CTATTCATT
69839829 TTTCCTATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
9 15 0.42
10 10 0.28
11 4 0.11
12 1 0.03
13 6 0.17
ACGTcount: A:0.24, C:0.22, G:0.02, T:0.52
Consensus pattern (9 bp):
CTATTCATT
Found at i:69842631 original size:21 final size:21
Alignment explanation
Indices: 69842597--69842636 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
69842587 AATGGTCATG
*
69842597 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
**
69842618 GATGATTTGCGAGTCACTT
1 GATGATTTAAGAGTCACTT
69842637 GTGTTTAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:69843174 original size:28 final size:28
Alignment explanation
Indices: 69843141--69843232 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
69843131 ATTGCATGAC
*
69843141 TATGAATGTGATTGGGTCAGATGGGCCA
1 TATGAATGTGATTGGGCCAGATGGGCCA
69843169 TATGAATGTGATTGGGCCAGATGGGCCA
1 TATGAATGTGATTGGGCCAGATGGGCCA
* *
69843197 TATGAATGAGATTGGGCCTAAATGGGCCA
1 TATGAATGTGATTGGGCC-AGATGGGCCA
*
69843226 AATGAAT
1 TATGAAT
69843233 AAGTATGGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 44 0.75
29 15 0.25
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCAGATGGGCCA
Found at i:69844497 original size:19 final size:19
Alignment explanation
Indices: 69844460--69844495 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
69844450 TATTTTAAAG
*
69844460 AAGGATTTTCAATGAAAAC
1 AAGGATTTTCAATAAAAAC
69844479 AAGG-TTTTCAATAAAAA
1 AAGGATTTTCAATAAAAA
69844496 ACTTCAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.50, C:0.08, G:0.14, T:0.28
Consensus pattern (19 bp):
AAGGATTTTCAATAAAAAC
Found at i:69846108 original size:15 final size:15
Alignment explanation
Indices: 69846088--69846135 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
69846078 GTAGATTACA
69846088 ACTCCACCAGCTCTT
1 ACTCCACCAGCTCTT
*
69846103 ACTCCACCAACTCTT
1 ACTCCACCAGCTCTT
* *
69846118 GCTCCACCAGCTCCT
1 ACTCCACCAGCTCTT
69846133 ACT
1 ACT
69846136 GAAACAACTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.21, C:0.48, G:0.06, T:0.25
Consensus pattern (15 bp):
ACTCCACCAGCTCTT
Found at i:69849017 original size:32 final size:31
Alignment explanation
Indices: 69848981--69849049 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 31
69848971 CAATCAAAGT
69848981 TATTAACA-AAAATTGAAATGAAAATTTCAAAA
1 TATTAACATAAAA-T-AAATGAAAATTTCAAAA
* *
69849013 TATTAGCATTAACATAAATGAAAATTTCAAAA
1 TATTAACA-TAAAATAAATGAAAATTTCAAAA
69849045 TATTA
1 TATTA
69849050 GCATTAACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 29 0.88
33 1 0.03
34 3 0.09
ACGTcount: A:0.55, C:0.07, G:0.06, T:0.32
Consensus pattern (31 bp):
TATTAACATAAAATAAATGAAAATTTCAAAA
Found at i:69849050 original size:32 final size:32
Alignment explanation
Indices: 69848996--69849059 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
69848986 ACAAAAATTG
69848996 AAATGAAAATTTCAAAATATTAGCATTAACAT
1 AAATGAAAATTTCAAAATATTAGCATTAACAT
69849028 AAATGAAAATTTCAAAATATTAGCATTAACAT
1 AAATGAAAATTTCAAAATATTAGCATTAACAT
69849060 TGTAAGTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.31
Consensus pattern (32 bp):
AAATGAAAATTTCAAAATATTAGCATTAACAT
Found at i:69861972 original size:15 final size:15
Alignment explanation
Indices: 69861952--69861993 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
69861942 GTTACTAAAT
*
69861952 ATAATAGTAATAGTA
1 ATAATAATAATAGTA
69861967 ATAATAATAATAGTA
1 ATAATAATAATAGTA
69861982 A-ATATAATAATA
1 ATA-ATAATAATA
69861994 AATAATGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 1 0.04
15 24 0.96
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (15 bp):
ATAATAATAATAGTA
Found at i:69863452 original size:19 final size:21
Alignment explanation
Indices: 69863407--69863460 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
69863397 AAATATTTTA
* *
69863407 AAAATATTTTCTACAACCGTT
1 AAAATATTTTTTACAACCGTG
69863428 AAAATATTTTTTACAA-C-TG
1 AAAATATTTTTTACAACCGTG
69863447 AAAATATTCTTTTA
1 AAAATATT-TTTTA
69863461 AATTACCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 9 0.30
20 6 0.20
21 15 0.50
ACGTcount: A:0.41, C:0.13, G:0.04, T:0.43
Consensus pattern (21 bp):
AAAATATTTTTTACAACCGTG
Found at i:69874372 original size:725 final size:725
Alignment explanation
Indices: 69872983--69874430 Score: 2842
Period size: 725 Copynumber: 2.0 Consensus size: 725
69872973 AAAGTTAAAA
69872983 ACATTCTTACAACGAGAAAACTAATGTCTAAGATGGCGGCTTTTGCGACTGCTAAAACATCTGCA
1 ACATTCTTACAACGAGAAAACTAATGTCTAAGATGGCGGCTTTTGCGACTGCTAAAACATCTGCA
69873048 TCATCTGCTGAAGCTGTAGCTCCAGGTCATTGTACTTTTTGCTCTGCTCTGCTGCCATCGCTGCT
66 TCATCTGCTGAAGCTGTAGCTCCAGGTCATTGTACTTTTTGCTCTGCTCTGCTGCCATCGCTGCT
*
69873113 GCCGCTGCCTCCCTCTCTGCTGCCTCTGCTCTAAGTTGTTGCTGGAGTTCTTCATATTTTCGTTG
131 GCCGCTGCCTCCCTCTCTGCTGCCTCTGCTCTAAGTTGTTGCTGGAGTTCTTCATATTTTCGCTG
69873178 AACCTCGGCAATTTGCTCAACCGTGTTCGCTTGCATCTGAGCTATCTGGTCTCTTAACCTCTGAA
196 AACCTCGGCAATTTGCTCAACCGTGTTCGCTTGCATCTGAGCTATCTGGTCTCTTAACCTCTGAA
69873243 CTTCAGGTTGAGCTTGACTTCTGGAAGGCATGTATTGCTGGGAGCCGGATCCAAAATATTGGGTT
261 CTTCAGGTTGAGCTTGACTTCTGGAAGGCATGTATTGCTGGGAGCCGGATCCAAAATATTGGGTT
69873308 GGGGTAACACCAGATCCTTGAAATCGAACCCGACCGTACCTTTCAGGACCCAAAACTTCAATGAT
326 GGGGTAACACCAGATCCTTGAAATCGAACCCGACCGTACCTTTCAGGACCCAAAACTTCAATGAT
69873373 AATTCTGTTATCAATGTTCTCAAGATTAACAGAACTATCAGTCAAAGCAATTGCTTCATATTCTG
391 AATTCTGTTATCAATGTTCTCAAGATTAACAGAACTATCAGTCAAAGCAATTGCTTCATATTCTG
69873438 CCTTCTTCTCCTTTAGTTTCTCCTAAAAAATCAATTAAAGAGTTAGAAACGAAATATATAATAAA
456 CCTTCTTCTCCTTTAGTTTCTCCTAAAAAATCAATTAAAGAGTTAGAAACGAAATATATAATAAA
69873503 AAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGAATTAAACAATTATA
521 AAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGAATTAAACAATTATA
*
69873568 ATTAAAGATTATAAATATTTAGAATAAATCAAATATTATTAAGTGAATATACCATAATTTCTCCA
586 ATTAAAGATTATAAATATTTAGAATAAATCAAATATTATTAAGTAAATATACCATAATTTCTCCA
* *
69873633 GCTTCGGATGTCATAGGAGATCTATCTTTCTTCCTATGTGTAATCTCAAAAAGCTGAAGGCGTCC
651 GCTTCGGATGTCATAGGAGATCCATCTTTCTTCCTATGCGTAATCTCAAAAAGCTGAAGGCGTCC
69873698 AACTTTTTGT
716 AACTTTTTGT
69873708 ACATTCTTACAACGAGAAAACTAATGTCTAAGATGGCGGCTTTTGCGACTGCTAAAACATCTGCA
1 ACATTCTTACAACGAGAAAACTAATGTCTAAGATGGCGGCTTTTGCGACTGCTAAAACATCTGCA
69873773 TCATCTGCTGAAGCTGTAGCTCCAGGTCATTGTACTTTTTGCTCTGCTCTGCTGCCATCGCTGCT
66 TCATCTGCTGAAGCTGTAGCTCCAGGTCATTGTACTTTTTGCTCTGCTCTGCTGCCATCGCTGCT
*
69873838 GCCGCTGCCTCCCTCTCTGCTGCCTCTGCTCTAAGTTGTTGCTGGAGTTCTTCATATTTTTGCTG
131 GCCGCTGCCTCCCTCTCTGCTGCCTCTGCTCTAAGTTGTTGCTGGAGTTCTTCATATTTTCGCTG
*
69873903 AACCTCGGTAATTTGCTCAACCGTGTTCGCTTGCATCTGAGCTATCTGGTCTCTTAACCTCTGAA
196 AACCTCGGCAATTTGCTCAACCGTGTTCGCTTGCATCTGAGCTATCTGGTCTCTTAACCTCTGAA
69873968 CTTCAGGTTGAGCTTGACTTCTGGAAGGCATGTATTGCTGGGAGCCGGATCCAAAATATTGGGTT
261 CTTCAGGTTGAGCTTGACTTCTGGAAGGCATGTATTGCTGGGAGCCGGATCCAAAATATTGGGTT
69874033 GGGGTAACACCAGATCCTTGAAATCGAACCCGACCGTACCTTTCAGGACCCAAAACTTCAATGAT
326 GGGGTAACACCAGATCCTTGAAATCGAACCCGACCGTACCTTTCAGGACCCAAAACTTCAATGAT
69874098 AATTCTGTTATCAATGTTCTCAAGATTAACAGAACTATCAGTCAAAGCAATTGCTTCATATTCTG
391 AATTCTGTTATCAATGTTCTCAAGATTAACAGAACTATCAGTCAAAGCAATTGCTTCATATTCTG
69874163 CCTTCTTCTCCTTTAGTTTCTCCTAAAAAATCAATTAAAGAGTTAGAAACGAAATATATAATAAA
456 CCTTCTTCTCCTTTAGTTTCTCCTAAAAAATCAATTAAAGAGTTAGAAACGAAATATATAATAAA
69874228 AAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGAATTAAACAATTATA
521 AAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGAATTAAACAATTATA
69874293 ATTAAAGATTATAAATATTTAGAATAAATCAAATATTATTAAGTAAATATACCATAATTTCTCCA
586 ATTAAAGATTATAAATATTTAGAATAAATCAAATATTATTAAGTAAATATACCATAATTTCTCCA
69874358 GCTTCGGATGTCATAGGAGATCCATCTTTCTTCCTATGCGTAATCTCAAAAAGCTGAAGGCGTCC
651 GCTTCGGATGTCATAGGAGATCCATCTTTCTTCCTATGCGTAATCTCAAAAAGCTGAAGGCGTCC
69874423 AACTTTTT
716 AACTTTTT
69874431 TTCCGGATTT
Statistics
Matches: 717, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
725 717 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (725 bp):
ACATTCTTACAACGAGAAAACTAATGTCTAAGATGGCGGCTTTTGCGACTGCTAAAACATCTGCA
TCATCTGCTGAAGCTGTAGCTCCAGGTCATTGTACTTTTTGCTCTGCTCTGCTGCCATCGCTGCT
GCCGCTGCCTCCCTCTCTGCTGCCTCTGCTCTAAGTTGTTGCTGGAGTTCTTCATATTTTCGCTG
AACCTCGGCAATTTGCTCAACCGTGTTCGCTTGCATCTGAGCTATCTGGTCTCTTAACCTCTGAA
CTTCAGGTTGAGCTTGACTTCTGGAAGGCATGTATTGCTGGGAGCCGGATCCAAAATATTGGGTT
GGGGTAACACCAGATCCTTGAAATCGAACCCGACCGTACCTTTCAGGACCCAAAACTTCAATGAT
AATTCTGTTATCAATGTTCTCAAGATTAACAGAACTATCAGTCAAAGCAATTGCTTCATATTCTG
CCTTCTTCTCCTTTAGTTTCTCCTAAAAAATCAATTAAAGAGTTAGAAACGAAATATATAATAAA
AAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGAATTAAACAATTATA
ATTAAAGATTATAAATATTTAGAATAAATCAAATATTATTAAGTAAATATACCATAATTTCTCCA
GCTTCGGATGTCATAGGAGATCCATCTTTCTTCCTATGCGTAATCTCAAAAAGCTGAAGGCGTCC
AACTTTTTGT
Found at i:69880107 original size:132 final size:132
Alignment explanation
Indices: 69879870--69880111 Score: 448
Period size: 132 Copynumber: 1.8 Consensus size: 132
69879860 AGTCAAAGTC
*
69879870 TCCCATGTTACAGGGATTAACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGAACA
1 TCCCATGTTACAGGGATCAACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGAACA
69879935 GAGCTTCAATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAGAACAGAGCTTCAATACTGA
66 GAGCTTCAATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAGAACAGAGCTTCAATACTGA
69880000 TG
131 TG
* *
69880002 TCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACA
1 TCCCATGTTACAGGGATCAACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGAACA
*
69880067 GAGCTTCAATACTGATTTCGTTTGTTTCTATAGAAACTAGACTCA
66 GAGCTTCAATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCA
69880112 AAGGGGAATC
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 106 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TCCCATGTTACAGGGATCAACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGAACA
GAGCTTCAATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAGAACAGAGCTTCAATACTGA
TG
Found at i:69880181 original size:68 final size:68
Alignment explanation
Indices: 69880072--69880207 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
69880062 GTACAGAGCT
*
69880072 TCAATACTGATTTCGTTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTGTGCACATATGGAA
1 TCAATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTGTGCACATATGGAA
69880137 TGA
66 TGA
69880140 TCAATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTGTGCACATATGGAA
1 TCAATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTGTGCACATATGGAA
69880205 TGA
66 TGA
69880208 CTTCTAATTA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (68 bp):
TCAATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTGTGCACATATGGAA
TGA
Found at i:69881374 original size:29 final size:27
Alignment explanation
Indices: 69881356--69881425 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
69881346 ATATTAAGTC
69881356 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
69881383 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
69881411 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
69881426 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:69881419 original size:28 final size:28
Alignment explanation
Indices: 69881356--69881453 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
69881346 ATATTAAGTC
*
69881356 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
69881383 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69881411 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
69881440 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69881454 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69884919 original size:6 final size:6
Alignment explanation
Indices: 69884901--69884984 Score: 64
Period size: 6 Copynumber: 13.7 Consensus size: 6
69884891 AAGAAACATT
* * * *
69884901 ATCAGA ATAAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
* *
69884950 ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGC ATCA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA
69884985 AGTAACAGAA
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
5 3 0.05
6 51 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:69884939 original size:31 final size:31
Alignment explanation
Indices: 69884901--69884995 Score: 127
Period size: 31 Copynumber: 3.1 Consensus size: 31
69884891 AAGAAACATT
* * *
69884901 ATCAGAATAAGAATCAGAATTAGGTGACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
*
69884932 ATCAGAATCAGAATCAGTATCAGGTAACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
* * *
69884963 ATCAAAATCAGAATCAGCATCAAGTAACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
69884994 AT
1 AT
69884996 AAAAAATTAG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 57 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGAATCAGGTAACAGA
Found at i:69885191 original size:27 final size:27
Alignment explanation
Indices: 69885151--69885215 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
69885141 AATAAGTTGA
* * *
69885151 GGCAAAGCCTCCAGTAT-AGATATTTGT
1 GGCAAAGCCACCAGAATCAGATA-ATGT
*
69885178 GGCATAGCCACCAGAATCAGATAATGT
1 GGCAAAGCCACCAGAATCAGATAATGT
69885205 GGCAAAGCCAC
1 GGCAAAGCCAC
69885216 TTAATAGAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
GGCAAAGCCACCAGAATCAGATAATGT
Found at i:69886463 original size:37 final size:37
Alignment explanation
Indices: 69886410--69886512 Score: 172
Period size: 37 Copynumber: 2.8 Consensus size: 37
69886400 CGAATAGTCC
*
69886410 CCACACGTAGTTATCGGGTCTTACCCAGG-CAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCC-GGACAAAATCT
*
69886447 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
69886484 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
69886513 ATATATTTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
36 2 0.03
37 61 0.97
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:69886711 original size:48 final size:48
Alignment explanation
Indices: 69886653--69887196 Score: 791
Period size: 48 Copynumber: 11.0 Consensus size: 48
69886643 ATATACACAG
* * *
69886653 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69886701 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
69886749 ATCTCATATATATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69886799 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
69886847 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69886897 ATCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69886945 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* ** *
69886993 ATCTCATATATATATTTCACATTAGCCATTCTTCTTTACCATATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
69887043 ATCTCATACATACCACATATACATATATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACAT-----AT-TTC--ACATTAGCCATTCGGCTTTACCACATATACAT
*
69887099 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69887147 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69887195 AT
1 AT
69887197 ATATTTATCT
Statistics
Matches: 457, Mismatches: 25, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
48 274 0.60
50 139 0.30
51 2 0.00
53 2 0.00
54 2 0.00
56 38 0.08
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:69886764 original size:98 final size:98
Alignment explanation
Indices: 69886659--69887196 Score: 805
Period size: 98 Copynumber: 5.4 Consensus size: 98
69886649 ACAGATCTCC
* * *
69886659 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
69886724 CCATTCGGCTTTACCACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACATATCTCATA
* * * *
69886757 TATATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
69886822 CCATTCGGCTTTACCACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACATATCTCATA
* *
69886855 TATATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
69886920 CCTTTCGGCTTTACCACATATACATATCTC--A
66 CCATTCGGCTTTACCACATATACATATCTCATA
*
69886951 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
** *
69887016 AGCCATTCTTCTTTACCATATATACATATCTCATACA
64 AGCCATTCGGCTTTACCACATATACATATCTCAT--A
* * * *
69887053 TACCACATATACATATATTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACA
1 TA-CATAT-TTC--ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
*
69887118 TTAGCCATTCGGCTTTACCACATATGCATATCTC--A
62 TTAGCCATTCGGCTTTACCACATATACATATCTCATA
69887153 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
69887197 ATATTTATCT
Statistics
Matches: 400, Mismatches: 30, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
96 78 0.19
98 228 0.57
99 4 0.01
100 3 0.01
102 3 0.01
103 4 0.01
104 45 0.11
106 35 0.09
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATA
Found at i:69886910 original size:146 final size:144
Alignment explanation
Indices: 69886653--69887196 Score: 791
Period size: 146 Copynumber: 3.7 Consensus size: 144
69886643 ATATACACAG
* * *
69886653 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * * *
69886718 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACACTAGCCATTCGAC
66 CATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGC
69886783 TTTACCACATATACAT
129 TTTACCACATATACAT
* *
69886799 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
* *
69886864 CACATTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCTTTCGGC
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
69886929 TTTACCACATATACAT
129 TTTACCACATATACAT
*
69886945 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
** * * *
69887010 CACATTAGCCATTCTTCTTTACCATATATACATATCTCATACATACCACATATACATATATTAGC
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT-----AT-TTC--ACATTAGC
*
69887075 CATTCGGCTTTACCACATATGCAT
121 CATTCGGCTTTACCACATATACAT
*
69887099 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
69887164 CATTAGCCATTCGGCTTTACCACATATACATAT
66 CATTAGCCATTCGGCTTTACCACATATACATAT
69887197 ATATTTATCT
Statistics
Matches: 363, Mismatches: 25, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
146 192 0.53
148 45 0.12
151 2 0.01
152 43 0.12
154 81 0.22
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (144 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
TACCACATATACAT
Found at i:69887157 original size:104 final size:105
Alignment explanation
Indices: 69886963--69887196 Score: 324
Period size: 104 Copynumber: 2.3 Consensus size: 105
69886953 CATATTTCAC
* **
69886963 ATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCTTCT
1 ATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATTAGCCATTCGGCT
*
69887028 TTACCATATATACATATCTCATACATACCACATATACATAT
65 TTACCACATATACATATCTCATACATACCACATATACATAT
*
69887069 ATTAGCCATTCGGCTTTACCACATATGCATATCTC-ATACATATTTCACATTAGCCATTCGGCTT
1 ATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTT
* * *
69887133 TACCACATATGCATATCTCATACAT-----AT-TTC--AC
66 TACCACATATACATATCTCATACATACCACATATACATAT
69887165 ATTAGCCATTCGGCTTTACCACATATACATAT
1 ATTAGCCATTCGGCTTTACCACATATACATAT
69887197 ATATTTATCT
Statistics
Matches: 119, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
96 32 0.27
98 2 0.02
99 2 0.02
104 49 0.41
106 34 0.29
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (105 bp):
ATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTT
TACCACATATACATATCTCATACATACCACATATACATAT
Found at i:69888795 original size:27 final size:27
Alignment explanation
Indices: 69888765--69889014 Score: 308
Period size: 27 Copynumber: 9.3 Consensus size: 27
69888755 GGGGTAAAAT
* * *
69888765 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69888792 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69888819 AGTAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
69888846 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69888873 AGTAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
69888900 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
69888927 GGTAACTCTACCCTACACGGTTA-TTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
69888953 AAGTAATTCTACCCTACAGGGGTATTTT
1 -GGTAATTCTACCCTACAAGGGTATTTC
*
69888981 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69889008 AGTAATT
1 GGTAATT
69889015 TCACAAATCA
Statistics
Matches: 191, Mismatches: 26, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
26 7 0.04
27 178 0.93
28 6 0.03
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:69888812 original size:54 final size:54
Alignment explanation
Indices: 69888765--69889014 Score: 344
Period size: 54 Copynumber: 4.6 Consensus size: 54
69888755 GGGGTAAAAT
* * *
69888765 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
69888819 AGTAATTCTACCCTAC-AGGAGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
69888873 AGTAATTCTACCCTAC-AGGAGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
69888927 GGTAACTCTACCCTACACGGTTA-TTCAAGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC-GGTAATTCTACCCTACAGGGGTATTTC
* *
69888981 GATAATTCTACCCTACAAGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
69889015 TCACAAATCA
Statistics
Matches: 178, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
53 6 0.03
54 167 0.94
55 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:69888905 original size:81 final size:80
Alignment explanation
Indices: 69888765--69889014 Score: 340
Period size: 81 Copynumber: 3.1 Consensus size: 80
69888755 GGGGTAAAAT
* * * * *
69888765 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
69888830 CCTACAGGAGTATTTC
66 CCTACAGG-GTATTTC
* *
69888846 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGAGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
69888911 CCTACAGGGGTATTTC
66 CCTACA-GGGTATTTC
* * * * *
69888927 GGTAACTCTACCCTACACGGTTA-TTCAAGTAATTCTACCCTACAGGGGTATTTTGATAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
69888991 CCCTACAAGGGTATTTC
65 CCCTAC-AGGGTATTTC
*
69889008 AGTAATT
1 GGTAATT
69889015 TCACAAATCA
Statistics
Matches: 151, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
80 3 0.02
81 145 0.96
82 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (80 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
CCTACAGGGTATTTC
Found at i:69889029 original size:27 final size:27
Alignment explanation
Indices: 69888999--69889231 Score: 313
Period size: 27 Copynumber: 8.6 Consensus size: 27
69888989 TACCCTACAA
** * *
69888999 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69889026 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69889053 GGGTATTCTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
69889080 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
69889107 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
69889134 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
69889161 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69889188 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
69889215 GGTTATTTTGATAATTT
1 GGGTATTTTGGTAATTT
69889232 GGTAAACTAA
Statistics
Matches: 178, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 178 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:69889041 original size:54 final size:54
Alignment explanation
Indices: 69888764--69889095 Score: 338
Period size: 54 Copynumber: 6.1 Consensus size: 54
69888754 AGGGGTAAAA
* * *
69888764 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
**
69888818 CAGTAATTCTACCCTAC-AGGAGTATTTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTT
**
69888872 CAGTAATTCTACCCTAC-AGGAGTATTTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTT
* * * * *
69888926 CGGTAACTCTACCCTACACGGTTA-TTCAAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTC-GGTAATTCTACCCTACAGGGGTATTT
* * **
69888980 TGATAATTCTACCCTACAAGGGTATTTCAGTAATT-T-CACAAATCAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC-CCTA-CAGGGGTATTT
* ** * **
69889034 TGGTAATTTTA-CAAACCAAGGGTA-TTCTGGTAATTTTA-CAAACCAGGGGTATTT
1 TGGTAATTCTACCCTA-CAAGGGTATTTC-GGTAATTCTACCCTA-CAGGGGTATTT
69889088 TGGTAATT
1 TGGTAATT
69889096 TTACAAACCA
Statistics
Matches: 245, Mismatches: 23, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
52 1 0.00
53 14 0.06
54 224 0.91
55 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:69889057 original size:81 final size:80
Alignment explanation
Indices: 69888972--69889231 Score: 317
Period size: 81 Copynumber: 3.2 Consensus size: 80
69888962 TACCCTACAG
* ** * ** * *
69888972 GGGTATTTTGATAATTCTACCCTACAAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGG
1 GGGTATTTTGATAATTTTA-CAAACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
69889037 TAATTTTACAAACCAA
65 TAATTTTACAAACCAA
* *
69889053 GGGTATTCTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGATAATTTTACAAA-CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
* *
69889118 TGATTTTATAAACCAA
65 TAATTTTACAAACCAA
* * * *
69889134 GGGTATTTT-AGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTA
1 GGGTATTTTGA-TAATTTTACAAAC-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
69889198 GTAATTTTACAAACC-A
64 GTAATTTTACAAACCAA
69889214 GGGTTATTTTGATAATTT
1 GGG-TATTTTGATAATTT
69889232 GGTAAACTAA
Statistics
Matches: 154, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
80 7 0.05
81 146 0.95
82 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (80 bp):
GGGTATTTTGATAATTTTACAAACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGT
AATTTTACAAACCAA
Found at i:69889096 original size:54 final size:54
Alignment explanation
Indices: 69888969--69889231 Score: 305
Period size: 54 Copynumber: 4.9 Consensus size: 54
69888959 TTCTACCCTA
* * ** ** * *
69888969 CAGGGGTATTTTGATAATTCTACCCTA-CAAGGGTATTTCAGTAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTA-CAAACCAAGGGTATTTTGGTAATTTTACAAAC
*
69889023 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * *
69889077 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * * * * *
69889131 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * *
69889185 CAAGGGTATTTTAGTAATTTTACAAACC-AGGGTTATTTTGATAATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGG-TATTTTGGTAATTT
69889232 GGTAAACTAA
Statistics
Matches: 187, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
53 5 0.03
54 182 0.97
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
Found at i:69889238 original size:27 final size:27
Alignment explanation
Indices: 69888969--69889231 Score: 264
Period size: 27 Copynumber: 9.7 Consensus size: 27
69888959 TTCTACCCTA
* **
69888969 CAGGGGTATTTTGATAATTCTACCCTA-
1 CAGGGGTATTTTGATAATTTTA-CAAAC
* * * *
69888996 CAAGGGTA-TTTCAGTAATTTCACAAAT
1 CAGGGGTATTTTGA-TAATTTTACAAAC
*
69889023 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGATAATTTTACAAAC
* * *
69889050 CAAGGGTATTCTGGTAATTTTACAAAC
1 CAGGGGTATTTTGATAATTTTACAAAC
*
69889077 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGATAATTTTACAAAC
* * *
69889104 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGATAATTTTACAAAC
*
69889131 CAAGGGTATTTT-AGTAATTTTACAAAC
1 CAGGGGTATTTTGA-TAATTTTACAAAC
* * * *
69889158 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGATAATTTTACAAAC
*
69889185 CAAGGGTATTTT-AGTAATTTTACAAAC
1 CAGGGGTATTTTGA-TAATTTTACAAAC
*
69889212 CAGGGTTATTTTGATAATTT
1 CAGGGGTATTTTGATAATTT
69889232 GGTAAACTAA
Statistics
Matches: 196, Mismatches: 33, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
26 6 0.03
27 186 0.95
28 4 0.02
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTTGATAATTTTACAAAC
Found at i:69896307 original size:29 final size:29
Alignment explanation
Indices: 69896269--69896350 Score: 121
Period size: 29 Copynumber: 2.9 Consensus size: 29
69896259 CGAAAATAAT
*
69896269 GATAT-CATGGCCTAAAGCCAAATTAGCA
1 GATATGCATGGCCTAAAGCCAAATCAGCA
* *
69896297 GATATGCATGGCCTGAAGCCAAATCAGCC
1 GATATGCATGGCCTAAAGCCAAATCAGCA
*
69896326 GATATGCATGGCCCAAAGCCAAATC
1 GATATGCATGGCCTAAAGCCAAATC
69896351 GGTATAACTC
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 5 0.10
29 43 0.90
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.18
Consensus pattern (29 bp):
GATATGCATGGCCTAAAGCCAAATCAGCA
Found at i:69897399 original size:21 final size:21
Alignment explanation
Indices: 69897375--69897418 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
69897365 TACATTAAGG
69897375 TTCCATAACTATTTAACACCT
1 TTCCATAACTATTTAACACCT
69897396 TTCCATAACTATTTAACACCT
1 TTCCATAACTATTTAACACCT
69897417 TT
1 TT
69897419 AACATATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.27, G:0.00, T:0.41
Consensus pattern (21 bp):
TTCCATAACTATTTAACACCT
Found at i:69903755 original size:29 final size:29
Alignment explanation
Indices: 69903720--69903793 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
69903710 GTTGTGAGAT
* *
69903720 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
69903749 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
69903778 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69903794 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:69905812 original size:19 final size:19
Alignment explanation
Indices: 69905788--69905831 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
69905778 TGGCTCGCCA
*
69905788 TTCATCTAGTTCGTTCAGC
1 TTCATCTAGTTCGCTCAGC
69905807 TTCATCTAGTTCGCTCAGC
1 TTCATCTAGTTCGCTCAGC
*
69905826 TGCATC
1 TTCATC
69905832 AACCTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.16, C:0.30, G:0.16, T:0.39
Consensus pattern (19 bp):
TTCATCTAGTTCGCTCAGC
Found at i:69913568 original size:15 final size:14
Alignment explanation
Indices: 69913544--69913575 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
69913534 TAAAGAATTA
69913544 AGGACAAAACAAAG
1 AGGACAAAACAAAG
69913558 AGGAGCAAAACAAAG
1 AGGA-CAAAACAAAG
69913573 AGG
1 AGG
69913576 TCACAAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.59, C:0.12, G:0.28, T:0.00
Consensus pattern (14 bp):
AGGACAAAACAAAG
Found at i:69914019 original size:4 final size:4
Alignment explanation
Indices: 69914012--69914045 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
69914002 AATCAATCAA
* *
69914012 TCAT TCAT TCAT TCAT CCAT TCAT TCAC TCAT TC
1 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TC
69914046 GATCATTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (4 bp):
TCAT
Found at i:69916773 original size:46 final size:45
Alignment explanation
Indices: 69916717--69916808 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 45
69916707 GAGCCATGTA
69916717 ACACGACGCTTGTCTGGGCCAAATAGGAAACTCCTATGAGTTTAG
1 ACACGACGCTTGTCTGGGCCAAATAGGAAACTCCTATGAGTTTAG
69916762 ANCACGACGCTTGTCTGGGCCAAATAGGAAACTCCTATGAGTTTAG
1 A-CACGACGCTTGTCTGGGCCAAATAGGAAACTCCTATGAGTTTAG
69916808 A
1 A
69916809 ACAGGAAGCT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 1 0.02
46 45 0.98
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (45 bp):
ACACGACGCTTGTCTGGGCCAAATAGGAAACTCCTATGAGTTTAG
Found at i:69922241 original size:27 final size:28
Alignment explanation
Indices: 69922188--69922242 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
69922178 TACATACATG
*
69922188 CATATGGCCCACTTAGCCCAATCTCATT
1 CATATGGCCCACTTAGCCCAATATCATT
69922216 CATATGGCCCA-TTAGGCCCAA-ATCATT
1 CATATGGCCCACTTA-GCCCAATATCATT
69922243 TTTATAAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 8 0.32
28 17 0.68
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (28 bp):
CATATGGCCCACTTAGCCCAATATCATT
Found at i:69931657 original size:29 final size:29
Alignment explanation
Indices: 69931624--69931698 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
69931614 AATCTCATTT
*
69931624 ATATGGCCCATCAGGCCGAATTCAC-ATTC
1 ATATGGCCCATTAGGCCGAATTC-CTATTC
* * *
69931653 GTATGGCCCATTGGGCCTAATTCCTATTC
1 ATATGGCCCATTAGGCCGAATTCCTATTC
69931682 ATATGGCCCATTAGGCC
1 ATATGGCCCATTAGGCC
69931699 CAAATAACCT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCGAATTCCTATTC
Found at i:69931714 original size:29 final size:29
Alignment explanation
Indices: 69931682--69931742 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
69931672 ATTCCTATTC
*
69931682 ATATGGCCCATTAGGCCCAAATAACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* *
69931711 ATATGGCCCGTTAGGCCTAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
69931739 ATAT
1 ATAT
69931743 TCATGCTCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:69932814 original size:22 final size:23
Alignment explanation
Indices: 69932780--69932826 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
69932770 TTTGTGCTGA
69932780 TTTCTATTCTTTCACTACACAAT
1 TTTCTATTCTTTCACTACACAAT
*
69932803 TTTCT-TTGTTTCACTACACAAT
1 TTTCTATTCTTTCACTACACAAT
69932825 TT
1 TT
69932827 GAACCTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.51
Consensus pattern (23 bp):
TTTCTATTCTTTCACTACACAAT
Found at i:69938720 original size:79 final size:81
Alignment explanation
Indices: 69938618--69938801 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
69938608 GCTCCTCGTT
* *
69938618 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
69938680 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
69938698 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
69938762 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
69938778 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69938802 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:69938735 original size:39 final size:41
Alignment explanation
Indices: 69938618--69938801 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
69938608 GCTCCTCGTT
* *
69938618 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
69938658 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
69938698 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
69938737 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
69938778 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69938802 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:69940680 original size:67 final size:67
Alignment explanation
Indices: 69940597--69940726 Score: 251
Period size: 67 Copynumber: 1.9 Consensus size: 67
69940587 CATTCATGAT
69940597 TACATATTCTAGACAATAAATATCACATTCAAACATTTCGGTGACTCGGTTTAACGGTCCCGATA
1 TACATATTCTAGACAATAAATATCACATTCAAACATTTCGGTGACTCGGTTTAACGGTCCCGATA
69940662 TA
66 TA
*
69940664 TACATATTCTAGACAATAAATATCACATTCAAACATTTCGGTGACTCGGTTTAGCGGTCCCGA
1 TACATATTCTAGACAATAAATATCACATTCAAACATTTCGGTGACTCGGTTTAACGGTCCCGA
69940727 AACCACTTCC
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31
Consensus pattern (67 bp):
TACATATTCTAGACAATAAATATCACATTCAAACATTTCGGTGACTCGGTTTAACGGTCCCGATA
TA
Found at i:69944132 original size:27 final size:26
Alignment explanation
Indices: 69944101--69944186 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
69944091 GCTGCCAAAA
* *
69944101 ACAGTAAATATGGCAAAGCCACCAGT
1 ACAGTAAATGTGGCATAGCCACCAGT
* *
69944127 ATCAGTAATTGTGGCATAGCCACTAGT
1 A-CAGTAAATGTGGCATAGCCACCAGT
* *
69944154 AACAGTAAATGTGACATAGTCACCAGT
1 -ACAGTAAATGTGGCATAGCCACCAGT
69944181 ACAGTA
1 ACAGTA
69944187 TTCCCTCCAT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.14
27 42 0.84
28 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
ACAGTAAATGTGGCATAGCCACCAGT
Found at i:69944353 original size:27 final size:27
Alignment explanation
Indices: 69944322--69944510 Score: 211
Period size: 27 Copynumber: 7.0 Consensus size: 27
69944312 GGGCATAATC
* * *
69944322 GTCATTTTACCTTACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
69944349 ATCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
69944376 GTCATTTCACCCTATAGGGACATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
69944403 GTCATTTTATCCTAC-GGAGGCATTACG
1 GTCATTTTACCCTACAGG-GGCATTACG
* * *
69944430 GTCATTTTATCCTACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* **
69944457 GTCATTTTACCCTACAGGGGTATTATA
1 GTCATTTTACCCTACAGGGGCATTACG
*
69944484 GTCA-TTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
69944510 G
1 G
69944511 CTGTTTACCT
Statistics
Matches: 140, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
26 21 0.15
27 117 0.84
28 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:69944488 original size:81 final size:79
Alignment explanation
Indices: 69944322--69944559 Score: 196
Period size: 81 Copynumber: 3.0 Consensus size: 79
69944312 GGGCATAATC
* * * * * * * * *
69944322 GTCATTTTACCTTACAGGGGTATTATGATCATTTTACCCTATAGGGGCATTACGGTCATTTCACC
1 GTCA-TTTACCCTACAAGGGCATTACGGTCATTTTA-CCTACAGGGGTATTATGGTCATTTTACC
* ** *
69944387 CTATAGGGACATTACG
64 CTACAGGGGTATTACA
* *
69944403 GTCATTTTATCCTAC-GGAGGCATTACGGTCATTTTATCCTACAGGGGTATTATGGTCATTTTAC
1 GTCA-TTTACCCTACAAG-GGCATTACGGTCATTTTA-CCTACAGGGGTATTATGGTCATTTTAC
*
69944467 CCTACAGGGGTATTATA
63 CCTACAGGGGTATTACA
* * * *
69944484 GTCATTTACCCTACAAGGGCATTACGG-C-TGTTTACCTTACAAGGATATTATGATCATTTTACA
1 GTCATTTACCCTACAAGGGCATTACGGTCAT-TTTACC-TACAGGGGTATTATGGTCATTTTACC
69944547 CTACCA-GGGTATT
64 CTA-CAGGGGTATT
69944560 TCGGTAATTT
Statistics
Matches: 131, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.02
79 37 0.28
80 23 0.18
81 68 0.52
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (79 bp):
GTCATTTACCCTACAAGGGCATTACGGTCATTTTACCTACAGGGGTATTATGGTCATTTTACCCT
ACAGGGGTATTACA
Found at i:69944559 original size:27 final size:26
Alignment explanation
Indices: 69944431--69944559 Score: 72
Period size: 27 Copynumber: 4.8 Consensus size: 26
69944421 GGCATTACGG
*
69944431 TCATTTTATCCTA-CAGGGGTATTATGG
1 TCATTTTA-CCTACCA-GGGTATTATGA
69944458 TCATTTTACCCTA-CAGGGGTATTAT-A
1 TCATTTTA-CCTACCA-GGGTATTATGA
* * *
69944484 GTCA-TTTACCCTACAAGGGCATTACG-
1 -TCATTTTA-CCTACCAGGGTATTATGA
* * *
69944510 GC-TGTTTACCTTACAAGGATATTATGA
1 TCAT-TTTACC-TACCAGGGTATTATGA
69944537 TCATTTTACACTACCAGGGTATT
1 TCATTTTAC-CTACCAGGGTATT
69944560 TCGGTAATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
25 3 0.04
26 32 0.40
27 44 0.54
28 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (26 bp):
TCATTTTACCTACCAGGGTATTATGA
Found at i:69944656 original size:27 final size:27
Alignment explanation
Indices: 69944553--69944758 Score: 200
Period size: 27 Copynumber: 7.6 Consensus size: 27
69944543 TACACTACCA
*
69944553 GGGTATTTCGGTAATTTTACGAA-CTGG
1 GGGTATTTCGGTAATTTTACAAATC-GG
* *
69944580 AGGTATTTCGGTAATTTTCCAAA-CTGG
1 GGGTATTTCGGTAATTTTACAAATC-GG
* *
69944607 GGGTATTTCGATAATTTTGCAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGG
* * * *
69944634 GGGTATTTTGGTAATTTTCCAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGG
** * * *
69944661 GGGTATTTTTGTAATTTTATAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGG
*
69944688 GGGTATTTCGATAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGG
* * **
69944715 GGGCATTTCGGTAATTTCACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATCGG
*
69944742 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
69944759 CAACCCGGGG
Statistics
Matches: 151, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 150 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGG
Found at i:69944675 original size:81 final size:81
Alignment explanation
Indices: 69944553--69944758 Score: 247
Period size: 81 Copynumber: 2.5 Consensus size: 81
69944543 TACACTACCA
* * * * * *
69944553 GGGTATTTCGGTAATTTTACGAACTG-GAGGTATTTCGGTAATTTTCCAAACTGGGGGTATTTCG
1 GGGTATTTCGGTAATTTTCCAAATTGAG-GGTATTTCAGTAATTTTACAAACTGAGGGTATTTCG
*
69944617 ATAATTTTGCAAATCGG
65 ATAATTTTACAAATCGG
* ** * *
69944634 GGGTATTTTGGTAATTTTCCAAATTGAGGGTATTTTTGTAATTTTATAAATTGAGGGTATTTCGA
1 GGGTATTTCGGTAATTTTCCAAATTGAGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGA
69944699 TAATTTTACAAATCGG
66 TAATTTTACAAATCGG
*
69944715 GGGCATTTCGGTAA-TTTCACAAATT-AGGGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTTTC-CAAATTGA-GGGTATTTCAGTAATTT
69944759 CAACCCGGGG
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
80 5 0.05
81 101 0.94
82 1 0.01
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTCCAAATTGAGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGA
TAATTTTACAAATCGG
Found at i:69948014 original size:32 final size:32
Alignment explanation
Indices: 69947946--69948014 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 32
69947936 TTTAGAGGTT
* ** * * *
69947946 GATTAATACAAATCCTTGAAGAAATTAATATT
1 GATTAATACAAACCCTCAAAGAAAGTAAGATA
*
69947978 GATTAATACAAACCCTCAAAGAAAGTAGGATA
1 GATTAATACAAACCCTCAAAGAAAGTAAGATA
69948010 GATTA
1 GATTA
69948015 GAAATTTATA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.28
Consensus pattern (32 bp):
GATTAATACAAACCCTCAAAGAAAGTAAGATA
Found at i:69949189 original size:20 final size:19
Alignment explanation
Indices: 69949157--69949204 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
69949147 TAATAAATTT
*
69949157 AAAAAATA-TTTGAAAATA
1 AAAAAATATTTTGAAAAGA
*
69949175 AAAAAATATTGTTGACAAGA
1 AAAAAATATT-TTGAAAAGA
69949195 AAAATAATAT
1 AAAA-AATAT
69949205 AATATTGGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 8 0.32
19 1 0.04
20 11 0.44
21 5 0.20
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (19 bp):
AAAAAATATTTTGAAAAGA
Found at i:69952366 original size:17 final size:16
Alignment explanation
Indices: 69952330--69952368 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
69952320 TAATTGTTTA
*
69952330 TTATGTATTTTTAATTT
1 TTAT-TATTTTTAATAT
69952347 TTATTATTTTTAATAAT
1 TTATTATTTTTAAT-AT
69952364 TTATT
1 TTATT
69952369 TAATTGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (16 bp):
TTATTATTTTTAATAT
Found at i:69954700 original size:43 final size:43
Alignment explanation
Indices: 69954424--69954709 Score: 242
Period size: 43 Copynumber: 6.7 Consensus size: 43
69954414 TGAGATATCA
** * *
69954424 TGTAAGACCTTGTCTAGGACAGTGGGATCGATATATGATTTCG
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATATGATTTCG
* *
69954467 TGTAAGACC-CTGTCTAGGACAATGGCATCGATATATGATTTCG
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATATATGATTTCG
* *
69954510 TGTAAGACTACGTTTGGGAC-GTTGGCATCGATATATGATTTCG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGATATATGATTTCG
* *
69954553 TGGAAGACCACGTCTGGGAC-GTTGGCATCGATTTGA-GATTTTCG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGATAT-ATGA-TTTCG
** *** * * * *
69954597 TGTAAGACCATATCTAATACATTGACATCG-TATTTAATTTCG
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATATGATTTCG
** * * *
69954639 TGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATATGATTTCG
* *
69954682 TGTAAGACCACATTTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
69954710 TGTACGAGTT
Statistics
Matches: 198, Mismatches: 36, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.15
43 141 0.71
44 28 0.14
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATATGATTTCG
Found at i:69958484 original size:19 final size:19
Alignment explanation
Indices: 69958460--69958500 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
69958450 GTACATGTGT
69958460 ATGTGTGTGTAATCAAATG
1 ATGTGTGTGTAATCAAATG
*
69958479 ATGTGTGTGTAGTCAAATG
1 ATGTGTGTGTAATCAAATG
69958498 ATG
1 ATG
69958501 CTTGTCATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.37
Consensus pattern (19 bp):
ATGTGTGTGTAATCAAATG
Found at i:69959715 original size:19 final size:20
Alignment explanation
Indices: 69959691--69959728 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
69959681 GAGGTGGGAT
*
69959691 GGGAAAGTAAAAA-TTTTAG
1 GGGAAAATAAAAAGTTTTAG
69959710 GGGAAAATAAAAAGTTTTA
1 GGGAAAATAAAAAGTTTTA
69959729 AGGGTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (20 bp):
GGGAAAATAAAAAGTTTTAG
Found at i:69959944 original size:9 final size:9
Alignment explanation
Indices: 69959930--69959967 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
69959920 TATAGTTTGA
69959930 TATTCGAAT
1 TATTCGAAT
69959939 TATTCGAAT
1 TATTCGAAT
* *
69959948 TATTTGAGT
1 TATTCGAAT
69959957 TATTCGAAT
1 TATTCGAAT
69959966 TA
1 TA
69959968 AAAAACTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.47
Consensus pattern (9 bp):
TATTCGAAT
Found at i:69962727 original size:8 final size:8
Alignment explanation
Indices: 69962714--69962740 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
69962704 ATCTGTTCTG
69962714 ATATGTGC
1 ATATGTGC
69962722 ATATGTGC
1 ATATGTGC
69962730 ATATGTGC
1 ATATGTGC
69962738 ATA
1 ATA
69962741 ATTCCGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (8 bp):
ATATGTGC
Found at i:69966066 original size:93 final size:93
Alignment explanation
Indices: 69965959--69966129 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
69965949 GCCCCTAATT
* * *
69965959 GAACTCGGACTCAACTCAACGAGCTCGGGA-GTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTAAACGAGCTC-GAACATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
69966023 ATGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
69966052 GAACTCGGACTCAACTAAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
69966117 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69966130 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTAAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69966119 original size:46 final size:46
Alignment explanation
Indices: 69965952--69966126 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
69965942 GTAACCCGCC
* * * *
69965952 CCTAATTGAACTCGGACTCAACTCAACGAGCTCGGGA-GTTCACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGAACATTCACAT
* *
69965997 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--AC-A-TTCACAT
* * * *
69966047 -CTCA-CGAACTCGGACTCAACTAAACGAGTTC-GAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGAACATTCACAT
69966090 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69966127 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.55
47 26 0.25
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGAACATTCACAT
Found at i:69973643 original size:93 final size:93
Alignment explanation
Indices: 69973536--69973984 Score: 429
Period size: 93 Copynumber: 4.8 Consensus size: 93
69973526 GCCCCTAATT
* *
69973536 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
69973601 CGAGTTCGGATGCCTAGTTACATCTCA-C
66 CGAGTTCGGATGCC-AGTTACATCTAAGC
* ** * *
69973629 GAACTCGGACTCAACTAAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* * *
69973694 CGAGCTCGG--G-C-GTTCGCATCCATAAGT
66 CGAGTTCGGATGCCAGTT-ACAT-C-TAAGC
* * * *
69973721 GAACTCGGACTCAACTCGACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTCGGACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCATAAGTGAACTCGGACTCAA
* * * * ** *
69973782 CTAAACGAGTTCGAACATTCCCG---CCCCTAAGT
61 CTCAACGAGTTCG--GATGCCAGTTACATCTAAGC
* *
69973814 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
69973879 CGAGTTCGGATGCCTAGTTACATCTCA-C
66 CGAGTTCGGATGCC-AGTTACATCTAAGC
* ** * *
69973907 GAACTCGGACTCAACTAAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69973972 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69973985 TCAACCATCC
Statistics
Matches: 287, Mismatches: 46, Indels: 46
0.76 0.12 0.12
Matches are distributed among these distances:
88 6 0.02
89 6 0.02
90 8 0.03
91 7 0.02
92 50 0.17
93 193 0.67
94 7 0.02
95 3 0.01
96 3 0.01
97 2 0.01
98 1 0.00
99 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCAGTTACATCTAAGC
Found at i:69974000 original size:139 final size:139
Alignment explanation
Indices: 69973535--69973980 Score: 847
Period size: 139 Copynumber: 3.2 Consensus size: 139
69973525 CGCCCCTAAT
69973535 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCG
69973600 ACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTAAACGAGTTCGAACATTCGC
66 ACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTAAACGAGTTCGAACATTCGC
69973665 ATCCGTAAG
131 ATCCGTAAG
69973674 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCG
*
69973739 ACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTAAACGAGTTCGAACATTCCC
66 ACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTAAACGAGTTCGAACATTCGC
** *
69973804 GCCCCTAAG
131 ATCCGTAAG
69973813 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCG
69973878 ACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTAAACGAGTTCGAACATTCGC
66 ACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTAAACGAGTTCGAACATTCGC
69973943 ATCCGTAAG
131 ATCCGTAAG
*
69973952 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGCTCGG
69973981 ATGCTCAACC
Statistics
Matches: 298, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 298 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (139 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCG
ACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTAAACGAGTTCGAACATTCGC
ATCCGTAAG
Found at i:69975589 original size:7 final size:7
Alignment explanation
Indices: 69975577--69975611 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
69975567 ATGGTATGTG
69975577 ATTCGTA
1 ATTCGTA
69975584 ATTCGTA
1 ATTCGTA
*
69975591 ATTTGTA
1 ATTCGTA
*
69975598 ATTTGTA
1 ATTCGTA
69975605 ATTCGTA
1 ATTCGTA
69975612 TTATAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.49
Consensus pattern (7 bp):
ATTCGTA
Found at i:69981556 original size:12 final size:12
Alignment explanation
Indices: 69981539--69981572 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
69981529 CAACCCGTCC
69981539 ATATTAATTTTT
1 ATATTAATTTTT
*
69981551 ATATTATTTTTT
1 ATATTAATTTTT
69981563 ATA-TAATTTT
1 ATATTAATTTT
69981573 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:69981814 original size:22 final size:22
Alignment explanation
Indices: 69981788--69981836 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
69981778 ATATCCAAAC
69981788 AATAACAACAAAATAGTAGCAA
1 AATAACAACAAAATAGTAGCAA
* * **
69981810 CATAATAGTAAAATAGTAGCAA
1 AATAACAACAAAATAGTAGCAA
69981832 AATAA
1 AATAA
69981837 GGAGAAAACA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.18
Consensus pattern (22 bp):
AATAACAACAAAATAGTAGCAA
Found at i:69981835 original size:11 final size:11
Alignment explanation
Indices: 69981796--69981835 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
69981786 ACAATAACAA
69981796 CAAAATAGTAG
1 CAAAATAGTAG
* *
69981807 CAACATAATAG
1 CAAAATAGTAG
*
69981818 TAAAATAGTAG
1 CAAAATAGTAG
69981829 CAAAATA
1 CAAAATA
69981836 AGGAGAAAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:69992480 original size:48 final size:45
Alignment explanation
Indices: 69992386--69992595 Score: 167
Period size: 46 Copynumber: 4.6 Consensus size: 45
69992376 TCACTTGTGT
* * * * *
69992386 GAGCTAGTGTAAGATATGTCTGAGACATGCATCGGC-CACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTC-GA-GATGA
* *
69992432 GAGCCAGTGTAAGACCATGTCTGGGACACGGCATCGGCATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGC-TCGAGATGA
* * * *
69992480 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACTTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCTCGAGA-TGA
**
69992527 -AGATAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGA
* * *
69992570 GTGTCAGTGTAAGACCATCTCTGGGA
1 GAGCCAGTGTAAGA-CATGTCTGGGA
69992596 TATGACATTG
Statistics
Matches: 135, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 58 0.43
47 28 0.21
48 24 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGA
Found at i:69993664 original size:28 final size:28
Alignment explanation
Indices: 69993633--69993688 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
69993623 GGACATAGGT
69993633 GTGTCATGGCCGTGTGAAGGACACGGGC
1 GTGTCATGGCCGTGTGAAGGACACGGGC
*
69993661 GTGTCATGGCCGTGTGAAGGACATGGGC
1 GTGTCATGGCCGTGTGAAGGACACGGGC
69993689 CAGGCACACG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.20, G:0.43, T:0.20
Consensus pattern (28 bp):
GTGTCATGGCCGTGTGAAGGACACGGGC
Found at i:70000038 original size:55 final size:55
Alignment explanation
Indices: 69999969--70000078 Score: 152
Period size: 55 Copynumber: 2.0 Consensus size: 55
69999959 GTTACTTTAA
* *
69999969 CAGGTTCGACCACGGGTGTTCCACACGAGG-ATGTCAT-ACGCCCGTGTTGTTTTGG
1 CAGGCTCGACCACGGGTCTTCCACAC-AGGCATGTC-TCACGCCCGTGTTGTTTTGG
* *
70000024 CAGGCTCGCCCACGGTTCTTCCACACAGGCATGTCTCACGCCCGTGTTGTTTTGG
1 CAGGCTCGACCACGGGTCTTCCACACAGGCATGTCTCACGCCCGTGTTGTTTTGG
70000079 TAAGCTTGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 4 0.08
55 45 0.92
ACGTcount: A:0.15, C:0.30, G:0.28, T:0.27
Consensus pattern (55 bp):
CAGGCTCGACCACGGGTCTTCCACACAGGCATGTCTCACGCCCGTGTTGTTTTGG
Found at i:70000093 original size:55 final size:55
Alignment explanation
Indices: 69999974--70000093 Score: 145
Period size: 55 Copynumber: 2.2 Consensus size: 55
69999964 TTTAACAGGT
* * *
69999974 TCGACCACGGGTGTTCCACACGAGGATGTCATACGCCCGTGTTGTTTTGGCAGGC
1 TCGACCACGGTTCTTCCACACGAGGATGTCATACGCCCGTGTTGTTTTGGCAAGC
* *
70000029 TCGCCCACGGTTCTTCCACAC-AGGCATGTC-TCACGCCCGTGTTGTTTTGGTAAGC
1 TCGACCACGGTTCTTCCACACGAGG-ATGTCAT-ACGCCCGTGTTGTTTTGGCAAGC
* *
70000084 TTGATCACGG
1 TCGACCACGG
70000094 CCATATCGCA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
54 4 0.07
55 51 0.93
ACGTcount: A:0.16, C:0.29, G:0.28, T:0.28
Consensus pattern (55 bp):
TCGACCACGGTTCTTCCACACGAGGATGTCATACGCCCGTGTTGTTTTGGCAAGC
Found at i:70011049 original size:46 final size:45
Alignment explanation
Indices: 70010984--70011164 Score: 156
Period size: 46 Copynumber: 4.0 Consensus size: 45
70010974 ACATTTGGGT
*
70010984 CACA-TGTGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGA
1 CACATTGTGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGA
* *
70011028 CCACATTGTGAGAGCCAGTGTAAGACATGTCTGGGACACGGCATC-A
1 -CACATTGTGAGAGCTAGTGTAAGACATGTCTGGGACA-TGCATCGA
* * * *
70011074 -GCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGG
1 CACATTGTGA-GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGA
* * * *
70011121 C-C-TCGAGACGTAAGATAGTGTAAGACATGTGTGGGACATGCATC
1 CACATTGTGA-G--AGCTAGTGTAAGACATGTCTGGGACATGCATC
70011165 AGCTACAAGA
Statistics
Matches: 114, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
44 7 0.06
45 6 0.05
46 71 0.62
47 29 0.25
48 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
CACATTGTGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGA
Found at i:70011156 original size:93 final size:90
Alignment explanation
Indices: 70010995--70011213 Score: 230
Period size: 93 Copynumber: 2.4 Consensus size: 90
70010985 ACATGTGTGA
* ** *
70010995 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTGTGAGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACGTGAGAGACAGTGTAAGACATGTCT
* *
70011060 GGGACACGGCATCAGCATTGAGACGA-GT
66 GGGACA-GGCATCAGC--T-ACAAGATGT
* * *
70011088 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGT-A-AGATAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ACGTGAGAGACAGTGTAAGACATGT
* *
70011151 GTGGGACATGCATCAGCTACAAGATGT
64 CTGGGACAGGCATCAGCTACAAGATGT
70011178 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
70011214 ATAGATATAC
Statistics
Matches: 108, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
89 5 0.05
90 13 0.12
91 13 0.12
92 16 0.15
93 57 0.53
94 2 0.02
95 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (90 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACGTGAGAGACAGTGTAAGACATGTCT
GGGACAGGCATCAGCTACAAGATGT
Found at i:70027549 original size:26 final size:26
Alignment explanation
Indices: 70027518--70027569 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
70027508 ATAAGCGTTG
70027518 AATGGAACTA-CGGCATAAGTAGAGTA
1 AATGGAA-TAGCGGCATAAGTAGAGTA
* *
70027544 AATGGAATAGCGGCATGAGTGGAGTA
1 AATGGAATAGCGGCATAAGTAGAGTA
70027570 GGGAAAAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.38, C:0.10, G:0.33, T:0.19
Consensus pattern (26 bp):
AATGGAATAGCGGCATAAGTAGAGTA
Found at i:70027757 original size:20 final size:19
Alignment explanation
Indices: 70027714--70027757 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
70027704 CTAAGGAGAA
* **
70027714 GAGGGAAGAACGCGATTCT
1 GAGGGAAGAACGCAATGAT
70027733 GAGGGAAGAACGGCAATGAT
1 GAGGGAAGAAC-GCAATGAT
70027753 GAGGG
1 GAGGG
70027758 TTTGGGGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.34, C:0.11, G:0.43, T:0.11
Consensus pattern (19 bp):
GAGGGAAGAACGCAATGAT
Found at i:70031619 original size:19 final size:19
Alignment explanation
Indices: 70031595--70031634 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
70031585 ATTTTTTTTT
*
70031595 TTAATAAAAAAAAGTTAGG
1 TTAATAAAAAAAACTTAGG
*
70031614 TTAATAAAAAACACTTAGG
1 TTAATAAAAAAAACTTAGG
70031633 TT
1 TT
70031635 GCCTTCCGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (19 bp):
TTAATAAAAAAAACTTAGG
Found at i:70032172 original size:24 final size:24
Alignment explanation
Indices: 70032144--70032213 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
70032134 TGGTCTTTTG
70032144 TTAAATATTGCACATACATAGTTA
1 TTAAATATTGCACATACATAGTTA
*
70032168 TT-AA-ATT--A-AT-CA-A-TTG
1 TTAAATATTGCACATACATAGTTA
70032184 TTAAATATTGCACATACATAGTTA
1 TTAAATATTGCACATACATAGTTA
70032208 TTAAAT
1 TTAAAT
70032214 TAATCAATCT
Statistics
Matches: 36, Mismatches: 2, Indels: 16
0.67 0.04 0.30
Matches are distributed among these distances:
16 4 0.11
17 3 0.08
18 5 0.14
19 2 0.06
20 2 0.06
21 2 0.06
22 5 0.14
23 3 0.08
24 10 0.28
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (24 bp):
TTAAATATTGCACATACATAGTTA
Found at i:70032196 original size:40 final size:40
Alignment explanation
Indices: 70032141--70032221 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
70032131 ACTTGGTCTT
70032141 TTGTTAAATATTGCACATACATAGTTATTAAATTAATCAA
1 TTGTTAAATATTGCACATACATAGTTATTAAATTAATCAA
70032181 TTGTTAAATATTGCACATACATAGTTATTAAATTAATCAA
1 TTGTTAAATATTGCACATACATAGTTATTAAATTAATCAA
70032221 T
1 T
70032222 CTTTCAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (40 bp):
TTGTTAAATATTGCACATACATAGTTATTAAATTAATCAA
Found at i:70032207 original size:21 final size:21
Alignment explanation
Indices: 70032143--70032207 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
70032133 TTGGTCTTTT
70032143 GTTAAATATTGCACATACATA
1 GTTAAATATTGCACATACATA
*
70032164 GTTATTAA-ATT--A-AT-CAATT
1 GTTA--AATATTGCACATAC-ATA
70032183 GTTAAATATTGCACATACATA
1 GTTAAATATTGCACATACATA
70032204 GTTA
1 GTTA
70032208 TTAAATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
17 2 0.06
18 4 0.12
19 8 0.24
20 2 0.06
21 12 0.35
22 4 0.12
23 2 0.06
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (21 bp):
GTTAAATATTGCACATACATA
Found at i:70038498 original size:13 final size:15
Alignment explanation
Indices: 70038470--70038502 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
70038460 CAAACAAAAG
70038470 AAAAATTAGAATTTA
1 AAAAATTAGAATTTA
70038485 AAAAATTA-AA-TTA
1 AAAAATTAGAATTTA
70038498 AAAAA
1 AAAAA
70038503 AATATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 2 0.11
15 8 0.44
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AAAAATTAGAATTTA
Found at i:70038505 original size:15 final size:15
Alignment explanation
Indices: 70038470--70038503 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
70038460 CAAACAAAAG
*
70038470 AAAAATTAGAATTTA
1 AAAAATTAGAATTAA
70038485 AAAAATTA-AATTAA
1 AAAAATTAGAATTAA
70038499 AAAAA
1 AAAAA
70038504 ATATTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
AAAAATTAGAATTAA
Found at i:70038509 original size:17 final size:16
Alignment explanation
Indices: 70038484--70038523 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
70038474 ATTAGAATTT
*
70038484 AAAAAATTAAATTAAA
1 AAAAAATTAAAATAAA
70038500 AAAAATATTAAAATAAA
1 AAAAA-ATTAAAATAAA
70038517 AATAAAA
1 AA-AAAA
70038524 AAGGCTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 5 0.24
17 13 0.62
18 3 0.14
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAAATTAAAATAAA
Found at i:70040779 original size:150 final size:152
Alignment explanation
Indices: 70040578--70040888 Score: 583
Period size: 153 Copynumber: 2.1 Consensus size: 152
70040568 AATTAAATAA
70040578 TGAA-AGGGAATATGATGAAAACAAAAAAAGTGTGTGGTTGTTTCT-CCCCCCCCATTTTGCCGA
1 TGAAGAGGGAATATGATGAAAACAAAAAAAGTGTGTGGTTGTTTCTCCCCCCCCCATTTTGCCGA
70040641 AACTAGAAAGAAAAACAAAAAAAAAAGTGCTCATCCTTTGGTTCATCCTTGGCC-AAAAATTTTA
66 AACTAGAAAGAAAAACAAAAAAAAAAGTGCTCATCCTTTGGTTCATCCTTGGCCAAAAAATTTTA
70040705 AGGAGGAAGGAAGAAGAAAGGT
131 AGGAGGAAGGAAGAAGAAAGGT
70040727 TGAAGAGGGAATATGATGAAAACAAAAAAAGTGTGTGGTTGTTTCTCCCCCCCCCCCATTTTGCC
1 TGAAGAGGGAATATGATGAAAACAAAAAAAGTGTGTGGTTGTTTCT--CCCCCCCCCATTTTGCC
70040792 GAAACTAGAAAGAAAAACAAAAAAAAAAGTGCTCATCCTTTGGTTCATCCTTGGCCAAAAAATTT
64 GAAACTAGAAAGAAAAACAAAAAAAAAAGTGCTCATCCTTTGGTTCATCCTTGGCCAAAAAATTT
70040857 TAAGGAGGAAGGAAGAAGAAAGGT
129 TAAGGAGGAAGGAAGAAGAAAGGT
70040881 TGAAGAGG
1 TGAAGAGG
70040889 TTCGGCCATG
Statistics
Matches: 157, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
149 4 0.03
150 41 0.26
153 72 0.46
154 40 0.25
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (152 bp):
TGAAGAGGGAATATGATGAAAACAAAAAAAGTGTGTGGTTGTTTCTCCCCCCCCCATTTTGCCGA
AACTAGAAAGAAAAACAAAAAAAAAAGTGCTCATCCTTTGGTTCATCCTTGGCCAAAAAATTTTA
AGGAGGAAGGAAGAAGAAAGGT
Found at i:70042301 original size:40 final size:40
Alignment explanation
Indices: 70041983--70042287 Score: 438
Period size: 40 Copynumber: 7.7 Consensus size: 40
70041973 TTGAATGATG
* * * * *
70041983 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
70042023 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70042063 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70042102 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70042142 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70042182 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70042222 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
70042263 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
70042288 AACGAGGAGC
Statistics
Matches: 245, Mismatches: 15, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
39 34 0.14
40 201 0.82
41 10 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70047917 original size:46 final size:44
Alignment explanation
Indices: 70047786--70047954 Score: 153
Period size: 46 Copynumber: 3.7 Consensus size: 44
70047776 ATTGTGAGCT
* * * *
70047786 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAATGA-GTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG--A-GACGTGCC
* *
70047834 AGTGTAAGGCATGTTTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGT--GCC
* **
70047880 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGTGTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTGCC
70047924 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
70047955 ACACAGATAT
Statistics
Matches: 104, Mismatches: 11, Indels: 14
0.81 0.09 0.11
Matches are distributed among these distances:
43 2 0.02
44 13 0.12
45 16 0.15
46 52 0.50
47 13 0.12
48 8 0.08
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTGCC
Found at i:70055184 original size:46 final size:42
Alignment explanation
Indices: 70055097--70055214 Score: 121
Period size: 46 Copynumber: 2.6 Consensus size: 42
70055087 TTGAAAAAAG
* * *
70055097 TGCTAGTGTAAGGCATGTCTAGGACATACATCAGCCTCGAGACA
1 TGCTAGTGTAAGACATGTCTGGGACATACATCAGCCACGAG--A
*
70055141 TAAGCTAGTGTAAGACATGTCTGGGACATACAT-TGCCCACGAGA
1 T--GCTAGTGTAAGACATGTCTGGGACATACATCAG-CCACGAGA
70055185 TGTCTCAGTGTAAGACCATGTCTGGGACAT
1 TG-CT-AGTGTAAGA-CATGTCTGGGACAT
70055215 TGCATCGGCA
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
42 1 0.02
43 2 0.03
44 12 0.19
45 15 0.23
46 34 0.53
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (42 bp):
TGCTAGTGTAAGACATGTCTGGGACATACATCAGCCACGAGA
Found at i:70065297 original size:47 final size:47
Alignment explanation
Indices: 70065228--70065400 Score: 210
Period size: 47 Copynumber: 3.7 Consensus size: 47
70065218 GGGTAAGGTT
*
70065228 TCGATGCCATGTCCCAGACATGGTTTTACACTGGCTTATATCTCAAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAG
* *
70065275 TCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT-ATCTC-AAG
* * * **
70065323 CCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TATATCTCAA-G
70065369 TCGATGCCATGTCCCAGACATGGTCTTACACT
1 TCGATGCCATGTCCCAGACATGGTCTTACACT
70065401 AGCTCTCATA
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
45 1 0.01
46 24 0.22
47 64 0.60
48 18 0.17
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (47 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAG
Found at i:70065396 original size:94 final size:93
Alignment explanation
Indices: 70065235--70065449 Score: 283
Period size: 94 Copynumber: 2.3 Consensus size: 93
70065225 GTTTCGATGC
* * **
70065235 CATGTCCCAGACATGGTTTTACACTGGCT-TATATCTCAAGTCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAAGTCGATGCCATGTCCCAGACATGGT
* *
70065299 CTTACACT-GACTATCAT-CTCGTAGCCGATG
64 CTTACACTAG-CTATCATAAT-GTAGCCGATA
*
70065329 CATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA-GTCGATGCCATGTCCCAGACATGGTC
* *
70065394 TTACACTAGCTCTCATAATGTGGCCGATA
65 TTACACTAGCTATCATAATGTAGCCGATA
70065423 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
70065450 CAACCATAAC
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
93 18 0.17
94 87 0.81
95 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAGTCGATGCCATGTCCCAGACATGGTCT
TACACTAGCTATCATAATGTAGCCGATA
Found at i:70065427 original size:47 final size:45
Alignment explanation
Indices: 70065282--70065449 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 45
70065272 AAGTCGATGC
* * *
70065282 CATGTCCCAGACATGGTCTTACACT-GACTATCAT-CTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATAAT-GT-GCCGATA
* * *
70065329 CATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATGT--CGATGC
1 CATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AATGTGCCGAT-A
70065376 CATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATA
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGT-GCCGATA
70065423 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
70065450 CAACCATAAC
Statistics
Matches: 103, Mismatches: 8, Indels: 21
0.78 0.06 0.16
Matches are distributed among these distances:
45 5 0.05
46 32 0.31
47 41 0.40
48 22 0.21
49 2 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGCCGATA
Found at i:70070725 original size:31 final size:31
Alignment explanation
Indices: 70070681--70070797 Score: 173
Period size: 31 Copynumber: 3.8 Consensus size: 31
70070671 TCAATCTCAG
70070681 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
70070711 CATATCACTAGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
70070742 CATATCACTGAGCCGAAGCCTTTTCACTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
70070773 CATATCATTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
70070798 TGTAACAATA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 5 0.06
31 73 0.94
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:70071103 original size:20 final size:20
Alignment explanation
Indices: 70071080--70071128 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
70071070 CATTATGAAT
70071080 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
70071100 ATATCATGTGCATGTCATAC
1 ATATCATGTGCATATCATAC
70071120 ATATCATGT
1 ATATCATGT
70071129 ATATCAGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:70077506 original size:53 final size:53
Alignment explanation
Indices: 70077325--70077579 Score: 254
Period size: 55 Copynumber: 4.8 Consensus size: 53
70077315 ATTAGGGTTT
* *
70077325 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA-TTGGTAA-G-TTCATAAGGC
* * * *
70077380 AAGGAAATCACGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
70077435 AAAGG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGGTAAGTTCATAAGGC
* *
70077488 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TTAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
* * ** *
70077537 AAGGATACCATGTAAGACAATGACAAGTGATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
70077580 GTATCCGCGT
Statistics
Matches: 171, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
49 39 0.23
52 9 0.05
53 43 0.25
54 9 0.05
55 67 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:70077531 original size:108 final size:110
Alignment explanation
Indices: 70077332--70077532 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
70077322 TTTAAGGATA
*
70077332 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGAAATCACGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGAAACCACGTAAGA
*
70077397 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
70077442 CCATGTAAGACCATGCTAAGGCATGGCA-TTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTC-TAAGGCAAGGAAACCACGTAAG
*
70077504 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
70077533 TTAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 6 0.07
110 27 0.33
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGAAACCACGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:70081367 original size:12 final size:12
Alignment explanation
Indices: 70081350--70081375 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70081340 CACACGCCCA
70081350 TGTGCTAGGCTG
1 TGTGCTAGGCTG
70081362 TGTGCTAGGCTG
1 TGTGCTAGGCTG
70081374 TG
1 TG
70081376 CCAAAACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.42, T:0.35
Consensus pattern (12 bp):
TGTGCTAGGCTG
Done.