Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 214 of 276
Found at i:70981418 original size:53 final size:54
Alignment explanation
Indices: 70981238--70981449 Score: 214
Period size: 53 Copynumber: 3.9 Consensus size: 54
70981228 TTGGTAAGAT
* * *
70981238 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
70981292 AAGGAAATCATGTAAGACCATGTCAAGACATGGCGTTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * * *
70981347 AAAGG-TCCCATATAAGACCATGCCAAGGCATGGCATTGGTGATTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
70981400 AAGGATACCACGTAAGACCATGTCAAGATATGGCAATGGTAAGTTC-ATAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAA
70981450 AGGAAAAGGT
Statistics
Matches: 131, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
52 4 0.03
53 43 0.33
54 41 0.31
55 39 0.30
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:70983409 original size:24 final size:24
Alignment explanation
Indices: 70983382--70983431 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
70983372 AGGACTAGAG
70983382 TATGTCAATTAGAAATCATTATCC
1 TATGTCAATTAGAAATCATTATCC
*
70983406 TATGTCACTTAGAAATCATTATCC
1 TATGTCAATTAGAAATCATTATCC
70983430 TA
1 TA
70983432 ACTGTTTCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (24 bp):
TATGTCAATTAGAAATCATTATCC
Found at i:70987579 original size:40 final size:40
Alignment explanation
Indices: 70987524--70987667 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
70987514 TATTCGAATG
* * *
70987524 ATATCCGGGTTAAGTCCCGAGGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
70987564 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * * *
70987604 ATATCCGGGCTAAGACCCGAAGGCATCTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACT
*
70987644 ATATCC-GGCTAAATCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
70987668 CTTGAGTTTG
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:70999455 original size:28 final size:27
Alignment explanation
Indices: 70999391--70999542 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
70999381 TTATTAAGTC
* *
70999391 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
70999418 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
70999446 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
70999473 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
70999501 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
70999528 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70999543 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:70999475 original size:55 final size:55
Alignment explanation
Indices: 70999391--70999567 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
70999381 TTATTAAGTC
* * *
70999391 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
70999446 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
70999501 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
70999557 CGCACACTTAG
1 CGCACACTTAG
70999568 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:71008604 original size:90 final size:90
Alignment explanation
Indices: 71008415--71008626 Score: 219
Period size: 90 Copynumber: 2.4 Consensus size: 90
71008405 AAATAGGGTG
* *
71008415 CCAAAGCCATGTCCCAAACATGGTCTTACATGGGACCACACATCGATGCCATATTCCAAATATGG
1 CCAAAGCCATGTCCCAAACATGGTCTTACACGAGACCACACATCGATGCCATATTCCAAATATGG
** * * * * *
71008480 TCTTATATGAAGTCCCTAATTAGTG
66 TCTTATACAAAATCACTAATCAATA
* * * * * * *
71008505 TCGACGCCATGTCCCAGACATGGTCTT-CTACGAGACCTCATATCGATGCCATCTTCCAAATATG
1 CCAAAGCCATGTCCCAAACATGGTCTTAC-ACGAGACCACACATCGATGCCATATTCCAAATATG
* *
71008569 GTGTTATACAAAATCACTTATCAATA
65 GTCTTATACAAAATCACTAATCAATA
* * *
71008595 CCAAAGCCATATCCCTAATATGGTCTTACACG
1 CCAAAGCCATGTCCCAAACATGGTCTTACACG
71008627 GGATCGCGTA
Statistics
Matches: 95, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
89 1 0.01
90 93 0.98
91 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (90 bp):
CCAAAGCCATGTCCCAAACATGGTCTTACACGAGACCACACATCGATGCCATATTCCAAATATGG
TCTTATACAAAATCACTAATCAATA
Found at i:71010037 original size:19 final size:19
Alignment explanation
Indices: 71010013--71010062 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
71010003 GAGACAAGGG
71010013 ACACGCCCGTGTACTCTCA
1 ACACGCCCGTGTACTCTCA
71010032 ACACGCCCGTGTACTCTCA
1 ACACGCCCGTGTACTCTCA
71010051 ACACGCCCGTGT
1 ACACGCCCGTGT
71010063 CCTCCAGCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.20, C:0.42, G:0.18, T:0.20
Consensus pattern (19 bp):
ACACGCCCGTGTACTCTCA
Found at i:71013334 original size:27 final size:27
Alignment explanation
Indices: 71013304--71013382 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
71013294 ATAAATCACA
*
71013304 TAGGGGCAAAATAATTATTTTATCATG
1 TAGGGGCAAAATAATCATTTTATCATG
* *
71013331 TAGGGGCAAAATAGTCATATTATCATG
1 TAGGGGCAAAATAATCATTTTATCATG
*
71013358 TAGGGGCAAAACAATCATTTTATCA
1 TAGGGGCAAAATAATCATTTTATCA
71013383 AATAGGGGTC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (27 bp):
TAGGGGCAAAATAATCATTTTATCATG
Found at i:71013388 original size:27 final size:27
Alignment explanation
Indices: 71013298--71013390 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
71013288 ACAGTCATAA
* *
71013298 ATCACATAGGGGCAAAATAATTATTTT
1 ATCATATAGGGGCAAAATAATCATTTT
* * *
71013325 ATCATGTAGGGGCAAAATAGTCATATT
1 ATCATATAGGGGCAAAATAATCATTTT
* *
71013352 ATCATGTAGGGGCAAAACAATCATTTT
1 ATCATATAGGGGCAAAATAATCATTTT
*
71013379 ATCAAATAGGGG
1 ATCATATAGGGG
71013391 TCTAGGTACA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (27 bp):
ATCATATAGGGGCAAAATAATCATTTT
Found at i:71013858 original size:21 final size:21
Alignment explanation
Indices: 71013834--71013877 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
71013824 ACCAAGAGTT
71013834 AAAA-GGAGCAAAAACGAGCTA
1 AAAAGGGA-CAAAAACGAGCTA
* *
71013855 AAAAGGGACCAAAACGGGCTA
1 AAAAGGGACAAAAACGAGCTA
71013876 AA
1 AA
71013878 TCGAGAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.55, C:0.16, G:0.25, T:0.05
Consensus pattern (21 bp):
AAAAGGGACAAAAACGAGCTA
Found at i:71014919 original size:13 final size:13
Alignment explanation
Indices: 71014903--71014927 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71014893 TTAAATCTGT
71014903 TAATTAGTTTAAA
1 TAATTAGTTTAAA
71014916 TAATTAGTTTAA
1 TAATTAGTTTAA
71014928 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:71020313 original size:7 final size:6
Alignment explanation
Indices: 71020272--71020343 Score: 58
Period size: 6 Copynumber: 12.0 Consensus size: 6
71020262 TGAATCCTCC
* * * *
71020272 TATTTT T-TATT TAGTTT TATTTT TATTTT TCTTTT GATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* *
71020319 CA-TTT TAATTT TATTATTT TATTTT
1 TATTTT TATTTT TA-T-TTT TATTTT
71020344 GAAATACATA
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
5 8 0.16
6 37 0.73
7 1 0.02
8 5 0.10
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:71023270 original size:13 final size:13
Alignment explanation
Indices: 71023254--71023278 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71023244 TTAAATCCGT
71023254 TAATTAGTTTAAA
1 TAATTAGTTTAAA
71023267 TAATTAGTTTAA
1 TAATTAGTTTAA
71023279 TAAACTAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:71033720 original size:40 final size:40
Alignment explanation
Indices: 71033665--71033803 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
71033655 NNNNNNNNNN
71033665 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
71033705 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * * *
71033745 TCCGGGCTATGTCCTGAAGGTATTCGAGCGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
* * *
71033785 T-CTGGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
71033804 TACTTGGCTT
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 15 0.17
40 73 0.83
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:71037506 original size:107 final size:107
Alignment explanation
Indices: 71037320--71037526 Score: 292
Period size: 107 Copynumber: 1.9 Consensus size: 107
71037310 GCATTCATTC
* *
71037320 ATATCATAGACCTCATAAGAATCATAAAATAATTATTTCTATCTCAAATTAGTTTCCTTAAAACC
1 ATATCATAGACCTCATAAGAATCATAAAATAATTATTTCTATCTCAAATTAGTGTCCTCAAAACC
*
71037385 ACTGTTCCGACTAGGCCCT-AATTCAGGATGTTACATGCATAA
66 ACTGTTCCAACTAGGCCCTGAATT-AGGATGTTACATGCATAA
* * * * *
71037427 ATATCCTAGACTTTATAATAATCATAAAATAATTATTTCTATCTCAAATTTGTGGT-CTCAAAAC
1 ATATCATAGACCTCATAAGAATCATAAAATAATTATTTCTATCTCAAATTAGT-GTCCTCAAAAC
* *
71037491 CACTGTTCCAACTAGGCCTTGAATTGGGATGTTACA
65 CACTGTTCCAACTAGGCCCTGAATTAGGATGTTACA
71037527 ATTCTCCCCC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 83 0.94
108 5 0.06
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (107 bp):
ATATCATAGACCTCATAAGAATCATAAAATAATTATTTCTATCTCAAATTAGTGTCCTCAAAACC
ACTGTTCCAACTAGGCCCTGAATTAGGATGTTACATGCATAA
Found at i:71043263 original size:46 final size:46
Alignment explanation
Indices: 71043200--71043415 Score: 233
Period size: 46 Copynumber: 4.7 Consensus size: 46
71043190 GGCATCCGTG
*
71043200 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAA
* * * * * * *
71043246 CTCATTTAGTTGAGTCCGATTTCGC-GA--GATGTAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATGC--CCGAA
* *
71043293 CTCGTTGACTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCC-AA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG-CCCGAA
* * *
71043339 CTCGTTGAGTTGAGTCCGAGTTCACTTTTGGATGCAAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAA
*
71043385 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71043416 GCGGGTTACA
Statistics
Matches: 137, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.04
45 7 0.05
46 89 0.65
47 26 0.19
48 3 0.02
49 1 0.01
50 6 0.04
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAA
Found at i:71043306 original size:47 final size:47
Alignment explanation
Indices: 71043147--71043315 Score: 159
Period size: 47 Copynumber: 3.6 Consensus size: 47
71043137 ATGGTTGAGT
* *
71043147 TCCGAACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGCA
** * * *
71043194 TCCGTGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGC-GA--GATG-TAACTAGGCA
* * *
71043241 -CCGAACTCATTTAGTTGAGTCCGATTTCGCGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGCA
* *
71043287 TCCGAACTCGTTGACTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
71043316 ACTTATGGAT
Statistics
Matches: 93, Mismatches: 20, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 24 0.26
47 49 0.53
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGCA
Found at i:71043307 original size:93 final size:94
Alignment explanation
Indices: 71043148--71043361 Score: 324
Period size: 93 Copynumber: 2.3 Consensus size: 94
71043138 TGGTTGAGTT
* * ** *
71043148 CCGAACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGTGCTCGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGCATCCGAACTCGTTGACTTGA
*
71043213 GTCCGAGTTCACTTATGGATGCGAATG-C
66 GTCCGAGTTCACTTATGGATGCAAATGTC
* * *
71043241 CCGAACTCATTTAGTTGAGTCCGATTTCGCGAGATGTAACTAGGCATCCGAACTCGTTGACTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGCATCCGAACTCGTTGACTTGA
*
71043306 GTCTGAGTTCACTTATGGATGCAAATGTC
66 GTCCGAGTTCACTTATGGATGCAAATGTC
71043335 CC-AACTCGTTGAGTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
71043362 ACTTTTGGAT
Statistics
Matches: 107, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
93 104 0.97
94 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (94 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTAGGCATCCGAACTCGTTGACTTGA
GTCCGAGTTCACTTATGGATGCAAATGTC
Found at i:71051798 original size:90 final size:90
Alignment explanation
Indices: 71051614--71051830 Score: 229
Period size: 90 Copynumber: 2.4 Consensus size: 90
71051604 CCAAATAGGG
* * * * * *
71051614 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGTACTACACATCGATGTCATATTCCAAATAT
1 TGCCGAAGCCATGTCCCAAACATGGTCTTACACGGGACTACACATCAATGCCATATTCCAAATAT
* * * *
71051679 TGTCTTATACGAAGTCTCGAATTAG
66 GGTCTTATACGAAATCACGAATTAA
* * * *
71051704 TGCCGACGCCATGTCTCAAACATGGTCTTATACGGGACCT-CATATCAATGCCATATTCCAAATA
1 TGCCGAAGCCATGTCCCAAACATGGTCTTACACGGGA-CTACACATCAATGCCATATTCCAAATA
**
71051768 TGGTCTTATACGAAATCACTTATTAA
65 TGGTCTTATACGAAATCACGAATTAA
** ** *
71051794 TGCCGAAGCCAAATCCCTGATATGGTCTTACACGGGA
1 TGCCGAAGCCATGTCCCAAACATGGTCTTACACGGGA
71051831 TCGTGTATCG
Statistics
Matches: 102, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
90 100 0.98
91 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (90 bp):
TGCCGAAGCCATGTCCCAAACATGGTCTTACACGGGACTACACATCAATGCCATATTCCAAATAT
GGTCTTATACGAAATCACGAATTAA
Found at i:71055044 original size:16 final size:16
Alignment explanation
Indices: 71055010--71055046 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
71055000 TTTTAATATG
*
71055010 ATATAAATTATATAAT
1 ATATAAATTATAAAAT
71055026 ATATAAATTA-AAAAT
1 ATATAAATTATAAAAT
71055041 -TATAAA
1 ATATAAA
71055047 AACCCAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 6 0.30
15 4 0.20
16 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAATTATAAAAT
Found at i:71057393 original size:29 final size:29
Alignment explanation
Indices: 71057360--71057460 Score: 139
Period size: 29 Copynumber: 3.5 Consensus size: 29
71057350 TACGCGTAGG
* * *
71057360 GGTTCCTTGATTTTCTCTTCTATTAAAGT
1 GGTTCCTTGATTTTCTTTTCTGTTGAAGT
* *
71057389 GGTTCCTTGATTTACTTTTTTGTTGAAGT
1 GGTTCCTTGATTTTCTTTTCTGTTGAAGT
* *
71057418 GGTTCATTGATTTCCTTTTCTGTTGAAGT
1 GGTTCCTTGATTTTCTTTTCTGTTGAAGT
71057447 GGTTCCTTGATTTT
1 GGTTCCTTGATTTT
71057461 TGCTTATCGT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.14, C:0.14, G:0.19, T:0.53
Consensus pattern (29 bp):
GGTTCCTTGATTTTCTTTTCTGTTGAAGT
Found at i:71057786 original size:31 final size:31
Alignment explanation
Indices: 71057746--71057902 Score: 124
Period size: 31 Copynumber: 5.2 Consensus size: 31
71057736 TTCGAGCTCT
*
71057746 ATGTAGGTGAGCTGTTATAGCTGTGAGCTTC
1 ATGTAGGTGAGCTGTTATAGCTATGAGCTTC
* * * * * * *
71057777 ATGTTGGTGAGCTATGATAGTTGTAAGCTCC
1 ATGTAGGTGAGCTGTTATAGCTATGAGCTTC
* * *
71057808 ATGTAAGCGAG--G-AATA-CATATGAGCTTC
1 ATGTAGGTGAGCTGTTATAGC-TATGAGCTTC
* *
71057836 ATGGAGGTGAGCTGTTATAGCTACGAGCTTC
1 ATGTAGGTGAGCTGTTATAGCTATGAGCTTC
* * * *
71057867 ATGTTGGTGAACTGTTATAGCTACGAGCTCC
1 ATGTAGGTGAGCTGTTATAGCTATGAGCTTC
71057898 ATGTA
1 ATGTA
71057903 AGAGAGCAAT
Statistics
Matches: 96, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
28 18 0.19
30 1 0.01
31 76 0.79
32 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.32
Consensus pattern (31 bp):
ATGTAGGTGAGCTGTTATAGCTATGAGCTTC
Found at i:71057826 original size:90 final size:90
Alignment explanation
Indices: 71057712--71057937 Score: 258
Period size: 90 Copynumber: 2.5 Consensus size: 90
71057702 GTGAAGTATG
* * **
71057712 AGCTCCATGTAGGCAAGCAATACATTCGAGCTCTATGTAGGTGAGCTGTTATAGCTGTGAGCTTC
1 AGCTCCATGTAAGCGAGCAATACATTCGAGCTCTATGTAGGTGAGCTGTTATAGCTACGAGCTTC
* * **
71057777 ATGTTGGTGAGCTATGATAGTTGTA
66 ATGTTGGTGAACTATGATAGCTACA
* *
71057802 AGCTCCATGTAAGCGAGGAATACATAT-GAGCT-TCATGGAGGTGAGCTGTTATAGCTACGAGCT
1 AGCTCCATGTAAGCGAGCAATACAT-TCGAGCTCT-ATGTAGGTGAGCTGTTATAGCTACGAGCT
* * *
71057865 TCATGTTGGTGAACTGTTATAGCTACG
64 TCATGTTGGTGAACTATGATAGCTACA
* * * * *
71057892 AGCTCCATGTAAGAGAGCAATGCATGCGAGCTCCATGTAGGCGAGC
1 AGCTCCATGTAAGCGAGCAATACATTCGAGCTCTATGTAGGTGAGC
71057938 AATGCATGCG
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
89 1 0.01
90 110 0.98
91 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (90 bp):
AGCTCCATGTAAGCGAGCAATACATTCGAGCTCTATGTAGGTGAGCTGTTATAGCTACGAGCTTC
ATGTTGGTGAACTATGATAGCTACA
Found at i:71057926 original size:28 final size:28
Alignment explanation
Indices: 71057890--71057958 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
71057880 GTTATAGCTA
71057890 CGAGCTCCATGTAAGAGAGCAATGCATG
1 CGAGCTCCATGTAAGAGAGCAATGCATG
* *
71057918 CGAGCTCCATGTAGGCGAGCAATGCATG
1 CGAGCTCCATGTAAGAGAGCAATGCATG
* *
71057946 CGAACTCTATGTA
1 CGAGCTCCATGTA
71057959 GGTGAGCTCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (28 bp):
CGAGCTCCATGTAAGAGAGCAATGCATG
Found at i:71064760 original size:14 final size:14
Alignment explanation
Indices: 71064743--71064770 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
71064733 TTAGTACATA
71064743 ATAGAATAAAATTT
1 ATAGAATAAAATTT
71064757 ATAGAATAAAATTT
1 ATAGAATAAAATTT
71064771 GATTTAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
ATAGAATAAAATTT
Found at i:71074909 original size:71 final size:71
Alignment explanation
Indices: 71074777--71074913 Score: 170
Period size: 71 Copynumber: 1.9 Consensus size: 71
71074767 CTTAAGTGCT
* * * * **
71074777 ATCTCGGTATTTTGGAAATGGGTTTCTGACACGAAGATGAATTTTGAATGAATCTTTTCAAGGTT
1 ATCTCGGTATTTTGAAAAAGAGTTTCTGACACGAAGATGAATTTAGAATGAATCTCGTCAAGGTT
71074842 CTACCA
66 CTACCA
* *
71074848 ATCTTGGTATTTTGAAAAAGAGTTTCTGACACCG-AGATGAATTTAGAGA-GCATCTCGTCAAGG
1 ATCTCGGTATTTTGAAAAAGAGTTTCTGACA-CGAAGATGAATTTAGA-ATGAATCTCGTCAAGG
71074911 TTC
64 TTC
71074914 AGCATCTTCT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
71 53 0.95
72 3 0.05
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (71 bp):
ATCTCGGTATTTTGAAAAAGAGTTTCTGACACGAAGATGAATTTAGAATGAATCTCGTCAAGGTT
CTACCA
Found at i:71086514 original size:79 final size:78
Alignment explanation
Indices: 71086412--71086634 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
71086402 GCTCCTCGTT
* *
71086412 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
71086477 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
71086492 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
71086556 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
71086570 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
71086633 GA
63 GA
71086635 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:71086529 original size:39 final size:40
Alignment explanation
Indices: 71086412--71086634 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
71086402 GCTCCTCGTT
* *
71086412 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
71086452 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
71086492 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
71086531 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
71086570 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
71086611 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71086635 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:71094433 original size:40 final size:40
Alignment explanation
Indices: 71094389--71094650 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
71094379 GCTCCTCGTT
* *
71094389 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
71094429 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
71094469 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
71094508 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
71094547 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
71094586 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
71094627 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71094651 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:71098851 original size:25 final size:25
Alignment explanation
Indices: 71098817--71098864 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
71098807 GCCAGTGTAA
*
71098817 GACCATGTTTGGGACATGGCATCGG
1 GACCATGTTTGGAACATGGCATCGG
71098842 GACCATGTTTGGAACATGGCATC
1 GACCATGTTTGGAACATGGCATC
71098865 AGCAATTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (25 bp):
GACCATGTTTGGAACATGGCATCGG
Found at i:71099441 original size:13 final size:13
Alignment explanation
Indices: 71099423--71099447 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71099413 GATAGATGTG
71099423 ATACTCATTTTGC
1 ATACTCATTTTGC
71099436 ATACTCATTTTG
1 ATACTCATTTTG
71099448 TATAGGCCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (13 bp):
ATACTCATTTTGC
Found at i:71109429 original size:48 final size:48
Alignment explanation
Indices: 71109354--71109636 Score: 268
Period size: 48 Copynumber: 5.9 Consensus size: 48
71109344 GACCTTTGGG
* * *
71109354 TGATATGTGTGCTAGTGTAAGATCATGTCTGGGACATGGCATCGGCCA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * * *
71109402 CGATATGAGAGCCT-GTGTAAGTCCATGTTTGGAACATGGCATTGACAA
1 TGATATGAGAG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * *
71109450 TG-TAATGATAGCTAGTGTAAGACCATGTTTGGTACATGGCATCGG-CA
1 TGAT-ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * *
71109497 TTGATGTGTGTGCTAGCGTAAGACCATGTCTAGGACATGGCATCGG-TA
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
71109545 TTGAGACGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCCT
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * *
71109594 TGACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
71109637 AGCAATTCAT
Statistics
Matches: 188, Mismatches: 41, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
47 4 0.02
48 181 0.96
49 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:71109619 original size:144 final size:144
Alignment explanation
Indices: 71109354--71109636 Score: 351
Period size: 144 Copynumber: 2.0 Consensus size: 144
71109344 GACCTTTGGG
* * * * *
71109354 TGATATGTGTGCTAGTGTAAGATCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCTGTG
1 TGATATGTGTGCTAGCGTAAGACCATGTCTAGGACATGGCATCGGCCACGAGACGAGAGCCTGTG
* * * *
71109419 TAAGTCCATGTTTGGAACATGGCATTGACAATGTAATGATAGCTAGTGTAAGACCATGTTTGGTA
66 TAAGACCATGTCTGGAACATGGCATCGACAATGTAATGATAGCTAGTGTAAGACCATGTTTGGGA
71109484 CATGGCATCGGCAT
131 CATGGCATCGGCAT
* * *
71109498 TGATGTGTGTGCTAGCGTAAGACCATGTCTAGGACATGGCATCGG-TATTGAGACGAGAG-CTAG
1 TGATATGTGTGCTAGCGTAAGACCATGTCTAGGACATGGCATCGGCCA-CGAGACGAGAGCCT-G
* **
71109561 TGTAAGACCATGTCT-GAGACATGGCATCGGCCTTG-ACATG-TGAGCTAGTGTAAGACCATGTT
64 TGTAAGACCATGTCTGGA-ACATGGCATCGACAATGTA-ATGAT-AGCTAGTGTAAGACCATGTT
71109623 TGGGACATGGCATC
126 TGGGACATGGCATC
71109637 AGCAATTCAT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
143 7 0.06
144 112 0.94
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (144 bp):
TGATATGTGTGCTAGCGTAAGACCATGTCTAGGACATGGCATCGGCCACGAGACGAGAGCCTGTG
TAAGACCATGTCTGGAACATGGCATCGACAATGTAATGATAGCTAGTGTAAGACCATGTTTGGGA
CATGGCATCGGCAT
Found at i:71118849 original size:68 final size:67
Alignment explanation
Indices: 71118777--71118926 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
71118767 CATCATGTGT
* * * *
71118777 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
71118839 ATGTAG
62 ATGTAG
** * *
71118845 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
71118910 AG
66 AG
71118912 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
71118927 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:71118882 original size:64 final size:64
Alignment explanation
Indices: 71118801--71118984 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
71118791 AGACATTATG
* *
71118801 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
71118865 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71118930 AA
63 AA
* * * *
71118932 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
71118985 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71130050 original size:27 final size:27
Alignment explanation
Indices: 71130015--71130082 Score: 127
Period size: 27 Copynumber: 2.5 Consensus size: 27
71130005 CTATAGAACC
*
71130015 CAAATTTTGCACCTATTGGAATTTAGT
1 CAAATTTTGCACCTATTGCAATTTAGT
71130042 CAAATTTTGCACCTATTGCAATTTAGT
1 CAAATTTTGCACCTATTGCAATTTAGT
71130069 CAAATTTTGCACCT
1 CAAATTTTGCACCT
71130083 TTAGTCAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (27 bp):
CAAATTTTGCACCTATTGCAATTTAGT
Found at i:71130099 original size:19 final size:19
Alignment explanation
Indices: 71130063--71130099 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
71130053 CCTATTGCAA
**
71130063 TTTAGTCAAATTTTGCACC
1 TTTAGTCAAATTGAGCACC
71130082 TTTAGTCAAATTGAGCAC
1 TTTAGTCAAATTGAGCAC
71130100 TCAATCGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (19 bp):
TTTAGTCAAATTGAGCACC
Found at i:71151121 original size:79 final size:78
Alignment explanation
Indices: 71151019--71151234 Score: 233
Period size: 79 Copynumber: 2.7 Consensus size: 78
71151009 GCTCCTCATT
*
71151019 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
71151084 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
71151099 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCTGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCGG
* *
71151162 AATTAGTATCTTGCA
64 AATTAGTAACTCGCA
* * * * *
71151177 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTA
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTA
71151235 GTCCGGACAT
Statistics
Matches: 116, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 45 0.39
79 50 0.43
80 20 0.17
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGAA
TTAGTAACTCGCA
Found at i:71151136 original size:39 final size:40
Alignment explanation
Indices: 71151019--71151241 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
71151009 GCTCCTCATT
* *
71151019 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
71151059 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
71151099 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
71151138 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
71151177 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
*
71151218 C-AA-GCCTTCGGGACTTAGTCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71151242 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:71152564 original size:98 final size:97
Alignment explanation
Indices: 71152390--71152584 Score: 372
Period size: 98 Copynumber: 2.0 Consensus size: 97
71152380 AAAAATTTTC
*
71152390 TCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGGAAACATCTACACACATTTTTTTTTGTATT
1 TCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGGAAACAACTACACACATTTTTTTTTGTATT
71152455 CATCATACTCCTTTTCATTATTTTATGCCCAT
66 CATCATACTCCTTTTCATTATTTTATGCCCAT
71152487 TCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGGAAAACAACTACACACATTTTTTTTTGTAT
1 TCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGG-AAACAACTACACACATTTTTTTTTGTAT
71152552 TCATCATACTCCTTTTCATTATTTTATGCCCAT
65 TCATCATACTCCTTTTCATTATTTTATGCCCAT
71152585 GCCCCTTATT
Statistics
Matches: 96, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
97 36 0.38
98 60 0.62
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.43
Consensus pattern (97 bp):
TCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGGAAACAACTACACACATTTTTTTTTGTATT
CATCATACTCCTTTTCATTATTTTATGCCCAT
Found at i:71158954 original size:14 final size:14
Alignment explanation
Indices: 71158937--71158964 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
71158927 TATTAAAAGG
71158937 AAATAAATAAATAA
1 AAATAAATAAATAA
71158951 AAATAAATAAATAA
1 AAATAAATAAATAA
71158965 TTTCAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAATAAATAA
Found at i:71166681 original size:29 final size:29
Alignment explanation
Indices: 71166639--71166697 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
71166629 TTCACATAAA
*
71166639 AGTGAGCTCATGTGACATTGATATATCGT
1 AGTGAGCTCATGTGACATAGATATATCGT
71166668 AGTGAGCTCATGTGACATAGATATATCGT
1 AGTGAGCTCATGTGACATAGATATATCGT
71166697 A
1 A
71166698 TGATTTCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (29 bp):
AGTGAGCTCATGTGACATAGATATATCGT
Found at i:71167124 original size:47 final size:47
Alignment explanation
Indices: 71167046--71167168 Score: 158
Period size: 47 Copynumber: 2.6 Consensus size: 47
71167036 CCCTTCGGGA
* * * * *
71167046 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGG-C
*
71167094 CTT-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
71167140 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
71167169 TATTCAAATA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
46 4 0.06
47 40 0.61
48 3 0.05
49 19 0.29
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
Found at i:71175384 original size:37 final size:37
Alignment explanation
Indices: 71175334--71175412 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
71175324 TTATTACGAA
* *
71175334 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
71175371 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
71175408 GTCTT
1 GTCTT
71175413 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:71175609 original size:47 final size:47
Alignment explanation
Indices: 71175531--71176489 Score: 1810
Period size: 47 Copynumber: 20.4 Consensus size: 47
71175521 CCCTTCGGGA
** * * * * * *
71175531 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71175578 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71175625 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71175672 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71175719 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71175766 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71175813 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71175860 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71175907 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71175954 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176001 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176048 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176095 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176142 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176189 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176236 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176283 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176330 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176377 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71176424 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71176471 CTTATCACATATATACACT
1 CTTATCACACATATACACT
71176490 GTCTTGGCTG
Statistics
Matches: 899, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 899 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71185146 original size:30 final size:30
Alignment explanation
Indices: 71185112--71185177 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
71185102 GCTGTAGGGG
* *
71185112 TCACATGGTCGTGTCTCCAGGCTGTGTGAC
1 TCACACGGTCGTGTCTCCAGGCCGTGTGAC
* *
71185142 TCACACGGTCTTGTGTCCAGGCCGTGTGAC
1 TCACACGGTCGTGTCTCCAGGCCGTGTGAC
71185172 TCACAC
1 TCACAC
71185178 AGTCAATGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.15, C:0.30, G:0.27, T:0.27
Consensus pattern (30 bp):
TCACACGGTCGTGTCTCCAGGCCGTGTGAC
Found at i:71186345 original size:30 final size:30
Alignment explanation
Indices: 71186290--71186351 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
71186280 CACTAAGAAA
71186290 GTTTCATATACATGAATCATCCATTT-CAT
1 GTTTCATATACATGAATCATCCATTTCCAT
71186319 GTTTCAATATATCATGTAAT-AT-CATTTCCAT
1 GTTTC-ATATA-CATG-AATCATCCATTTCCAT
71186350 GT
1 GT
71186352 ATTTCATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.17
30 10 0.34
31 11 0.38
32 3 0.10
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (30 bp):
GTTTCATATACATGAATCATCCATTTCCAT
Found at i:71186557 original size:25 final size:24
Alignment explanation
Indices: 71186529--71186606 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 24
71186519 GGATCAGTAT
71186529 GCTCTCACGAGCTATAAATCGATAA
1 GCTCTCACGAGCTA-AAATCGATAA
* * *
71186554 GCTCAT-ACGAGCTGAGAATCGGTAG
1 GCTC-TCACGAGCT-AAAATCGATAA
**
71186579 GCTCTCACGAGCTGCAATCGATAA
1 GCTCTCACGAGCTAAAATCGATAA
71186603 GCTC
1 GCTC
71186607 ATATGAGCTG
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
24 12 0.28
25 29 0.67
26 2 0.05
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (24 bp):
GCTCTCACGAGCTAAAATCGATAA
Found at i:71186583 original size:50 final size:49
Alignment explanation
Indices: 71186504--71186623 Score: 161
Period size: 50 Copynumber: 2.4 Consensus size: 49
71186494 GTACATGTAT
* * *
71186504 GCTCATACGAGCT-ATGGATCAGTATGCTCTCACGAGCTATAAATCGATAA
1 GCTCATACGAGCTGA-GAATCAGTAGGCTCTCACGAGCT-GAAATCGATAA
* *
71186554 GCTCATACGAGCTGAGAATCGGTAGGCTCTCACGAGCTGCAATCGATAA
1 GCTCATACGAGCTGAGAATCAGTAGGCTCTCACGAGCTGAAATCGATAA
*
71186603 GCTCATATGAGCTGAGAATCA
1 GCTCATACGAGCTGAGAATCA
71186624 ATAATGCCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
49 28 0.45
50 33 0.53
51 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (49 bp):
GCTCATACGAGCTGAGAATCAGTAGGCTCTCACGAGCTGAAATCGATAA
Found at i:71186614 original size:24 final size:25
Alignment explanation
Indices: 71186545--71186627 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 25
71186535 ACGAGCTATA
*
71186545 AATCGATAAGCTCATACGAGCTGAG
1 AATCGATAAGCTCATACGAGCTGAC
* *
71186570 AATCGGTAGGCTC-TCACGAGCTG-C
1 AATCGATAAGCTCAT-ACGAGCTGAC
* *
71186594 AATCGATAAGCTCATATGAGCTGAG
1 AATCGATAAGCTCATACGAGCTGAC
*
71186619 AATCAATAA
1 AATCGATAA
71186628 TGCCTAATGA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
24 19 0.40
25 28 0.60
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (25 bp):
AATCGATAAGCTCATACGAGCTGAC
Found at i:71194189 original size:25 final size:25
Alignment explanation
Indices: 71194165--71194274 Score: 75
Period size: 25 Copynumber: 4.4 Consensus size: 25
71194155 ATACATGTAT
*
71194165 GCTCATACGAGCTATGAATTGGTAT
1 GCTCATACGAGCTATGAATTGGTAA
* * * *
71194190 GCTC-TCACGCGCTGTAAATCGGTAA
1 GCTCAT-ACGAGCTATGAATTGGTAA
*
71194215 GCTCATACAAGCTGA-GAATTGGTAA
1 GCTCATACGAGCT-ATGAATTGGTAA
* * * *
71194240 GCTC-TCATGAGCTA-AAACTGGAAA
1 GCTCAT-ACGAGCTATGAATTGGTAA
71194264 GCTCATACGAG
1 GCTCATACGAG
71194275 TTGAGAATCG
Statistics
Matches: 64, Mismatches: 16, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
24 18 0.28
25 45 0.70
26 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTATGAATTGGTAA
Found at i:71194281 original size:49 final size:50
Alignment explanation
Indices: 71194165--71194288 Score: 137
Period size: 50 Copynumber: 2.5 Consensus size: 50
71194155 ATACATGTAT
* * * *
71194165 GCTCATACGAGCT-ATGAATTGGTATGCTCTCACGCGCTGTAAATCGGTAA
1 GCTCATACGAGCTGA-GAATTGGTAAGCTCTCACGAGCTGAAAATCGGAAA
* *
71194215 GCTCATACAAGCTGAGAATTGGTAAGCTCTCATGAGCT-AAAA-CTGGAAA
1 GCTCATACGAGCTGAGAATTGGTAAGCTCTCACGAGCTGAAAATC-GGAAA
* *
71194264 GCTCATACGAGTTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATTGGTAA
71194289 TCCCTAATGA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.02
49 29 0.46
50 32 0.51
51 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (50 bp):
GCTCATACGAGCTGAGAATTGGTAAGCTCTCACGAGCTGAAAATCGGAAA
Found at i:71213224 original size:40 final size:39
Alignment explanation
Indices: 71213117--71213244 Score: 143
Period size: 38 Copynumber: 3.3 Consensus size: 39
71213107 GCAGGCTATA
* * *
71213117 TGCTGGAATTATATCTG-GGTTAAATTCCGCAGGCTTCG
1 TGCTGGTATTATATCTGAGGTTAAATCCCGTAGGCTTCG
* * * * *
71213155 TGCGGGTAATATATC-CAGGTTAAATCCCGTATGCTTAG
1 TGCTGGTATTATATCTGAGGTTAAATCCCGTAGGCTTCG
*
71213193 TGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGCTTCG
1 TGCTGGTATTATATCTGAGGTTAAA-TCCCGTAGGCTTCG
*
71213233 TGCTGGTGTTAT
1 TGCTGGTATTAT
71213245 GTTTGGGTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
38 42 0.58
39 7 0.10
40 23 0.32
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (39 bp):
TGCTGGTATTATATCTGAGGTTAAATCCCGTAGGCTTCG
Found at i:71222900 original size:21 final size:21
Alignment explanation
Indices: 71222876--71222946 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 21
71222866 TATCACGAAC
71222876 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* *
71222897 TCAGACGTCACATATATC-ATGAACT
1 TCAGAC--CACA-A-CTCAATG-AGT
71222922 T-AGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
71222942 TCAGA
1 TCAGA
71222947 TTTCATAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 5 0.13
21 13 0.33
22 4 0.10
23 4 0.10
24 8 0.21
25 5 0.13
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.23
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:71222908 original size:45 final size:45
Alignment explanation
Indices: 71222858--71222946 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
71222848 TAAAACATGT
71222858 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
1 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
* *
71222903 GTCACATATATCATGAACTTAGACCACAACTCAATGAGTTCAGA
1 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
71222947 TTTCATAATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.22
Consensus pattern (45 bp):
GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
Found at i:71224922 original size:45 final size:45
Alignment explanation
Indices: 71224863--71224949 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
71224853 CCAAAACATG
*
71224863 TGTCATATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
* *
71224908 TGTCACATATATCATGAACTCAGACCATAACTCAATGAGTTC
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTC
71224950 CGATCACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:71227699 original size:28 final size:30
Alignment explanation
Indices: 71227664--71227732 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 30
71227654 CAGCTTTAAC
71227664 TCATAATA-ACATCATCAGAATAAAACAAA
1 TCATAATATACATCATCAGAATAAAACAAA
* *
71227693 TCTAATAAGTATATATCATCAGATTAAAACAAA
1 TC--ATAA-TATACATCATCAGAATAAAACAAA
71227726 TC-TAATA
1 TCATAATA
71227733 GGTGTATCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
29 4 0.12
30 3 0.09
31 4 0.12
32 2 0.06
33 21 0.62
ACGTcount: A:0.54, C:0.14, G:0.04, T:0.28
Consensus pattern (30 bp):
TCATAATATACATCATCAGAATAAAACAAA
Found at i:71238785 original size:40 final size:39
Alignment explanation
Indices: 71238612--71238834 Score: 217
Period size: 39 Copynumber: 5.6 Consensus size: 39
71238602 TTGAATGATG
*
71238612 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* * *
71238651 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAA
* *
71238691 TTCGGGCTAAG-CCGAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCG-AAGGCATTTGTGCGAGATACTAAA
* *
71238730 TCCGGGCTAAGCCCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
*
71238769 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
71238810 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
71238835 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
38 3 0.02
39 83 0.52
40 60 0.38
41 12 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:71238856 original size:79 final size:79
Alignment explanation
Indices: 71238706--71238867 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
71238696 GCTAAGCCGA
* * ** *
71238706 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGTATTTGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATC
*
71238771 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
*
71238785 AAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTA
1 AAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTA
* *
71238847 TATCC-GGTTAAATTCCG
62 AATCCGGGTTAAATCCCG
71238864 AAGG
1 AAGG
71238868 TACGTGATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 43 0.61
80 24 0.34
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATC
CGGGTTAAATCCCG
Found at i:71243606 original size:45 final size:45
Alignment explanation
Indices: 71243538--71243623 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
71243528 CCAAAACATG
71243538 TGTCACATACATCATGAAATCAGACCACAACTCAATGAGTTTATA
1 TGTCACATACATCATGAAATCAGACCACAACTCAATGAGTTTATA
* *
71243583 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTT
1 TGTCACATACATCATGAAATCAGACCACAACTCAATGAGTT
71243624 CAGATCACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (45 bp):
TGTCACATACATCATGAAATCAGACCACAACTCAATGAGTTTATA
Found at i:71252407 original size:28 final size:28
Alignment explanation
Indices: 71252309--71252410 Score: 168
Period size: 28 Copynumber: 3.6 Consensus size: 28
71252299 ATAGTAAGTC
*
71252309 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
71252337 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
71252366 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
71252394 TGCACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
71252411 GCAATTTAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 42 0.61
29 27 0.39
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71252429 original size:57 final size:57
Alignment explanation
Indices: 71252311--71252436 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 57
71252301 AGTAAGTCCG
* * *
71252311 CACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCA
* * * *
71252368 CACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAACCCA
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACCCA
71252425 CACACTTAGTGC
1 CACACTTAGTGC
71252437 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 58 0.95
58 3 0.05
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.29
Consensus pattern (57 bp):
CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCA
Found at i:71255722 original size:33 final size:33
Alignment explanation
Indices: 71255670--71255766 Score: 140
Period size: 33 Copynumber: 2.9 Consensus size: 33
71255660 TACAGTAACG
* * *
71255670 GTCTGGGCTCTGAGCCCTATTCAATAATAGTACA
1 GTCTGGGC-CTAAGCCCTATGCAGTAATAGTACA
*
71255704 GTCTGGGCCTAAGCCCTATGCAGTAACAGTACA
1 GTCTGGGCCTAAGCCCTATGCAGTAATAGTACA
*
71255737 GTCTGGGCCTAAGCCTTATGCAGTAATAGT
1 GTCTGGGCCTAAGCCCTATGCAGTAATAGT
71255767 GTAGGCCTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 49 0.86
34 8 0.14
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (33 bp):
GTCTGGGCCTAAGCCCTATGCAGTAATAGTACA
Found at i:71262141 original size:3 final size:3
Alignment explanation
Indices: 71262054--71262130 Score: 50
Period size: 3 Copynumber: 24.3 Consensus size: 3
71262044 ATCAAATGAC
* *
71262054 AAT AAT -AT AAT AA- ATAT AAC AAT AAGA AAT AAT AAT AATT CAATT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AA-T AAT AAT AAT AA-T -AA-T
* *
71262099 AAT AAT ACT ATAT AAT AAT AAT GAT AAT AAT A
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT A
71262131 GTGAAATAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
2 3 0.05
3 44 0.75
4 8 0.14
5 4 0.07
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:71262575 original size:12 final size:12
Alignment explanation
Indices: 71262558--71262586 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
71262548 CAAAATTTGG
71262558 AGTACATTATGT
1 AGTACATTATGT
71262570 AGTACATTATGT
1 AGTACATTATGT
71262582 AGTAC
1 AGTAC
71262587 TTAAAAGCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.38
Consensus pattern (12 bp):
AGTACATTATGT
Found at i:71263451 original size:15 final size:15
Alignment explanation
Indices: 71263433--71263469 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
71263423 TTAGTTTTTT
71263433 TTAGGTTTTGGGCTA
1 TTAGGTTTTGGGCTA
* *
71263448 TTAGGCTTTGGGCTC
1 TTAGGTTTTGGGCTA
71263463 TTAGGTT
1 TTAGGTT
71263470 AATATTTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.32, T:0.46
Consensus pattern (15 bp):
TTAGGTTTTGGGCTA
Found at i:71263987 original size:94 final size:94
Alignment explanation
Indices: 71263847--71264488 Score: 709
Period size: 94 Copynumber: 6.8 Consensus size: 94
71263837 GTGTCATAGT
* * * * * * *
71263847 TTCATCTTGCTCCATTGCAATTTCTAGGTGATAAGATTTACTATTGTAGTTTCATTCCAACCCAC
1 TTCATCTTGCTTCACTACAACTTCAAGGAGATAAGATTCACTATTGTAGTTTCATTCCAACCCAC
*
71263912 TCCAACTTCAGGGGTATAGGATTTGTAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* *
71263941 TTCATCTTGCTTCACTACAATTTCAAGGAGATAAGATTCACAATTGTAGTTTCATTCCAACCCAC
1 TTCATCTTGCTTCACTACAACTTCAAGGAGATAAGATTCACTATTGTAGTTTCATTCCAACCCAC
* *
71264006 TGTAACTTTAGGGGTATAGGATTTGTAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* ** ** * * ** *
71264035 TTCATCTTGCTCCACTACAACTTCGGGGAGATAAGATTTGCTATGGTAGCTTCATTTTAACCCGC
1 TTCATCTTGCTTCACTACAACTTCAAGGAGATAAGATTCACTATTGTAGTTTCATTCCAACCCAC
*
71264100 TGCAACTTTAGGGGTATAGGATTTGTAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* * * *
71264129 TTCATCTTGC-TCTACTTCAACTTCAAGGAGATAAGATTCGCTATGGTAGCTTT-ATTCCAACCG
1 TTCATCTTGCTTC-ACTACAACTTCAAGGAGATAAGATTCACTATTGTAG-TTTCATTCCAACCC
* ** * *
71264192 ACTACAACTTCAGGGGTATAAAATTTATGGC
64 ACTGCAACTTCAGGGGTATAGGATTTGTAGC
* * * * ** * * *
71264223 TTCATCTTGCTCCACCATATCTTCAAGGAGATAAGATTTTCCATTATAGTTTCATTCCAACCCAT
1 TTCATCTTGCTTCACTACAACTTCAAGGAGATAAGATTCACTATTGTAGTTTCATTCCAACCCAC
* *
71264288 TGTAACTTCAGGGGTATAGGATTTATAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* * * *
71264317 TTCATCTTGCTTCA-TGCAACTTCAGGGAGATAAGATTCACCATTATAGTTTCATTCCAACCCAC
1 TTCATCTTGCTTCACTACAACTTCAAGGAGATAAGATTCACTATTGTAGTTTCATTCCAACCCAC
* * *
71264381 TGTAACTTCAAGGATATAGGATTTGTAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* * ***
71264410 TTCATCTTGCTTCACTGA-AACTTCAAGGAGATAAGATTCGCTATGGTAGCTTT-ATTTTGACCC
1 TTCATCTTGCTTCACT-ACAACTTCAAGGAGATAAGATTCACTATTGTAG-TTTCATTCCAACCC
*
71264473 ACTGCAACTTTAGGGG
64 ACTGCAACTTCAGGGG
71264489 GACTTGAATT
Statistics
Matches: 460, Mismatches: 81, Indels: 14
0.83 0.15 0.03
Matches are distributed among these distances:
93 86 0.19
94 368 0.80
95 6 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (94 bp):
TTCATCTTGCTTCACTACAACTTCAAGGAGATAAGATTCACTATTGTAGTTTCATTCCAACCCAC
TGCAACTTCAGGGGTATAGGATTTGTAGC
Found at i:71264050 original size:44 final size:44
Alignment explanation
Indices: 71264002--71264151 Score: 124
Period size: 44 Copynumber: 3.3 Consensus size: 44
71263992 TCATTCCAAC
*
71264002 CCACTGTAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
* * * * * *
71264046 CCACTACAAC-TTCGGGGAGATAAGATTTGCTATGGTAGCTTCATTTTAAC-
1 CCACTGCAACTTTAGGGG-TATAGGA--T--T-T-GTAGCTTCATCTT-GCT
*
71264096 CCGCTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
* *
71264140 CTACTTCAACTT
1 CCACTGCAACTT
71264152 CAAGGAGATA
Statistics
Matches: 79, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
43 7 0.09
44 34 0.43
45 1 0.01
46 2 0.03
48 2 0.03
49 1 0.01
50 25 0.32
51 7 0.09
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (44 bp):
CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCT
Found at i:71277755 original size:93 final size:93
Alignment explanation
Indices: 71277642--71277814 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
71277632 AGCCCATAAG
* ***
71277642 CGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTC-AGACTCAACTC
1 CGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGA-ACTCAACTC
*
71277706 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
71277735 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
71277800 ATGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
71277815 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:71277810 original size:46 final size:46
Alignment explanation
Indices: 71277635--71277810 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
71277625 TGTAACCAGC
***
71277635 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
71277681 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
71277731 -C-TCA-CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
71277774 CCATAAGTGAACTC-GAACTCAACTCAATGAGCTCGGA
1 CCATAAGCGAACTCAG-ACTCAACTCAACGAGCTCGGA
71277811 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 59 0.57
47 26 0.25
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:71279091 original size:62 final size:62
Alignment explanation
Indices: 71278994--71279118 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
71278984 TAGACCTCAA
* *
71278994 AATAATCATAAAATAATTATTTTTATCTCAGATTTTGTGGTCCCGAAACCACTATTCCGATT
1 AATAATCATAAAATAATTATTTTTATCTCAAATTTTGTGGTCCCAAAACCACTATTCCGATT
71279056 AATAATCATAAAATAATTATTTTTATCTCAAATTTTGTGGTCCCAAAACCACTATTCCGATT
1 AATAATCATAAAATAATTATTTTTATCTCAAATTTTGTGGTCCCAAAACCACTATTCCGATT
71279118 A
1 A
71279119 GGCCCTAATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (62 bp):
AATAATCATAAAATAATTATTTTTATCTCAAATTTTGTGGTCCCAAAACCACTATTCCGATT
Found at i:71287377 original size:46 final size:46
Alignment explanation
Indices: 71287310--71287487 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
71287300 TGTAACCAGC
* *
71287310 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGTTCGCAT
* * * * *
71287356 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATG-TTCG-CAT
* * * * **
71287404 ATC-TCA-CGAACTCGAACTCAGCTCAACGAGCTCGGACATTCGCAT
1 -CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGTTCGCAT
*
71287449 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATG
71287488 CCCAAATATC
Statistics
Matches: 102, Mismatches: 25, Indels: 10
0.74 0.18 0.07
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
46 64 0.63
47 28 0.27
48 4 0.04
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:71287429 original size:93 final size:93
Alignment explanation
Indices: 71287318--71287489 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
71287308 GCCCATAAGT
***
71287318 GAACTCAAACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71287383 CGAGTTCGGATGCCTAGTTATATCTCAC
66 CGAGCTCGGATGCCTAGTTATATCTCAC
* *
71287411 GAACTCGAACTCAGCTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71287476 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
71287490 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCAC
Found at i:71291238 original size:37 final size:37
Alignment explanation
Indices: 71291188--71291258 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
71291178 CTAAGAATTC
*
71291188 ATAATGGTCGTACCTTGTTCAAAAAGTAGTTTTATTT
1 ATAATGGCCGTACCTTGTTCAAAAAGTAGTTTTATTT
71291225 ATAATGGCCGTACCTTGTTCAAAAAGTAGTTTTA
1 ATAATGGCCGTACCTTGTTCAAAAAGTAGTTTTA
71291259 GGCACATCTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (37 bp):
ATAATGGCCGTACCTTGTTCAAAAAGTAGTTTTATTT
Found at i:71294976 original size:46 final size:46
Alignment explanation
Indices: 71294909--71295084 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
71294899 TGTAACCCGA
* * *
71294909 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
71294955 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTC-G--GAC-A-TTCGCAT
* *
71295005 -C-TCA-CGAACTCAGACTCAACTCAACGAGCTTGGACATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71295048 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGA
71295085 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 59 0.56
47 25 0.24
48 2 0.02
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:71295025 original size:93 final size:93
Alignment explanation
Indices: 71294916--71295088 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
71294906 CGACCATAAG
* * *
71294916 CGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
71294981 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
*
71295009 CGAACTCAGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
71295074 ACGAGCTCGGATGCC
66 ACGAGCTCAGATGCC
71295089 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:71295884 original size:56 final size:56
Alignment explanation
Indices: 71295778--71295884 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 56
71295768 ACATATCATC
* *
71295778 CATGGGTAAAATTTTAAATATAAACTCTAGCTCAAAATATTTTTGTACATACAATT
1 CATGGGTAAAATTTTAAATATAAACTCTAGCTCAAAATATTGTAGTACATACAATT
71295834 CATGGGTAAAATTTTAAATATAAACTCTAGCTCAAAATATTGGTAG-ACATA
1 CATGGGTAAAATTTTAAATATAAACTCTAGCTCAAAATATT-GTAGTACATA
71295885 GGTAAACCGA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
56 46 0.96
57 2 0.04
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (56 bp):
CATGGGTAAAATTTTAAATATAAACTCTAGCTCAAAATATTGTAGTACATACAATT
Found at i:71296111 original size:59 final size:59
Alignment explanation
Indices: 71296019--71296195 Score: 345
Period size: 59 Copynumber: 3.0 Consensus size: 59
71296009 AACTTATGGA
71296019 GAAGATGATCATTTTTGTGTTATTTTTCCCATTTTATTTCATTTAATATCCAAATGACC
1 GAAGATGATCATTTTTGTGTTATTTTTCCCATTTTATTTCATTTAATATCCAAATGACC
71296078 GAAGATGATCATTTTTGTGTTATTTTTCCCATTTTATTTCATTTAATATCCAAATGACC
1 GAAGATGATCATTTTTGTGTTATTTTTCCCATTTTATTTCATTTAATATCCAAATGACC
*
71296137 GAAGATGATCATTTTTGTGTTATTTTTCCCATTTTATTTTATTTAATATCCAAATGACC
1 GAAGATGATCATTTTTGTGTTATTTTTCCCATTTTATTTCATTTAATATCCAAATGACC
71296196 AAAATGCCAT
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 117 1.00
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (59 bp):
GAAGATGATCATTTTTGTGTTATTTTTCCCATTTTATTTCATTTAATATCCAAATGACC
Found at i:71299109 original size:20 final size:20
Alignment explanation
Indices: 71299071--71299118 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
71299061 TAAATTCTAA
**
71299071 AAAGATAAATACATTTAATT
1 AAAGATAAATACAGATAATT
*
71299091 AAAGATAAATAGAGATAATT
1 AAAGATAAATACAGATAATT
71299111 AAA-ATAAA
1 AAAGATAAA
71299119 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (20 bp):
AAAGATAAATACAGATAATT
Found at i:71299129 original size:19 final size:18
Alignment explanation
Indices: 71299105--71299148 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
71299095 ATAAATAGAG
71299105 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
71299125 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
71299142 ATAATTA
1 ATAATTA
71299149 TCCTAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:71299164 original size:15 final size:15
Alignment explanation
Indices: 71299144--71299176 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
71299134 TAATCCTAAT
71299144 AATTATCCTAATATA
1 AATTATCCTAATATA
71299159 AATTATCCTAATATA
1 AATTATCCTAATATA
71299174 AAT
1 AAT
71299177 AAAATGGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTATCCTAATATA
Found at i:71302997 original size:70 final size:70
Alignment explanation
Indices: 71302884--71303020 Score: 265
Period size: 70 Copynumber: 2.0 Consensus size: 70
71302874 GAGGTAAATA
*
71302884 AAACAACCATTCCCTAGTTGAATCTGCTAGGGAAAAAGGGAAAGCGTGCAATTTAATTTGATCCT
1 AAACAACCATTCCCTAGTTGAATCTGCTAGGGAAAAAGGGAAAGCGCGCAATTTAATTTGATCCT
71302949 CAGTT
66 CAGTT
71302954 AAACAACCATTCCCTAGTTGAATCTGCTAGGGAAAAAGGGAAAGCGCGCAATTTAATTTGATCCT
1 AAACAACCATTCCCTAGTTGAATCTGCTAGGGAAAAAGGGAAAGCGCGCAATTTAATTTGATCCT
71303019 CA
66 CA
71303021 ATTACCCCCT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (70 bp):
AAACAACCATTCCCTAGTTGAATCTGCTAGGGAAAAAGGGAAAGCGCGCAATTTAATTTGATCCT
CAGTT
Found at i:71304531 original size:20 final size:20
Alignment explanation
Indices: 71304493--71304540 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
71304483 TAAATTCTAA
**
71304493 AAAGATAAATACATTTAATT
1 AAAGATAAATACAGATAATT
*
71304513 AAAGATAAATAGAGATAATT
1 AAAGATAAATACAGATAATT
71304533 AAA-ATAAA
1 AAAGATAAA
71304541 ATCCTAAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (20 bp):
AAAGATAAATACAGATAATT
Found at i:71304586 original size:15 final size:15
Alignment explanation
Indices: 71304566--71304598 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
71304556 TAATCCTAAT
71304566 AATTATCCTAATATA
1 AATTATCCTAATATA
71304581 AATTATCCTAATATA
1 AATTATCCTAATATA
71304596 AAT
1 AAT
71304599 AAAATGGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTATCCTAATATA
Found at i:71309957 original size:5 final size:5
Alignment explanation
Indices: 71309947--71309971 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
71309937 TATTGGGGTT
71309947 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
71309972 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:71310039 original size:46 final size:48
Alignment explanation
Indices: 71309967--71310069 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
71309957 GACAGGACAG
* * * *
71309967 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
71310013 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
71310061 GACAGGAAT
1 GACAGGAAT
71310070 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:71314781 original size:27 final size:27
Alignment explanation
Indices: 71314750--71314927 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71314740 TAAATTGTAC
71314750 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71314777 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71314803 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71314831 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71314859 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71314886 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71314913 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71314928 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71314864 original size:82 final size:81
Alignment explanation
Indices: 71314751--71314906 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71314741 AAATTGTACA
* *
71314751 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71314815 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71314832 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71314897 TGCGAGTTGA
65 TGCGAATTGA
71314907 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71314918 original size:82 final size:81
Alignment explanation
Indices: 71314747--71314927 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71314737 GATTAAATTG
* *
71314747 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71314812 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71314828 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71314892 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71314910 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71314928 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71320665 original size:7 final size:7
Alignment explanation
Indices: 71320655--71320701 Score: 60
Period size: 7 Copynumber: 6.6 Consensus size: 7
71320645 ATAAAAAATA
71320655 TTTTATT
1 TTTTATT
71320662 TTTTATTT
1 TTTTA-TT
71320670 TTTTATTT
1 TTTTA-TT
71320678 TTTTATT
1 TTTTATT
71320685 TTTTA-T
1 TTTTATT
*
71320691 TATTATT
1 TTTTATT
71320698 TTTT
1 TTTT
71320702 TACTAGGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 5 0.14
7 16 0.44
8 15 0.42
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:71320673 original size:8 final size:8
Alignment explanation
Indices: 71320655--71320688 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
71320645 ATAAAAAATA
71320655 TTTTA-TT
1 TTTTATTT
71320662 TTTTATTT
1 TTTTATTT
71320670 TTTTATTT
1 TTTTATTT
71320678 TTTTATTT
1 TTTTATTT
71320686 TTT
1 TTT
71320689 ATTATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.19
8 21 0.81
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTATTT
Found at i:71320675 original size:15 final size:15
Alignment explanation
Indices: 71320655--71320703 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
71320645 ATAAAAAATA
71320655 TTTTATTTTTTATTT
1 TTTTATTTTTTATTT
71320670 TTTTATTTTTT-TATT
1 TTTTATTTTTTAT-TT
*
71320685 TTTTA-TTATTATTT
1 TTTTATTTTTTATTT
71320699 TTTTA
1 TTTTA
71320704 CTAGGATTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTATTTTTTATTT
Found at i:71327183 original size:91 final size:91
Alignment explanation
Indices: 71327028--71327210 Score: 357
Period size: 91 Copynumber: 2.0 Consensus size: 91
71327018 TGAGAAACAG
*
71327028 AAAGATAAATATGGTGAAACTACCTAAATTACCTTACTAAAGTAAACATTCAACAATAAAATTAC
1 AAAGATAAATATGGAGAAACTACCTAAATTACCTTACTAAAGTAAACATTCAACAATAAAATTAC
71327093 AGTATTTTCCATCAAAATAATGAAAA
66 AGTATTTTCCATCAAAATAATGAAAA
71327119 AAAGATAAATATGGAGAAACTACCTAAATTACCTTACTAAAGTAAACATTCAACAATAAAATTAC
1 AAAGATAAATATGGAGAAACTACCTAAATTACCTTACTAAAGTAAACATTCAACAATAAAATTAC
71327184 AGTATTTTCCATCAAAATAATGAAAA
66 AGTATTTTCCATCAAAATAATGAAAA
71327210 A
1 A
71327211 GATAACCCCT
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (91 bp):
AAAGATAAATATGGAGAAACTACCTAAATTACCTTACTAAAGTAAACATTCAACAATAAAATTAC
AGTATTTTCCATCAAAATAATGAAAA
Found at i:71328169 original size:29 final size:29
Alignment explanation
Indices: 71328111--71328181 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 29
71328101 TTTCTGTCAT
* * *
71328111 TATTTTATAAAAAATCGTATTAAAAAATA
1 TATTTTAAAAAAAATCATAATAAAAAATA
*
71328140 TATTTTAAAAAAAATCATAATACAATATATA
1 TATTTTAAAAAAAATCATAATA-AA-AAATA
71328171 TATATTTAAAA
1 TAT-TTTAAAA
71328182 TTGGTAATTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 19 0.54
30 2 0.06
31 7 0.20
32 7 0.20
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.38
Consensus pattern (29 bp):
TATTTTAAAAAAAATCATAATAAAAAATA
Found at i:71331423 original size:34 final size:34
Alignment explanation
Indices: 71331358--71331424 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
71331348 AAGCATGCCT
* * * **
71331358 TTTGCTACTGAATCAATCTATTATAGGCATAATA
1 TTTGCCACCGAATCAAACTATTATAAACATAATA
*
71331392 TTTGCCACCGAATCAAACTTTTATAAACATAAT
1 TTTGCCACCGAATCAAACTATTATAAACATAAT
71331425 GGTTCTATTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (34 bp):
TTTGCCACCGAATCAAACTATTATAAACATAATA
Found at i:71331781 original size:15 final size:15
Alignment explanation
Indices: 71331761--71331790 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
71331751 TTAATTAAGT
71331761 TCTCAAAAGTAGTCA
1 TCTCAAAAGTAGTCA
71331776 TCTCAAAAGTAGTCA
1 TCTCAAAAGTAGTCA
71331791 CCATTATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (15 bp):
TCTCAAAAGTAGTCA
Found at i:71346383 original size:17 final size:17
Alignment explanation
Indices: 71346361--71346395 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
71346351 ATTTCAATAC
71346361 ATGGATTCAATTAACTG
1 ATGGATTCAATTAACTG
71346378 ATGGATTCAATTAACTG
1 ATGGATTCAATTAACTG
71346395 A
1 A
71346396 CTTTATCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34
Consensus pattern (17 bp):
ATGGATTCAATTAACTG
Found at i:71353630 original size:23 final size:23
Alignment explanation
Indices: 71353600--71353645 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
71353590 GAGGGTAATT
71353600 CTAGGCCTTTGACAAATTTGTCA
1 CTAGGCCTTTGACAAATTTGTCA
*
71353623 CTAGGCCTTTGGCAAATTTGTCA
1 CTAGGCCTTTGACAAATTTGTCA
71353646 GACTCTATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (23 bp):
CTAGGCCTTTGACAAATTTGTCA
Found at i:71361793 original size:152 final size:152
Alignment explanation
Indices: 71361512--71361817 Score: 533
Period size: 152 Copynumber: 2.0 Consensus size: 152
71361502 ATGCCACTGG
71361512 CCCTATTCTTTCAATAATCTCATACGACTAATGAACTGCGAACTCAACTTACCTTTGCGGCCAAA
1 CCCTATTCTTTCAATAATCTCATACGACTAATGAACTGCGAACTCAACTTACCTTTGCGGCCAAA
* * *
71361577 TCTAAGTATTTTTCTTCCATGGTGATTTCTGTCGATCCGAAGCTGCTTTTAAACAATCACGAATT
66 TCTAAGTATTTTTCTTCAATGGTGATTTCTATCGATCCGAAGCTGCTTTCAAACAATCACGAATT
71361642 ACTTTCACCATTTCTTTGAAAT
131 ACTTTCACCATTTCTTTGAAAT
*
71361664 CCCTATTCTTTCAATAATCTCATACGACCTAATGAACTGCGGACTCAACTTACCTTTGCGGCCAA
1 CCCTATTCTTTCAATAATCTCATACGA-CTAATGAACTGCGAACTCAACTTACCTTTGCGGCCAA
* *
71361729 ATCTAAGTA-TTTTCTTTAATGGTGATTTCTATCGATCCGAAGCTGCTTTCAAACAATCATGAAT
65 ATCTAAGTATTTTTCTTCAATGGTGATTTCTATCGATCCGAAGCTGCTTTCAAACAATCACGAAT
*
71361793 TACTTTCACCTTTTCTTTGAAAT
130 TACTTTCACCATTTCTTTGAAAT
71361816 CC
1 CC
71361818 ATGCCCAATT
Statistics
Matches: 146, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
152 101 0.69
153 45 0.31
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (152 bp):
CCCTATTCTTTCAATAATCTCATACGACTAATGAACTGCGAACTCAACTTACCTTTGCGGCCAAA
TCTAAGTATTTTTCTTCAATGGTGATTTCTATCGATCCGAAGCTGCTTTCAAACAATCACGAATT
ACTTTCACCATTTCTTTGAAAT
Found at i:71369959 original size:130 final size:130
Alignment explanation
Indices: 71369725--71369985 Score: 441
Period size: 130 Copynumber: 2.0 Consensus size: 130
71369715 GGTAGCCTAG
* *
71369725 AATGAAGAAGGAGATATCAAAATATGTTTCGAGTTGTTTGACATGCCAATGAGTGAAGGCAGAGC
1 AATGAAGAAGGAGATATCAAAATATGTTTCGAGCTGTTTGACATGCCAATGAGTGAAGGCAAAGC
* * **
71369790 ATCAAGTTCCCTCAGGGAAGCTATATCCTTTAAAGACTCCAAAGTGGAAGTAGGACAAGATAACC
66 ATCAAGTTCCCTCAGGAAAGCTATATCCTTTAAAAACTCCAAAGCAGAAGTAGGACAAGATAACC
* *
71369855 AATGAAGAAGGAGATATCAAAATATGTTTTGAGCTGTTTGACATGCCAGTGAGTGAAGGCAAAGC
1 AATGAAGAAGGAGATATCAAAATATGTTTCGAGCTGTTTGACATGCCAATGAGTGAAGGCAAAGC
*
71369920 ATCAAGTTCCCTCAGGAAAGCTATATCCTTTAAAAACTCCAAAGCAGAAGTAGGACAAGATCACC
66 ATCAAGTTCCCTCAGGAAAGCTATATCCTTTAAAAACTCCAAAGCAGAAGTAGGACAAGATAACC
71369985 A
1 A
71369986 TTGACTTTAT
Statistics
Matches: 122, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 122 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (130 bp):
AATGAAGAAGGAGATATCAAAATATGTTTCGAGCTGTTTGACATGCCAATGAGTGAAGGCAAAGC
ATCAAGTTCCCTCAGGAAAGCTATATCCTTTAAAAACTCCAAAGCAGAAGTAGGACAAGATAACC
Found at i:71375947 original size:47 final size:43
Alignment explanation
Indices: 71375873--71376034 Score: 132
Period size: 46 Copynumber: 3.5 Consensus size: 43
71375863 TCACTTGTGT
* *
71375873 GAGCTACTGTAATACATGTCTGTGACATGCATCAGCCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTCTG-GACATGCATC-G--ACATTGA-GAC
71375919 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCT-GGACAT-GCATCGACATTGAGAC
* *
71375965 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-TATGAGAT
1 GA--GCTAGTGTAAGACATGTCT-GGACATGCATCGACAT-TGAGAC
* *
71376011 GTGTTAGTGTAAGACTATGTCTGG
1 GAGCTAGTGTAAGAC-ATGTCTGG
71376035 GATATGGAAT
Statistics
Matches: 100, Mismatches: 7, Indels: 20
0.79 0.06 0.16
Matches are distributed among these distances:
44 14 0.14
45 14 0.14
46 28 0.28
47 26 0.26
48 18 0.18
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (43 bp):
GAGCTAGTGTAAGACATGTCTGGACATGCATCGACATTGAGAC
Found at i:71382989 original size:29 final size:30
Alignment explanation
Indices: 71382956--71383012 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
71382946 AAATCAATTT
* *
71382956 TCAAA-CCTAGGGGTAAAATGGTTATTTGG
1 TCAAAGCCTAGGGGCAAAATGGTCATTTGG
*
71382985 TCAAAGTCTAGGGGCAAAATGGTCATTT
1 TCAAAGCCTAGGGGCAAAATGGTCATTT
71383013 CACCAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (30 bp):
TCAAAGCCTAGGGGCAAAATGGTCATTTGG
Found at i:71383498 original size:46 final size:47
Alignment explanation
Indices: 71383391--71383507 Score: 123
Period size: 46 Copynumber: 2.5 Consensus size: 47
71383381 CAGCCACATT
* *
71383391 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAG
1 ATGAGAGCCAGTGTAA-AACATGTCTAGGACATGGCATCGACATTAAG
* * * *
71383439 ATGAGTGCTAGTGTAAAACATGTCT-GGAACAT-GCTTCGACCTTAAG
1 ATGAGAGCCAGTGTAAAACATGTCTAGG-ACATGGCATCGACATTAAG
*
71383485 ATGTA-AGCCAGTGTAAGACATGT
1 ATG-AGAGCCAGTGTAAAACATGT
71383508 TTGTGACATG
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
46 31 0.53
47 13 0.22
48 14 0.24
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (47 bp):
ATGAGAGCCAGTGTAAAACATGTCTAGGACATGGCATCGACATTAAG
Found at i:71383517 original size:46 final size:45
Alignment explanation
Indices: 71383349--71383517 Score: 121
Period size: 46 Copynumber: 3.6 Consensus size: 45
71383339 TCACTTGTGT
* * *
71383349 GAGCTAGTGTAGGACATGTCTGGGACATGCATCAGCCACATT---ATGA
1 GAGCCAGTGTAAGACATGT-TTGGACATGCATC-G--ACATTAAGATGA
* *
71383395 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGATGA
1 GAGCCAGTGTAAGA-CATGT-TTGGACAT-GCATCGACATTAAGATGA
* * * * * *
71383443 GTGCTAGTGTAAAACATGTCTGGAACATGCTTCGACCTTAAGATGTA
1 GAGCCAGTGTAAGACATGTTTGG-ACATGCATCGACATTAAGATG-A
71383490 -AGCCAGTGTAAGACATGTTTGTGACATG
1 GAGCCAGTGTAAGACATGTTTG-GACATG
71383518 TATAGGCTAT
Statistics
Matches: 100, Mismatches: 15, Indels: 16
0.76 0.11 0.12
Matches are distributed among these distances:
45 5 0.05
46 50 0.50
47 25 0.25
48 20 0.20
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTTTGGACATGCATCGACATTAAGATGA
Found at i:71384410 original size:20 final size:18
Alignment explanation
Indices: 71384369--71384405 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
71384359 TGTGACGCAC
71384369 GGTCTACCCTATGGGCGT
1 GGTCTACCCTATGGGCGT
71384387 GGTCTACCCTATGGGCGT
1 GGTCTACCCTATGGGCGT
71384405 G
1 G
71384406 TGGTCCGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.27, G:0.35, T:0.27
Consensus pattern (18 bp):
GGTCTACCCTATGGGCGT
Found at i:71388481 original size:23 final size:23
Alignment explanation
Indices: 71388433--71388482 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
71388423 ATTTAAGTTA
* * *
71388433 TAAAATTTATTTGGTATATTACT
1 TAAAATTAATTTGGAATATTAAT
71388456 TAAAATTAATTATGGAATA-TAAT
1 TAAAATTAATT-TGGAATATTAAT
71388479 TAAA
1 TAAA
71388483 TCATTTATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (23 bp):
TAAAATTAATTTGGAATATTAAT
Found at i:71393709 original size:18 final size:18
Alignment explanation
Indices: 71393686--71393721 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
71393676 CAAGTTAAAC
71393686 TAATCGAGTTATTCGAGT
1 TAATCGAGTTATTCGAGT
*
71393704 TAATCGAGTTATTTGAGT
1 TAATCGAGTTATTCGAGT
71393722 CAACTCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (18 bp):
TAATCGAGTTATTCGAGT
Found at i:71393890 original size:30 final size:31
Alignment explanation
Indices: 71393855--71393937 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 31
71393845 CAAATCTTTT
*
71393855 TACTTTTCCCTCAAAACTTTTACTCCTTCC-C
1 TACTTTTCCCTCAAAACTTTTACT-CTCCCGC
*
71393886 -AC-TTTCCCTCCAAACTTTTACTCTCCCGTC
1 TACTTTTCCCTCAAAACTTTTACTCTCCCG-C
71393916 TACTTTT-CCTCAAAA-TTTTACT
1 TACTTTTCCCTCAAAACTTTTACT
71393938 TCCAAAAATC
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
28 4 0.09
29 19 0.42
30 10 0.22
31 9 0.20
32 3 0.07
ACGTcount: A:0.20, C:0.36, G:0.01, T:0.42
Consensus pattern (31 bp):
TACTTTTCCCTCAAAACTTTTACTCTCCCGC
Found at i:71394039 original size:18 final size:17
Alignment explanation
Indices: 71394016--71394076 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
71394006 CTCCCCCTTA
71394016 TTTACTTTCCCTCAAACT
1 TTTACTTTCCC-CAAACT
* *
71394034 TTTAC-TTCCCAAAATTT
1 TTTACTTTCCCCAAA-CT
*
71394051 TTTATTTTCCCCCAAAACT
1 TTTACTTT-CCCC-AAACT
71394070 TTTACTT
1 TTTACTT
71394077 CTCACCCTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 3 0.09
17 10 0.30
18 7 0.21
19 10 0.30
20 3 0.09
ACGTcount: A:0.25, C:0.28, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTACTTTCCCCAAACT
Found at i:71400225 original size:8 final size:8
Alignment explanation
Indices: 71400212--71400241 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
71400202 CTTCAAAAGT
71400212 AATTAAAA
1 AATTAAAA
71400220 AATTAAAA
1 AATTAAAA
71400228 AATTAAAA
1 AATTAAAA
71400236 AATTAA
1 AATTAA
71400242 TATTTTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
AATTAAAA
Found at i:71400298 original size:25 final size:24
Alignment explanation
Indices: 71400270--71400321 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
71400260 TAAAAATTAA
*
71400270 AAAAAATATTATTTTTTTAAAAAAT
1 AAAAAATA-TAATTTTTTAAAAAAT
*
71400295 AAAAATTATAATTTTTTAAAAAAT
1 AAAAAATATAATTTTTTAAAAAAT
71400319 AAA
1 AAA
71400322 GATATGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
AAAAAATATAATTTTTTAAAAAAT
Found at i:71400367 original size:11 final size:11
Alignment explanation
Indices: 71400353--71400378 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
71400343 TTTAAAATTA
71400353 AAAATATAAAT
1 AAAATATAAAT
71400364 AAAATATAAAT
1 AAAATATAAAT
71400375 AAAA
1 AAAA
71400379 ATTTCAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATATAAAT
Found at i:71401559 original size:7 final size:7
Alignment explanation
Indices: 71401547--71401571 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
71401537 GTATAGATAC
71401547 TAAATTT
1 TAAATTT
71401554 TAAATTT
1 TAAATTT
71401561 TAAATTT
1 TAAATTT
71401568 TAAA
1 TAAA
71401572 AGAGTACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:71421806 original size:40 final size:40
Alignment explanation
Indices: 71421574--71421799 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
71421564 TTGAATGATG
* * * * *
71421574 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
71421614 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71421654 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71421694 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71421734 TCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71421775 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71421800 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71424313 original size:22 final size:21
Alignment explanation
Indices: 71424287--71424342 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
71424277 ATATCAAAAC
71424287 AATAACAACAAAAT-AGTAGCA
1 AATAACAACAAAATGA-TAGCA
* *
71424308 ATATAATAGCAAAATGATAGCA
1 A-ATAACAACAAAATGATAGCA
*
71424330 AAAAACAACAAAA
1 AATAACAACAAAA
71424343 CAACAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 10 0.36
22 17 0.61
23 1 0.04
ACGTcount: A:0.64, C:0.12, G:0.09, T:0.14
Consensus pattern (21 bp):
AATAACAACAAAATGATAGCA
Found at i:71429553 original size:16 final size:16
Alignment explanation
Indices: 71429532--71429565 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
71429522 CTATGCATGC
* *
71429532 AAAATATAAAAGATAT
1 AAAATAAAAAAGACAT
71429548 AAAATAAAAAAGACAT
1 AAAATAAAAAAGACAT
71429564 AA
1 AA
71429566 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (16 bp):
AAAATAAAAAAGACAT
Found at i:71439201 original size:23 final size:23
Alignment explanation
Indices: 71439173--71439218 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
71439163 TAAATATCTC
71439173 AAGATTTAATTTCACATCTCATT
1 AAGATTTAATTTCACATCTCATT
71439196 AAGATTTAATTTCACATCTCATT
1 AAGATTTAATTTCACATCTCATT
71439219 CAACCTCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.43
Consensus pattern (23 bp):
AAGATTTAATTTCACATCTCATT
Found at i:71439714 original size:68 final size:70
Alignment explanation
Indices: 71439565--71439722 Score: 164
Period size: 68 Copynumber: 2.3 Consensus size: 70
71439555 TTAGCCGATT
* * * *
71439565 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
*
71439630 TTTATC
65 TATATC
* * * *
71439636 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTAC-
1 TATCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTACA
71439697 TATATAC
65 TATAT-C
71439704 TATCTCGTAGC-CTTCTTGT
1 TATCTCGTAGCTC-TCTTGT
71439723 ACACATGATG
Statistics
Matches: 73, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
67 5 0.07
68 37 0.51
70 2 0.03
71 29 0.40
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (70 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAT
ATATC
Found at i:71446406 original size:68 final size:68
Alignment explanation
Indices: 71446231--71446388 Score: 298
Period size: 68 Copynumber: 2.3 Consensus size: 68
71446221 TTCAATTGGA
* *
71446231 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAGGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAGGGGATACATCC
71446296 CGT
66 CGT
71446299 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAGGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAGGGGATACATCC
71446364 CGT
66 CGT
71446367 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
71446389 TATATACTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAGGGGATACATCC
CGT
Found at i:71448781 original size:68 final size:65
Alignment explanation
Indices: 71448567--71448819 Score: 212
Period size: 68 Copynumber: 3.8 Consensus size: 65
71448557 CATAATTTTG
** * * * *
71448567 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCTA-GTTTA-TCTCGT
1 GCTCTCTTGT-CTACATGGTGTGCACATAGTACCACCCATGCGACCTAGCTACATATATTCTCGT
71448629 A
65 A
* * * * * * *
71448630 GCTCTCTTGTCTACACGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATA-TCCC
1 GCTCTCTTGTCTACATGGTG---TGCACATAGTACCACCCATGCGACCTAGCTACATATATTCTC
71448694 GTA
63 GTA
*
71448697 GCTCTCTTGTCTACATGGTGTGCACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTGCACATAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
71448762 GTA
63 GTA
* * ** *
71448765 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTGCACAT-AGTACCACCCATGCGACCTAGCTACATA
71448820 CCATCTGTAT
Statistics
Matches: 154, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.11
64 28 0.18
65 2 0.01
66 25 0.16
67 30 0.19
68 50 0.32
69 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTGCACATAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Done.