Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 216 of 276
Found at i:71809994 original size:49 final size:52
Alignment explanation
Indices: 71809938--71810046 Score: 161
Period size: 49 Copynumber: 2.2 Consensus size: 52
71809928 TAAGTATGTT
* *
71809938 CATAAGTTAGCAAATTACCGGGTTGCTGTGATTTTATTC-T-A-AATATAAA
1 CATAAGTTACCAAATTACCGGGTTGCCGTGATTTTATTCGTAACAATATAAA
* *
71809987 CATAAGTTTCCAAATTACTGGGTTGCCGTGATTTTATTCGTAACAATATAAA
1 CATAAGTTACCAAATTACCGGGTTGCCGTGATTTTATTCGTAACAATATAAA
71810039 CATAAGTT
1 CATAAGTT
71810047 TAATAATTCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
49 35 0.66
50 1 0.02
51 1 0.02
52 16 0.30
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37
Consensus pattern (52 bp):
CATAAGTTACCAAATTACCGGGTTGCCGTGATTTTATTCGTAACAATATAAA
Found at i:71815964 original size:40 final size:40
Alignment explanation
Indices: 71815877--71816097 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
71815867 TATTCGGATG
* *
71815877 ATATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
71815916 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
71815956 ATACCCGGGCTAAGTACCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
71815996 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
71816036 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
* *
71816076 ATAT-CTGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
71816098 TACTTGGGTT
Statistics
Matches: 159, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 43 0.27
40 111 0.70
41 5 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:71824095 original size:40 final size:40
Alignment explanation
Indices: 71824008--71824228 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
71823998 TATTCGGATG
* * *
71824008 ATATCCGGGCTAAGTCACGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
71824047 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* *
71824087 ATACCCGGGCTAAGTCCCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
* * ** *
71824127 ATATCCGAGCTAAGTCTCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
71824167 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
71824207 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
71824229 TACTTGGGTT
Statistics
Matches: 157, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
39 41 0.26
40 111 0.71
41 5 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:71824148 original size:80 final size:78
Alignment explanation
Indices: 71824012--71824228 Score: 283
Period size: 80 Copynumber: 2.7 Consensus size: 78
71824002 CGGATGATAT
* * * *
71824012 CCGGGCTAAGTCACGAAGGCATGGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGGCAGTTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCC-GGCTAAGTCCCGAAGGCAGTTG
*
71824076 TGCTATTGACTATAC
64 TGCTAGTGACTATAC
* **
71824091 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGAGCTAAGTCTCGAAGGCTTTTG
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCG-GCTAAGTCCCGAAGGCAGTTG
*
71824156 TGCTAGTGACTATAT
64 TGCTAGTGACTATAC
* *
71824171 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGCTAAGTCCCGAAGG
71824229 TACTTGGGTT
Statistics
Matches: 122, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 33 0.27
80 87 0.71
81 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCCGGCTAAGTCCCGAAGGCAGTTGTG
CTAGTGACTATAC
Found at i:71827361 original size:13 final size:13
Alignment explanation
Indices: 71827343--71827367 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71827333 GATAAGACTG
71827343 AACAGAATCAAAC
1 AACAGAATCAAAC
71827356 AACAGAATCAAA
1 AACAGAATCAAA
71827368 TTTCGTTCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.20, G:0.08, T:0.08
Consensus pattern (13 bp):
AACAGAATCAAAC
Found at i:71827846 original size:25 final size:24
Alignment explanation
Indices: 71827787--71827846 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 24
71827777 AAAAGATAAT
71827787 AATTATTA-ATATATAATTATATC
1 AATTATTATATATATAATTATATC
* *
71827810 CATTATAATATATATTAATTATTATC
1 AATTATTATATATA-TAATTA-TATC
71827836 AACTTATTATA
1 AA-TTATTATA
71827847 GAGTTAGGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 6 0.21
24 5 0.17
25 6 0.21
26 5 0.17
27 7 0.24
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (24 bp):
AATTATTATATATATAATTATATC
Found at i:71828035 original size:17 final size:18
Alignment explanation
Indices: 71828013--71828046 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
71828003 TTTTTGTTTA
71828013 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
71828030 AATAAATTAATATGCAT
1 AATAAATTAATATGCAT
71828047 ATATTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:71837885 original size:3 final size:3
Alignment explanation
Indices: 71837877--71837915 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
71837867 CACACTGAGC
*
71837877 TTA TTA TTA TTA TTA TTA TTA TT- TAA TTAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
71837916 AGTCTTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 1 0.03
3 28 0.88
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:71841522 original size:29 final size:29
Alignment explanation
Indices: 71841461--71841550 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
71841451 CACATACCTG
*
71841461 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
71841489 AATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
71841518 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
71841547 TATA
1 TATA
71841551 GTCACGCTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 17 0.30
29 39 0.70
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:71866697 original size:29 final size:29
Alignment explanation
Indices: 71866672--71866726 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
71866662 AAATTTTCTA
*
71866672 TAAATTTTTT-T-ATTTTTTAGATTTTTC
1 TAAATTTTTTCTAATTTTATAGATTTTTC
*
71866699 TAAATTTTTTCTAATTTTATGGATTTTT
1 TAAATTTTTTCTAATTTTATAGATTTTT
71866727 GTGTTTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 10 0.42
28 1 0.04
29 13 0.54
ACGTcount: A:0.24, C:0.04, G:0.05, T:0.67
Consensus pattern (29 bp):
TAAATTTTTTCTAATTTTATAGATTTTTC
Found at i:71866716 original size:27 final size:28
Alignment explanation
Indices: 71866672--71866726 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
71866662 AAATTTTCTA
*
71866672 TAAATTTTTTTATTTTTTA-GATTTTTC
1 TAAATTTTTTTATATTTTAGGATTTTTC
71866699 TAAATTTTTTCTA-ATTTTATGGATTTTT
1 TAAATTTTTT-TATATTTTA-GGATTTTT
71866727 GTGTTTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 15 0.62
28 2 0.08
29 7 0.29
ACGTcount: A:0.24, C:0.04, G:0.05, T:0.67
Consensus pattern (28 bp):
TAAATTTTTTTATATTTTAGGATTTTTC
Found at i:71866813 original size:27 final size:26
Alignment explanation
Indices: 71866764--71866814 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71866754 AATATTCCTT
**
71866764 AATTTTCTATATTTTTCTTATTTTAA
1 AATTTTCTATATTTTTCAAATTTTAA
*
71866790 AATTTTTTGATATTTTTCAAATTTT
1 AATTTTCT-ATATTTTTCAAATTTT
71866815 CTTCTACTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (26 bp):
AATTTTCTATATTTTTCAAATTTTAA
Found at i:71880057 original size:25 final size:25
Alignment explanation
Indices: 71880015--71880063 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
71880005 CCTAATTATT
* *
71880015 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
71880040 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
71880064 GGTCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:71882948 original size:26 final size:25
Alignment explanation
Indices: 71882923--71883000 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
71882913 TTACACATAT
* *
71882923 TTATTTAATAATAAAATAAAAAATA
1 TTATTTAATAATATAATAAATAATA
* *
71882948 TAATGTAAGTAATATAATAAATAATA
1 TTATTTAA-TAATATAATAAATAATA
* *
71882974 ATATATAAATAATATAATAAATAATA
1 TTAT-TTAATAATATAATAAATAATA
71883000 T
1 T
71883001 ACAAAGAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
25 6 0.14
26 34 0.81
27 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (25 bp):
TTATTTAATAATATAATAAATAATA
Found at i:71882995 original size:12 final size:12
Alignment explanation
Indices: 71882929--71883001 Score: 83
Period size: 12 Copynumber: 5.8 Consensus size: 12
71882919 ATATTTATTT
*
71882929 AATAATAAAATA
1 AATAATATAATA
*
71882941 AAAAATATAATGTA
1 AATAATATAA--TA
*
71882955 AGTAATATAATA
1 AATAATATAATA
71882967 AATAATAATATATA
1 AATAAT-ATA-ATA
71882981 AATAATATAATA
1 AATAATATAATA
71882993 AATAATATA
1 AATAATATA
71883002 CAAAGAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
12 27 0.52
13 6 0.12
14 19 0.37
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (12 bp):
AATAATATAATA
Found at i:71882999 original size:38 final size:41
Alignment explanation
Indices: 71882929--71883020 Score: 104
Period size: 40 Copynumber: 2.3 Consensus size: 41
71882919 ATATTTATTT
* *
71882929 AATAATAA-A-ATAAAAAATATAATGTAAGTAATATA-ATA-
1 AATAATAATATATAAAAAATATAA-GTAAATAATATACAAAG
*
71882967 AATAATAATATATAAATAATATAA-TAAATAATATACAAAG
1 AATAATAATATATAAAAAATATAAGTAAATAATATACAAAG
*
71883007 AAAAATAATATATA
1 AATAATAATATATA
71883021 CCCTTTTATA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
38 18 0.39
39 3 0.07
40 25 0.54
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (41 bp):
AATAATAATATATAAAAAATATAAGTAAATAATATACAAAG
Found at i:71883013 original size:26 final size:26
Alignment explanation
Indices: 71882958--71883013 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
71882948 TAATGTAAGT
* * *
71882958 AATATAATAAATAATAATATATAAAT
1 AATATAATAAATAATAATACAAAAAA
71882984 AATATAATAAATAAT-ATACAAAGAAA
1 AATATAATAAATAATAATACAAA-AAA
71883010 AATA
1 AATA
71883014 ATATATACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (26 bp):
AATATAATAAATAATAATACAAAAAA
Found at i:71884584 original size:44 final size:44
Alignment explanation
Indices: 71884534--71884761 Score: 366
Period size: 44 Copynumber: 5.2 Consensus size: 44
71884524 ACTCACGAAC
* * *
71884534 GCCAAATCTGTTATCTCCGATCTGCTCTCTGACAATATAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* * *
71884578 GCCAAATCTGCTATCTTCGATCTACTCTTTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
71884622 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
71884666 GCCAAATCTGCTATCTTCAATCTGCTCTCTGATAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
71884710 GCCAAATCTGCTATCTTCAATCTGCTCTCTGACAATATAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
71884754 GCCAAATC
1 GCCAAATC
71884762 ATCTTGGATC
Statistics
Matches: 171, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 171 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
Found at i:71889116 original size:43 final size:42
Alignment explanation
Indices: 71889050--71889137 Score: 113
Period size: 43 Copynumber: 2.1 Consensus size: 42
71889040 TCAATCAATC
* *
71889050 CTTGCCTTGTGTCCTCGGCAATATACGTGCCGATTTTCACCT
1 CTTGCCTTGTGTCCTCAGCAATATACGTGCCAATTTTCACCT
* * **
71889092 CTTNGCCTTGTGTTCTCAGTAATATGTGTGCCAATTTTCACCT
1 CTT-GCCTTGTGTCCTCAGCAATATACGTGCCAATTTTCACCT
71889135 CTT
1 CTT
71889138 TCCCTTCCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 3 0.08
43 36 0.92
ACGTcount: A:0.15, C:0.27, G:0.17, T:0.40
Consensus pattern (42 bp):
CTTGCCTTGTGTCCTCAGCAATATACGTGCCAATTTTCACCT
Found at i:71895776 original size:19 final size:20
Alignment explanation
Indices: 71895734--71895777 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
71895724 CCATATTAAC
** *
71895734 ACAGTTGGGCCCATTTCAAG
1 ACAGTTGGGCCCATAACAAA
71895754 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
71895773 ACAGT
1 ACAGT
71895778 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.20
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:71901987 original size:44 final size:41
Alignment explanation
Indices: 71901885--71901992 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 41
71901875 GTAACTCAGT
* * *
71901885 ATCAATGCCTCTGTCCCAAACAGGGTCTTACACGAAATCAG
1 ATCAATGCCTATGTCCCAGACAGGGTCTTACACGAAATCAA
* *
71901926 ATACGATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 AT-CAATGCCTATGTCCCAGACAGGGTCTTACACG-AAA--TCAA
*
71901971 ATCAAGGCCTATGTCCCAGACA
1 ATCAATGCCTATGTCCCAGACA
71901993 CGATCTTATA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
41 2 0.04
42 28 0.50
43 3 0.05
44 18 0.32
45 5 0.09
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (41 bp):
ATCAATGCCTATGTCCCAGACAGGGTCTTACACGAAATCAA
Found at i:71907247 original size:47 final size:47
Alignment explanation
Indices: 71907179--71907287 Score: 118
Period size: 47 Copynumber: 2.3 Consensus size: 47
71907169 TATAAACACA
*
71907179 ATATATAATAATATAAATAATATGATA-AGTAAT-ATATAAAAATATAT
1 ATATATAATAATATAAATAATATAATATA-TAATAATATAAAAATA-AT
* * *
71907226 ATATATTAA-AATGTAAGTAATATAATATATAATAATATATAAATAAT
1 ATATA-TAATAATATAAATAATATAATATATAATAATATAAAAATAAT
71907273 ATA-ATAAATAATATA
1 ATATAT-AATAATATA
71907288 CAAAGAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
45 1 0.02
46 3 0.06
47 34 0.65
48 14 0.27
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (47 bp):
ATATATAATAATATAAATAATATAATATATAATAATATAAAAATAAT
Found at i:71907272 original size:26 final size:26
Alignment explanation
Indices: 71907181--71907285 Score: 108
Period size: 26 Copynumber: 4.0 Consensus size: 26
71907171 TAAACACAAT
71907181 ATATAATAATATAA-ATAATATGATAAGTA
1 ATAT-ATAA-ATAATATAATAT-ATAA-TA
*
71907210 ATATATAAA-AATAT-ATATATATTA
1 ATATATAAATAATATAATATATAATA
* * *
71907234 AAATGTAAGTAATATAATATATAATA
1 ATATATAAATAATATAATATATAATA
*
71907260 ATATATAAATAATATAATAAATAATA
1 ATATATAAATAATATAATATATAATA
71907286 TACAAAGAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
24 8 0.12
25 8 0.12
26 37 0.58
27 3 0.05
28 4 0.06
29 4 0.06
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (26 bp):
ATATATAAATAATATAATATATAATA
Found at i:71907286 original size:12 final size:12
Alignment explanation
Indices: 71907178--71907287 Score: 77
Period size: 12 Copynumber: 9.1 Consensus size: 12
71907168 TTATAAACAC
*
71907178 AATATATAATA-
1 AATAAATAATAT
71907189 ATATAAATAATAT
1 A-ATAAATAATAT
* *
71907202 GATAAGTAATAT
1 AATAAATAATAT
*
71907214 ATAAAAATATATAT
1 A-ATAAATA-ATAT
* *
71907228 ATATTAA-AATGT
1 A-ATAAATAATAT
71907240 AAGTAATATAATAT
1 AA-TAA-ATAATAT
71907254 -AT-AATAATAT
1 AATAAATAATAT
71907264 -ATAAATAATAT
1 AATAAATAATAT
71907275 AATAAATAATAT
1 AATAAATAATAT
71907287 A
1 A
71907288 CAAAGAAAAA
Statistics
Matches: 79, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
10 9 0.11
11 11 0.14
12 38 0.48
13 8 0.10
14 13 0.16
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (12 bp):
AATAAATAATAT
Found at i:71907299 original size:26 final size:26
Alignment explanation
Indices: 71907244--71907299 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
71907234 AAATGTAAGT
* * * *
71907244 AATATAATATATAATAATATATAAAT
1 AATATAATAAATAATAATACAAAAAA
71907270 AATATAATAAATAAT-ATACAAAGAAA
1 AATATAATAAATAATAATACAAA-AAA
71907296 AATA
1 AATA
71907300 ATATATACCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
AATATAATAAATAATAATACAAAAAA
Found at i:71913392 original size:66 final size:66
Alignment explanation
Indices: 71913315--71913446 Score: 219
Period size: 66 Copynumber: 2.0 Consensus size: 66
71913305 AATCTAGATC
* * *
71913315 TAGTCATCAATTTCGGCAAAGGTATGAACCCTAGGGCCATTGTGGATGGTGGCCGAATATGTAAG
1 TAGTCATCAATTTCGACAAAGGTATGAACCCTAGGGCCATTGGGGATAGTGGCCGAATATGTAAG
71913380 A
66 A
* *
71913381 TAGTCATCAATTTCGATAAAGGTATGAACCCTAGGGCCATTGGGGATAGTGGTCGAATATGTAAG
1 TAGTCATCAATTTCGACAAAGGTATGAACCCTAGGGCCATTGGGGATAGTGGCCGAATATGTAAG
71913446 A
66 A
71913447 GATGATAATA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (66 bp):
TAGTCATCAATTTCGACAAAGGTATGAACCCTAGGGCCATTGGGGATAGTGGCCGAATATGTAAG
A
Found at i:71914135 original size:20 final size:21
Alignment explanation
Indices: 71914099--71914146 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
71914089 ATTTTGATAT
*
71914099 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
71914120 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
71914140 ACATGAT
1 ACATGAT
71914147 GTATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:71922321 original size:11 final size:11
Alignment explanation
Indices: 71922292--71922340 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
71922282 GATTTTGATA
*
71922292 TACATGATTTG
1 TACATGATATG
*
71922303 -ATATGATATG
1 TACATGATATG
71922313 TACATGATATG
1 TACATGATATG
71922324 T--ATGATATG
1 TACATGATATG
*
71922333 CACATGAT
1 TACATGAT
71922341 GTATTCATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
9 8 0.26
10 8 0.26
11 15 0.48
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (11 bp):
TACATGATATG
Found at i:71922329 original size:20 final size:21
Alignment explanation
Indices: 71922292--71922340 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
71922282 GATTTTGATA
*
71922292 TACATGATTTGATATGATATG
1 TACATGATATGATATGATATG
71922313 TACATGATATG-TATGATATG
1 TACATGATATGATATGATATG
*
71922333 CACATGAT
1 TACATGAT
71922341 GTATTCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (21 bp):
TACATGATATGATATGATATG
Found at i:71927014 original size:17 final size:17
Alignment explanation
Indices: 71926987--71927047 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
71926977 AGCAAGAATA
*
71926987 AAAAGAATAAAATAAATG
1 AAAATAATAAAATAAA-G
* *
71927005 AATA-AATAAATTAAAG
1 AAAATAATAAAATAAAG
* *
71927021 AAAATAATAAAAT-GAT
1 AAAATAATAAAATAAAG
71927037 AAAATAATAAA
1 AAAATAATAAA
71927048 TAATTAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
16 16 0.44
17 17 0.47
18 3 0.08
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (17 bp):
AAAATAATAAAATAAAG
Found at i:71928813 original size:13 final size:13
Alignment explanation
Indices: 71928795--71928821 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71928785 GCTCGGCAGG
71928795 GACACGCCCGTGT
1 GACACGCCCGTGT
71928808 GACACGCCCGTGT
1 GACACGCCCGTGT
71928821 G
1 G
71928822 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:71929362 original size:94 final size:94
Alignment explanation
Indices: 71929224--71929408 Score: 271
Period size: 94 Copynumber: 2.0 Consensus size: 94
71929214 GTAGGTCATG
* * * * ** * *
71929224 TGGCCATGTTGCCAGGCCATGTAACTCACTGTCGAACCCTTTATTGTGCACATGACTTGGGACAT
1 TGGCCATGTCGCCAAGCCATGTAACTCACTGTCGAACCCCTTATTATGCACACAACCTGGCACAT
71929289 GCCTGTGTGTCCAGGCCATGTAGGTCGCA
66 GCCTGTGTGTCCAGGCCATGTAGGTCGCA
*
71929318 TGGCCATGTCGCCAAGCCATGTAACTCACTGTTGAACCCCTTATTATGCACACAACCTGGCACAT
1 TGGCCATGTCGCCAAGCCATGTAACTCACTGTCGAACCCCTTATTATGCACACAACCTGGCACAT
* *
71929383 GCCTGTGTGTCCAGGCCGTGTGGGTC
66 GCCTGTGTGTCCAGGCCATGTAGGTC
71929409 AAAAAACACA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 80 1.00
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.26
Consensus pattern (94 bp):
TGGCCATGTCGCCAAGCCATGTAACTCACTGTCGAACCCCTTATTATGCACACAACCTGGCACAT
GCCTGTGTGTCCAGGCCATGTAGGTCGCA
Found at i:71933575 original size:46 final size:46
Alignment explanation
Indices: 71933525--71933697 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
71933515 TGGTTGAGCA
71933525 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
71933571 TCCGAACTTGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * *
71933616 CATCCGAACTTGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
*
71933664 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
71933698 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 8 0.08
46 54 0.51
47 29 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:71933681 original size:93 final size:93
Alignment explanation
Indices: 71933522--71933693 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
71933512 GGATGGTTGA
* * *
71933522 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCCAACTCGTTGAGT
71933587 TGAGTCCGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* * *
71933615 GCATCCGAACTTGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAATG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCCAA-CTCGTTGAG
71933679 TTGAGTCCGAGTTCA
65 TTGAGTCCGAGTTCA
71933694 CTTAGGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:71933959 original size:19 final size:20
Alignment explanation
Indices: 71933922--71933959 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71933912 ATAAGGTGGT
71933922 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
71933942 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
71933960 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:71942657 original size:31 final size:31
Alignment explanation
Indices: 71942619--71942678 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
71942609 TTCATATTTC
*
71942619 ATATTTCATAACACTGGCCCGAAGCCTTTTT
1 ATATTTCATAACACTGGACCGAAGCCTTTTT
**
71942650 ATATTTCATATTACTGGACCGAAGCCTTT
1 ATATTTCATAACACTGGACCGAAGCCTTT
71942679 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTGGACCGAAGCCTTTTT
Found at i:71942921 original size:24 final size:24
Alignment explanation
Indices: 71942870--71942987 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
71942860 GCTTTATCGT
*
71942870 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
71942895 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
71942919 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
71942942 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
71942965 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71942988 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 45 0.52
24 29 0.34
25 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:71943062 original size:20 final size:20
Alignment explanation
Indices: 71943039--71943103 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
71943029 ATGAATACAT
* *
71943039 CATGTGCATATAATACATAT
1 CATGTGCATATCATACATAC
* *
71943059 CATGTGCATAGCATACATGC
1 CATGTGCATATCATACATAC
71943079 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
71943099 CATGT
1 CATGT
71943104 TTACTAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:71944275 original size:12 final size:12
Alignment explanation
Indices: 71944244--71944283 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
71944234 TGGGCTGGTT
71944244 TGGAAGAAGGAGA
1 TGGAAGAA-GAGA
* *
71944257 AGGAAGAAAAGA
1 TGGAAGAAGAGA
71944269 TGGAAGAAGAGA
1 TGGAAGAAGAGA
71944281 TGG
1 TGG
71944284 TAGATTCGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.50, C:0.00, G:0.42, T:0.07
Consensus pattern (12 bp):
TGGAAGAAGAGA
Found at i:71958803 original size:27 final size:26
Alignment explanation
Indices: 71958768--71958879 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
71958758 AGCATGGATG
** *
71958768 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
71958794 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
71958822 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
71958849 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
71958876 CCAG
1 CCAG
71958880 GACACTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
26 6 0.08
27 55 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:71958832 original size:54 final size:54
Alignment explanation
Indices: 71958768--71958879 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
71958758 AGCATGGATG
* *
71958768 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
71958822 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
71958876 CCAG
1 CCAG
71958880 GACACTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:71960635 original size:28 final size:28
Alignment explanation
Indices: 71960595--71960650 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
71960585 TTAGTCGTCT
71960595 CGTTCCGATTATCGTCTTCCGAGGTAAG
1 CGTTCCGATTATCGTCTTCCGAGGTAAG
71960623 CGTTCCGATTATCGTCTTCCGAGGTAAG
1 CGTTCCGATTATCGTCTTCCGAGGTAAG
71960651 TCCTTAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (28 bp):
CGTTCCGATTATCGTCTTCCGAGGTAAG
Found at i:71961258 original size:39 final size:39
Alignment explanation
Indices: 71961215--71961458 Score: 357
Period size: 39 Copynumber: 6.3 Consensus size: 39
71961205 ATGCAAGACA
* * *
71961215 CTGGAAATATATCCGGGCCAAAGTCCCACAGGCTTTGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
71961254 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
71961293 CTGGAAATATATCCGGGCTAAAGTCCCGTAAGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
71961332 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
71961371 CTGGAAATATATCCGGGCCAAAGTCCCGCA-GCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
71961409 CTGGAAATGTATCCAGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
71961448 CT-GATAATATA
1 CTGGA-AATATA
71961459 ATTTCGGGTT
Statistics
Matches: 185, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 36 0.19
39 149 0.81
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:71967069 original size:39 final size:39
Alignment explanation
Indices: 71967026--71967270 Score: 339
Period size: 39 Copynumber: 6.3 Consensus size: 39
71967016 ATGCAAGACA
*
71967026 CTGGAAATATATCCAGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
71967065 CTGGAAATGTATCCGGGCCAAAGTCCCGCATGCTTCGTG
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* * *
71967104 CTGGAAATATATCCGGGCTAAAGTTCCGCAAGCTTCGTG
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* * *
71967143 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
71967182 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* * ** * *
71967221 CTGGAATTGTATCCGGGTTAAAGTCCCACAGGCTTTGTG
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
71967260 CT-GATAATATA
1 CTGGA-AATATA
71967271 ATTTCGGGTT
Statistics
Matches: 183, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 2 0.01
39 181 0.99
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (39 bp):
CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:71967155 original size:78 final size:78
Alignment explanation
Indices: 71967026--71967270 Score: 384
Period size: 78 Copynumber: 3.1 Consensus size: 78
71967016 ATGCAAGACA
* *
71967026 CTGGAAATATATCCAGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCC
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
* *
71967091 CGCATGCTTCGTG
66 CACAGGCTTCGTG
* * *
71967104 CTGGAAATATATCCGGGCTAAAGTTCCGCAAGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
71967169 CACAGGCTTCGTG
66 CACAGGCTTCGTG
* *
71967182 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAATTGTATCCGGGTTAAAGTCC
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
*
71967247 CACAGGCTTTGTG
66 CACAGGCTTCGTG
71967260 CT-GATAATATA
1 CTGGA-AATATA
71967271 ATTTCGGGTT
Statistics
Matches: 153, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
77 2 0.01
78 151 0.99
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (78 bp):
CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
CACAGGCTTCGTG
Found at i:71969647 original size:20 final size:21
Alignment explanation
Indices: 71969607--71969647 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
71969597 TTCGATTATG
*
71969607 AGGAAAAGAGAAGATAGAAGA
1 AGGAAAAGAGAAGATAAAAGA
*
71969628 AGGAAAAG-GATGATAAAAGA
1 AGGAAAAGAGAAGATAAAAGA
71969648 GGTAGTATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.61, C:0.00, G:0.32, T:0.07
Consensus pattern (21 bp):
AGGAAAAGAGAAGATAAAAGA
Found at i:71971579 original size:43 final size:42
Alignment explanation
Indices: 71971531--71971617 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 42
71971521 TCCGCTTTCA
** *
71971531 CTTGCTGGCATGTTAGACGTTTCCCTACCAACTCTGTTACTT
1 CTTGCTGGCATGTTAGACAATTCCCTACAAACTCTGTTACTT
71971573 NCTTGCTGGCATGTTAGACAATTCCCTACAAACTCTGTTACTT
1 -CTTGCTGGCATGTTAGACAATTCCCTACAAACTCTGTTACTT
71971616 CT
1 CT
71971618 CGTTTAAGTC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 2 0.05
43 39 0.95
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (42 bp):
CTTGCTGGCATGTTAGACAATTCCCTACAAACTCTGTTACTT
Found at i:71976441 original size:27 final size:27
Alignment explanation
Indices: 71976335--71976443 Score: 114
Period size: 27 Copynumber: 4.0 Consensus size: 27
71976325 AGCATGGCTG
* *
71976335 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* * * *
71976361 CTAGATATAGATAATCGTGGCAGAGCTA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
71976389 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
71976416 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
71976443 C
1 C
71976444 TAGGACGCTT
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 6 0.09
27 46 0.69
28 15 0.22
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:71978815 original size:48 final size:48
Alignment explanation
Indices: 71978715--71978848 Score: 187
Period size: 48 Copynumber: 2.8 Consensus size: 48
71978705 TAGGTGAAAG
* * * *
71978715 TAATAGTGCCTAGTTACCCGTTTGGGTTAAAACCTACACGAATGATGAA
1 TAATAGTGCTTCGTTACCCGTTAGGGTT-AAACCTACACGAATAATGAA
*
71978764 TAATAGTGCTTCGTTACCTGTTAGGGTTAAACCTACACGAATAATGAA
1 TAATAGTGCTTCGTTACCCGTTAGGGTTAAACCTACACGAATAATGAA
* * *
71978812 TAATAGTACTTCGTTACCCGTCAGGGTGAAACCTACA
1 TAATAGTGCTTCGTTACCCGTTAGGGTTAAACCTACA
71978849 TGATAAATAA
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
48 52 0.68
49 24 0.32
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (48 bp):
TAATAGTGCTTCGTTACCCGTTAGGGTTAAACCTACACGAATAATGAA
Found at i:71982420 original size:112 final size:112
Alignment explanation
Indices: 71982185--71982410 Score: 346
Period size: 112 Copynumber: 2.0 Consensus size: 112
71982175 ATCTTAGGAT
* * ** *
71982185 GGTGAAAATTCATACTTTAGTAAAATAAAGACATAAAAGTATTTTTTAGATTTTACCAATTCTAA
1 GGTGAAAATTCATACTTTAGAAAAATAAAGACATAAAACTAACTTGTAGATTTTACCAATTCTAA
71982250 GGACAAAAGACTAACTCGCTTCGGTGGCTGTAACTAATTATTATTTC
66 GGACAAAAGACTAACTCGCTTCGGTGGCTGTAACTAATTATTATTTC
71982297 GGTGAAAATTCATACTTTAGAAAAATAAAGACATAAAACTAACTTGTAGATTTTACCAATTCTAA
1 GGTGAAAATTCATACTTTAGAAAAATAAAGACATAAAACTAACTTGTAGATTTTACCAATTCTAA
** * * *
71982362 GGACGGAAGATTAACTCGCTTTC-GTGGCTTTAACTAATTCTTATTTC
66 GGACAAAAGACTAACTCGC-TTCGGTGGCTGTAACTAATTATTATTTC
71982409 GG
1 GG
71982411 GTTCTATTCA
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
112 100 0.97
113 3 0.03
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (112 bp):
GGTGAAAATTCATACTTTAGAAAAATAAAGACATAAAACTAACTTGTAGATTTTACCAATTCTAA
GGACAAAAGACTAACTCGCTTCGGTGGCTGTAACTAATTATTATTTC
Found at i:71984019 original size:18 final size:18
Alignment explanation
Indices: 71983984--71984021 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
71983974 CGAGTTAAAA
**
71983984 AATCGAGTTATTTGAGTT
1 AATCGAGTTATTCAAGTT
71984002 AATCGAGTTATTCAAGTT
1 AATCGAGTTATTCAAGTT
71984020 AA
1 AA
71984022 CTTGAAGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.39
Consensus pattern (18 bp):
AATCGAGTTATTCAAGTT
Found at i:71996343 original size:22 final size:21
Alignment explanation
Indices: 71996318--71996366 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 21
71996308 AGAAGATCTT
71996318 TAATTTATA-ATTATATCTATTA
1 TAATTTATATATTA-ATCT-TTA
71996340 TAATTTATATATTAATCTTTA
1 TAATTTATATATTAATCTTTA
71996361 TCAATT
1 T-AATT
71996367 AGCATAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.16
22 17 0.68
23 4 0.16
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATTTATATATTAATCTTTA
Found at i:72000342 original size:54 final size:54
Alignment explanation
Indices: 72000260--72000366 Score: 214
Period size: 54 Copynumber: 2.0 Consensus size: 54
72000250 AAGGGTCCAG
72000260 TTGAACCGCACTGGTCGAACCATATTGAGTGAACCGAACCAGCCACTAAATGGT
1 TTGAACCGCACTGGTCGAACCATATTGAGTGAACCGAACCAGCCACTAAATGGT
72000314 TTGAACCGCACTGGTCGAACCATATTGAGTGAACCGAACCAGCCACTAAATGG
1 TTGAACCGCACTGGTCGAACCATATTGAGTGAACCGAACCAGCCACTAAATGG
72000367 GCAGCCCAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (54 bp):
TTGAACCGCACTGGTCGAACCATATTGAGTGAACCGAACCAGCCACTAAATGGT
Found at i:72007833 original size:16 final size:16
Alignment explanation
Indices: 72007809--72007842 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72007799 AATTTTCCAT
*
72007809 TTGGTGAACTCTAAGG
1 TTGGCGAACTCTAAGG
*
72007825 TTGGCGAACTCTAGGG
1 TTGGCGAACTCTAAGG
72007841 TT
1 TT
72007843 TGATGGACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.32, T:0.32
Consensus pattern (16 bp):
TTGGCGAACTCTAAGG
Found at i:72008689 original size:19 final size:19
Alignment explanation
Indices: 72008665--72008711 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
72008655 GACACAGGGG
72008665 CACGCCCGTGTGC-CTTTGA
1 CACGCCCGTGT-CTCTTTGA
72008684 CACGCCCGTGTCTCTTTGA
1 CACGCCCGTGTCTCTTTGA
72008703 CACGCCCGT
1 CACGCCCGT
72008712 TTCTTTAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 1 0.04
19 26 0.96
ACGTcount: A:0.11, C:0.40, G:0.23, T:0.26
Consensus pattern (19 bp):
CACGCCCGTGTCTCTTTGA
Found at i:72035709 original size:43 final size:42
Alignment explanation
Indices: 72035624--72035732 Score: 103
Period size: 43 Copynumber: 2.6 Consensus size: 42
72035614 GTCTAGGACA
* * *
72035624 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCAATTGAGATT
1 TCGTATAAGACCATGTCTGGGACATAGGCATCAATTGAGATT
* * * *
72035666 TATGTATAAGACCATGTCTGGGACATCGGCATCGTATT-TGATT
1 T-CGTATAAGACCATGTCTGGGACATAGGCATC-AATTGAGATT
* * *
72035709 TCGTGTAAGACCCTGTTTGGGACA
1 TCGTATAAGACCATGTCTGGGACA
72035733 GAGACACCGA
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 20 0.37
43 31 0.57
44 3 0.06
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TCGTATAAGACCATGTCTGGGACATAGGCATCAATTGAGATT
Found at i:72036605 original size:65 final size:65
Alignment explanation
Indices: 72036536--72036658 Score: 185
Period size: 65 Copynumber: 1.9 Consensus size: 65
72036526 GTAATATCCC
* **
72036536 AAGTATCACACGACCATAGTACACGGGCGTG-TTATATGGCCGTGGGCTAAAGTCAGTAGCTAGC
1 AAGTATCACACGACCATAGTACACGGGCGTGCCTAT-TGGCCGTGGGAAAAAGTCAGTAGCTAGC
72036600 T
65 T
* *
72036601 AAGTATCACACGGCCATAGTACACGGGCGTGCCTATTGGCCGTGTGAAAAAGTCAGTA
1 AAGTATCACACGACCATAGTACACGGGCGTGCCTATTGGCCGTGGGAAAAAGTCAGTA
72036659 TAGGACCTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
65 49 0.94
66 3 0.06
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (65 bp):
AAGTATCACACGACCATAGTACACGGGCGTGCCTATTGGCCGTGGGAAAAAGTCAGTAGCTAGCT
Found at i:72038995 original size:48 final size:48
Alignment explanation
Indices: 72038891--72039031 Score: 147
Period size: 48 Copynumber: 2.9 Consensus size: 48
72038881 TCGGTATCGA
* *
72038891 ATGTGATCCCATGGAAGACCATGTCTGAGACATGGTATTGGCATCGAT
1 ATGTGATCCCATGGAAGACCATGTCTGAGACATGGCATTGGCATCAAT
* ** * * * *
72038939 CTACGATCCCGTGTAAGACCATGTCTGGGACATGGCGTTGGCATCAAT
1 ATGTGATCCCATGGAAGACCATGTCTGAGACATGGCATTGGCATCAAT
* * * * * *
72038987 ATGTGATCCCACGTATGACCATATCTGAGATATGGCATTAGCATC
1 ATGTGATCCCATGGAAGACCATGTCTGAGACATGGCATTGGCATC
72039032 CTACCATGTG
Statistics
Matches: 73, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (48 bp):
ATGTGATCCCATGGAAGACCATGTCTGAGACATGGCATTGGCATCAAT
Found at i:72045653 original size:48 final size:48
Alignment explanation
Indices: 72045507--72045736 Score: 175
Period size: 48 Copynumber: 4.9 Consensus size: 48
72045497 TAGGGTTATG
* * * *
72045507 TACGATCCAATGTAAGACCATGTTTGGGACATGGCTTTGGCATCGATA
1 TACGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
*** ** * * * * *
72045555 TGTAATTTCGTATAAGACCATAGCTGGG-C-T---ATCGACATCGATA
1 TACGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
** * *
72045598 TGTGATCCCATGTAAGACTATATCTGGGACATGGCATTGGCATCGATC
1 TACGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
* * **
72045646 TACGATCCCGTGTAAGACCATGTCTGGGACATGGTGTTGGCATCGATA
1 TACGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
** * * *
72045694 TTTGATCCCACGTAAGACCATATC-AGGATATGGCATTGGCATC
1 TACGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATC
72045737 CTACCATGTG
Statistics
Matches: 136, Mismatches: 41, Indels: 11
0.72 0.22 0.06
Matches are distributed among these distances:
43 31 0.23
44 1 0.01
45 1 0.01
46 1 0.01
47 16 0.12
48 86 0.63
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (48 bp):
TACGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
Found at i:72045665 original size:91 final size:93
Alignment explanation
Indices: 72045510--72045736 Score: 219
Period size: 91 Copynumber: 2.4 Consensus size: 93
72045500 GGTTATGTAC
* * * * ** **
72045510 GATCCAATGTAAGACCATGTTTGGGACATGGCTTTGGCATCGATATGTAATTTCGTATAAGACCA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATACAATCCCGTATAAGACCA
72045575 TAG-CTGGG-C-TATCGACATCGATATGT
66 T-GTCTGGGACGTATCGACATCGATATGT
* * * *
72045601 GATCCCATGTAAGACTATATCTGGGACATGGCATTGGCATCGATCTACGATCCCGTGTAAGACCA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATACAATCCCGTATAAGACCA
* * * *
72045666 TGTCTGGGACATGGTGTTGGCATCGATATTT
66 TGTCTGGGAC---GTATCGACATCGATATGT
* * *
72045697 GATCCCACGTAAGACCATATC-AGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATC
72045737 CTACCATGTG
Statistics
Matches: 110, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
90 1 0.01
91 59 0.54
92 1 0.01
95 17 0.15
96 32 0.29
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (93 bp):
GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATACAATCCCGTATAAGACCA
TGTCTGGGACGTATCGACATCGATATGT
Found at i:72057182 original size:39 final size:40
Alignment explanation
Indices: 72057031--72057200 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
72057021 GGACTAAGAT
* * *
72057031 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
72057071 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
72057111 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
72057151 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
72057190 CCGAAGGCATT
1 CCGAAGGCATT
72057201 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:72057220 original size:79 final size:80
Alignment explanation
Indices: 72057053--72057235 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
72057043 GTGCGAGATA
* * * *
72057053 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
72057118 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
72057133 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
72057197 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
72057212 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
72057236 TACGCGAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.55
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:72060517 original size:24 final size:24
Alignment explanation
Indices: 72060485--72060555 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
72060475 CTGTCAGGAG
72060485 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
72060509 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
72060533 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
72060556 GGACATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:72060567 original size:48 final size:48
Alignment explanation
Indices: 72060485--72060578 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
72060475 CTGTCAGGAG
** * *
72060485 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
72060533 AGGATTTAGGAGCAGATAAGGG-AGGACATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
72060579 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.34, C:0.05, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:72067327 original size:130 final size:130
Alignment explanation
Indices: 72067147--72067388 Score: 457
Period size: 130 Copynumber: 1.9 Consensus size: 130
72067137 GTTATTTGCG
* * *
72067147 CACCTCAGATCAATAGTCTTGCTTTTGCAATTCACAACTGCATCATGCGCGGTCAGCCAATCCAA
1 CACCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAA
72067212 ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGCCGGAAAATAGGAATCTA
66 ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGCCGGAAAATAGGAATCTA
72067277 CACCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAA
1 CACCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAA
72067342 ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCG
66 ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCG
72067389 GCACCTCAGA
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.21
Consensus pattern (130 bp):
CACCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAA
ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGCCGGAAAATAGGAATCTA
Found at i:72067475 original size:113 final size:113
Alignment explanation
Indices: 72067277--72067501 Score: 423
Period size: 113 Copynumber: 2.0 Consensus size: 113
72067267 TAGGAATCTA
72067277 CACCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAA
1 CACCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAA
72067342 ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGG
66 ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGG
* * *
72067390 CACCTCAGATCAATAGTCTTGCTTTTGCAATTCACAACTGCATCATGCGCGGTCAGCCAATCCAA
1 CACCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAA
72067455 ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCG
66 ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCG
72067502 CCGGAAAACA
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 109 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (113 bp):
CACCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAA
ACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGG
Found at i:72071317 original size:54 final size:53
Alignment explanation
Indices: 72071233--72071344 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 53
72071223 AGGAAGAGTC
* * *
72071233 CTGGTGGCTATGCCACAATTCTCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGACTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTATT
* * * *
72071287 CTGGTGACTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGACTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTATT
72071340 CTGGT
1 CTGGT
72071345 AGCCATGCTG
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 39 0.76
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38
Consensus pattern (53 bp):
CTGGTGACTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTATT
Found at i:72071340 original size:26 final size:26
Alignment explanation
Indices: 72071233--72071344 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
72071223 AGGAAGAGTC
* * * *
72071233 CTGGTGGCTATGCCACAATTCTCTGAT
1 CTGGTGACTCTGCCAC-ATTATCTGTT
* *
72071260 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGACTCTGCCACAT-TATCTGTT
72071287 CTGGTGACTCTGCCACAATTATCTGTT
1 CTGGTGACTCTGCCAC-ATTATCTGTT
*
72071314 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGACTCTGCCACATTATCTGTT
72071340 CTGGT
1 CTGGT
72071345 AGCCATGCTG
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 17 0.22
27 57 0.75
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGTT
Found at i:72073568 original size:43 final size:43
Alignment explanation
Indices: 72073455--72073644 Score: 219
Period size: 43 Copynumber: 4.4 Consensus size: 43
72073445 TCCTAGATAT
* *
72073455 GGTCTTACATGTTATCAC-ATATCGATGCCAC-GTCCCACACAG
1 GGTCTTACATGTAATCACAATA-CAATGCCACTGTCCCACACAG
* * * * * *
72073497 GATCTTACACG-AAGTC-GATTAACGATGCCGA-TGTCCCACACAT
1 GGTCTTACATGTAA-TCACAAT-ACAATGCC-ACTGTCCCACACAG
* *
72073540 GGTCTTACACGTAATCACAATACAATGCCATTGTCCCACACAG
1 GGTCTTACATGTAATCACAATACAATGCCACTGTCCCACACAG
72073583 GGTCTTACATGTAATCACAATACAATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCACAATACAATGCCACTGTCCCACACAG
72073626 GGTCTTACATGTAATCACA
1 GGTCTTACATGTAATCACA
72073645 TCTCGATAAC
Statistics
Matches: 127, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 20 0.16
43 102 0.80
44 4 0.03
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGTAATCACAATACAATGCCACTGTCCCACACAG
Found at i:72078107 original size:19 final size:19
Alignment explanation
Indices: 72078083--72078121 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
72078073 ATGTACTTAG
72078083 TTTATCTTTCCACTAAGAA
1 TTTATCTTTCCACTAAGAA
72078102 TTTATCTTTCCACTAAGAA
1 TTTATCTTTCCACTAAGAA
72078121 T
1 T
72078122 CAATCTCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
TTTATCTTTCCACTAAGAA
Found at i:72078127 original size:19 final size:19
Alignment explanation
Indices: 72078086--72078127 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
72078076 TACTTAGTTT
**
72078086 ATCTTTCCACTAAGAATTT
1 ATCTTTCCACTAAGAATCA
72078105 ATCTTTCCACTAAGAATCA
1 ATCTTTCCACTAAGAATCA
72078124 ATCT
1 ATCT
72078128 CTCTTCTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (19 bp):
ATCTTTCCACTAAGAATCA
Found at i:72078409 original size:18 final size:17
Alignment explanation
Indices: 72078375--72078408 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
72078365 TGTCCCTAAA
72078375 CTGTTTTTTCTCTTTTT
1 CTGTTTTTTCTCTTTTT
72078392 CTGTTCTTTTCT-TTTTT
1 CTGTT-TTTTCTCTTTTT
72078409 TACTCATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.00, C:0.18, G:0.06, T:0.76
Consensus pattern (17 bp):
CTGTTTTTTCTCTTTTT
Found at i:72081013 original size:275 final size:275
Alignment explanation
Indices: 72080522--72081071 Score: 965
Period size: 275 Copynumber: 2.0 Consensus size: 275
72080512 ACCCGGTAAT
*
72080522 TTTAGGTGATTTTAATCCATAAGAGGAAAAGGGGGGTTCTGGTTAACAGGGGTCTTAAATATTAT
1 TTTAGGTGATTTTAATCCATAAGAGGAAAAGGGGGGTTCTGGTTAACAAGGGTCTTAAATATTAT
*
72080587 TTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACGCCACTGCCAAGGCTAT
66 TTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACGCCACTGCAAAGGCTAT
* *
72080652 AAAAGTGGCGTATGGATGCTAGGGAGAGCTGAGGTTCAAGTCACAATGACAACATATTAAGGGAA
131 AAAAGTGGCGTATGAATGCTAGGGAGAGCTAAGGTTCAAGTCACAATGACAACATATTAAGGGAA
* * *
72080717 TTATTATTTTTATGTTCAGAAAACATAAGCAGTGGAACTGAAGTGAAAGTCTGTCAGGAGAGGAT
196 TTATTATTTTTATGTTCAGAAAACATAAGCAATGGAACTGAAGCGAAAGTCTATCAGGAGAGGAT
72080782 TTAGGAGTTGATAAG
261 TTAGGAGTTGATAAG
*
72080797 TTTAGGTGATTTTAATCCATAAGAGGAAAAGGGGGGTTTTGGTTAACAAGGGTCTTAAATATTAT
1 TTTAGGTGATTTTAATCCATAAGAGGAAAAGGGGGGTTCTGGTTAACAAGGGTCTTAAATATTAT
* *
72080862 TTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACGCTACTGGAAAGGCTAT
66 TTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACGCCACTGCAAAGGCTAT
* *
72080927 AAAAGTGGCGTCTGAATGCTAGGGGGAGCTAAGGTTCAAGTCACAATGACAACATATTAAGGGAA
131 AAAAGTGGCGTATGAATGCTAGGGAGAGCTAAGGTTCAAGTCACAATGACAACATATTAAGGGAA
** *
72080992 TTATTATTTTTATGTTCAGAAAAGGTAAGCAATGGAACTGAAGCGAAAGTCTATCAGGATAGGAT
196 TTATTATTTTTATGTTCAGAAAACATAAGCAATGGAACTGAAGCGAAAGTCTATCAGGAGAGGAT
72081057 TTAGGAGTTGATAAG
261 TTAGGAGTTGATAAG
72081072 GGATGGGTCT
Statistics
Matches: 260, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
275 260 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (275 bp):
TTTAGGTGATTTTAATCCATAAGAGGAAAAGGGGGGTTCTGGTTAACAAGGGTCTTAAATATTAT
TTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACGCCACTGCAAAGGCTAT
AAAAGTGGCGTATGAATGCTAGGGAGAGCTAAGGTTCAAGTCACAATGACAACATATTAAGGGAA
TTATTATTTTTATGTTCAGAAAACATAAGCAATGGAACTGAAGCGAAAGTCTATCAGGAGAGGAT
TTAGGAGTTGATAAG
Found at i:72081260 original size:230 final size:230
Alignment explanation
Indices: 72080846--72081305 Score: 812
Period size: 230 Copynumber: 2.0 Consensus size: 230
72080836 TGGTTAACAA
72080846 GGGTCTTAAATATTATTTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACG
1 GGGTCTTAAATATTATTTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACG
* * * *
72080911 CTACTGGAAAGGCTATAAAAGTGGCGTCTGAATGCTAGGGGGAGCTAAGGTTCAAGTCACAATGA
66 CCACTGCAAAGGCTATAAAAGTGGCGTATGAATGCTAGGGAGAGCTAAGGTTCAAGTCACAATGA
**
72080976 CAACATATTAAGGGAATTATTATTTTTATGTTCAGAAAAGGTAAGCAATGGAACTGAAGCGAAAG
131 CAACATATTAAGGGAATTATTATTTTTATGTTCAGAAAACATAAGCAATGGAACTGAAGCGAAAG
72081041 TCTATCAGGATAGGATTTAGGAGTTGATAAGGGAT
196 TCTATCAGGATAGGATTTAGGAGTTGATAAGGGAT
72081076 GGGTCTTAAATATTATTTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACG
1 GGGTCTTAAATATTATTTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACG
* * *
72081141 CCACTGCCAAGGCTATAAAAGTGGCGTATGGATGCTAGGGAGAGCTGAGGTTCAAGTCACAATGA
66 CCACTGCAAAGGCTATAAAAGTGGCGTATGAATGCTAGGGAGAGCTAAGGTTCAAGTCACAATGA
* *
72081206 CAACATATTAAGGGAATTATTATTTTTATGTTCAGAAAACATAAGCAGTGGAACTGAAGTGAAAG
131 CAACATATTAAGGGAATTATTATTTTTATGTTCAGAAAACATAAGCAATGGAACTGAAGCGAAAG
*
72081271 TCTGTCAGGATAGGATTTAGGAGTTGATAAGGGAT
196 TCTATCAGGATAGGATTTAGGAGTTGATAAGGGAT
72081306 AGGATTTAGG
Statistics
Matches: 218, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
230 218 1.00
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.26
Consensus pattern (230 bp):
GGGTCTTAAATATTATTTGGGTAAAATAAGACATAAGGAAGCAAGTGGCAAAGTGGCATGTGACG
CCACTGCAAAGGCTATAAAAGTGGCGTATGAATGCTAGGGAGAGCTAAGGTTCAAGTCACAATGA
CAACATATTAAGGGAATTATTATTTTTATGTTCAGAAAACATAAGCAATGGAACTGAAGCGAAAG
TCTATCAGGATAGGATTTAGGAGTTGATAAGGGAT
Found at i:72081310 original size:24 final size:24
Alignment explanation
Indices: 72081278--72081328 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
72081268 AAGTCTGTCA
**
72081278 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
72081302 GGATAGGATTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
72081326 GGA
1 GGA
72081329 GGAAATCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:72081653 original size:154 final size:154
Alignment explanation
Indices: 72081367--72081677 Score: 568
Period size: 154 Copynumber: 2.0 Consensus size: 154
72081357 GAGGTGGCCG
*
72081367 GCCAAGGGACTTTAGCATGGGAATTTCGGCTAGGGTTAGTGCTAGTATAAATTCGGCATTAGTGG
1 GCCAAGGGACTTTAGCATGGGAATTTCGGCTAGGGTTAGTGCCAGTATAAATTCGGCATTAGTGG
* * *
72081432 TAAGTGGTGTCGTTTCCTGACCATTCTCTTCTTCTTTTCTTTTTCTCTTCTCTCCATACACTGAT
66 TAAGTGGTGTCGTTTCCTGACCATTCCCTTCTTCTTTTCCTTTTATCTTCTCTCCATACACTGAT
72081497 TCTTTTCTTCTTCTTTTCCCCATA
131 TCTTTTCTTCTTCTTTTCCCCATA
72081521 GCCAAGGGACTTTAGCATGGGAATTTCGGCTAGGGTTAGTGCCAGTATAAATTCGGCATTAGTGG
1 GCCAAGGGACTTTAGCATGGGAATTTCGGCTAGGGTTAGTGCCAGTATAAATTCGGCATTAGTGG
* *
72081586 TAAGTGGTGTCGTTTCCTGACCATTCCCTTCTTCTTTTCCTTTTATCTTCTCTCCATCCACTTAT
66 TAAGTGGTGTCGTTTCCTGACCATTCCCTTCTTCTTTTCCTTTTATCTTCTCTCCATACACTGAT
72081651 TCTTTTCTTCTTCTTTTCCCCATA
131 TCTTTTCTTCTTCTTTTCCCCATA
72081675 GCC
1 GCC
72081678 GAATCCTTCA
Statistics
Matches: 151, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
154 151 1.00
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (154 bp):
GCCAAGGGACTTTAGCATGGGAATTTCGGCTAGGGTTAGTGCCAGTATAAATTCGGCATTAGTGG
TAAGTGGTGTCGTTTCCTGACCATTCCCTTCTTCTTTTCCTTTTATCTTCTCTCCATACACTGAT
TCTTTTCTTCTTCTTTTCCCCATA
Found at i:72081897 original size:56 final size:56
Alignment explanation
Indices: 72081807--72081917 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
72081797 GCCAAATCTC
72081807 TTATTTTTCTCATCATCTTTGGCCAATTCACTCAACCTCTAAACCCCAGGTTTCTA
1 TTATTTTTCTCATCATCTTTGGCCAATTCACTCAACCTCTAAACCCCAGGTTTCTA
* *
72081863 TTATTTTTCTCATCATCTTTGGCCGATTCTCTCAACCTCTAAACCCCAGGTTTCT
1 TTATTTTTCTCATCATCTTTGGCCAATTCACTCAACCTCTAAACCCCAGGTTTCT
72081918 GTCACAATAC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (56 bp):
TTATTTTTCTCATCATCTTTGGCCAATTCACTCAACCTCTAAACCCCAGGTTTCTA
Found at i:72082212 original size:150 final size:150
Alignment explanation
Indices: 72081941--72082235 Score: 536
Period size: 150 Copynumber: 2.0 Consensus size: 150
72081931 AAGTAAAAAC
*
72081941 CCTCATATTTTATCTTTCTCTACACTTTTGCAAAAAGCTGAAACTCCCACACTATCCTAGGGACA
1 CCTCATATTTTATCTTTCTCTACACTTTTGCAAAAAGCCGAAACTCCCACACTATCCTAGGGACA
*
72082006 TAGCCGAATACTGAGATCACTGAGGGCTCGACTTTTGTTATCGTTTGAGGGCTTAGAACTGCATC
66 TAGCCGAATACTGAGATCACTGAGGGCTAGACTTTTGTTATCGTTTGAGGGCTTAGAACTGCATC
72082071 AGAATCAAGTAGGAACTAAA
131 AGAATCAAGTAGGAACTAAA
* *
72082091 CCTCATATTTTATCTTTCTCTACACTTTTGCAAAAAGCCGGAACTCTCACACTATCCTAGGGACA
1 CCTCATATTTTATCTTTCTCTACACTTTTGCAAAAAGCCGAAACTCCCACACTATCCTAGGGACA
* *
72082156 TAGCCGAATACTGAGATCACTGAGGGCTAGACTTTTGTTATTGTTTGAGGTCTTAGAACTGCATC
66 TAGCCGAATACTGAGATCACTGAGGGCTAGACTTTTGTTATCGTTTGAGGGCTTAGAACTGCATC
72082221 AGAATCAAGTAGGAA
131 AGAATCAAGTAGGAA
72082236 ATAAGGGGGA
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
150 139 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (150 bp):
CCTCATATTTTATCTTTCTCTACACTTTTGCAAAAAGCCGAAACTCCCACACTATCCTAGGGACA
TAGCCGAATACTGAGATCACTGAGGGCTAGACTTTTGTTATCGTTTGAGGGCTTAGAACTGCATC
AGAATCAAGTAGGAACTAAA
Found at i:72082540 original size:129 final size:128
Alignment explanation
Indices: 72082305--72082562 Score: 453
Period size: 129 Copynumber: 2.0 Consensus size: 128
72082295 GCATATTTTA
*
72082305 AGAAAAGCCGGAATCCCTAAAAGGTTAGGGAGGTTGTCATTTTTTTGGACTTGTAGCCCTAAGGG
1 AGAAAAGCCGGAATCCCTAAAAGGTTAGGGAGGTTGTCATTTTTTTGGACTTGTAGCCCTAAAGG
*
72082370 GTTGTGATAATAGTACTATTTTGGTAATAGTGTGATAAAGAGGCTGTTGATCAAGGGCTTAGAC
66 GTTGTGATAATAGTACTATTTTGGTAATAGTGTGATAAAGAGGCTGTTG-GCAAGGGCTTAGAC
*
72082434 AGAAAAGCCGGAATCCCTAAAAGGTTAGGGAGGTTGTCGTTTTTTTGGACTTGTAGCCCTAAAGG
1 AGAAAAGCCGGAATCCCTAAAAGGTTAGGGAGGTTGTCATTTTTTTGGACTTGTAGCCCTAAAGG
* * *
72082499 GTTGTGATAATAGTATTATTTTGGTAATAGTGTGATTAAGAGGCTGTTGGCAAGGGCTTGGAC
66 GTTGTGATAATAGTACTATTTTGGTAATAGTGTGATAAAGAGGCTGTTGGCAAGGGCTTAGAC
72082562 A
1 A
72082563 AGTGAAGCGA
Statistics
Matches: 123, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
128 13 0.11
129 110 0.89
ACGTcount: A:0.28, C:0.11, G:0.29, T:0.31
Consensus pattern (128 bp):
AGAAAAGCCGGAATCCCTAAAAGGTTAGGGAGGTTGTCATTTTTTTGGACTTGTAGCCCTAAAGG
GTTGTGATAATAGTACTATTTTGGTAATAGTGTGATAAAGAGGCTGTTGGCAAGGGCTTAGAC
Found at i:72083038 original size:167 final size:167
Alignment explanation
Indices: 72082762--72083094 Score: 524
Period size: 167 Copynumber: 2.0 Consensus size: 167
72082752 GTGTGTAACT
*
72082762 GACACCCTCTCATAGACTAGATCGGCAAAAGCCGAAAAACTGAAATACCGAAAAGTTGGTATTTT
1 GACACCCTCTCATAGACTAGATCGGCAAAAGCCGAAAAACCGAAATACCGAAAAGTTGGTATTTT
* * ** * * *
72082827 GGGAATTTATGAGTGTGCGAATGCTCGTAAGATATTTGGGTTTGTATGTTTGGTATTTTGAAGGT
66 AGGAAATTACAAGTGTGCGAATGCTCGTAAGATAGTTGGGTTTGTATGTTTGGTACTCTGAAGGT
*
72082892 AATAAACTGCAGTACGTGTGATTTCGTGCATTTTGAG
131 AATAAACTGCAGTACGTGCGATTTCGTGCATTTTGAG
* *
72082929 GACACCCTCTCATAGACTAGATCGGCAAAAGCCGAAAAGCCGAAATGCCGAAAAGTTGGTATTTT
1 GACACCCTCTCATAGACTAGATCGGCAAAAGCCGAAAAACCGAAATACCGAAAAGTTGGTATTTT
* *
72082994 AGGAAATTGCAAGTGTGTGAATGCTCGGT-AGATAGTTGGGTTTGTATGTTTGGTACTCTGAAGG
66 AGGAAATTACAAGTGTGCGAATGCTC-GTAAGATAGTTGGGTTTGTATGTTTGGTACTCTGAAGG
*
72083058 TAATAAACTGCGGTACGTGCGATTTCGTGCATTTTGA
130 TAATAAACTGCAGTACGTGCGATTTCGTGCATTTTGA
72083095 TAACTTGGGC
Statistics
Matches: 151, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
167 149 0.99
168 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (167 bp):
GACACCCTCTCATAGACTAGATCGGCAAAAGCCGAAAAACCGAAATACCGAAAAGTTGGTATTTT
AGGAAATTACAAGTGTGCGAATGCTCGTAAGATAGTTGGGTTTGTATGTTTGGTACTCTGAAGGT
AATAAACTGCAGTACGTGCGATTTCGTGCATTTTGAG
Found at i:72083441 original size:27 final size:26
Alignment explanation
Indices: 72083400--72083493 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 26
72083390 AGGAAGTGTC
*
72083400 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
72083427 CTCGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
72083454 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
*
72083482 CTGGTGACTCTG
1 CTGGTGGCTCTG
72083494 TCGAGTTCAA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.04
27 41 0.73
28 13 0.23
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:72083664 original size:27 final size:26
Alignment explanation
Indices: 72083623--72083734 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
72083613 AAAGAGCGTC
*
72083623 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
72083650 CTCGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
72083677 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
72083705 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
72083731 CTGG
1 CTGG
72083735 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:72083727 original size:54 final size:54
Alignment explanation
Indices: 72083623--72083734 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
72083613 AAAGAGCGTC
*
72083623 CTGGTGGCTATGCCACAATTATCTGATCTCGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTCGTGACTCTGCCACATATATCTGTT
* * * * *
72083677 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTCGTGACTCTGCCACATATATCTGTT
72083731 CTGG
1 CTGG
72083735 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTCGTGACTCTGCCACATATATCTGTT
Found at i:72089366 original size:27 final size:26
Alignment explanation
Indices: 72089326--72089437 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
72089316 AGGAAGCGTC
*
72089326 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
72089353 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
72089380 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
72089408 TTGGTGACTCTGGCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
72089434 CTGG
1 CTGG
72089438 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.71
28 15 0.21
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:72089430 original size:54 final size:54
Alignment explanation
Indices: 72089326--72089437 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
72089316 AGGAAGCGTC
*
72089326 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
72089380 CTGGTGGTTCTGCCACGATTATCTGTATTTGGTGACTCTGGCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
72089434 CTGG
1 CTGG
72089438 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:72099930 original size:22 final size:20
Alignment explanation
Indices: 72099875--72099917 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
72099865 AAAATAGGCA
72099875 CTACATATTCTCTAATGGGT
1 CTACATATTCTCTAATGGGT
72099895 CTACATATTCTCTAATGGGT
1 CTACATATTCTCTAATGGGT
72099915 CTA
1 CTA
72099918 TCACTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.40
Consensus pattern (20 bp):
CTACATATTCTCTAATGGGT
Found at i:72103277 original size:16 final size:16
Alignment explanation
Indices: 72103256--72103286 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
72103246 TGTAAGATCG
72103256 ATGAAATGAGGTTTAC
1 ATGAAATGAGGTTTAC
72103272 ATGAAATGAGGTTTA
1 ATGAAATGAGGTTTA
72103287 TCGAGGTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.26, T:0.32
Consensus pattern (16 bp):
ATGAAATGAGGTTTAC
Found at i:72106889 original size:6 final size:6
Alignment explanation
Indices: 72106878--72106914 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
72106868 AGTCACCTAT
72106878 CCTTAC CCTTAC CCTTAC CCTT-- CCTCTAC CCTTAC CC
1 CCTTAC CCTTAC CCTTAC CCTTAC CCT-TAC CCTTAC CC
72106915 CTCCCACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
4 3 0.11
5 1 0.04
6 21 0.75
7 3 0.11
ACGTcount: A:0.14, C:0.54, G:0.00, T:0.32
Consensus pattern (6 bp):
CCTTAC
Found at i:72111846 original size:47 final size:47
Alignment explanation
Indices: 72111777--72112133 Score: 176
Period size: 46 Copynumber: 7.6 Consensus size: 47
72111767 GTGCCAATGT
* *
72111777 CATGTCCCATACATGGTCTTACACTGGCTCATC-CATCA-AGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-ATAGTCGATGC
* *
72111824 CATGTGCCAGACATGGTCTTACACTAGCTCTCACATATTTGTGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATA--T-AGTCGATGC
* * * * *
72111874 CATGTCCCAGAAATGGTCTTACACTAACAC-CTC-TATACGTGCCAATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATA-GT--CGATGC
* * * * *
72111922 CATGTCCCAAACATGGTCTTACACT-G-ACACATC-TCGTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCA-CAT-ATAGTCGATGC
* * * * *
72111967 CATGTCCCAAACAT-GTCTTACATTGGCT-T-ACATCTCGAGGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATAT--A-GTCGATGC
* * * *
72112013 CATGTCCCAGACAT-TTCTTACACTAGCTCTTGTCTCA-AT-GCCAATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTC---TCACATATAGTCGATGC
* * *
72112060 CATGTCCTAGACATGGTCTTACACTGGCTCT-A-ATAATATGGCTGATG-
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-ATA-GTC-GATGC
72112107 CATGTCCCAGACAT-GTCTTACACTAGC
1 CATGTCCCAGACATGGTCTTACACTAGC
72112134 ACATAAATAA
Statistics
Matches: 244, Mismatches: 37, Indels: 59
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.01
44 11 0.05
45 19 0.08
46 61 0.25
47 59 0.24
48 49 0.20
49 4 0.02
50 36 0.15
51 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATAGTCGATGC
Found at i:72111938 original size:48 final size:48
Alignment explanation
Indices: 72111763--72111988 Score: 166
Period size: 48 Copynumber: 4.8 Consensus size: 48
72111753 AAACATAGGG
* * * ** *
72111763 TATA-GTGCCAATGTCATGTCCCATACATGGTCTTACACTGGCTCATC
1 TATACGTGCCGATGCCATGTCCCAAACATGGTCTTACACTAACACATC
* * * * * *
72111810 CATCAAGT--CGATGCCATGTGCCAGACATGGTCTTACACTAGCTC-TCAC
1 TAT-ACGTGCCGATGCCATGTCCCAAACATGGTCTTACACTAACACAT--C
** * *
72111858 ATATTTGTGTCGATGCCATGTCCCAGAA-ATGGTCTTACACTAACACCTC
1 -TATACGTGCCGATGCCATGTCCCA-AACATGGTCTTACACTAACACATC
* *
72111907 TATACGTGCCAATGCCATGTCCCAAACATGGTCTTACACTGACACATC
1 TATACGTGCCGATGCCATGTCCCAAACATGGTCTTACACTAACACATC
72111955 --T-CGTAGCCGATG-CATGTCCCAAACAT-GTCTTACA
1 TATACGT-GCCGATGCCATGTCCCAAACATGGTCTTACA
72111989 TTGGCTTACA
Statistics
Matches: 148, Mismatches: 20, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
44 8 0.05
45 17 0.11
46 8 0.05
47 35 0.24
48 43 0.29
49 5 0.03
50 30 0.20
51 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
TATACGTGCCGATGCCATGTCCCAAACATGGTCTTACACTAACACATC
Found at i:72117632 original size:34 final size:34
Alignment explanation
Indices: 72117594--72117661 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
72117584 CTTTTTTTTC
72117594 TTTCCCTATCTTTTACCTCAAATAGGGGTGAATG
1 TTTCCCTATCTTTTACCTCAAATAGGGGTGAATG
*
72117628 TTTCCCTATCTTTTACCTCAAATTGGGGTGAATG
1 TTTCCCTATCTTTTACCTCAAATAGGGGTGAATG
72117662 AAAACTATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.40
Consensus pattern (34 bp):
TTTCCCTATCTTTTACCTCAAATAGGGGTGAATG
Found at i:72118150 original size:26 final size:26
Alignment explanation
Indices: 72118121--72118174 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
72118111 ATCATCTAGT
*
72118121 ATAGTAATTTGTGGTCATGCTCTAAC
1 ATAGTAATGTGTGGTCATGCTCTAAC
*
72118147 ATAGTAATGTGTGGTCATGCTTTAAC
1 ATAGTAATGTGTGGTCATGCTCTAAC
72118173 AT
1 AT
72118175 TCTCCTTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (26 bp):
ATAGTAATGTGTGGTCATGCTCTAAC
Found at i:72118896 original size:26 final size:26
Alignment explanation
Indices: 72118860--72118967 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
72118850 TGAAATTCCC
*
72118860 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
*
72118886 ATCATGGAACATTTACCAAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72118912 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72118938 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72118964 ATCA
1 ATCA
72118968 ATTTGTATGA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72135537 original size:47 final size:47
Alignment explanation
Indices: 72135466--72136385 Score: 1759
Period size: 47 Copynumber: 19.6 Consensus size: 47
72135456 CCCTTCGGGA
* * * *
72135466 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
72135513 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72135560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135607 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135654 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135701 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135748 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135795 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135842 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135889 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135936 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72135983 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72136030 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72136077 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72136124 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72136171 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72136218 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72136265 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72136312 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72136359 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
72136386 TATTCAAATA
Statistics
Matches: 861, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 861 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:72135544 original size:25 final size:25
Alignment explanation
Indices: 72135516--72135594 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
72135506 ACTCGGCCCT
72135516 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
72135541 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
72135563 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
72135588 ATCACAT
1 ATCACAT
72135595 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:72139598 original size:27 final size:27
Alignment explanation
Indices: 72139550--72139762 Score: 224
Period size: 27 Copynumber: 7.9 Consensus size: 27
72139540 GCGAGGCTGC
* *
72139550 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
72139577 CAAATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
72139603 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
72139630 CAGATAATTGTGGCATAGCCACTAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
72139657 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
72139684 CAGATAATTGTGGCATAGCCACTAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
72139711 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
72139738 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
72139763 GACGCTTCCT
Statistics
Matches: 157, Mismatches: 17, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
26 11 0.07
27 139 0.89
28 7 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:72139640 original size:54 final size:54
Alignment explanation
Indices: 72139568--72139765 Score: 335
Period size: 54 Copynumber: 3.7 Consensus size: 54
72139558 GTGACGAAGT
* * *
72139568 CACCAGATACAAAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
72139622 CACCAGATCAGATAATTGTGGCATAGCCACTAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
72139676 CACCAGATCAGATAATTGTGGCATAGCCACTAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
72139730 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
72139766 GCTTCCTCCA
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
53 4 0.03
54 134 0.97
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:72141360 original size:26 final size:26
Alignment explanation
Indices: 72141330--72141749 Score: 723
Period size: 26 Copynumber: 16.2 Consensus size: 26
72141320 TGAAATTCCC
72141330 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141356 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141382 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72141408 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141434 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141460 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141486 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141512 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141538 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141564 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141590 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141616 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141642 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141668 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72141694 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72141720 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72141746 ATCA
1 ATCA
72141750 ATTTGTATGA
Statistics
Matches: 368, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 368 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72141402 original size:52 final size:52
Alignment explanation
Indices: 72141330--72141749 Score: 813
Period size: 52 Copynumber: 8.1 Consensus size: 52
72141320 TGAAATTCCC
*
72141330 ATCATGGAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
*
72141382 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
72141434 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
72141486 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
72141538 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
72141590 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
72141642 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
*
72141694 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
72141746 ATCA
1 ATCA
72141750 ATTTGTATGA
Statistics
Matches: 364, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 364 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (52 bp):
ATCATGAAACATTTACCTAACCCATTATCATGGAATATTTACCTAACCCATT
Found at i:72144987 original size:40 final size:40
Alignment explanation
Indices: 72144922--72144998 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
72144912 ACTATGTTTG
*
72144922 GCACTTAGTGTGCGATTCGAGATAGCTTAGGTTATATAAA
1 GCACTTAGTGTGCGATTCGAGATAGCTTAGGCTATATAAA
* *
72144962 GCACTTAGTGTGCGAATTGGA-ATAGCTTCGGCTATAT
1 GCACTTAGTGTGCG-ATTCGAGATAGCTTAGGCTATAT
72144999 GTGGCACTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 28 0.85
41 5 0.15
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.32
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAGCTTAGGCTATATAAA
Found at i:72145006 original size:40 final size:40
Alignment explanation
Indices: 72144920--72145012 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
72144910 CGACTATGTT
*
72144920 TGGCACTTAGTGTGCGATTCGAGATAGCTTAGGTTATATA
1 TGGCACTTAGTGTGCGATTCGAGATAGCTTAGGCTATATA
** * * *
72144960 AAGCACTTAGTGTGCGAATTGGA-ATAGCTTCGGCTATATG
1 TGGCACTTAGTGTGCG-ATTCGAGATAGCTTAGGCTATATA
*
72145000 TGGCACTAAGTGT
1 TGGCACTTAGTGT
72145013 ATGATATTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
40 38 0.88
41 5 0.12
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGAGATAGCTTAGGCTATATA
Found at i:72146760 original size:43 final size:42
Alignment explanation
Indices: 72146712--72146867 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
72146702 TGTGAATACA
*
72146712 TGTAAGACCATGTCTGGGATATTGGCATTGTATTGAAATTTCG
1 TGTAAGACCATGTCTGGGATATTGGCATCGTATTG-AATTTCG
* *
72146755 TGTAAGACCATGTCTGGGACATTGGCATCGTTAATCG-ATTTCG
1 TGTAAGACCATGTCTGGGATATTGGCATCG-T-ATTGAATTTCG
* * ** ** *
72146798 TGTAAGACCCTGTCTGAGATGGTGGCATCG-ATATGTAATAACA
1 TGTAAGACCATGTCTGGGATATTGGCATCGTAT-TG-AATTTCG
*
72146841 TGTAAGACCATATCTGGGATA-TGGCAT
1 TGTAAGACCATGTCTGGGATATTGGCAT
72146868 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 6 0.07
43 79 0.86
44 1 0.01
45 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGATATTGGCATCGTATTGAATTTCG
Found at i:72149315 original size:24 final size:24
Alignment explanation
Indices: 72149265--72149318 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
72149255 AATCGAATTT
*
72149265 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
72149289 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
72149313 GCACAC
1 GCACAC
72149319 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:72152515 original size:43 final size:42
Alignment explanation
Indices: 72152418--72152517 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 42
72152408 CCACATTTGA
* *
72152418 GACGTTGGCATTGTATTTGATTTCATGTAAAACCCTGTCTAG
1 GACGTTGGCATTGTATTTGATTACATGTAAAACCATGTCTAG
* * *
72152460 GACAG-TGGCATTGATATTTGATTACATGTTAGACCATGTCTGG
1 GAC-GTTGGCATTG-TATTTGATTACATGTAAAACCATGTCTAG
*
72152503 GACGTTGCCATTGTA
1 GACGTTGGCATTGTA
72152518 CGAGCTTTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
42 14 0.29
43 35 0.71
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (42 bp):
GACGTTGGCATTGTATTTGATTACATGTAAAACCATGTCTAG
Found at i:72154023 original size:30 final size:30
Alignment explanation
Indices: 72153989--72154053 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
72153979 CTAGCAGCCA
72153989 TGTGAGGCACACAGCCTGTTCACACGGGCG
1 TGTGAGGCACACAGCCTGTTCACACGGGCG
*
72154019 TGTGAGGCACACGGCCTGTTCACACGGGCG
1 TGTGAGGCACACAGCCTGTTCACACGGGCG
72154049 TGTGA
1 TGTGA
72154054 CCCTTACATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.18
Consensus pattern (30 bp):
TGTGAGGCACACAGCCTGTTCACACGGGCG
Found at i:72155450 original size:32 final size:32
Alignment explanation
Indices: 72155414--72155490 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
72155404 GCTAAAATTG
*
72155414 TAATCAATCTTTATTTCTTCAA-CGGTTTGTAT
1 TAATCAATCTTTATTTCTTCAAGC-ATTTGTAT
* *
72155446 TAATCAATCCTAATTTCTTCAAGCATTTGTAT
1 TAATCAATCTTTATTTCTTCAAGCATTTGTAT
*
72155478 TAATCAACCTTTA
1 TAATCAATCTTTA
72155491 AAAAATATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 37 0.97
33 1 0.03
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.45
Consensus pattern (32 bp):
TAATCAATCTTTATTTCTTCAAGCATTTGTAT
Found at i:72155896 original size:21 final size:23
Alignment explanation
Indices: 72155870--72155911 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
72155860 TCTCAAAAAA
72155870 TTTTGTGAG-TC-TTTTTTTAAT
1 TTTTGTGAGATCATTTTTTTAAT
*
72155891 TTTTGTGGGATCATTTTTTTA
1 TTTTGTGAGATCATTTTTTTA
72155912 TGGGATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 2 0.11
23 8 0.44
ACGTcount: A:0.14, C:0.05, G:0.17, T:0.64
Consensus pattern (23 bp):
TTTTGTGAGATCATTTTTTTAAT
Found at i:72157049 original size:25 final size:25
Alignment explanation
Indices: 72157011--72157152 Score: 99
Period size: 25 Copynumber: 5.7 Consensus size: 25
72157001 TAGGCTTTTT
72157011 AGATAATTCACCACAAGA-GCTTTAC
1 AGATAATTCACCACAA-ATGCTTTAC
**
72157036 AGATAATTTTCCACAAATGCTTTAC
1 AGATAATTCACCACAAATGCTTTAC
** * * *
72157061 AGATAGCTCGCCATATA-GCCTTTAC
1 AGATAATTCACCACAAATG-CTTTAC
* * * *
72157086 AGTTAACTCGCCACAAAGGCTTTAC
1 AGATAATTCACCACAAATGCTTTAC
* * *
72157111 AGATAACTCGCCACAAAGGCTTTAC
1 AGATAATTCACCACAAATGCTTTAC
* * *
72157136 AAATAATCCGCCACAAA
1 AGATAATTCACCACAAA
72157153 GGTTAGGTTT
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
24 2 0.02
25 95 0.97
26 1 0.01
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.25
Consensus pattern (25 bp):
AGATAATTCACCACAAATGCTTTAC
Found at i:72157065 original size:50 final size:50
Alignment explanation
Indices: 72156942--72157154 Score: 148
Period size: 50 Copynumber: 4.2 Consensus size: 50
72156932 TCCACATGAC
* * *
72156942 TCGCCACAAGGGCTTCT-CAGATAACTTTGCCACTAAG-GCTTTA-TGAATAAT
1 TCGCCACAAAGGCTT-TACAGATAAC-TCGCCAC-AAGAGCTTTACAG-ATAAT
* * ** ** * *
72156993 ACGTCACGTAGGCTTTTTAGATAATTCACCACAAGAGCTTTACAGATAAT
1 TCGCCACAAAGGCTTTACAGATAACTCGCCACAAGAGCTTTACAGATAAT
** * * * * * *
72157043 TTTCCACAAATGCTTTACAGATAGCTCGCCATATAG-CCTTTACAGTTAAC
1 TCGCCACAAAGGCTTTACAGATAACTCGCCACA-AGAGCTTTACAGATAAT
*
72157093 TCGCCACAAAGGCTTTACAGATAACTCGCCACAA-AGGCTTTACAAATAAT
1 TCGCCACAAAGGCTTTACAGATAACTCGCCACAAGA-GCTTTACAGATAAT
*
72157143 CCGCCACAAAGG
1 TCGCCACAAAGG
72157155 TTAGGTTTGG
Statistics
Matches: 120, Mismatches: 36, Indels: 13
0.71 0.21 0.08
Matches are distributed among these distances:
49 4 0.03
50 97 0.81
51 19 0.16
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (50 bp):
TCGCCACAAAGGCTTTACAGATAACTCGCCACAAGAGCTTTACAGATAAT
Found at i:72157148 original size:75 final size:75
Alignment explanation
Indices: 72156940--72157150 Score: 185
Period size: 75 Copynumber: 2.8 Consensus size: 75
72156930 TTTCCACATG
* * ** * * *
72156940 ACTCGCCACAAGGGCTTCT-CAGATAACTTTGCCACTAAGGCTTTATGAATAATACGTCACGTAG
1 ACTCGCCACAAAGGCTT-TACAGATAAC-TTGCCACAAAGGCTTTACAAATAATCCGCCACATAG
* **
72157004 GCTTTTTAGATA
64 CCTTTACAGATA
* * * * * * * *
72157016 ATTCACCAC-AAGAGCTTTACAGATAATTTTCCACAAATGCTTTACAGAT-AGCTCGCCATATAG
1 ACTCGCCACAAAG-GCTTTACAGATAACTTGCCACAAAGGCTTTACAAATAATC-CGCCACATAG
*
72157079 CCTTTACAGTTA
64 CCTTTACAGATA
*
72157091 ACTCGCCACAAAGGCTTTACAGATAACTCGCCACAAAGGCTTTACAAATAATCCGCCACA
1 ACTCGCCACAAAGGCTTTACAGATAACTTGCCACAAAGGCTTTACAAATAATCCGCCACA
72157151 AAGGTTAGGT
Statistics
Matches: 102, Mismatches: 28, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
74 1 0.01
75 78 0.76
76 23 0.23
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.27
Consensus pattern (75 bp):
ACTCGCCACAAAGGCTTTACAGATAACTTGCCACAAAGGCTTTACAAATAATCCGCCACATAGCC
TTTACAGATA
Found at i:72157153 original size:25 final size:25
Alignment explanation
Indices: 72157046--72157154 Score: 121
Period size: 25 Copynumber: 4.4 Consensus size: 25
72157036 AGATAATTTT
* * *
72157046 CCACAAATGCTTTACAGATAGCTCG
1 CCACAAAGGCTTTACAAATAACTCG
* * * **
72157071 CCATATAGCCTTTACAGTTAACTCG
1 CCACAAAGGCTTTACAAATAACTCG
*
72157096 CCACAAAGGCTTTACAGATAACTCG
1 CCACAAAGGCTTTACAAATAACTCG
72157121 CCACAAAGGCTTTACAAATAA-TCCG
1 CCACAAAGGCTTTACAAATAACT-CG
72157146 CCACAAAGG
1 CCACAAAGG
72157155 TTAGGTTTGG
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
24 1 0.01
25 71 0.99
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (25 bp):
CCACAAAGGCTTTACAAATAACTCG
Found at i:72157764 original size:4 final size:4
Alignment explanation
Indices: 72157755--72157816 Score: 108
Period size: 4 Copynumber: 15.8 Consensus size: 4
72157745 TTCATAGAAA
*
72157755 ACAT ACAT ACAT TCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
72157803 ACAT ACAT AC-T ACA
1 ACAT ACAT ACAT ACA
72157817 ACTCCTCAAG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
3 3 0.05
4 52 0.95
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:72158445 original size:22 final size:22
Alignment explanation
Indices: 72158418--72158459 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
72158408 TTAAAAGAAT
72158418 AAATTAAT-AATAGTTTTAAAAA
1 AAATT-ATGAATAGTTTTAAAAA
*
72158440 AAATTATGAATATTTTTAAA
1 AAATTATGAATAGTTTTAAA
72158460 TATTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (22 bp):
AAATTATGAATAGTTTTAAAAA
Found at i:72163923 original size:25 final size:26
Alignment explanation
Indices: 72163891--72163945 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
72163881 TTATTAAATT
*
72163891 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
72163916 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
72163941 A-ATAT
1 ATATAT
72163946 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:72164132 original size:44 final size:45
Alignment explanation
Indices: 72164083--72164177 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
72164073 TTACACCTCT
* *
72164083 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
72164127 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
72164172 ATTACA
1 ATTACA
72164178 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:72164177 original size:16 final size:16
Alignment explanation
Indices: 72164158--72164209 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
72164148 GATTTGCTAT
* *
72164158 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
72164174 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
72164190 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
72164206 TACA
1 TACA
72164210 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:72165538 original size:3 final size:3
Alignment explanation
Indices: 72165530--72165568 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
72165520 ACTCGCTATT
*
72165530 GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
72165569 AATCATGTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:72168934 original size:21 final size:22
Alignment explanation
Indices: 72168910--72168952 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
72168900 GATATAAATT
72168910 TAAAAAAACTTTAAAAA-TATA
1 TAAAAAAACTTTAAAAAGTATA
** *
72168931 TAAATTAATTTTAAAAAGTATA
1 TAAAAAAACTTTAAAAAGTATA
72168953 ATTTTTTGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
TAAAAAAACTTTAAAAAGTATA
Found at i:72169626 original size:29 final size:29
Alignment explanation
Indices: 72169573--72169628 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
72169563 AATCAAAGTT
*
72169573 ATAAAAATTATTAAATTTTTATAAAAAAC
1 ATAAAAATTATTAAATTTATATAAAAAAC
72169602 ATAAAAA-TATTTAAAATTTAT-TAAAAA
1 ATAAAAATTA-TT-AAATTTATATAAAAA
72169629 TTAGAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 2 0.08
29 15 0.62
30 7 0.29
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (29 bp):
ATAAAAATTATTAAATTTATATAAAAAAC
Found at i:72169841 original size:9 final size:9
Alignment explanation
Indices: 72169827--72169970 Score: 58
Period size: 9 Copynumber: 15.0 Consensus size: 9
72169817 CTTTTGTATG
72169827 ATAATTTTT
1 ATAATTTTT
72169836 ATAATTTTT
1 ATAATTTTT
*
72169845 TTACGATTTTT
1 ATA--ATTTTT
*
72169856 ATAAAATTTT
1 AT-AATTTTT
*
72169866 ACAATTTTTCTT
1 ATAA--TTT-TT
*
72169878 ACAATTTTTT
1 ATAA-TTTTT
*
72169888 ATATTTTTT
1 ATAATTTTT
*
72169897 CTAATTTTT
1 ATAATTTTT
*
72169906 A-ATTTTTTT
1 ATA-ATTTTT
**
72169915 ATTAAAATTT
1 A-TAATTTTT
*
72169925 ATTAA-TTTA
1 A-TAATTTTT
72169934 ATAATTTTT
1 ATAATTTTT
*
72169943 ATTATTTATT
1 ATAATTT-TT
*
72169953 ATTATTTTT
1 ATAATTTTT
*
72169962 ATTATTTTT
1 ATAATTTTT
72169971 TGTCACATGC
Statistics
Matches: 106, Mismatches: 18, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
8 4 0.04
9 54 0.51
10 27 0.25
11 14 0.13
12 7 0.07
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (9 bp):
ATAATTTTT
Done.