Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 213 of 276
Found at i:70738066 original size:33 final size:33
Alignment explanation
Indices: 70738022--70738181 Score: 230
Period size: 33 Copynumber: 4.8 Consensus size: 33
70738012 CGAGCGGTAC
* *
70738022 ACACAAGGTATACCTTTCCTTTTCATATGATAT
1 ACACAAAGTATACCTTTCCTTTTCAAATGATAT
* * *
70738055 GCACAAAGTATACCTTTCCTTTTCATATGGTAT
1 ACACAAAGTATACCTTTCCTTTTCAAATGATAT
** *
70738088 ACACAAAGTATACCTAACCTTTTCAAATGGTAT
1 ACACAAAGTATACCTTTCCTTTTCAAATGATAT
*
70738121 ACACAAAGTATACATTTCCTTTTCAAATGATAT
1 ACACAAAGTATACCTTTCCTTTTCAAATGATAT
*
70738154 ACACAAAGTATACCTTTCCTTTCCAAAT
1 ACACAAAGTATACCTTTCCTTTTCAAAT
70738182 TTGATAGTCG
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 114 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (33 bp):
ACACAAAGTATACCTTTCCTTTTCAAATGATAT
Found at i:70738222 original size:29 final size:29
Alignment explanation
Indices: 70738190--70738420 Score: 185
Period size: 29 Copynumber: 7.8 Consensus size: 29
70738180 ATTTGATAGT
70738190 CGAAGCTATCCCTTTTCACATTCAGTAGC
1 CGAAGCTATCCCTTTTCACATTCAGTAGC
70738219 CGAAGCTATCCCTTTTCACATTC-GATAGC
1 CGAAGCTATCCCTTTTCACATTCAG-TAGC
* *
70738248 TGAAGCTATCCCTTTTCACATT-TGATAGC
1 CGAAGCTATCCCTTTTCACATTCAG-TAGC
*
70738277 CGAAGCTATCCCTTTTCACACTC-GATAGC
1 CGAAGCTATCCCTTTTCACATTCAG-TAGC
*
70738306 CGAAGCTATCACTATTT-AC-TGATCAAGTA-C
1 CGAAGCTATCCCT-TTTCACAT--TC-AGTAGC
* *
70738336 CTGGAGCTA-CCACTTTTCACTAATCAGGTAGC
1 C-GAAGCTATCC-CTTTTCAC-ATTCA-GTAGC
*
70738368 CGAAGCTA-CTACTTTTCAC-TGATCAGGTAGC
1 CGAAGCTATC-CCTTTTCACAT--TCA-GTAGC
70738399 CGAAGCTA-CCGCTTTTCACATT
1 CGAAGCTATCC-CTTTTCACATT
70738421 GTACACATAA
Statistics
Matches: 170, Mismatches: 12, Indels: 39
0.77 0.05 0.18
Matches are distributed among these distances:
28 1 0.01
29 94 0.55
30 13 0.08
31 58 0.34
32 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (29 bp):
CGAAGCTATCCCTTTTCACATTCAGTAGC
Found at i:70738382 original size:31 final size:31
Alignment explanation
Indices: 70738273--70738417 Score: 122
Period size: 31 Copynumber: 4.7 Consensus size: 31
70738263 TCACATTTGA
* * *
70738273 TAGCCGAAGCTA-TCCCTTTTCAC-ACTC-GA
1 TAGCCGAAGCTACT-ACTTTTCACTAATCAGG
* *
70738302 TAGCCGAAGCTA-TCACTATTT-ACTGATCAAG
1 TAGCCGAAGCTACT-ACT-TTTCACTAATCAGG
* *
70738333 TA-CCTGGAGCTACCACTTTTCACTAATCAGG
1 TAGCC-GAAGCTACTACTTTTCACTAATCAGG
*
70738364 TAGCCGAAGCTACTACTTTTCACTGATCAGG
1 TAGCCGAAGCTACTACTTTTCACTAATCAGG
**
70738395 TAGCCGAAGCTACCGCTTTTCAC
1 TAGCCGAAGCTACTACTTTTCAC
70738418 ATTGTACACA
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
29 18 0.19
30 10 0.11
31 65 0.68
32 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (31 bp):
TAGCCGAAGCTACTACTTTTCACTAATCAGG
Found at i:70740824 original size:42 final size:42
Alignment explanation
Indices: 70740775--70740928 Score: 186
Period size: 42 Copynumber: 3.6 Consensus size: 42
70740765 GAGATTTATT
* * *
70740775 TGTAAGACCATATCTGAGATATGGAATCAATATGAGACTTCG
1 TGTAAGACCATATCTGAGATATGGCATCGATATGAGACTTCA
70740817 TGTAAGACCATATCT-AGGATATGGCATCGATATGAGACTTCA
1 TGTAAGACCATATCTGA-GATATGGCATCGATATGAGACTTCA
* * * * *
70740859 TGTAATATCATAGCTGGGCTATTGGCATCGATATGAGA-TTACA
1 TGTAAGACCATATCTGAGATA-TGGCATCGATATGAGACTT-CA
*
70740902 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGAGATATGGCAT
70740929 TGGAACGGTA
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 60 0.62
43 35 0.36
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGAGATATGGCATCGATATGAGACTTCA
Found at i:70748295 original size:25 final size:25
Alignment explanation
Indices: 70748262--70748319 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 25
70748252 ATATTTTTGG
*
70748262 TTTATTTTAATT-ATA-TTTAAAATAT
1 TTTAATTTAATTGATACTTT-AAA-AT
*
70748287 TTTAATTT-ATTGATACTTTTAAAT
1 TTTAATTTAATTGATACTTTAAAAT
70748311 TTTAATTTA
1 TTTAATTTA
70748320 TTAACATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
24 13 0.46
25 12 0.43
26 3 0.11
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTAATTTAATTGATACTTTAAAAT
Found at i:70750638 original size:10 final size:10
Alignment explanation
Indices: 70750611--70750679 Score: 95
Period size: 10 Copynumber: 6.9 Consensus size: 10
70750601 TTAAATTTTA
70750611 AAAGATAAAT
1 AAAGATAAAT
70750621 ACAA-ATAAAT
1 A-AAGATAAAT
*
70750631 AAAGATAATT
1 AAAGATAAAT
70750641 AAAGATAAAT
1 AAAGATAAAT
*
70750651 AAAGATAATT
1 AAAGATAAAT
*
70750661 GAAGATAAAT
1 AAAGATAAAT
70750671 AAAGATAAA
1 AAAGATAAA
70750680 AGCCAAAACT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
9 2 0.04
10 47 0.92
11 2 0.04
ACGTcount: A:0.67, C:0.01, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:70751186 original size:22 final size:21
Alignment explanation
Indices: 70751161--70751216 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
70751151 ATTGGATAAA
70751161 TTTTA-AAATATAAATATAAGTT
1 TTTTATAAA-ATAAATATAA-TT
*
70751183 TTTTATTAAATAAATATAATT
1 TTTTATAAAATAAATATAATT
*
70751204 TTATATATAAATA
1 TTTTATA-AAATA
70751217 TGATTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 7 0.24
22 20 0.69
23 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTTATAAAATAAATATAATT
Found at i:70751213 original size:18 final size:18
Alignment explanation
Indices: 70751168--70751234 Score: 64
Period size: 18 Copynumber: 3.6 Consensus size: 18
70751158 AAATTTTAAA
70751168 ATATAAATATAAGTTTTTTATT
1 ATATAAATATAA---TTTTA-T
*
70751190 AAATAAATATAATTTTAT
1 ATATAAATATAATTTTAT
*
70751208 ATATAAATATGATTTTAT
1 ATATAAATATAATTTTAT
*
70751226 -TTTAAATAT
1 ATATAAATAT
70751235 GATAATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.20
18 17 0.41
19 5 0.12
22 11 0.27
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
ATATAAATATAATTTTAT
Found at i:70751233 original size:17 final size:18
Alignment explanation
Indices: 70751192--70751237 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
70751182 TTTTTATTAA
*
70751192 ATAAATATAATTTTATAT
1 ATAAATATGATTTTATAT
70751210 ATAAATATGATTTTAT-T
1 ATAAATATGATTTTATAT
*
70751227 TTAAATATGAT
1 ATAAATATGAT
70751238 AATAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (18 bp):
ATAAATATGATTTTATAT
Found at i:70775896 original size:57 final size:57
Alignment explanation
Indices: 70775822--70775932 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 57
70775812 TACATACATG
* * * * *
70775822 CATATGGCCCACTAGGCCCAATCTCATTTGTATGGCCCATTCGGCCCAATTCACGTT
1 CATATGGCCCACTAGGCCAAATCTCATATATATGGCCCATCCGGCCCAAATCACGTT
*
70775879 CATATGGCCCA-TCAGGCCAAATCTCATATATATGGCGCATCCGGCCCAAATCAC
1 CATATGGCCCACT-AGGCCAAATCTCATATATATGGCCCATCCGGCCCAAATCAC
70775933 ATTATATCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 1 0.02
57 46 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (57 bp):
CATATGGCCCACTAGGCCAAATCTCATATATATGGCCCATCCGGCCCAAATCACGTT
Found at i:70775919 original size:28 final size:28
Alignment explanation
Indices: 70775823--70775939 Score: 98
Period size: 28 Copynumber: 4.1 Consensus size: 28
70775813 ACATACATGC
*
70775823 ATATGGCCCA-CTAGGCCC-AATCTCATTT
1 ATATGGCCCATC-AGGCCCAAATCACA-TT
* * *
70775851 GTATGGCCCATTC-GGCCCAATTCACGTT
1 ATATGGCCCA-TCAGGCCCAAATCACATT
*
70775879 CATATGGCCCATCAGG-CCAAATCTCATAT
1 -ATATGGCCCATCAGGCCCAAATCACAT-T
* *
70775908 ATATGGCGCATCCGGCCCAAATCACATT
1 ATATGGCCCATCAGGCCCAAATCACATT
70775936 ATAT
1 ATAT
70775940 CCATGCTCAC
Statistics
Matches: 71, Mismatches: 11, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
28 44 0.62
29 26 0.37
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAAATCACATT
Found at i:70776192 original size:8 final size:8
Alignment explanation
Indices: 70776159--70776197 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
70776149 ACTTTTGACT
70776159 TTTCGGCA
1 TTTCGGCA
* *
70776167 TTTCAGCT
1 TTTCGGCA
*
70776175 TTTTGGCA
1 TTTCGGCA
70776183 TTTCGGCA
1 TTTCGGCA
70776191 TTTCGGC
1 TTTCGGC
70776198 TTTTGCCGAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:70779510 original size:19 final size:20
Alignment explanation
Indices: 70779486--70779523 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70779476 GGTACCACCA
70779486 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
70779505 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
70779524 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:70779819 original size:46 final size:46
Alignment explanation
Indices: 70779752--70779920 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 46
70779742 CGCCCCTAAG
* * *
70779752 TGAACTAGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
* * * * **
70779798 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACG-TTAGCATCCAT-AAA
* * * *
70779845 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
70779891 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
70779921 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 64 0.64
47 36 0.36
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
Found at i:70779863 original size:93 final size:93
Alignment explanation
Indices: 70779753--70779923 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70779743 GCCCCTAAGT
*
70779753 GAACTAGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
70779818 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
70779846 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
70779911 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70779924 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70783929 original size:28 final size:28
Alignment explanation
Indices: 70783855--70783944 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
70783845 CACACATGCA
*
70783855 TATATGGCCCATCCGACCCAATTCACGTT
1 TATATGGCCCATCCGGCCCAATTCAC-TT
* *
70783884 CATATGGCCCATCAGGCCCAATCTCA-TT
1 TATATGGCCCATCCGGCCCAAT-TCACTT
* * *
70783912 TATATGGCCCAGCCGGCCCAAATCACAT
1 TATATGGCCCATCCGGCCCAATTCACTT
70783940 TATAT
1 TATAT
70783945 CCATGCTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 3 0.06
28 26 0.51
29 19 0.37
30 3 0.06
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (28 bp):
TATATGGCCCATCCGGCCCAATTCACTT
Found at i:70784199 original size:15 final size:16
Alignment explanation
Indices: 70784162--70784198 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
70784152 AAACTTTCTA
*
70784162 CTTTTTGGTATTTCGG
1 CTTTTTGGCATTTCGG
70784178 CTTTTTGGCATTTCGG
1 CTTTTTGGCATTTCGG
70784194 CTTTT
1 CTTTT
70784199 GCCGATGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.05, C:0.16, G:0.22, T:0.57
Consensus pattern (16 bp):
CTTTTTGGCATTTCGG
Found at i:70791055 original size:39 final size:39
Alignment explanation
Indices: 70790983--70791065 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 39
70790973 TCTTTATATA
* * *
70790983 TTTT-TAAATTTTTTATAATTTAAATTATTTTTTGGGAT
1 TTTTGTAAATATTTTATAATTTAAATTATATTTTGGAAT
*
70791021 TTTTGTAAATATTTTA-AATTTTAAAATT-TATTTTGTAAT
1 TTTTGTAAATATTTTATAA-TTT-AAATTATATTTTGGAAT
70791060 TTTTGT
1 TTTTGT
70791066 CGAGAGAGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
38 6 0.16
39 27 0.71
40 5 0.13
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (39 bp):
TTTTGTAAATATTTTATAATTTAAATTATATTTTGGAAT
Found at i:70794958 original size:53 final size:55
Alignment explanation
Indices: 70794895--70795052 Score: 205
Period size: 55 Copynumber: 2.9 Consensus size: 55
70794885 TTTTGAACAT
* *
70794895 ACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G-AACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTAACTC
* * *
70794948 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGTAACTC
* * * *
70795003 ATCAACGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGT
70795053 GTAACGCCTC
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 39 0.44
54 1 0.01
55 45 0.51
56 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (55 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTAACTC
Found at i:70795405 original size:26 final size:26
Alignment explanation
Indices: 70795376--70795483 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
70795366 TGGTACAAAT
70795376 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
70795402 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
70795428 GGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70795454 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70795480 TGAT
1 TGAT
70795484 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70801214 original size:26 final size:26
Alignment explanation
Indices: 70801185--70801292 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
70801175 TGGTACAAAT
70801185 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
70801211 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70801237 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70801263 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70801289 TGAT
1 TGAT
70801293 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70806131 original size:54 final size:55
Alignment explanation
Indices: 70806049--70806158 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
70806039 TGTCCCGTTG
70806049 CCAACCATGGGAACGTGCTTCAAAAA-CCCCCTTCAAGGCTAAAGTTTTTCCCTA
1 CCAACCATGGGAACGTGCTTCAAAAACCCCCCTTCAAGGCTAAAGTTTTTCCCTA
70806103 CCAACCATGGGAACGTGCTTCAAAAACCCCCCTTCAAGGCTAAAGTTTTTCCCTA
1 CCAACCATGGGAACGTGCTTCAAAAACCCCCCTTCAAGGCTAAAGTTTTTCCCTA
70806158 C
1 C
70806159 ACCACAAAGT
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 26 0.47
55 29 0.53
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.24
Consensus pattern (55 bp):
CCAACCATGGGAACGTGCTTCAAAAACCCCCCTTCAAGGCTAAAGTTTTTCCCTA
Found at i:70807562 original size:17 final size:17
Alignment explanation
Indices: 70807537--70807569 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70807527 GTAAGGTATA
70807537 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
70807554 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
70807570 AAATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:70807596 original size:28 final size:29
Alignment explanation
Indices: 70807536--70807592 Score: 84
Period size: 26 Copynumber: 2.1 Consensus size: 29
70807526 TGTAAGGTAT
*
70807536 AATATATAATAAAATATGATATGTAATAA
1 AATATATAATAAAATATGATATGAAATAA
70807565 AATATA-AATAAAATAT-A-ATGAAATAA
1 AATATATAATAAAATATGATATGAAATAA
70807591 AA
1 AA
70807593 AATACTATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 10 0.37
27 1 0.04
28 10 0.37
29 6 0.22
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (29 bp):
AATATATAATAAAATATGATATGAAATAA
Found at i:70807700 original size:37 final size:38
Alignment explanation
Indices: 70807651--70807740 Score: 103
Period size: 37 Copynumber: 2.3 Consensus size: 38
70807641 TTTACACAAT
70807651 TAATGAATAATAATACATAATTTATAA-AAAATAGA-AA
1 TAAT-AATAATAATACATAATTTATAAGAAAATAGATAA
* * *
70807688 TAATATATAATAAAATATAATTTATAAGTAAAATATATAA
1 TAATA-ATAATAATACATAATTTATAAG-AAAATAGATAA
*
70807728 TAATAAAAATAAT
1 TAATAATAATAAT
70807741 GTAATGGATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
36 1 0.02
37 23 0.52
39 13 0.30
40 7 0.16
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (38 bp):
TAATAATAATAATACATAATTTATAAGAAAATAGATAA
Found at i:70809671 original size:44 final size:45
Alignment explanation
Indices: 70809570--70809673 Score: 120
Period size: 44 Copynumber: 2.3 Consensus size: 45
70809560 CAAAGGTTAG
* **
70809570 ATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAA
1 ATCTGCTA--TCTTCGATCTACTCTCCGACGAATACAGAGATGCCAA
* * *
70809617 ATCTGTTATCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTACTCTCCGACGAATACAGAGATGCCAA
*
70809661 ATTTGCTATCTTC
1 ATCTGCTATCTTC
70809674 TTCAACGTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
44 25 0.51
45 17 0.35
47 7 0.14
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTACTCTCCGACGAATACAGAGATGCCAA
Found at i:70809783 original size:218 final size:218
Alignment explanation
Indices: 70809405--70810316 Score: 1781
Period size: 218 Copynumber: 4.2 Consensus size: 218
70809395 GCCATGTTGA
70809405 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
70809470 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTT
66 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTT
70809535 GGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
131 GGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
70809600 GAATATGGAGATGCCAAATCTGT
196 GAATATGGAGATGCCAAATCTGT
* *
70809623 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT-TTGCTATCTTCTTCAACGTAAACA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTG-GATCTTCTTCAACGTAAACA
70809687 CGTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCT
65 CGTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCT
70809752 TGGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGT
130 TGGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGT
70809817 CGAATATGGAGATGCCAAATCTGT
195 CGAATATGGAGATGCCAAATCTGT
70809841 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
70809906 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTT
66 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTT
70809971 GGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
131 GGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
70810036 GAATATGGAGATGCCAAATCTGT
196 GAATATGGAGATGCCAAATCTGT
70810059 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
70810124 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTT
66 GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTT
70810189 GGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
131 GGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
70810254 GAATATGGAGATGCCAAATCTGT
196 GAATATGGAGATGCCAAATCTGT
*
70810277 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAAT
70810317 TTGCTATCTT
Statistics
Matches: 687, Mismatches: 5, Indels: 4
0.99 0.01 0.01
Matches are distributed among these distances:
217 3 0.00
218 681 0.99
219 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (218 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACAC
GTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTT
GGATCTACTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTC
GAATATGGAGATGCCAAATCTGT
Found at i:70809891 original size:44 final size:45
Alignment explanation
Indices: 70809798--70809891 Score: 102
Period size: 44 Copynumber: 2.1 Consensus size: 45
70809788 ATCTGCTATG
* ** * *
70809798 TCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTA
1 TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGTGA
* *
70809843 TCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCT-TGGA
1 TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGT-GA
70809887 TCTTC
1 TCTTC
70809892 TTCAACGTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.56
45 17 0.41
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (45 bp):
TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGTGA
Found at i:70810109 original size:44 final size:45
Alignment explanation
Indices: 70810016--70810109 Score: 102
Period size: 44 Copynumber: 2.1 Consensus size: 45
70810006 ATCTGCTATG
* ** * *
70810016 TCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTA
1 TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGTGA
* *
70810061 TCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCT-TGGA
1 TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGT-GA
70810105 TCTTC
1 TCTTC
70810110 TTCAACGTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.56
45 17 0.41
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (45 bp):
TCTTCGATCTACTCTCCGACGAATACAGAGACGCCAAATCTGTGA
Found at i:70810325 original size:44 final size:44
Alignment explanation
Indices: 70810234--70810448 Score: 349
Period size: 44 Copynumber: 4.9 Consensus size: 44
70810224 ATCTGCTATG
* * * ** * *
70810234 TCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATTTGCTA
70810279 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
70810323 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
70810367 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
*
70810411 TCTTCGATCTGCTCTCTGACAATACAGAGATACCAAAT
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
70810449 CATCTTAGAT
Statistics
Matches: 162, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
44 145 0.90
45 17 0.10
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
Found at i:70810575 original size:353 final size:350
Alignment explanation
Indices: 70810006--70810761 Score: 1027
Period size: 353 Copynumber: 2.1 Consensus size: 350
70809996 CAAAGGTTAG
* * * ** *
70810006 ATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTATCTTCGATCT
1 ATCTGCTA--TCTTCGATCTGCTCTCTGAC-AATAAAGAGATGCCAAATCTGCTATCTTCGATCT
* * *
70810071 GCTCTCTGACAATACAGAGACGCCAAATCTTGGATCTTCTTCAACGTAAACACGTGAAAGCCTAA
63 GCTCTCTGACAATACAGAGACACCAAATCTTAGATCTTCTTCAACGTAAACACGTGAAAGCCAAA
* * *
70810136 TCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTTG
128 TCAGCTATATCTTCAATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCG
*
70810201 ATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGAT
193 ATGTGAAAACATCCAAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCGTCGAATATGGAGAT
* * * * *
70810266 GCCAAATCTGTTATCTTCGATCTGCTCTC-TG-ACAATACA-GAGATGCCAAATTTGCTATCTTC
258 GCCAAATCTATTATCTTAGATCTGCT-TCATGTA-AAAACATGA-AGGCCAAATCTGCTATCTTC
70810328 GATCTGCTCTCTGACAATACAGAGATGCCAA
320 GATCTGCTCTCTGACAATACAGAGATGCCAA
* * *
70810359 ATTTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATAAAGAGATGCCAAATCTGCTATCTTCGATCTGCT
* * *
70810424 CTCTGACAATACAGAGATACCAAATCATCTTAGAT-TTGCTTCAGCGTAAACATGTGAAAGCCAA
66 CTCTGACAATACAGAGACACC-AA--ATCTTAGATCTT-CTTCAACGTAAACACGTGAAAGCCAA
* * * *
70810488 ATCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGTCAAATCATCTTGGATCTACTTC
127 ATCAGCTATATCTTCAATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTC
* * *
70810553 GATGT-AGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTCCGTCGGATATGGAG
192 GATGTGA-AAACATCCAAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCGTCGAATATGGAG
* *
70810617 ATGCCAAATCTATTATCTTAGATCTGCTTCGATGTAAAAACATCTGAAGGTCAGATCTGCTATCT
256 ATGCCAAATCTATTATCTTAGATCTGCTTC-ATGTAAAAACA--TGAAGGCCAAATCTGCTATCT
70810682 TCGATCTGCTCTCTGACAATACAGAGATGCCAA
318 TCGATCTGCTCTCTGACAATACAGAGATGCCAA
* * *
70810715 ATCTGCTATCTTCAATTTGCTCTCTAACAATAAAGAGATGCCAAATC
1 ATCTGCTATCTTCGATCTGCTCTCTGACAATAAAGAGATGCCAAATC
70810762 ATCTTAGGTC
Statistics
Matches: 354, Mismatches: 38, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
350 52 0.15
351 19 0.05
352 5 0.01
353 180 0.51
354 7 0.02
355 1 0.00
356 88 0.25
357 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (350 bp):
ATCTGCTATCTTCGATCTGCTCTCTGACAATAAAGAGATGCCAAATCTGCTATCTTCGATCTGCT
CTCTGACAATACAGAGACACCAAATCTTAGATCTTCTTCAACGTAAACACGTGAAAGCCAAATCA
GCTATATCTTCAATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATG
TGAAAACATCCAAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCCGTCGAATATGGAGATGCC
AAATCTATTATCTTAGATCTGCTTCATGTAAAAACATGAAGGCCAAATCTGCTATCTTCGATCTG
CTCTCTGACAATACAGAGATGCCAA
Found at i:70810736 original size:44 final size:44
Alignment explanation
Indices: 70810671--70810761 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
70810661 TGAAGGTCAG
* * *
70810671 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTAACAATAAAGAGATGCCAA
*
70810715 ATCTGCTATCTTCAATTTGCTCTCTAACAATAAAGAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTAACAATAAAGAGATGCCAA
70810759 ATC
1 ATC
70810762 ATCTTAGGTC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGCTCTCTAACAATAAAGAGATGCCAA
Found at i:70810927 original size:312 final size:312
Alignment explanation
Indices: 70810356--70811121 Score: 1262
Period size: 312 Copynumber: 2.5 Consensus size: 312
70810346 ACAGAGATGC
*
70810356 CAAATTTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCT
* * * *
70810421 GCTCTCTGACAATACAGAGATACCAAATCATCTTAGATTTGCTTCAGCGTAAACATGTGAAAGCC
66 GCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCC
*
70810486 AAATCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGTCAAATCATCTTGGATCTACT
131 AAATCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACT
* *
70810551 TCGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTCCGTCGGATATGGA
196 TCGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCCGTCGAATATGGA
* *
70810616 GATGCCAAATCTATTATCTTAGATCTGCTTCGATGTAAAAACATCTGAAGGT
261 GAAGCCAAATCTATTATCTTAGATCTGCTTCGATGTAAAAACATCCGAAGGT
* * * *
70810668 CAGATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCAATTT
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCT
* * * *
70810733 GCTCTCTAACAATAAAGAGATGCCAAATCATCTTAGGTCTGCTTTAGCGTAAACACGTAAAAGCC
66 GCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCC
* *
70810798 AAATCTGCTATGTCTTCGATCTGCTCCTTATAAACGTAAGGATGCCAAATCATCTTGGATCTACT
131 AAATCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACT
*
70810863 TTGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCCGTCGAATATGGA
196 TCGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCCGTCGAATATGGA
* * * * *
70810928 GAAGTCAAATCTGTTATCTTGGATCTGCTTCGATGTGAAAACATCCGAATGT
261 GAAGCCAAATCTATTATCTTAGATCTGCTTCGATGTAAAAACATCCGAAGGT
* * * *
70810980 CAAATCTGCTATCTTTGATTTGCTCTCTAACAATACAGAGATGCCAAATTTGCTATATTCGATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCT
70811045 GCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCC
66 GCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCC
70811110 AAATCTGCTATG
131 AAATCTGCTATG
70811122 CTTTAGCCTG
Statistics
Matches: 416, Mismatches: 38, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
312 416 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (312 bp):
CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCT
GCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGAAAGCC
AAATCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGCCAAATCATCTTGGATCTACT
TCGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCCGTCGAATATGGA
GAAGCCAAATCTATTATCTTAGATCTGCTTCGATGTAAAAACATCCGAAGGT
Found at i:70811034 original size:44 final size:44
Alignment explanation
Indices: 70810980--70811073 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
70810970 ATCCGAATGT
* * *
70810980 CAAATCTGCTATCTTTGATTTGCTCTCTAACAATACAGAGATGC
1 CAAATCTGCTATATTCGATCTGCTCTCTAACAATACAGAGATGC
* *
70811024 CAAATTTGCTATATTCGATCTGCTCTCTGACAATACAGAGATGC
1 CAAATCTGCTATATTCGATCTGCTCTCTAACAATACAGAGATGC
70811068 CAAATC
1 CAAATC
70811074 ATCTTAGATC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (44 bp):
CAAATCTGCTATATTCGATCTGCTCTCTAACAATACAGAGATGC
Found at i:70815306 original size:28 final size:28
Alignment explanation
Indices: 70815274--70815328 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
70815264 ATCAGTCATT
*
70815274 GCCTTGTGTCCTCAGCAATATGCGTGCA
1 GCCTTATGTCCTCAGCAATATGCGTGCA
70815302 GCCTTATGTCCTCAGCAATATGCGTGC
1 GCCTTATGTCCTCAGCAATATGCGTGC
70815329 TGATTTTCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (28 bp):
GCCTTATGTCCTCAGCAATATGCGTGCA
Found at i:70818465 original size:25 final size:25
Alignment explanation
Indices: 70818437--70818515 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
70818427 CTAATGGCCG
70818437 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
70818462 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
70818484 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
70818509 ATGTGAT
1 ATGTGAT
70818516 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:70818487 original size:47 final size:47
Alignment explanation
Indices: 70818421--70818804 Score: 624
Period size: 47 Copynumber: 8.1 Consensus size: 47
70818411 GAAATGATAG
70818421 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70818468 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70818515 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
70818564 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70818611 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70818658 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
70818707 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
70818754 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70818801 TAAG
1 TAAG
70818805 TCCCGAAGGG
Statistics
Matches: 317, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 225 0.71
49 92 0.29
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:70818596 original size:96 final size:94
Alignment explanation
Indices: 70818421--70818804 Score: 624
Period size: 96 Copynumber: 4.0 Consensus size: 94
70818411 GAAATGATAG
70818421 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
70818486 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
70818515 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
70818580 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
70818611 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
70818676 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
* * *** * * * *
70818707 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGACGGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
70818772 GTGATGGATGTGAAAGTGTATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
70818801 TAAG
1 TAAG
70818805 TCCCGAAGGG
Statistics
Matches: 272, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
94 95 0.35
96 177 0.65
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:70818679 original size:143 final size:143
Alignment explanation
Indices: 70818421--70818804 Score: 660
Period size: 143 Copynumber: 2.7 Consensus size: 143
70818411 GAAATGATAG
70818421 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
70818486 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
70818551 TATATATATGTGA
131 TATATATATGTGA
*
70818564 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
70818629 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
70818694 TATATATATGTGA
131 TATATATATGTGA
* * *** * * * *
70818707 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGACGGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
70818772 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAG
70818805 TCCCGAAGGG
Statistics
Matches: 228, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
143 228 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGA
Found at i:70818979 original size:37 final size:37
Alignment explanation
Indices: 70818923--70819001 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70818913 CCGAGCTCTA
* * *
70818923 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70818960 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70818997 AAGAC
1 AAGAC
70819002 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70820739 original size:40 final size:40
Alignment explanation
Indices: 70820216--70820727 Score: 715
Period size: 40 Copynumber: 12.8 Consensus size: 40
70820206 GAGAATTGAG
70820216 AGTGATATA-CCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70820256 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70820296 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
70820336 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
70820376 AGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70820416 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * *
70820456 AGTGACGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
70820496 AGTGATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
** ** *
70820536 AGTGACGTATCCGGGCTAAGTTTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
70820576 AGTGATATATCCGTGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * * *
70820616 AGTGACGTATCCGGGCTAAGTTCCAAAGAGCATTCGCGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
70820656 AGTGATATATCCGTGCTAA-ACCCTAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCC-GAAGAGCATTCGTGCT
* * *
70820696 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
70820728 ATCATGCTGG
Statistics
Matches: 418, Mismatches: 49, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.01
40 410 0.98
41 5 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:70820944 original size:25 final size:25
Alignment explanation
Indices: 70820903--70820954 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
70820893 TGTGTAATAA
70820903 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
70820928 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
70820953 TG
1 TG
70820955 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:70824825 original size:47 final size:47
Alignment explanation
Indices: 70824770--70824961 Score: 269
Period size: 47 Copynumber: 4.1 Consensus size: 47
70824760 TTAGGATTTT
* * *
70824770 AATGTGATGAATGTGAATATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
70824817 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
70824864 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAGGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
70824911 GATGTGATGAATGTGAACATGTATATATGTGGA-AAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGCC
70824958 AATG
1 AATG
70824962 CGAAATGTGT
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 130 0.98
48 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:70825071 original size:46 final size:46
Alignment explanation
Indices: 70824935--70825071 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
70824925 GAACATGTAT
*
70824935 ATATGTGG-AAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAA-GCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
70824981 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
70825027 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
70825072 TGTATGTATA
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 76 0.96
47 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:70832659 original size:17 final size:17
Alignment explanation
Indices: 70832634--70832666 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70832624 GTAAGGTATA
70832634 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
70832651 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
70832667 AAATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:70832785 original size:24 final size:23
Alignment explanation
Indices: 70832769--70832838 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
70832759 ATACATAATT
70832769 TATAA-AAAATAAAAATAATATA
1 TATAATAAAATAAAAATAATATA
* * *
70832791 TATAATAAAATATAATTTATA-A
1 TATAATAAAATAAAAATAATATA
*
70832813 GTAAAATATATAATAAAAATAATATA
1 -TATAATA-A-AATAAAAATAATATA
70832839 CATTATTTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
22 6 0.17
23 18 0.50
24 1 0.03
25 10 0.28
26 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (23 bp):
TATAATAAAATAAAAATAATATA
Found at i:70832817 original size:18 final size:19
Alignment explanation
Indices: 70832776--70832822 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
70832766 ATTTATAAAA
70832776 AATAAAA-ATAATATATAT
1 AATAAAATATAATATATAT
70832794 AATAAAATATAAT-T-TAT
1 AATAAAATATAATATATAT
70832811 AAGTAAAATATA
1 AA-TAAAATATA
70832823 TAATAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 17 0.63
19 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
AATAAAATATAATATATAT
Found at i:70832826 original size:39 final size:38
Alignment explanation
Indices: 70832752--70832836 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 38
70832742 ACAATTAATG
* *
70832752 AATAATAATACATAATTTATAAAAAATAAAAATAATATA
1 AATAATAAAACATAATTTATAAAAAAT-AAAATAATAAA
* * *
70832791 TATAATAAAATATAATTTATAAGTAAAAT-ATATAATAAA
1 AATAATAAAACATAATTTATAA--AAAATAAAATAATAAA
70832830 AATAATA
1 AATAATA
70832837 TACATTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
39 33 0.87
41 5 0.13
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (38 bp):
AATAATAAAACATAATTTATAAAAAATAAAATAATAAA
Found at i:70839064 original size:70 final size:70
Alignment explanation
Indices: 70838951--70839086 Score: 236
Period size: 70 Copynumber: 1.9 Consensus size: 70
70838941 ACTACCTTAA
* * *
70838951 CTTCTTGCATAAGGACACAACCTAGTCCATTCAAGGATGCATCACTATAAATCACAAATTCTTTC
1 CTTCTTGCATAAGCACACAACCTAGTCCACTCAAGGATACATCACTATAAATCACAAATTCTTTC
70839016 CTTGC
66 CTTGC
*
70839021 CTTCTTGCATAAGCACACAACCTAGTCCACTCAAGGATACATCACTGTAAATCACAAATTCTTTC
1 CTTCTTGCATAAGCACACAACCTAGTCCACTCAAGGATACATCACTATAAATCACAAATTCTTTC
70839086 C
66 C
70839087 CTAATTCTGG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.29
Consensus pattern (70 bp):
CTTCTTGCATAAGCACACAACCTAGTCCACTCAAGGATACATCACTATAAATCACAAATTCTTTC
CTTGC
Found at i:70841860 original size:135 final size:135
Alignment explanation
Indices: 70841618--70841888 Score: 479
Period size: 135 Copynumber: 2.0 Consensus size: 135
70841608 TTTCAAAACT
*
70841618 CAAACTTAAGATCCGTAAATCTTTCCTAAAACTAGACTCATATATATTTCTACTAATTTTTTTCT
1 CAAACTTAAGATCCGTAAATCTTTCCTAAAACTAGACTCATATACATTTCTACTAATTTTTTTCT
** * * *
70841683 AGAATTTTTGACTTAGTGAATTAGTACAGTTTATTAGTTAAAGTTACCCCTGTTTTAGAATTCGA
66 AGAATTTTTGACTTAGCCAATTAGTACAATTTATTAGTTAAAGTTACCCCTATTTCAGAATTCGA
70841748 CTGCA
131 CTGCA
70841753 CAAACTTAAGATCCGTAAATCTTTCCTAAAACTAGACTCATATACATTTCTACTAATTTTTTTCT
1 CAAACTTAAGATCCGTAAATCTTTCCTAAAACTAGACTCATATACATTTCTACTAATTTTTTTCT
*
70841818 AGAATTTTTGACTTAGCCAATTAGTACAATTTATTAGTTAAAGTTACCCCTATTTCAGAATTTGA
66 AGAATTTTTGACTTAGCCAATTAGTACAATTTATTAGTTAAAGTTACCCCTATTTCAGAATTCGA
70841883 CTGCA
131 CTGCA
70841888 C
1 C
70841889 TGGCCTCTAC
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
135 129 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (135 bp):
CAAACTTAAGATCCGTAAATCTTTCCTAAAACTAGACTCATATACATTTCTACTAATTTTTTTCT
AGAATTTTTGACTTAGCCAATTAGTACAATTTATTAGTTAAAGTTACCCCTATTTCAGAATTCGA
CTGCA
Found at i:70842359 original size:150 final size:150
Alignment explanation
Indices: 70842083--70842383 Score: 539
Period size: 150 Copynumber: 2.0 Consensus size: 150
70842073 CCTATTTCAC
* * *
70842083 CAAAGCTCAGATACCATATAAAATACAAAACCTTTACCTATTTTGCTTATTCCATATGAAAATAG
1 CAAAACTCAGATACCATACAAAATACAAAACCTTTACCTATTTTGCTTATTCCATATGAAAAGAG
70842148 ACACAGCGAGCTTTAATTTCATATATTATTCACCATCAACCCATGTCTCTACAATTTCTTGTGAT
66 ACACAGCGAGCTTTAATTTCATATATTATTCACCATCAACCCATGTCTCTACAATTTCTTGTGAT
70842213 TTTTCAAAATCCCGTTATTT
131 TTTTCAAAATCCCGTTATTT
* *
70842233 CAAAACTCAGATACCCTACAAAATACAAAACCTTTACCTGTTTTGCTTATTCCATATGAAAAGAG
1 CAAAACTCAGATACCATACAAAATACAAAACCTTTACCTATTTTGCTTATTCCATATGAAAAGAG
* *
70842298 ACATAGCGAGCTTTAATTTCATATATTATTCACCATCAACCCATGTCTTTACAATTTCTTGTGAT
66 ACACAGCGAGCTTTAATTTCATATATTATTCACCATCAACCCATGTCTCTACAATTTCTTGTGAT
70842363 TTTTCAAAATCCCGTTATTT
131 TTTTCAAAATCCCGTTATTT
70842383 C
1 C
70842384 TGATACTTGA
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 144 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (150 bp):
CAAAACTCAGATACCATACAAAATACAAAACCTTTACCTATTTTGCTTATTCCATATGAAAAGAG
ACACAGCGAGCTTTAATTTCATATATTATTCACCATCAACCCATGTCTCTACAATTTCTTGTGAT
TTTTCAAAATCCCGTTATTT
Found at i:70845104 original size:51 final size:51
Alignment explanation
Indices: 70845049--70845148 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
70845039 CTACCACATA
**
70845049 ACATGTAA-CACATCCATAATGAACTTTGACCTCTCAACGAGCTCGGATGTT
1 ACATG-AATCACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGTT
* * * *
70845100 ACATGAATCGCATCCATTATGAGCTCGGACCTCTCAATGAGCTCGGATG
1 ACATGAATCACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG
70845149 CTCGCATCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGTT
Found at i:70846515 original size:52 final size:52
Alignment explanation
Indices: 70846448--70846553 Score: 158
Period size: 52 Copynumber: 2.0 Consensus size: 52
70846438 TCTATCTTGA
** *
70846448 ATTTGTGGTTGCAAAACCATTGTTCTGACTAGACCCTAATTCGGGATGTTAC
1 ATTTGTGGTCCCAAAACCACTGTTCTGACTAGACCCTAATTCGGGATGTTAC
* * *
70846500 ATTTGTGGTCCCAAAATCACTGTTCTGACTATACCCTAATTTGGGATGTTAC
1 ATTTGTGGTCCCAAAACCACTGTTCTGACTAGACCCTAATTCGGGATGTTAC
70846552 AT
1 AT
70846554 CTCCTACCTG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (52 bp):
ATTTGTGGTCCCAAAACCACTGTTCTGACTAGACCCTAATTCGGGATGTTAC
Found at i:70848753 original size:28 final size:28
Alignment explanation
Indices: 70848693--70848812 Score: 161
Period size: 28 Copynumber: 4.3 Consensus size: 28
70848683 TTAAGTCCGT
*
70848693 ACACTCAGTGCTATATAATC-AACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
70848720 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
* *
70848748 ACACTTAGTGCTACATAATCAAACTTGC
1 ACACTTAGTGCTATATAATCAAACTCGC
* * * *
70848776 ACACTTAGTGCTGTACAATTTAAACCCGC
1 ACACTTAGTGCTATATAA-TCAAACTCGC
70848805 ACACTTAG
1 ACACTTAG
70848813 CGCCAATCTC
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 19 0.23
28 48 0.59
29 15 0.18
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
ACACTTAGTGCTATATAATCAAACTCGC
Found at i:70859866 original size:29 final size:28
Alignment explanation
Indices: 70859830--70859907 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
70859820 TCATGAGATT
70859830 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
70859860 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
70859887 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
70859908 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:70860125 original size:174 final size:174
Alignment explanation
Indices: 70859860--70860187 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
70859850 AAATTGTACA
70859860 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
70859925 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
70859990 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
70860034 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
70860099 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
70860164 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
70860188 ACCTTGAGTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:70864003 original size:27 final size:27
Alignment explanation
Indices: 70863941--70864050 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
70863931 CATGGCTGTT
* *
70863941 AGAACAGATA-ATGTGACAGAGTCACC
1 AGAACAGATATATGTGGCAGAGCCACC
*
70863967 AGATATAGATA-ATCGTGGCAGAGCCACC
1 AGA-ACAGATATAT-GTGGCAGAGCCACC
*
70863995 AGAACAGATATATGTGGTAGAGCCACC
1 AGAACAGATATATGTGGCAGAGCCACC
* * * *
70864022 AGATCAGATATTTCTGGCATAGCCACC
1 AGAACAGATATATGTGGCAGAGCCACC
70864049 AG
1 AG
70864051 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
26 3 0.04
27 51 0.72
28 17 0.24
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
AGAACAGATATATGTGGCAGAGCCACC
Found at i:70864031 original size:54 final size:54
Alignment explanation
Indices: 70863941--70864050 Score: 134
Period size: 54 Copynumber: 2.0 Consensus size: 54
70863931 CATGGCTGTT
* *
70863941 AGAACAGATAATGTGACAGAGTCACCAGATATAGATA-ATCGTGGCAGAGCCACC
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATATATC-TGGCAGAGCCACC
** * *
70863995 AGAACAGATATATGTGGTAGAGCCACCAGAT-CAGATATTTCTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATATATCTGGCAGAGCCACC
70864049 AG
1 AG
70864051 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 29 0.60
55 19 0.40
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATATATCTGGCAGAGCCACC
Found at i:70865350 original size:77 final size:77
Alignment explanation
Indices: 70865223--70865376 Score: 281
Period size: 77 Copynumber: 2.0 Consensus size: 77
70865213 CATGTTAGCT
70865223 GATTTTTCCCTTTAACATCCAAGGCACATGCATGCTCATTTGTTTGGCTCAACTTCACCTATCTT
1 GATTTTTCCCTTTAACATCCAAGGCACATGCATGCTCATTTGTTTGGCTCAACTTCACCTATCTT
70865288 CCATTTTTCATC
66 CCATTTTTCATC
* * *
70865300 GATTTTTCCCTTTAGCATCTAAGGTACATGCATGCTCATTTGTTTGGCTCAACTTCACCTATCTT
1 GATTTTTCCCTTTAACATCCAAGGCACATGCATGCTCATTTGTTTGGCTCAACTTCACCTATCTT
70865365 CCATTTTTCATC
66 CCATTTTTCATC
70865377 AAAAGAACAT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.20, C:0.27, G:0.11, T:0.42
Consensus pattern (77 bp):
GATTTTTCCCTTTAACATCCAAGGCACATGCATGCTCATTTGTTTGGCTCAACTTCACCTATCTT
CCATTTTTCATC
Found at i:70867726 original size:25 final size:25
Alignment explanation
Indices: 70867681--70867763 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 25
70867671 CAGCTCGTAT
70867681 GAGCTTACTGT---TCAGCTCAATA
1 GAGCTTACTGTCCATCAGCTCAATA
70867703 GAGCTTACTGTCCATCAGCTCAATA
1 GAGCTTACTGTCCATCAGCTCAATA
* *
70867728 GAGCTTACTATCCATCAGCTCAAGA
1 GAGCTTACTGTCCATCAGCTCAATA
70867753 GAAGCTTACTG
1 G-AGCTTACTG
70867764 ATCATGGCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
22 11 0.20
25 35 0.65
26 8 0.15
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (25 bp):
GAGCTTACTGTCCATCAGCTCAATA
Found at i:70869554 original size:46 final size:46
Alignment explanation
Indices: 70869482--70869651 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
70869472 TGTAACCCAC
* * *
70869482 CCATAAATGAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATCAATGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
70869528 CCATCAATGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATCAATGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * * *
70869578 -C-TC-ACGAACTTGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATCAATGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
70869621 CCAT-AAGTGAACTCGGACTCAACTCAACGAG
1 CCATCAA-TGAACTCGGACTCAACTCAACGAG
70869652 TTCAGATGCC
Statistics
Matches: 101, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 56 0.55
47 26 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATCAATGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:70870128 original size:30 final size:30
Alignment explanation
Indices: 70870081--70870140 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
70870071 ATTTAATAAG
*
70870081 AACTTTGGCAAAGTTACATTTTTGCCCCTA
1 AACTTTGGCAAAGTTACACTTTTGCCCCTA
*
70870111 AACTTTTGCATAA-TTACACTTTTGCCCCTA
1 AACTTTGGCA-AAGTTACACTTTTGCCCCTA
70870141 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAGTTACACTTTTGCCCCTA
Found at i:70881950 original size:27 final size:27
Alignment explanation
Indices: 70881904--70882035 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
70881894 AAACATATAT
* * * *
70881904 CACATAGGGGAAAAATAGTCAGTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
70881931 CAAATAAGGGCGAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
70881958 CACATAAAGGAAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
70881985 TACATAAGCGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
70882012 CACATAAGGACAAAACAGTCATTT
1 CACATAAGGGCAAAACAGTCATTT
70882036 CATCAATTAG
Statistics
Matches: 86, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:70890020 original size:27 final size:27
Alignment explanation
Indices: 70889990--70890123 Score: 105
Period size: 27 Copynumber: 5.0 Consensus size: 27
70889980 AGAATACTTT
* *
70889990 AGTTTACCAAATTACTGAAATATCCTC
1 AGTTTACAAAATTACTGAAATACCCTC
*
70890017 AGTTGT--AAAATTAC-CAAAGTACCCTC
1 AGTT-TACAAAATTACTGAAA-TACCCTC
* * ** *
70890043 GGTTTATAAAATTACCCAAATATCCTC
1 AGTTTACAAAATTACTGAAATACCCTC
* *
70890070 AATTTGCAAAATTA-TCGAAATACCCTC
1 AGTTTACAAAATTACT-GAAATACCCTC
**
70890097 AGTTTGTAAAATTACTGAAATACCCTC
1 AGTTTACAAAATTACTGAAATACCCTC
70890124 GACATGTAAA
Statistics
Matches: 86, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
25 4 0.05
26 16 0.19
27 60 0.70
28 6 0.07
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
AGTTTACAAAATTACTGAAATACCCTC
Found at i:70890107 original size:54 final size:53
Alignment explanation
Indices: 70889998--70890166 Score: 153
Period size: 54 Copynumber: 3.2 Consensus size: 53
70889988 TTAGTTTACC
** * *
70889998 AAATTACTGAAATATCCTCAGTTGTAAAATTACCAAAGTACCCTCGGTTTATA
1 AAATTACCCAAATATCCTCAGTTGCAAAATTACCAAAGTACCCTCAGTTTATA
* * *
70890051 AAATTACCCAAATATCCTCAATTTGCAAAATTATCGAAA-TACCCTCAGTTTGTA
1 AAATTACCCAAATATCCTC-AGTTGCAAAATTA-CCAAAGTACCCTCAGTTTATA
** * ** * * *
70890105 AAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC-GATTTACA
1 AAATTACCCAAATATCCTC-AGTTGCAAAATTACCAAAGTACCCTCAG-TTTATA
70890159 AAATTACC
1 AAATTACC
70890167 ATTTTACCCT
Statistics
Matches: 93, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
53 21 0.23
54 68 0.73
55 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AAATTACCCAAATATCCTCAGTTGCAAAATTACCAAAGTACCCTCAGTTTATA
Found at i:70890134 original size:81 final size:80
Alignment explanation
Indices: 70889992--70890165 Score: 192
Period size: 81 Copynumber: 2.2 Consensus size: 80
70889982 AATACTTTAG
* * ***
70889992 TTTACCAAATTACTGAAATATCCTCAGTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTA
1 TTTACAAAATTACTGAAATACCCTCAGTTGTAAAATTACCAAAGTACCCTCGACATATAAAATTA
*
70890057 CCCAAA-TATCCTCAA
66 -CCAAAGTACCCTCAA
* * *
70890072 TTTGCAAAATTA-TCGAAATACCCTCAGTTTGTAAAATTACTGAAA-TACCCTCGACATGTAAAA
1 TTTACAAAATTACT-GAAATACCCTCAG-TTGTAAAATTAC-CAAAGTACCCTCGACATATAAAA
* *
70890135 TTATCAAAGTACCCTCGA
63 TTACCAAAGTACCCTCAA
70890153 TTTACAAAATTAC
1 TTTACAAAATTAC
70890166 CATTTTACCC
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
79 1 0.01
80 26 0.34
81 47 0.61
82 3 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
TTTACAAAATTACTGAAATACCCTCAGTTGTAAAATTACCAAAGTACCCTCGACATATAAAATTA
CCAAAGTACCCTCAA
Found at i:70890161 original size:27 final size:26
Alignment explanation
Indices: 70890023--70890545 Score: 172
Period size: 27 Copynumber: 19.3 Consensus size: 26
70890013 CCTCAGTTGT
* *
70890023 AAAATTACCAAAGTACCCTCGGTTTAT
1 AAAATTACCAAA-TACCCTCGATTTAC
* * *
70890050 AAAATTACCCAAATATCCTCAATTTGC
1 AAAATTA-CCAAATACCCTCGATTTAC
* **
70890077 AAAATTATCGAAATACCCTC-AGTTTGT
1 AAAATTA-CCAAATACCCTCGA-TTTAC
* ** **
70890104 AAAATTACTGAAATACCCTCGACATGT
1 AAAATTAC-CAAATACCCTCGATTTAC
*
70890131 AAAATTATCAAAGTACCCTCGATTTAC
1 AAAATTACCAAA-TACCCTCGATTTAC
**
70890158 AAAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCA-AATACCCTCGATTTAC
* ****
70890185 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTAC-CAAATACCCTCGATTTAC
* **
70890212 AAAATTACTATTTTACCCTCGATTTAC
1 AAAATTACCA-AATACCCTCGATTTAC
* * * ** * *
70890239 AGAGTTACTATTTTACCCTTGAATTAC
1 AAAATTACCA-AATACCCTCGATTTAC
* **
70890266 AAAATTACTATTTTACCCTCGATTTAC
1 AAAATTACCA-AATACCCTCGATTTAC
** * *
70890293 AAAATTACC-GTTCTCCCTCGATTTAT
1 AAAATTACCAAAT-ACCCTCGATTTAC
* ** * * *
70890319 AGAATTACCATTTTACCTTTGATTTAG
1 AAAATTACCA-AATACCCTCGATTTAC
* ** *
70890346 AGAATTACCATTTTACCCTCGATTTAG
1 AAAATTACCA-AATACCCTCGATTTAC
* * **
70890373 AAAATTACTAAAATACCC-CTGGTTTGT
1 AAAATTAC-CAAATACCCTC-GATTTAC
* * **
70890400 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTAC-CAAATACCCTC-GATTTAC
* *
70890428 AAAATTACTGAAATACCCTCGACTGGTA-
1 AAAATTAC-CAAATACCCTCGA-T-TTAC
*
70890456 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAA-TACCCTCGATTTAC
* ****
70890483 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTAC-CAAATACCCTCGATTTAC
* **** *
70890510 AGAATTACTGTTTTACCCTTGATTTAC
1 AAAATTAC-CAAATACCCTCGATTTAC
70890537 AAAATTACC
1 AAAATTACC
70890546 GTTTTACCCT
Statistics
Matches: 408, Mismatches: 69, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
25 2 0.00
26 27 0.07
27 325 0.80
28 53 0.13
29 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (26 bp):
AAAATTACCAAATACCCTCGATTTAC
Found at i:70890175 original size:54 final size:55
Alignment explanation
Indices: 70890117--70890580 Score: 202
Period size: 54 Copynumber: 8.6 Consensus size: 55
70890107 ATTACTGAAA
70890117 TACCCTCGACATGTA-A-AATTA-TCAAAGTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGA-ATGTACAGAATTACT-AAAGTACCCTCGATTTACAAAATTACCATTT
* **** *
70890171 TACCCTCG-ATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGAATGTACAGAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
* * *** * * *
70890225 TACCCTCG-ATTTACAGAGTTACTATTTTACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGAATGTACAGAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
* * ***** * *
70890279 TACCCTCG-ATTTACAAAATTACCGTTCT-CCCTCGATTTATAGAATTACCATTT
1 TACCCTCGAATGTACAGAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
* * * * * *** * * ***
70890332 TACCTTTG-ATTTAGAGAATTACCATTTTACCCTCGATTTAGAAAATTACTAAAA
1 TACCCTCGAATGTACAGAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
* ** * * ** * **
70890386 TACCCCTGGTTTGTA-A-AATTACTAAAATACCCCCTGATTTGTAAAATTACTGA-AA
1 TA-CCCTCGAATGTACAGAATTACTAAAGTACCCTC-GATTTACAAAATTAC-CATTT
* * * * * **
70890441 TACCCTCGACTGGTA-AAAATTACCAAAGTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGAAT-GTACAGAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
* **** * *
70890496 TACCCTCG-ATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGAATGTACAGAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
* * *
70890550 TACCCTCGATTGT-GA-AATTACTAAAATACCC
1 TACCCTCGAATGTACAGAATTACTAAAGTACCC
70890581 CTATAGGGTA
Statistics
Matches: 322, Mismatches: 75, Indels: 27
0.76 0.18 0.06
Matches are distributed among these distances:
52 4 0.01
53 57 0.18
54 192 0.60
55 50 0.16
56 19 0.06
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (55 bp):
TACCCTCGAATGTACAGAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
Found at i:70890407 original size:107 final size:107
Alignment explanation
Indices: 70890144--70890390 Score: 287
Period size: 107 Copynumber: 2.3 Consensus size: 107
70890134 ATTATCAAAG
* * *** * * *
70890144 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGAATTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCGTTCT-CCCTCGATT
* * *
70890209 TACAAAATTACTATTTTACCCTCGATTTACAGAGTTACTATTT
65 TACAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* ***
70890252 TACCCTTGAATTACAAAATTACTATTTTACCCTCGATTTACAAAATTACCGTTCTCCCTCGATTT
1 TACCCTCGAATTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCGTTCTCCCTCGATTT
* * * * *
70890317 ATAGAATTACCATTTTACCTTTGATTTAGAGAATTACCATTT
66 ACAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* *
70890359 TACCCTCGATTTAGAAAATTACTAAAATACCC
1 TACCCTCGAATTACAAAATTACTAAAATACCC
70890391 CTGGTTTGTA
Statistics
Matches: 119, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
107 70 0.59
108 49 0.41
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (107 bp):
TACCCTCGAATTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCGTTCTCCCTCGATTT
ACAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:70890428 original size:28 final size:28
Alignment explanation
Indices: 70890373--70890445 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
70890363 CTCGATTTAG
*
70890373 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
70890400 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
*
70890428 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
70890446 TCGACTGGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 15 0.35
28 28 0.65
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:70890459 original size:28 final size:27
Alignment explanation
Indices: 70890373--70890477 Score: 95
Period size: 28 Copynumber: 3.8 Consensus size: 27
70890363 CTCGATTTAG
** *
70890373 AAAATTACTAAAATACCC-CTGGTTTGT
1 AAAATTACTAAAATACCCTC-GACTGGT
* * *
70890400 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCTC-GACTGGT
*
70890428 AAAATTACTGAAATACCCTCGACTGGT
1 AAAATTACTAAAATACCCTCGACTGGT
* *
70890455 AAAAATTACCAAAGTACCCTCGA
1 -AAAATTACTAAAATACCCTCGA
70890478 TTTATAGAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 23 0.34
28 45 0.66
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGACTGGT
Found at i:70890504 original size:55 final size:56
Alignment explanation
Indices: 70890361--70890492 Score: 135
Period size: 55 Copynumber: 2.4 Consensus size: 56
70890351 TACCATTTTA
* * ** * *
70890361 CCCTCGATTTAGAAAATTACTAAAATACCC-CTGGTTTGT-AAAATTACTAAAATACC
1 CCCT-GATTTATAAAATTACTGAAATACCCTC-GACTGGTAAAAATTACCAAAATACC
* *
70890417 CCCTGATTTGTAAAATTACTGAAATACCCTCGACTGGTAAAAATTACCAAAGTACC
1 CCCTGATTTATAAAATTACTGAAATACCCTCGACTGGTAAAAATTACCAAAATACC
* *
70890473 CTC-GATTTATAGAATTACTG
1 CCCTGATTTATAAAATTACTG
70890493 TTTTACCCTC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
55 41 0.65
56 22 0.35
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.30
Consensus pattern (56 bp):
CCCTGATTTATAAAATTACTGAAATACCCTCGACTGGTAAAAATTACCAAAATACC
Found at i:70890549 original size:27 final size:27
Alignment explanation
Indices: 70890144--70890560 Score: 293
Period size: 27 Copynumber: 15.4 Consensus size: 27
70890134 ATTATCAAAG
* **
70890144 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
70890171 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
70890198 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
70890225 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * *
70890252 TACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
70890279 TACCCTCGATTTACAAAATTACCGTTC
1 TACCCTCGATTTACAGAATTACTGTTT
* **
70890306 T-CCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * **
70890332 TACCTTTGATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * ****
70890359 TACCCTCGATTTAGAAAATTACTAAAA
1 TACCCTCGATTTACAGAATTACTGTTT
* * ****
70890386 TACCCCTGGTTTGTA-A-AATTACTAAAA
1 TA-CCCTCGATT-TACAGAATTACTGTTT
* ** * ***
70890413 TACCCCCTGATTTGTAAAATTACTGAAA
1 TACCCTC-GATTTACAGAATTACTGTTT
* * *****
70890441 TACCCTCGACTGGTA-AAAATTACCAAAG
1 TACCCTCGA-T-TTACAGAATTACTGTTT
*
70890469 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
70890496 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
70890523 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
70890550 TACCCTCGATT
1 TACCCTCGATT
70890561 GTGAAATTAC
Statistics
Matches: 326, Mismatches: 55, Indels: 18
0.82 0.14 0.05
Matches are distributed among these distances:
26 28 0.09
27 251 0.77
28 44 0.13
29 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:70890559 original size:81 final size:81
Alignment explanation
Indices: 70890144--70890560 Score: 390
Period size: 81 Copynumber: 5.1 Consensus size: 81
70890134 ATTATCAAAG
* * *
70890144 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
*
70890209 TACAAAATTACTATTT
66 TACAAAATTACCATTT
* * * * * *
70890225 TACCCTCGATTTACAGAGTTACTATTTTACCCTTGAATTACAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* *
70890290 TACAAAATTACCGTTC
66 TACAAAATTACCATTT
* * * * **
70890306 T-CCCTCGATTTATAGAATTACCATTTTACCTTTGATTTAGAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* * ***
70890370 TAGAAAATTACTAAAA
66 TACAAAATTACCATTT
* * * *** * ** * ***
70890386 TACCC-CTGGTTTGTAAAATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATACCCTCGA
1 TACCCTC-GATTTATAGAATTACTATTTTACCCTC-GATTTACAGAATTACTGTTTTACCCTCGA
* ***
70890450 CTGGTA-AAAATTACCAAAG
64 -T-TTACAAAATTACCATTT
* *
70890469 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
*
70890534 TACAAAATTACCGTTT
66 TACAAAATTACCATTT
70890550 TACCCTCGATT
1 TACCCTCGATT
70890561 GTGAAATTAC
Statistics
Matches: 264, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
80 69 0.26
81 113 0.43
82 43 0.16
83 36 0.14
84 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:70892809 original size:93 final size:93
Alignment explanation
Indices: 70892647--70892821 Score: 269
Period size: 93 Copynumber: 1.9 Consensus size: 93
70892637 GAGTTACGAA
* * ** *
70892647 CTCGATGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTTTTTGAGTTGAGTCGG
1 CTCGATGAGTTAAGTCCGAGTTCGTGAGATATAACTAGGCATCCAAACTCGTTGAGTTGAGTCCG
70892712 AGTTCACTTATGGATGCGAGCGCCTAAG
66 AGTTCACTTATGGATGCGAGCGCCTAAG
* * **
70892740 CTCGTTGAGTTAAGTCTGAGTTCGTGAGATATAACTAGGCATCTGAACTCGTTGAGTTGAGTCCG
1 CTCGATGAGTTAAGTCCGAGTTCGTGAGATATAACTAGGCATCCAAACTCGTTGAGTTGAGTCCG
70892805 AGTTCACTTATGGATGC
66 AGTTCACTTATGGATGC
70892822 AAACACCCGA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (93 bp):
CTCGATGAGTTAAGTCCGAGTTCGTGAGATATAACTAGGCATCCAAACTCGTTGAGTTGAGTCCG
AGTTCACTTATGGATGCGAGCGCCTAAG
Found at i:70892835 original size:93 final size:93
Alignment explanation
Indices: 70892647--70892843 Score: 268
Period size: 93 Copynumber: 2.1 Consensus size: 93
70892637 GAGTTACGAA
* * * ** *
70892647 CTCGATGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTTTTTGAGTTGAGTCGG
1 CTCGTTGAGTTAAGTCCGAGTTCGTGAGATATAACTAGGCATCCAAACTCGTTGAGTTGAGTCCG
* * * *
70892712 AGTTCACTTATGGATGCGAGCGCCTAAG
66 AGTTCACTTATGGATGCAAACACCCAAG
* **
70892740 CTCGTTGAGTTAAGTCTGAGTTCGTGAGATATAACTAGGCATCTGAACTCGTTGAGTTGAGTCCG
1 CTCGTTGAGTTAAGTCCGAGTTCGTGAGATATAACTAGGCATCCAAACTCGTTGAGTTGAGTCCG
*
70892805 AGTTCACTTATGGATGCAAACACCCGAG
66 AGTTCACTTATGGATGCAAACACCCAAG
70892833 CTCGTTGAGTT
1 CTCGTTGAGTT
70892844 GAATCCAAGT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
CTCGTTGAGTTAAGTCCGAGTTCGTGAGATATAACTAGGCATCCAAACTCGTTGAGTTGAGTCCG
AGTTCACTTATGGATGCAAACACCCAAG
Found at i:70898927 original size:93 final size:93
Alignment explanation
Indices: 70898785--70898961 Score: 248
Period size: 93 Copynumber: 1.9 Consensus size: 93
70898775 TTGAGTTCGA
* * *
70898785 GAGATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTTACTTATAGATACGAACGCCT
1 GAGATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATACGAACACCC
*
70898850 GAGCTCATTGAGTTGAGTCTGATTTAGT
66 GAGCTCATTGACTTGAGTCTGATTTAGT
* * * **
70898878 GAGATGTAACTAGGCA-GCAGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACACC
1 GAGATGTAACTAGGCATCCA-AACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATACGAACACC
*
70898942 CGAGCTCGTTGACTTGAGTC
65 CGAGCTCATTGACTTGAGTC
70898962 CGAGTTCACT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (93 bp):
GAGATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATACGAACACCC
GAGCTCATTGACTTGAGTCTGATTTAGT
Found at i:70900999 original size:50 final size:50
Alignment explanation
Indices: 70900897--70901181 Score: 439
Period size: 50 Copynumber: 5.7 Consensus size: 50
70900887 TCTCATATTG
* **
70900897 ATGCCATGTCCCAGACATGGTCTTAAATGAAAT-A-ATATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCGATGCCA
* * *
70900945 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCGATGCCA
* *
70900995 ATGCCATGTCCCAGACATGGTGTTACATGGGATCACATATATCGACGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCGATGCCA
*
70901045 ATGTCATGTCCCAGACATGGTCTTACATGGGATCACATATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCGATGCCA
* *
70901095 ATGCCATGTCCCAGACATGGTCTTACATGGGATTACATATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCGATGCCA
* *
70901145 ATTCCATGCCCCAGACATGGTCTTACATGGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
70901182 CATAACCCTA
Statistics
Matches: 215, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
48 28 0.13
49 1 0.00
50 186 0.87
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCGATGCCA
Found at i:70909132 original size:6 final size:6
Alignment explanation
Indices: 70909121--70909392 Score: 222
Period size: 6 Copynumber: 44.8 Consensus size: 6
70909111 AACCAAAATG
* * *
70909121 AGAATC AGAATC AGAATC A-ATAAC AGAATC AGACTC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AGA-ATC AGAATC AGAATC AGAATC AGA-ATC
* * *
70909169 AGTAA-C AGAATC AGAATC AAAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
70909218 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
70909266 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
* * *
70909315 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* *
70909363 AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
70909393 GTGAATGCAA
Statistics
Matches: 213, Mismatches: 30, Indels: 46
0.74 0.10 0.16
Matches are distributed among these distances:
5 15 0.07
6 180 0.85
7 14 0.07
8 4 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:70909221 original size:85 final size:85
Alignment explanation
Indices: 70909121--70909392 Score: 490
Period size: 85 Copynumber: 3.2 Consensus size: 85
70909111 AACCAAAATG
* * *
70909121 AGAATCAGAATCAGAATCAATAACAGAATCAGACTCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
70909186 CAAAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
70909206 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
70909271 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
70909291 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
* *
70909356 TAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTAGGTGAC
70909376 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
70909393 GTGAATGCAA
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 181 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGAC
Found at i:70909547 original size:27 final size:26
Alignment explanation
Indices: 70909510--70909575 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
70909500 AGCATGGCTG
*
70909510 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
70909536 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
70909563 CCAGAATCAGATA
1 CCAGAA-CAGATA
70909576 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:70909580 original size:27 final size:27
Alignment explanation
Indices: 70909510--70909583 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
70909500 AGCATGGCTG
* *
70909510 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
70909536 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
70909563 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
70909584 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:70909590 original size:27 final size:27
Alignment explanation
Indices: 70909534--70909591 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
70909524 GTGACAGAGT
* * *
70909534 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
70909561 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
70909588 CACC
1 CACC
70909592 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:70909796 original size:22 final size:22
Alignment explanation
Indices: 70909748--70909806 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
70909738 GTAAATACGT
*
70909748 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
70909770 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
70909792 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
70909807 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:70909973 original size:27 final size:26
Alignment explanation
Indices: 70909894--70909976 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
70909884 TCGATCGGTC
* * *
70909894 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
70909920 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
70909947 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
70909974 AAC
1 AAC
70909977 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:70910205 original size:27 final size:27
Alignment explanation
Indices: 70910175--70910363 Score: 216
Period size: 27 Copynumber: 7.0 Consensus size: 27
70910165 GGGGCAAAAT
* * *
70910175 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
70910202 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
70910229 AGTATTTCCACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
70910256 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
70910283 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
70910310 AGTAATTCTACCCTATAAGGGGTATTTC
1 GGTAATTCTACCCTACAA-GGGTATTTC
** *
70910338 GAAAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
70910364 TAGTAATTTC
Statistics
Matches: 135, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
27 113 0.84
28 22 0.16
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:70910289 original size:81 final size:82
Alignment explanation
Indices: 70910177--70910371 Score: 266
Period size: 81 Copynumber: 2.4 Consensus size: 82
70910167 GGCAAAATGG
* * * * * * *
70910177 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACATGGGTATTTCAGTATTTCCACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCCACCC
70910242 TACAA-GGGTATTTCGA
66 TACAAGGGGTATTTCGA
* * *
70910258 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCCACCC
*
70910323 TATAAGGGGTATTTCGA
66 TACAAGGGGTATTTCGA
* *
70910340 AAATTCTACCCTACAGGGGTATTTTAGTAATT
1 TAATTCTACCCTACAGGGGTATTTTGGTAATT
70910372 TCACAATCAA
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 59 0.59
82 41 0.41
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (82 bp):
TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCCACCC
TACAAGGGGTATTTCGA
Found at i:70910452 original size:54 final size:54
Alignment explanation
Indices: 70910380--70910540 Score: 250
Period size: 54 Copynumber: 3.0 Consensus size: 54
70910370 TTTCACAATC
70910380 AAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATT
1 AAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATT
** * * * *
70910434 AAGGGTAAAACGGTAATTCAATAAATAGAGGGTAAAACAGTAATTCTATAAACT
1 AAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATT
* *
70910488 AAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAT
1 AAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAAT
70910541 CGAGAGTACT
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (54 bp):
AAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATT
Found at i:70910540 original size:81 final size:81
Alignment explanation
Indices: 70910381--70910533 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
70910371 TTCACAATCA
* * * *
70910381 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATTAAGGGTAAAACG
1 AGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACG
70910446 GTAATTCAATAAATAG
66 GTAATTCAATAAATAG
* * *
70910462 AGGGTAAAACAGTAATTCTATAAA-CTAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAT
1 AGGGTAAAACAGTAATTCTATAAATC-AAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAAC
70910526 GGTAATTC
65 GGTAATTC
70910534 TGTAAATCGA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
80 1 0.02
81 63 0.98
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.27
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACG
GTAATTCAATAAATAG
Found at i:70910542 original size:27 final size:27
Alignment explanation
Indices: 70910376--70910544 Score: 205
Period size: 27 Copynumber: 6.3 Consensus size: 27
70910366 GTAATTTCAC
*
70910376 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
70910403 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** **
70910430 AATTAAGGGTAAAACGGTAATTCAATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
70910457 AATAGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
70910484 AA-CTAAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
70910511 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
70910538 AATCGAG
1 AATCGAG
70910545 AGTACTTTGG
Statistics
Matches: 121, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 120 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:70912429 original size:6 final size:6
Alignment explanation
Indices: 70912418--70912628 Score: 161
Period size: 6 Copynumber: 34.8 Consensus size: 6
70912408 TCAGTCATAT
* *
70912418 AGAATC AGAATC AGTAA-C AAAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
70912466 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
*
70912515 AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
* * * * *
70912563 AGAATC AGAATT AG-GTGAC AGAATT AGAATC AGAATC AGTAA-C TGAATT
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC
*
70912612 AGAATC AGAATT AGAAT
1 AGAATC AGAATC AGAAT
70912629 TACGTGACAG
Statistics
Matches: 164, Mismatches: 21, Indels: 40
0.73 0.09 0.18
Matches are distributed among these distances:
5 14 0.09
6 134 0.82
7 12 0.07
8 4 0.02
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:70912454 original size:30 final size:30
Alignment explanation
Indices: 70912418--70912653 Score: 239
Period size: 30 Copynumber: 8.2 Consensus size: 30
70912408 TCAGTCATAT
* *
70912418 AGAATCAGAATCAGTAACAAAATCAGAATC
1 AGAATCAGAATTAGTAACAGAATCAGAATC
70912448 AGAATCA-ATATTAGTAACAGAATCAGAATC
1 AGAATCAGA-ATTAGTAACAGAATCAGAATC
70912478 AGAATCAGAATTAGGT----G-A-CAGAATC
1 AGAATCAGAATTA-GTAACAGAATCAGAATC
*
70912503 AGAATCAGAATCAGTAACAGAATCAGAATC
1 AGAATCAGAATTAGTAACAGAATCAGAATC
70912533 AGAATCA-ATATTAGTAACAGAATCAGAATC
1 AGAATCAGA-ATTAGTAACAGAATCAGAATC
*
70912563 AGAATCAGAATTAGGT----G-A-CAGAATT
1 AGAATCAGAATTA-GTAACAGAATCAGAATC
* * *
70912588 AGAATCAGAATCAGTAACTGAATTAGAATC
1 AGAATCAGAATTAGTAACAGAATCAGAATC
* * *
70912618 AGAATTAGAATTACGTGACAGAATCAAAATC
1 AGAATCAGAATTA-GTAACAGAATCAGAATC
70912649 AGAAT
1 AGAAT
70912654 GTGAATGCAA
Statistics
Matches: 173, Mismatches: 14, Indels: 37
0.77 0.06 0.17
Matches are distributed among these distances:
24 4 0.02
25 37 0.21
26 2 0.01
27 2 0.01
28 2 0.01
29 4 0.02
30 98 0.57
31 24 0.14
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATTAGTAACAGAATCAGAATC
Found at i:70912555 original size:85 final size:85
Alignment explanation
Indices: 70912418--70912653 Score: 384
Period size: 85 Copynumber: 2.8 Consensus size: 85
70912408 TCAGTCATAT
*
70912418 AGAATCAGAATCAGTAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAAT
70912483 CAGAATTAGGTGACAGAATC
66 CAGAATTAGGTGACAGAATC
70912503 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAAT
*
70912568 CAGAATTAGGTGACAGAATT
66 CAGAATTAGGTGACAGAATC
* * * * *
70912588 AGAATCAGAATCAGTAACTGAATTAGAATCAGAATTAGA-ATTACGTGACAGAATCAAAATCAGA
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCA-ATATTA-GTAACAGAATCAGAATCAGA
70912652 AT
64 AT
70912654 GTGAATGCAA
Statistics
Matches: 142, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
85 121 0.85
86 21 0.15
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAAT
CAGAATTAGGTGACAGAATC
Found at i:70912650 original size:55 final size:54
Alignment explanation
Indices: 70912418--70912653 Score: 244
Period size: 55 Copynumber: 4.2 Consensus size: 54
70912408 TCAGTCATAT
*
70912418 AGAATCAGAATCAGTAACAAAATCAGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGA-ATTAGTAACAGAATC
* * *
70912472 AGAATCAGAATCAG-AATTAG-GTGACAGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGTAA-CAGAAT--CAGAATCAGAATCAGAATTAGTAACAGAATC
* *
70912527 AGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATC------AGTAACAGAATCAGAATCAGAATCAGAATTA-GTAACAGAATC
* * * *
70912588 AGAATCAGAATCAGTAACTGAATTAGAATCAGAATTAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTA-GTAACAGAATC
*
70912643 AAAATCAGAAT
1 AGAATCAGAAT
70912654 GTGAATGCAA
Statistics
Matches: 154, Mismatches: 15, Indels: 25
0.79 0.08 0.13
Matches are distributed among these distances:
53 3 0.02
54 15 0.10
55 88 0.57
56 1 0.01
60 19 0.12
61 25 0.16
62 3 0.02
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (54 bp):
AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:70913057 original size:22 final size:22
Alignment explanation
Indices: 70913009--70913067 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
70912999 GTAAATACGT
*
70913009 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
70913031 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
70913053 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
70913068 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:70913219 original size:27 final size:26
Alignment explanation
Indices: 70913159--70913236 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
70913149 CGGTCAATAA
* * * *
70913159 ATATTGTGACAGAGTCACCAAATAAAG
1 ATATTGTGGCAGAGCCACCAGA-ACAG
70913186 ATATTGTGGCAGAGCCACCAGAACAG
1 ATATTGTGGCAGAGCCACCAGAACAG
*
70913212 ATATTTGTGGCATAGCCACCAGAAC
1 ATA-TTGTGGCAGAGCCACCAGAAC
70913237 GCTTCCTCCG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 6 0.13
27 39 0.87
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
ATATTGTGGCAGAGCCACCAGAACAG
Found at i:70913466 original size:27 final size:27
Alignment explanation
Indices: 70913436--70913630 Score: 239
Period size: 27 Copynumber: 7.2 Consensus size: 27
70913426 GGGCAAAATG
* * * *
70913436 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
70913463 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
70913490 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
70913516 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
70913544 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
70913571 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
70913598 GAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
70913625 GTAATT
1 GTAATT
70913631 TCACAATTAA
Statistics
Matches: 144, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:70914007 original size:27 final size:27
Alignment explanation
Indices: 70913640--70913990 Score: 589
Period size: 27 Copynumber: 13.0 Consensus size: 27
70913630 TTCACAATTA
70913640 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
70913667 AGGGTAAAACGATAATTTTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
* * *
70913694 AGGGTAAACCAGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATCG
* **
70913721 AGGGTAAAACGGTAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
70913748 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
70913775 AGGGTAAAACAGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
70913802 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
70913829 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
70913856 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
70913883 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
70913910 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
70913937 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
70913964 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
70913991 GGAGTACTTT
Statistics
Matches: 302, Mismatches: 18, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
26 2 0.01
27 298 0.99
28 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATCG
Found at i:70916414 original size:27 final size:27
Alignment explanation
Indices: 70916384--70916566 Score: 222
Period size: 27 Copynumber: 6.8 Consensus size: 27
70916374 CTTTAATCAA
* * *
70916384 TAAAATAATTATTTTGCCTTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGGGG
* * *
70916411 TAAAATGACTGTTTTACCCTTGTGGGG
1 TAAAATGACTATTTTGCCCTTATGGGG
* *
70916438 TAAAATGACTATTTTGCCTTTATGGTG
1 TAAAATGACTATTTTGCCCTTATGGGG
* *
70916465 TAAAATAATTATTTTGCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGGGG
*
70916492 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGGGG
* * *
70916519 TAAAATGGCTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGGGG
* *
70916546 TAAAATGATTGTTTTGCCCTT
1 TAAAATGACTATTTTGCCCTT
70916567 TTATTGTAAG
Statistics
Matches: 133, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGGGG
Found at i:70916468 original size:54 final size:54
Alignment explanation
Indices: 70916384--70916596 Score: 234
Period size: 54 Copynumber: 3.9 Consensus size: 54
70916374 CTTTAATCAA
* * * *
70916384 TAAAATAATTATTTTGCCTTTATGGGGTAAAATGACTGTTTTACCCTTGTGGGG
1 TAAAATGACTATTTTGCCTTTATGGTGTAAAATGACTGTTTTACCCTTATGGGG
* * * *
70916438 TAAAATGACTATTTTGCCTTTATGGTGTAAAATAATTATTTTGCCCTTATGGGG
1 TAAAATGACTATTTTGCCTTTATGGTGTAAAATGACTGTTTTACCCTTATGGGG
* * * *
70916492 TAAAATGACTATTTTGCCCTTATGAG-GTAAAATGGCTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCTTTATG-GTGTAAAATGACTGTTTTACCCTTATGGGG
* * * *
70916546 TAAAATGATTGTTTTGCCCTTTTAT--TGTAAGATGACTGTTTTACCCCTATG
1 TAAAATGACTATTTTG-CC-TTTATGGTGTAAAATGACTGTTTTACCCTTATG
70916597 TGATGTATGT
Statistics
Matches: 134, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
54 127 0.95
55 3 0.02
56 4 0.03
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (54 bp):
TAAAATGACTATTTTGCCTTTATGGTGTAAAATGACTGTTTTACCCTTATGGGG
Found at i:70916476 original size:81 final size:81
Alignment explanation
Indices: 70916384--70916596 Score: 261
Period size: 81 Copynumber: 2.6 Consensus size: 81
70916374 CTTTAATCAA
* *
70916384 TAAAATAATTATTTTGCCTTTATGGGGTAAAATGACTGTTTTACCCTTGTGGGGTAAAATGACTA
1 TAAAATAATTATTTTGCCTTTATGGGGTAAAATGACTGTTTTACCCTTATGAGGTAAAATGACTA
*
70916449 TTTTGCCTTTATG-GTG
66 TTTTGCCCTTATGTG-G
* * * * *
70916465 TAAAATAATTATTTTGCCCTTATGGGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGGCTG
1 TAAAATAATTATTTTGCCTTTATGGGGTAAAATGACTGTTTTACCCTTATGAGGTAAAATGACTA
70916530 TTTTGCCCTTATGTGG
66 TTTTGCCCTTATGTGG
* * * * *
70916546 TAAAATGATTGTTTTGCCCTTTTAT--TGTAAGATGACTGTTTTACCCCTATG
1 TAAAATAATTATTTTG-CC-TTTATGGGGTAAAATGACTGTTTTACCCTTATG
70916597 TGATGTATGT
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
81 106 0.94
82 3 0.03
83 4 0.04
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (81 bp):
TAAAATAATTATTTTGCCTTTATGGGGTAAAATGACTGTTTTACCCTTATGAGGTAAAATGACTA
TTTTGCCCTTATGTGG
Found at i:70916575 original size:27 final size:27
Alignment explanation
Indices: 70916409--70916587 Score: 139
Period size: 27 Copynumber: 6.6 Consensus size: 27
70916399 GCCTTTATGG
* * **
70916409 GGTAAAATGACTGTTTTACCCTTGTGG
1 GGTAAAATGACTGTTTTGCCCTTTTAT
*
70916436 GGTAAAATGACTATTTTG-CC-TTTAT
1 GGTAAAATGACTGTTTTGCCCTTTTAT
* * * * **
70916461 GGTGTAAAATAATTATTTTGCCCTTATGG
1 -G-GTAAAATGACTGTTTTGCCCTTTTAT
* *
70916490 GGTAAAATGACTATTTTGCCCTTATGA-
1 GGTAAAATGACTGTTTTGCCCTT-TTAT
* * *
70916517 GGTAAAATGGCTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTTTAT
*
70916544 GGTAAAATGATTGTTTTGCCCTTTTAT
1 GGTAAAATGACTGTTTTGCCCTTTTAT
* *
70916571 TGTAAGATGACTGTTTT
1 GGTAAAATGACTGTTTT
70916588 ACCCCTATGT
Statistics
Matches: 119, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
25 2 0.02
26 3 0.03
27 109 0.92
28 3 0.03
29 2 0.02
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTTTAT
Found at i:70918985 original size:47 final size:47
Alignment explanation
Indices: 70918928--70919056 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
70918918 GTGTGAATAA
* * *
70918928 TACCTTGATTTGGCTACGGGCCAAGGTATAGATATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGATACTCAGAGAGAAGT
* * * * *
70918975 TACCTTGATTTGGCTACGGGACATGGTATAGGTACTCTGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGATACTCAGAGAGAAGT
*
70919022 TACCTTGATTTGGCTAC-GGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGATACT
70919057 TATCAATTGA
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
46 17 0.23
47 56 0.77
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGATACTCAGAGAGAAGT
Found at i:70919106 original size:23 final size:23
Alignment explanation
Indices: 70919076--70919123 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
70919066 AAATCCTTGA
*
70919076 GTATTTGATTTTTATTCCGAATG
1 GTATTTGATTTTTATTCCAAATG
70919099 GTATTTGATTTTTATTCCAAATG
1 GTATTTGATTTTTATTCCAAATG
70919122 GT
1 GT
70919124 TCAATGGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.52
Consensus pattern (23 bp):
GTATTTGATTTTTATTCCAAATG
Found at i:70921319 original size:45 final size:44
Alignment explanation
Indices: 70921252--70921336 Score: 107
Period size: 45 Copynumber: 1.9 Consensus size: 44
70921242 ATGCGACCTA
* *
70921252 AACTCATGAGTTATGGAATGAGTTTATGATATATGCGACATCTG
1 AACTCATGAGTTATGGAATGAGTTCATGATACATGCGACATCTG
* ** *
70921296 AACTCATTGAGTTGTGGTCTGAGTTCATGATACATGTGACA
1 AACTCA-TGAGTTATGGAATGAGTTCATGATACATGCGACA
70921337 CATGTTTTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 6 0.18
45 28 0.82
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (44 bp):
AACTCATGAGTTATGGAATGAGTTCATGATACATGCGACATCTG
Found at i:70925377 original size:48 final size:48
Alignment explanation
Indices: 70925258--70925478 Score: 209
Period size: 48 Copynumber: 4.6 Consensus size: 48
70925248 ATGAGTTTTC
* **
70925258 GTGTAAGACCATGTCTGGGACATGGCATTGGC-ATCCGAGATATG--TGCTT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGAT---A-ATATGTATGCCA
*
70925307 GTGTAAGACCATGTCTGGGACATAGCATCGGCGATAATATGTATGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGTATGCCA
* * * * *
70925355 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGTATGCCA
* * * * *
70925403 GTGTAAGACAATGTCTAGGACATGGCATCGACGATGATATGTGGAT-TCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGT--ATGCCA
* *
70925452 -TGTAAGACGATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
70925479 TGGTACTTTA
Statistics
Matches: 146, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
46 5 0.03
47 1 0.01
48 106 0.73
49 31 0.21
50 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGTATGCCA
Found at i:70925424 original size:96 final size:96
Alignment explanation
Indices: 70925258--70925478 Score: 277
Period size: 96 Copynumber: 2.3 Consensus size: 96
70925248 ATGAGTTTTC
** * *
70925258 GTGTAAGACCATGTCTGGGACATGGCATTGGCATCCGAGATATGTGCTTGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCAT-CGAGATATGTGCTAGTGTAAGACAATGTCT
* *
70925323 GGGACATAGCATCGGCGATAATATGT-ATGCCA
65 AGGACATAGCATCGACGATAATATGTGAT-CCA
*
70925355 GTGTAAGACCATGTCTGGGACATGGCATCAGCGAT-GATATATGTGCTAGTGTAAGACAATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCAGC-ATCGAGATATGTGCTAGTGTAAGACAATGTCT
* * *
70925419 AGGACATGGCATCGACGATGATATGTGGATTCA
65 AGGACATAGCATCGACGATAATATGT-GATCCA
* *
70925452 -TGTAAGACGATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
70925479 TGGTACTTTA
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
96 73 0.67
97 32 0.29
98 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCATCGAGATATGTGCTAGTGTAAGACAATGTCTA
GGACATAGCATCGACGATAATATGTGATCCA
Found at i:70933722 original size:54 final size:54
Alignment explanation
Indices: 70933657--70933790 Score: 214
Period size: 54 Copynumber: 2.5 Consensus size: 54
70933647 GTCACTATAA
*
70933657 GGGATTTAGCCTGGACTGGTAATCTCAACATTACCTTATGAGTTTACGATAAGG
1 GGGATTTAGCCTGGACTGGTAATCTCAACATTACCTTATGAGTTTAAGATAAGG
* * *
70933711 GGGATTTAGCCTGGACTGCTAATCTCAGCATTACCTTATGAGTTTAAGATACGG
1 GGGATTTAGCCTGGACTGGTAATCTCAACATTACCTTATGAGTTTAAGATAAGG
* *
70933765 GAGATTTAGCCTGGATTGGTAATCTC
1 GGGATTTAGCCTGGACTGGTAATCTC
70933791 GCTGTAGAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (54 bp):
GGGATTTAGCCTGGACTGGTAATCTCAACATTACCTTATGAGTTTAAGATAAGG
Found at i:70937538 original size:38 final size:38
Alignment explanation
Indices: 70937458--70937638 Score: 200
Period size: 38 Copynumber: 4.7 Consensus size: 38
70937448 ATTTTATGTG
* *
70937458 TATCCGGGCTTAAAGACCCGCAGGCTATGTGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTTGTGCTGGTATTA
* * * *
70937498 TATCCGGGTTAAATCCCGCAGCCTTTGTACTAGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTA
* * *
70937536 TATCTGGGTTAAATCCGGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTA
* *
70937574 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTA
* * *
70937612 TATCTGAGTTTAAAGTCCCGTAGGCTT
1 TATCCG-GGTTAAA-TCCCGCAGGCTT
70937639 CGTGTGTACT
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
38 89 0.75
39 11 0.09
40 18 0.15
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTA
Found at i:70937614 original size:76 final size:78
Alignment explanation
Indices: 70937467--70937642 Score: 234
Period size: 76 Copynumber: 2.3 Consensus size: 78
70937457 GTATCCGGGC
* *
70937467 TTAAAGACCCGCAGGCTAT-GTGCTGGTATTATATCCGGGTTAAATCCCGCAGCCTTTGTACTAG
1 TTAAAGTCCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGCCTTAGTACTAG
70937531 TAATATATCTG-GG
65 TAATATATCTGAGG
* * *
70937544 TTAAA-TCCGGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCC-TAGTGCTGG
1 TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCA-GCCTTAGTACTAG
* *
70937607 TATTATATCTGAGT
65 TAATATATCTGAGG
*
70937621 TTAAAGTCCCGTAGGCTTCGTG
1 TTAAAGTCCCGCAGGCTTCGTG
70937643 TGTACTCAGA
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
75 1 0.01
76 57 0.66
77 14 0.16
78 14 0.16
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (78 bp):
TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGCCTTAGTACTAGT
AATATATCTGAGG
Found at i:70943138 original size:40 final size:40
Alignment explanation
Indices: 70943040--70943302 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
70943030 TCCTCGTTCA
* * * ** *
70943040 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
70943079 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
70943119 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
70943159 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
70943199 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
70943239 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
70943279 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70943303 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:70952246 original size:40 final size:40
Alignment explanation
Indices: 70952148--70952450 Score: 344
Period size: 40 Copynumber: 7.6 Consensus size: 40
70952138 TCCTCGTTCA
* * * * *
70952148 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
70952187 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70952227 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70952267 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
70952307 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
70952347 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
70952387 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
70952427 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70952451 CAGCATTCAA
Statistics
Matches: 235, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
39 39 0.17
40 184 0.78
41 12 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:70952459 original size:41 final size:41
Alignment explanation
Indices: 70952382--70952459 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
70952372 TTTGTATCTC
* * *
70952382 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
70952423 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
70952460 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:70970470 original size:29 final size:28
Alignment explanation
Indices: 70970434--70970511 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
70970424 TCATGAGATT
70970434 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
70970464 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
70970491 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
70970512 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:70970729 original size:174 final size:174
Alignment explanation
Indices: 70970464--70971139 Score: 1289
Period size: 174 Copynumber: 3.9 Consensus size: 174
70970454 AAATTGTACA
*
70970464 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
70970529 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCGA
70970594 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
70970638 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
70970703 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCGA
70970768 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
70970812 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
70970877 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCGA
70970942 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
70970986 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
70971051 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCGA
70971116 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
70971140 ACCTTGAGTT
Statistics
Matches: 493, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 493 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:70973063 original size:131 final size:131
Alignment explanation
Indices: 70972829--70973089 Score: 477
Period size: 131 Copynumber: 2.0 Consensus size: 131
70972819 CCACATGCTT
* *
70972829 AATTTCCTAGTATCGTTTCTATGGTCACCGGCATCGGAGATTTAGTGTAACATCTTGAAATAGGG
1 AATTTCCTAGTATCGTTTCTATGGTCACCGGCATCAGAGATTTAGTGTAACATCTTGAAATAGCG
*
70972894 CTTAAACGGAATAGTGGTTGTGAAACCATGAATCTGAGGTCAAAAAAATTATCTTGATTAAGTTT
66 CTTAAACGGAATAGTGGTTGTGAAACCATGAATCTGAGGTCAAAAAAATTATCCTGATTAAGTTT
70972959 G
131 G
*
70972960 AATTTCCTAGTATCGTTTCTATGGTCACCGGCATCAGAGATTTAGTGTAACATCTTGAAATAGCT
1 AATTTCCTAGTATCGTTTCTATGGTCACCGGCATCAGAGATTTAGTGTAACATCTTGAAATAGCG
*
70973025 CTTAAACGGAATAGTGGTTGTGAAACCATGAATTTGAGGTCAAAAAAATTATCCTGATTAAGTTT
66 CTTAAACGGAATAGTGGTTGTGAAACCATGAATCTGAGGTCAAAAAAATTATCCTGATTAAGTTT
70973090 TAAGGTTTAT
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
131 125 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (131 bp):
AATTTCCTAGTATCGTTTCTATGGTCACCGGCATCAGAGATTTAGTGTAACATCTTGAAATAGCG
CTTAAACGGAATAGTGGTTGTGAAACCATGAATCTGAGGTCAAAAAAATTATCCTGATTAAGTTT
G
Found at i:70974325 original size:12 final size:12
Alignment explanation
Indices: 70974308--70974332 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70974298 TTATTATGCA
70974308 AGTATTGTTATT
1 AGTATTGTTATT
70974320 AGTATTGTTATT
1 AGTATTGTTATT
70974332 A
1 A
70974333 TTGAGTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (12 bp):
AGTATTGTTATT
Found at i:70974812 original size:55 final size:55
Alignment explanation
Indices: 70974683--70974879 Score: 240
Period size: 55 Copynumber: 3.6 Consensus size: 55
70974673 TTGGTAAGAT
* * * *
70974683 AAGGATATCATGTAAGACCATGCCATGGCATGGCATTGATAAGTTCTATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * *
70974737 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * * *
70974793 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCTTTGGTGAGTTC-ATAAGG-A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* *
70974845 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
70974880 ATGGTAAATT
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
52 5 0.04
53 31 0.25
54 41 0.33
55 42 0.34
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
Found at i:70977596 original size:16 final size:17
Alignment explanation
Indices: 70977564--70977596 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
70977554 TTGACAGTAA
70977564 GATCTGTATGATGTTAGT
1 GATCTGTAT-ATGTTAGT
70977582 GATCTGTAT-TGTTAG
1 GATCTGTATATGTTAG
70977597 CTATTGCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.06, G:0.27, T:0.45
Consensus pattern (17 bp):
GATCTGTATATGTTAGT
Found at i:70981367 original size:55 final size:54
Alignment explanation
Indices: 70981238--70981434 Score: 218
Period size: 54 Copynumber: 3.6 Consensus size: 54
70981228 TTGGTAAGAT
* * * *
70981238 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
70981292 AAGGAAATCATGTAAGACCATGTCAAGACATGGCGTTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * * *
70981347 AAAGG-TCCCATATAAGACCATGCCAAGGCATGGCATTGGTGATTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
70981400 AAGGATACCACGTAAGACCATGTCAAGATATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
70981435 ATGGTAAGTT
Statistics
Matches: 119, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.26
54 41 0.34
55 39 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Done.