Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 217 of 276
Found at i:72169865 original size:20 final size:19
Alignment explanation
Indices: 72169829--72169874 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
72169819 TTTGTATGAT
**
72169829 AATTTTTATAATTTTTTTAC
1 AATTTTTATAA-AATTTTAC
*
72169849 GATTTTTATAAAATTTTAC
1 AATTTTTATAAAATTTTAC
72169868 AATTTTT
1 AATTTTT
72169875 CTTACAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
AATTTTTATAAAATTTTAC
Found at i:72169865 original size:31 final size:31
Alignment explanation
Indices: 72169829--72169905 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
72169819 TTTGTATGAT
*
72169829 AATTTTTATAATTTTT-TTACGATTTTTATAA
1 AATTTTTATAATTTTTCTTACAATTTTT-TAA
* *
72169860 AA-TTTTACAATTTTTCTTACAATTTTTTAT
1 AATTTTTATAATTTTTCTTACAATTTTTTAA
* *
72169890 ATTTTTTCTAATTTTT
1 AATTTTTATAATTTTT
72169906 AATTTTTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
30 15 0.39
31 23 0.61
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (31 bp):
AATTTTTATAATTTTTCTTACAATTTTTTAA
Found at i:72169970 original size:10 final size:10
Alignment explanation
Indices: 72169938--72169971 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
72169928 AATTTAATAA
72169938 TTTTTATTAT
1 TTTTTATTAT
*
72169948 TTATTATTA-
1 TTTTTATTAT
72169957 TTTTTATTAT
1 TTTTTATTAT
72169967 TTTTT
1 TTTTT
72169972 GTCACATGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTATTAT
Found at i:72176526 original size:49 final size:49
Alignment explanation
Indices: 72176469--72176669 Score: 164
Period size: 49 Copynumber: 4.2 Consensus size: 49
72176459 TCCTAGACAT
* *
72176469 GGTCTTACACTGGCTTTCATATAACGAGGTCGGTGCCATGTCCCAAACA
1 GGTCTTACACTGGCTCTCATATAACGAGGTCGATGCCATGTCCCAAACA
* * * * *
72176518 GGTCTTACACTGGCTCTCATCTATCGATGTCGATGCCATGTCCCGAATA
1 GGTCTTACACTGGCTCTCATATAACGAGGTCGATGCCATGTCCCAAACA
* * * * * * *
72176567 GGTCTTACACTGG----CACACAAC-AAGTTGAAGCCATGTCCCAGATA
1 GGTCTTACACTGGCTCTCATATAACGAGGTCGATGCCATGTCCCAAACA
* * * * *
72176611 GGTCTTACACTAGCT-TGTATATCACGAGGCCGATG-CATGTCCCAGACA
1 GGTCTTACACTGGCTCT-CATATAACGAGGTCGATGCCATGTCCCAAACA
*
72176659 TGTCTTACACT
1 GGTCTTACACT
72176670 AGCTTTCGTC
Statistics
Matches: 120, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
44 30 0.25
45 4 0.03
48 26 0.22
49 60 0.50
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (49 bp):
GGTCTTACACTGGCTCTCATATAACGAGGTCGATGCCATGTCCCAAACA
Found at i:72176664 original size:48 final size:47
Alignment explanation
Indices: 72176598--72176761 Score: 170
Period size: 48 Copynumber: 3.5 Consensus size: 47
72176588 AAGTTGAAGC
* *
72176598 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCACGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCACGAGGCCGATG
* * * *
72176646 CATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCA--ATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTT-ATATCACGAGGCCGATG
* * * * * * *
72176692 CATGTCACAGACATGTCTTACACTGGCTTAAATATCTCGAGACCTACG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCACGAGGCCGATG
72176740 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
72176762 TTGGCTCTCA
Statistics
Matches: 94, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
46 37 0.39
47 1 0.01
48 56 0.60
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCACGAGGCCGATG
Found at i:72176786 original size:94 final size:93
Alignment explanation
Indices: 72176598--72176811 Score: 225
Period size: 94 Copynumber: 2.3 Consensus size: 93
72176588 AAGTTGAAGC
* * ** * *
72176598 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCACGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACGAGACCGACGCATGTCCCAGACATGTC
* * *
72176663 TTACACTAGCTTTCGTCTCAATGTCGATG
66 TTACACTAGCTCTCATCT-AATGGCGATG
* * * *
72176692 CATGTCACAGACATGTCTTACACTGGCTTAAATATCTCGAGACCTACGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACGAGACCGACGCATGTCCCAGACATGTC
* * *
72176757 TTACATTGGCTCTCATGCT-TTGGCTGATG
66 TTACACTAGCTCTCAT-CTAATGGC-GATG
* *
72176786 CAT-TCCCAAACATGTTTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
72176812 ACACATATCA
Statistics
Matches: 98, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
93 22 0.22
94 74 0.76
95 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACGAGACCGACGCATGTCCCAGACATGTC
TTACACTAGCTCTCATCTAATGGCGATG
Found at i:72180290 original size:42 final size:42
Alignment explanation
Indices: 72180244--72180355 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 42
72180234 AGAAGCACAA
** ** *
72180244 TCACTTAAGCTCGCGTGGGGAGCTTCGCTAATACATAGCTTG
1 TCACTTAAGCTCATGTGGGGAGCTTCAATAATACACAGCTTG
* *
72180286 TCACTTAAGCTCTTGTGGGGGAGATTCAATAATACACAGCTTG
1 TCACTTAAGCTCATGT-GGGGAGCTTCAATAATACACAGCTTG
72180329 TCACTTAAGCTCATGTGGGGAGCTTCA
1 TCACTTAAGCTCATGTGGGGAGCTTCA
72180356 CTGATATATA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 24 0.39
43 37 0.61
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (42 bp):
TCACTTAAGCTCATGTGGGGAGCTTCAATAATACACAGCTTG
Found at i:72186454 original size:145 final size:145
Alignment explanation
Indices: 72186191--72186480 Score: 562
Period size: 145 Copynumber: 2.0 Consensus size: 145
72186181 CATGGGAAAA
*
72186191 GGAAAGGAGAAAGGAGAAAAAACCTCAGAAGCAGAAGAAGTCATTGTATTTTATCCCCTTTTAAA
1 GGAAAGGAGAAAGGAGAAAAAACCTCAGAAGCAGAAGAAGTCATTGTATTTTATCCCCTTTCAAA
*
72186256 AAATAGGATATTCGATATTCTTTAAATGAGATTTCAAAATCAGATCTTATGAACAAAGGAAAAAG
66 AAATAGGATATTCGATATTCTTTAAATGAGATTTCAAAATCAGATCTTATGAACAAAGGAAAAAA
72186321 TGCTATAAGAATTTT
131 TGCTATAAGAATTTT
72186336 GGAAAGGAGAAAGGAGAAAAAACCTCAGAAGCAGAAGAAGTCATTGTATTTTATCCCCTTTCAAA
1 GGAAAGGAGAAAGGAGAAAAAACCTCAGAAGCAGAAGAAGTCATTGTATTTTATCCCCTTTCAAA
72186401 AAATAGGATATTCGATATTCTTTAAATGAGATTTCAAAATCAGATCTTATGAACAAAGGAAAAAA
66 AAATAGGATATTCGATATTCTTTAAATGAGATTTCAAAATCAGATCTTATGAACAAAGGAAAAAA
72186466 TGCTATAAGAATTTT
131 TGCTATAAGAATTTT
72186481 ACTTCTATAC
Statistics
Matches: 143, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 143 1.00
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (145 bp):
GGAAAGGAGAAAGGAGAAAAAACCTCAGAAGCAGAAGAAGTCATTGTATTTTATCCCCTTTCAAA
AAATAGGATATTCGATATTCTTTAAATGAGATTTCAAAATCAGATCTTATGAACAAAGGAAAAAA
TGCTATAAGAATTTT
Found at i:72186945 original size:131 final size:131
Alignment explanation
Indices: 72186711--72186971 Score: 362
Period size: 131 Copynumber: 2.0 Consensus size: 131
72186701 ATAGAGGTTT
* * * *
72186711 ATATGTTGCCATGTTGAAAGGAAACTTGATTGCTTGATTTGGCGAGGCTTAGGGATAAGTCTCTA
1 ATATGTCGCCATGCTGAAAGGAAACTTGATTGCTTGATTTGGCGAAGCTCAGGGATAAGTCTCTA
* * *
72186776 TTTGTAAAATATGCTATAAGTCAATGAGGTCCTCAATCTTGGTGAAGTATTAGCATTGGCAAGCT
66 TTTCTAAAATATACTATAAGCCAATGAGGTCCTCAATCTTGGTGAAGTATTAGCATTGGCAAGCT
72186841 C
131 C
* * *
72186842 ATATGTCGCCATGCTGAAAGGAAACTTGATTGCTTGATTTGGTGAAGCTCGGGGATAAG-CTTTT
1 ATATGTCGCCATGCTGAAAGGAAACTTGATTGCTTGATTTGGCGAAGCTCAGGGATAAGTC-TCT
* * * * * *
72186906 ATTTCTAGAGTATATTATAAGCCAGTGAGGTCCTTAATCTTGGTGAAGTATTAGCATTGGCGAGC
65 ATTTCTAAAATATACTATAAGCCAATGAGGTCCTCAATCTTGGTGAAGTATTAGCATTGGCAAGC
72186971 T
130 T
72186972 AAAACTGGGT
Statistics
Matches: 113, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
130 1 0.01
131 112 0.99
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (131 bp):
ATATGTCGCCATGCTGAAAGGAAACTTGATTGCTTGATTTGGCGAAGCTCAGGGATAAGTCTCTA
TTTCTAAAATATACTATAAGCCAATGAGGTCCTCAATCTTGGTGAAGTATTAGCATTGGCAAGCT
C
Found at i:72188318 original size:6 final size:6
Alignment explanation
Indices: 72188307--72188368 Score: 72
Period size: 6 Copynumber: 10.3 Consensus size: 6
72188297 ATGTTAGTGA
* ** *
72188307 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT AAAAAAT ATTTAT ATAAAA
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT -ATAAAT ATAAAT ATAAAT
72188356 ATAAA- ATAAAT AT
1 ATAAAT ATAAAT AT
72188369 TTATATTTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
5 5 0.11
6 37 0.79
7 5 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATAAAT
Found at i:72188351 original size:25 final size:23
Alignment explanation
Indices: 72188323--72188374 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
72188313 ATAAATATAA
*
72188323 ATATAAATATAAATAAAAAATATTT
1 ATATAAAAAT-AA-AAAAAATATTT
*
72188348 ATATAAAAATAAAATAAATATTT
1 ATATAAAAATAAAAAAAATATTT
72188371 ATAT
1 ATAT
72188375 TTAAAATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 14 0.56
24 2 0.08
25 9 0.36
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
ATATAAAAATAAAAAAAATATTT
Found at i:72188359 original size:21 final size:23
Alignment explanation
Indices: 72188306--72188374 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
72188296 TATGTTAGTG
**
72188306 AATAAATATAAATATAAATATAAA
1 AATAAA-ATAAATATTTATATAAA
* *
72188330 TATAAATAAAAAATATTTATATAAA
1 AAT-AA-AATAAATATTTATATAAA
72188355 AATAAAATAAATATTTATAT
1 AATAAAATAAATATTTATAT
72188375 TTAAAATTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
23 14 0.38
24 4 0.11
25 18 0.49
26 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
AATAAAATAAATATTTATATAAA
Found at i:72190558 original size:48 final size:48
Alignment explanation
Indices: 72190485--72190595 Score: 134
Period size: 48 Copynumber: 2.3 Consensus size: 48
72190475 AAAAGTATCA
* * ***
72190485 ATGCCATGTCCCCGACATGGCCTTACA-TGAACCCACATATCATCGTTG
1 ATGCCATGTCCCAGACATGGCCTTACACTG-ACACACATATCATCACCG
* * *
72190533 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGCCTTACACTGACACACATATCATCACCG
72190581 ATGCCATGTCCCAGA
1 ATGCCATGTCCCAGA
72190596 TAGGCACATA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 51 0.96
49 2 0.04
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGCCTTACACTGACACACATATCATCACCG
Found at i:72196193 original size:46 final size:46
Alignment explanation
Indices: 72196117--72196209 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
72196107 AAGTGACATG
* * *
72196117 TCACAAGGATGTTTGGGCATCTGAAATCGTTGAGTTGTGTCTGAGT
1 TCACAAGGATGTTTGGGCATCCGAAATCGTTGAGTTGAGTCCGAGT
* *
72196163 TCACTAGGATGTTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGT
1 TCACAAGGATGTTTGGGCATCCGAAATCGTTGAGTTGAGTCCGAGT
72196209 T
1 T
72196210 TGAGAGATGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.33
Consensus pattern (46 bp):
TCACAAGGATGTTTGGGCATCCGAAATCGTTGAGTTGAGTCCGAGT
Found at i:72201219 original size:47 final size:47
Alignment explanation
Indices: 72201158--72201330 Score: 235
Period size: 47 Copynumber: 3.7 Consensus size: 47
72201148 AGGATGTTTG
72201158 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
72201205 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTC-ACTAGGATGT--TTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGA-GA-GATGTAACTA
72201251 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
72201298 GGCATCCGAGCCCGTTGAGTTGAGTCTGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
72201331 ACTTATGGAT
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
45 5 0.05
46 34 0.31
47 64 0.59
48 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:72201302 original size:93 final size:93
Alignment explanation
Indices: 72201143--72201333 Score: 373
Period size: 93 Copynumber: 2.1 Consensus size: 93
72201133 AAGTGACATG
72201143 TCACTAGGATGTTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
1 TCACTAGGATGTTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
*
72201208 ATCCGAGCTCGTTGAGTTGAGTCTGAGT
66 ATCCGAGCCCGTTGAGTTGAGTCTGAGT
72201236 TCACTAGGATGTTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
1 TCACTAGGATGTTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
72201301 ATCCGAGCCCGTTGAGTTGAGTCTGAGT
66 ATCCGAGCCCGTTGAGTTGAGTCTGAGT
72201329 TCACT
1 TCACT
72201334 TATGGATGCA
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 97 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
TCACTAGGATGTTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
ATCCGAGCCCGTTGAGTTGAGTCTGAGT
Found at i:72201358 original size:93 final size:92
Alignment explanation
Indices: 72201163--72201376 Score: 313
Period size: 93 Copynumber: 2.3 Consensus size: 92
72201153 GTTTGGGCAT
*
72201163 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCCCGTTGAGTTGA
*****
72201228 GTCTGAGTTCACTAGGATGTTTGGGCA
66 GTCTGAGTTCACTAGGATGCAAACGCA
72201255 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCCCGTTGAGTTG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCCCGTTGAGTTG
72201320 AGTCTGAGTTCACTTATGGATGCAAACGC-
65 AGTCTGAGTTCAC-TA-GGATGCAAACGCA
* * *
72201349 CTGAGCTCGTTGAGTTGAGTTCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
72201377 ACTTATGGAC
Statistics
Matches: 110, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
93 101 0.92
94 2 0.02
95 7 0.06
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (92 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCCCGTTGAGTTGA
GTCTGAGTTCACTAGGATGCAAACGCA
Found at i:72207732 original size:16 final size:16
Alignment explanation
Indices: 72207707--72207744 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
72207697 TATGTACATA
72207707 AAACTC-ATAAGTAAT
1 AAACTCGATAAGTAAT
*
72207722 AAACTCGATAAGTGAT
1 AAACTCGATAAGTAAT
*
72207738 GAACTCG
1 AAACTCG
72207745 TGGTAATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.24
Consensus pattern (16 bp):
AAACTCGATAAGTAAT
Found at i:72211290 original size:46 final size:46
Alignment explanation
Indices: 72211209--72211419 Score: 153
Period size: 46 Copynumber: 4.5 Consensus size: 46
72211199 GTGTCGATAC
72211209 CATGTCCCAGACATGGTCTTACACTGACTATCATCTC-ATAGCCAAAG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGA-AGCCAAAG
* * * * *
72211256 CATGTCCCAAACATGTCTTACACTGGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAAGCCAAAG
* * * *
72211302 CATGTCCCAGACATGTCTTACACT-AGC-ACTCGTC-CCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTCGAA-GCCAAAG
* * * ** ** *
72211348 CCATGTACCAGACATGGTCTTACACTGGCTTTCATAACGTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGAAGCCAAAG
*
72211396 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
72211420 AGCTCACACA
Statistics
Matches: 132, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
45 3 0.02
46 68 0.52
47 40 0.30
48 20 0.15
49 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCGAAGCCAAAG
Found at i:72216352 original size:84 final size:84
Alignment explanation
Indices: 72216193--72216486 Score: 380
Period size: 84 Copynumber: 3.5 Consensus size: 84
72216183 AATCATTTAC
* * * * *
72216193 GTTG-ACAACAGGATTAAATCCCAAAA-ACAAATTATTTAA--TTAAATCTTATTTGGAAACAAA
1 GTTGAACAACAGGAATAAATCCCAAAATA-GAATTATTCAATTTTAATTCTCATTTGGAAACAAA
* *
72216254 GTCAAAATTGAATAAAATCT
65 ATCAAAATAGAATAAAATCT
* * *
72216274 GTTAAACGACAGGAATAAATCCCAAAATAGAATTATTCAATTTTAATTCTCCTTTGGAAACAAAA
1 GTTGAACAACAGGAATAAATCCCAAAATAGAATTATTCAATTTTAATTCTCATTTGGAAACAAAA
*
72216339 TCAAAATGGAATAAAATCT
66 TCAAAATAGAATAAAATCT
* *
72216358 GTTGAACTACAGGAATAAATCCCAAAATAGAATTATTCAATTTTAATTCTCATTTGGAAATAAAA
1 GTTGAACAACAGGAATAAATCCCAAAATAGAATTATTCAATTTTAATTCTCATTTGGAAACAAAA
72216423 TCAAAATAGAATAAAATCT
66 TCAAAATAGAATAAAATCT
* * ** **
72216442 ATTGGACAACAAAAATAAATCTTAAAATAGAATTATTCAATTTTA
1 GTTGAACAACAGGAATAAATCCCAAAATAGAATTATTCAATTTTA
72216487 TTTTTTATTC
Statistics
Matches: 187, Mismatches: 22, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
81 3 0.02
82 29 0.16
83 1 0.01
84 154 0.82
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (84 bp):
GTTGAACAACAGGAATAAATCCCAAAATAGAATTATTCAATTTTAATTCTCATTTGGAAACAAAA
TCAAAATAGAATAAAATCT
Found at i:72216652 original size:32 final size:32
Alignment explanation
Indices: 72216612--72216679 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
72216602 GTTAGCGAAC
* *
72216612 AAATATAAATATAAATAAACATATATTTATATAA
1 AAATA-AAATA-AAATAAAAATATATATATATAA
*
72216646 AAATAAAATAAAATAAAAATATATATATTTAA
1 AAATAAAATAAAATAAAAATATATATATATAA
72216678 AA
1 AA
72216680 TATCATATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 21 0.68
33 5 0.16
34 5 0.16
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (32 bp):
AAATAAAATAAAATAAAAATATATATATATAA
Found at i:72218423 original size:48 final size:48
Alignment explanation
Indices: 72218348--72218572 Score: 197
Period size: 48 Copynumber: 4.6 Consensus size: 48
72218338 TATGTGTGCT
*
72218348 AGTGTAAGACCATGTCTGGGACGTGGCATCAGCCA-CATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCACCATTATGAGAGCC
* * * * *
72218396 AGTGTAAGACCATGTCTAGGACATGGCATCGGCC-TCAATATGTGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCACCATTATGAGAGCC
* * * *** * *
72218444 AGTGTAAGACCATGT-TCAGAACATGGCATCGGCATTGTTAT-ATGTGTC
1 AGTGTAAGACCATGTCT-GGGACATGGCATCGCCACCATTATGA-GAGCC
* * * *
72218492 AGTGTAAGACCATATCTGGGACATGGCATCGGCACCGATGTTTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCACC-AT-TATGAGAGCC
*
72218542 AGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
72218573 ACATTTTACC
Statistics
Matches: 142, Mismatches: 27, Indels: 14
0.78 0.15 0.08
Matches are distributed among these distances:
47 3 0.02
48 103 0.73
49 2 0.01
50 33 0.23
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCCACCATTATGAGAGCC
Found at i:72218501 original size:96 final size:98
Alignment explanation
Indices: 72218395--72218577 Score: 255
Period size: 98 Copynumber: 1.9 Consensus size: 98
72218385 TTATGAGAGC
* *
72218395 CAGTGTAAGACCATGTCTAGGACATGGCATCGGC-CTC-A-ATATGTGAGCTAGTGTAAGACCAT
1 CAGTGTAAGACCATATCTAGGACATGGCATCGGCAC-CGATATATGAGAGCTAGTGTAAGACCAT
* *
72218457 GTTCAGAACATGGCATCGGCATTGTTATATGTGT
65 GTCCAGAACATGGCATCGACATTGTTATATGTGT
* * *
72218491 CAGTGTAAGACCATATCTGGGACATGGCATCGGCACCGATGTTTGAGAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATATCTAGGACATGGCATCGGCACCGATATATGAGAGCTAGTGTAAGACCATG
* *
72218556 TCCGGGACATGGCATCGACATT
66 TCCAGAACATGGCATCGACATT
72218578 TTACCTTTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
96 33 0.44
97 2 0.03
98 40 0.53
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (98 bp):
CAGTGTAAGACCATATCTAGGACATGGCATCGGCACCGATATATGAGAGCTAGTGTAAGACCATG
TCCAGAACATGGCATCGACATTGTTATATGTGT
Found at i:72218570 original size:98 final size:96
Alignment explanation
Indices: 72218345--72218577 Score: 256
Period size: 96 Copynumber: 2.4 Consensus size: 96
72218335 TGATATGTGT
* * * *
72218345 GCTAGTGTAAGACCATGTCTGGGACGTGGCATCAGCCA-CATTATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCCGGGACATGGCATC-GACATTATTATGAGAGCCAGTGTAAGACCAT
* *
72218409 GTCTAGGACATGGCATCGGCCTCAATATGTGA
65 ATCTAGGACATGGCATCGGCCTCAATATGAGA
* * * * * * *
72218441 GCTAGTGTAAGACCATGTTCAGAACATGGCATCGGCATTGTTAT-ATGTGTCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCCGGGACATGGCATCGACATTATTATGA-GAGCCAGTGTAAGACCAT
* * *
72218505 ATCTGGGACATGGCATCGGCAC-CGATGTTTGAGA
65 ATCTAGGACATGGCATCGGC-CTC-A-ATATGAGA
72218539 GCTAGTGTAAGACCATGTCCGGGACATGGCATCGACATT
1 GCTAGTGTAAGACCATGTCCGGGACATGGCATCGACATT
72218578 TTACCTTTTT
Statistics
Matches: 113, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
95 4 0.04
96 67 0.59
97 2 0.02
98 40 0.35
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCCGGGACATGGCATCGACATTATTATGAGAGCCAGTGTAAGACCATA
TCTAGGACATGGCATCGGCCTCAATATGAGA
Found at i:72222207 original size:15 final size:15
Alignment explanation
Indices: 72222155--72222222 Score: 50
Period size: 15 Copynumber: 4.4 Consensus size: 15
72222145 TACGGTATCG
72222155 CATCTTGGATTTCTT
1 CATCTTGGATTTCTT
* * *
72222170 TATTTTGGAATTT-TC
1 CATCTTGG-ATTTCTT
72222185 CAAT-TTGGATTTCTT
1 C-ATCTTGGATTTCTT
*
72222200 CATCTTGGTTTTCATGT
1 CATCTTGGATTTC-T-T
72222217 CATCTT
1 CATCTT
72222223 TATTTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
14 6 0.15
15 21 0.51
16 7 0.17
17 7 0.17
ACGTcount: A:0.16, C:0.16, G:0.13, T:0.54
Consensus pattern (15 bp):
CATCTTGGATTTCTT
Found at i:72224676 original size:31 final size:31
Alignment explanation
Indices: 72224638--72224699 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
72224628 GTACGTGATG
72224638 GTGTTATGCGTCACGAAATTATATTGTAAGC
1 GTGTTATGCGTCACGAAATTATATTGTAAGC
72224669 GTGTTATGCGTCACGAAATTATATTGTAAGC
1 GTGTTATGCGTCACGAAATTATATTGTAAGC
72224700 TATGTATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (31 bp):
GTGTTATGCGTCACGAAATTATATTGTAAGC
Found at i:72224944 original size:48 final size:48
Alignment explanation
Indices: 72224873--72225155 Score: 300
Period size: 48 Copynumber: 5.9 Consensus size: 48
72224863 AAGACATTTG
*
72224873 GTTGATATGTGTGCTCGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
* *
72224921 GTTGATATGTGTGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGT
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
*
72224969 GTTGATATGTGTGCTAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
*** * * * *
72225017 -CACATTATGAGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGC
1 GTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
* ** * * * * * * *
72225065 CTCAATATGCGAGCCAGTGTAAGACTAT-TTTGGAACATGGCATCAGC
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
* * * * * *
72225112 ATTGTTTTATGTGTTAGTGTAAGACCATGTTTGGGACATGGCAT
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
72225156 TGGCACCGAT
Statistics
Matches: 198, Mismatches: 34, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
47 33 0.17
48 164 0.83
49 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (48 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
Found at i:72226526 original size:48 final size:48
Alignment explanation
Indices: 72226464--72226745 Score: 333
Period size: 48 Copynumber: 5.9 Consensus size: 48
72226454 AATGTGCCTG
* * * * *
72226464 TGTAAAACCATGTCTGGGACACGGCATCAGTGATGATATATGTGCATA
1 TGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTGTGCATA
* * *
72226512 TGTAAGACCATGTCTAGGACATGGCATCAGTGGTGATATGTGTGCCA-G
1 TGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTGTG-CATA
* * * *
72226560 TGTAAGACCATGTTTGGGACATGGCATC-GATGATGATATGTGTGCCA-G
1 TGTAAGACCATGTCTAGGACATGGCATCAG-CGATGATATGTGTG-CATA
72226608 TGTAAGACCATGTCT-GAGACATGGCATCAGCGATGATATGTGTGC-TA
1 TGTAAGACCATGTCTAG-GACATGGCATCAGCGATGATATGTGTGCATA
* *
72226655 GTGTAAGATCATGTCTAGGACATGACATCAGCGATGATATGTGTGC-TA
1 -TGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTGTGCATA
*
72226703 GTGTAAGACCATGTCTAGGACATGACATCAGCGATGATATGTG
1 -TGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTG
72226746 GATTCATGTG
Statistics
Matches: 212, Mismatches: 15, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
47 3 0.01
48 205 0.97
49 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTGTGCATA
Found at i:72226617 original size:96 final size:96
Alignment explanation
Indices: 72226456--72226745 Score: 397
Period size: 96 Copynumber: 3.0 Consensus size: 96
72226446 CCGTGCTTAA
* * * * *
72226456 TGTGCCTGTGTAAAACCATGTCTGGGACACGGCATCAGTGATGATATATGTG-CATATGTAAGAC
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATGTGTGCCA-GTGTAAGAC
* *
72226520 CATGTCTAGGACATGGCATCAGTGGTGATATG
65 CATGTCTAGGACATGGCATCAGCGATGATATG
*
72226552 TGTGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GATGATGATATGTGTGCCAGTGTAAGAC
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-TGATGATATGTGTGCCAGTGTAAGAC
72226616 CATGTCT-GAGACATGGCATCAGCGATGATATG
65 CATGTCTAG-GACATGGCATCAGCGATGATATG
* * * * * *
72226648 TGTGCTAGTGTAAGATCATGTCTAGGACATGACATCAGCGATGATATGTGTGCTAGTGTAAGACC
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATGTGTGCCAGTGTAAGACC
*
72226713 ATGTCTAGGACATGACATCAGCGATGATATG
66 ATGTCTAGGACATGGCATCAGCGATGATATG
72226744 TG
1 TG
72226746 GATTCATGTG
Statistics
Matches: 173, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
95 2 0.01
96 167 0.97
97 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (96 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATGTGTGCCAGTGTAAGACC
ATGTCTAGGACATGGCATCAGCGATGATATG
Found at i:72226760 original size:96 final size:95
Alignment explanation
Indices: 72226455--72226778 Score: 388
Period size: 96 Copynumber: 3.4 Consensus size: 95
72226445 ACCGTGCTTA
* * * * *
72226455 ATGTG-CCTGTGTAAAACCATGTCTGGGACACGGCATCAGTGATGATATATGTGCATA-TGTAAG
1 ATGTGTCCAGTGTAAGATCATGTCTGGGACATGGCATCAGTGATGATATGTGTGC-TAGTGTAAG
* *
72226518 ACCATGTCTAGGACATGGCATCAGTGGTGAT
65 ACCATGTCTAGGACATGGCATCAGCGATGAT
* * *
72226549 ATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GATGATGATATGTGTGCCAGTGTAA
1 ATGTGT-CCAGTGTAAGATCATGTCTGGGACATGGCATCAG-TGATGATATGTGTGCTAGTGTAA
72226613 GACCATGTCT-GAGACATGGCATCAGCGATGAT
64 GACCATGTCTAG-GACATGGCATCAGCGATGAT
* * * *
72226645 ATGTGTGCTAGTGTAAGATCATGTCTAGGACATGACATCAGCGATGATATGTGTGCTAGTGTAAG
1 ATGTGT-CCAGTGTAAGATCATGTCTGGGACATGGCATCAGTGATGATATGTGTGCTAGTGTAAG
*
72226710 ACCATGTCTAGGACATGACATCAGCGATGAT
65 ACCATGTCTAGGACATGGCATCAGCGATGAT
* * *
72226741 ATGTGGATTCA-TGTGAGATCATGTCGGGGACATGGCAT
1 ATGT-G-TCCAGTGTAAGATCATGTCTGGGACATGGCAT
72226779 TGGTACTTTA
Statistics
Matches: 199, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
94 5 0.03
95 3 0.02
96 186 0.93
97 4 0.02
98 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (95 bp):
ATGTGTCCAGTGTAAGATCATGTCTGGGACATGGCATCAGTGATGATATGTGTGCTAGTGTAAGA
CCATGTCTAGGACATGGCATCAGCGATGAT
Found at i:72226778 original size:144 final size:144
Alignment explanation
Indices: 72226456--72226745 Score: 413
Period size: 144 Copynumber: 2.0 Consensus size: 144
72226446 CCGTGCTTAA
* * * *
72226456 TGTGCCTGTGTAAAACCATGTCTGGGACACGGCATCAGTGATGATATATGTGCATATGTAAGACC
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCATATGTAAGACC
* * * * * *
72226521 ATGTCTAGGACATGGCATCAGTGGTGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCA
66 ATGTCTAGGACATGACATCAGCGATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGACA
*
72226586 TCGATGATGATATG
131 TCGACGATGATATG
* * *
72226600 TGTGCCAGTGTAAGACCATGTCTGAGACATGGCATCAGCGATGATATGTGTGC-TAGTGTAAGAT
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCATA-TGTAAGAC
*
72226664 CATGTCTAGGACATGACATCAGCGATGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGAC
65 CATGTCTAGGACATGACATCAGCGATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGAC
72226729 ATC-AGCGATGATATG
130 ATCGA-CGATGATATG
72226744 TG
1 TG
72226746 GATTCATGTG
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
143 3 0.02
144 126 0.98
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (144 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCATATGTAAGACC
ATGTCTAGGACATGACATCAGCGATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGACA
TCGACGATGATATG
Found at i:72230261 original size:32 final size:32
Alignment explanation
Indices: 72230218--72230281 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
72230208 TAGTATGTGA
*
72230218 ATATTCGGATGTGTTTCTGGAAGAATTACCGG
1 ATATTCAGATGTGTTTCTGGAAGAATTACCGG
72230250 ATATTCAGATGTGTTTCTGGAAGAATTACCGG
1 ATATTCAGATGTGTTTCTGGAAGAATTACCGG
72230282 GGTTACCTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (32 bp):
ATATTCAGATGTGTTTCTGGAAGAATTACCGG
Found at i:72232371 original size:40 final size:39
Alignment explanation
Indices: 72232317--72232522 Score: 139
Period size: 39 Copynumber: 5.2 Consensus size: 39
72232307 AACCCAAATC
* ** *
72232317 TAATCACCACCACAAAGCATGTGGGACTTTAAGCCCGGATA
1 TAAT-ACCAGCACAAAGCATACGGGACTTT-AGCCCAGATA
*
72232358 TAATACCAGCACAAAGCCTACGGGACTTTAGCCCAGATA
1 TAATACCAGCACAAAGCATACGGGACTTTAGCCCAGATA
* * * * * *
72232397 TAACACCAGCACGAATGCCTTCGGGGC-TTAACCCAGATA
1 TAATACCAGCAC-AAAGCATACGGGACTTTAGCCCAGATA
* ** * * **
72232436 TAACACCAGCACGAATTCCTTCGGGAC-TTAGCCTGGATA
1 TAATACCAGCAC-AAAGCATACGGGACTTTAGCCCAGATA
* * * *
72232475 TAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCAGATA
1 TAATACCAGCAC-AAAGCATACGGGACTTTAGCCCAGATA
*
72232514 TAACACCAG
1 TAATACCAG
72232523 GACGAATGCC
Statistics
Matches: 146, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
39 110 0.75
40 32 0.22
41 4 0.03
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (39 bp):
TAATACCAGCACAAAGCATACGGGACTTTAGCCCAGATA
Found at i:72232405 original size:39 final size:39
Alignment explanation
Indices: 72232339--72232547 Score: 285
Period size: 39 Copynumber: 5.3 Consensus size: 39
72232329 CAAAGCATGT
* * * *
72232339 GGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTAC
1 GGGAC-TT-AGCCCAGATATAACACCAGCACGAATGCCTTC
72232379 GGGACTTTAGCCCAGATATAACACCAGCACGAATGCCTTC
1 GGGAC-TTAGCCCAGATATAACACCAGCACGAATGCCTTC
* * *
72232419 GGGGCTTAACCCAGATATAACACCAGCACGAATTCCTTC
1 GGGACTTAGCCCAGATATAACACCAGCACGAATGCCTTC
**
72232458 GGGACTTAGCCTGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCAGATATAACACCAGCACGAATGCCTTC
*
72232497 GGGACTTAGCCCAGATATAACACCAGGACGAATGCCTTC
1 GGGACTTAGCCCAGATATAACACCAGCACGAATGCCTTC
*
72232536 AGGACTTAGCCC
1 GGGACTTAGCCC
72232548 GAACATAATT
Statistics
Matches: 152, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 133 0.88
40 19 0.12
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (39 bp):
GGGACTTAGCCCAGATATAACACCAGCACGAATGCCTTC
Found at i:72236248 original size:60 final size:60
Alignment explanation
Indices: 72236170--72236306 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
72236160 CAGTGTTAAC
* *
72236170 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
72236231 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
72236291 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
72236307 TAACATAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:72236270 original size:28 final size:27
Alignment explanation
Indices: 72236169--72236270 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
72236159 TCAGTGTTAA
* *
72236169 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
72236197 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
72236229 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
72236257 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
72236271 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:72249915 original size:40 final size:40
Alignment explanation
Indices: 72249860--72249938 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
72249850 TGCCATTTTC
72249860 AAAATTGAACTAAAAGAGTACCAAAAAGTGGCTTAAATAT
1 AAAATTGAACTAAAAGAGTACCAAAAAGTGGCTTAAATAT
*
72249900 AAAATTGAACTAAAAGAGTGCCAAAAAGTGGCTTAAATA
1 AAAATTGAACTAAAAGAGTACCAAAAAGTGGCTTAAATA
72249939 GTGTGGATGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.22
Consensus pattern (40 bp):
AAAATTGAACTAAAAGAGTACCAAAAAGTGGCTTAAATAT
Found at i:72250109 original size:22 final size:22
Alignment explanation
Indices: 72250067--72250110 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
72250057 AATTATTTAC
* *
72250067 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
72250089 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
72250111 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:72250290 original size:47 final size:47
Alignment explanation
Indices: 72250220--72250312 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
72250210 AGCGAATACT
*
72250220 ATCTAAAAAGGAATTAACTTTTCCGATGCATATACGAAACATACCTC
1 ATCTAAAAAGGAATTAACCTTTCCGATGCATATACGAAACATACCTC
72250267 ATCTAAAAAGGAATTAACCTTTCCGATGCATATACGAAACATACCT
1 ATCTAAAAAGGAATTAACCTTTCCGATGCATATACGAAACATACCT
72250313 TATCGTTTGG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.27
Consensus pattern (47 bp):
ATCTAAAAAGGAATTAACCTTTCCGATGCATATACGAAACATACCTC
Found at i:72250458 original size:40 final size:40
Alignment explanation
Indices: 72250384--72251245 Score: 1638
Period size: 40 Copynumber: 21.6 Consensus size: 40
72250374 AACCCAAGTA
* * *
72250384 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAG
* * * *
72250423 CCTTTGGGTCTTAGCCCGGATTTAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250463 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250503 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250543 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250583 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250623 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250663 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250703 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250743 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250783 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250823 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250863 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250903 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250943 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72250983 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72251023 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72251063 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72251103 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72251143 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72251183 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72251223 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72251246 CATTCGAATA
Statistics
Matches: 810, Mismatches: 11, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
39 11 0.01
40 798 0.99
41 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
Found at i:72263899 original size:40 final size:40
Alignment explanation
Indices: 72263808--72264033 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
72263798 TTTGAATGAT
* * * *
72263808 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
72263848 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
72263888 TTTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
72263927 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
72263967 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
72264008 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
72264034 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 121 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:72264055 original size:119 final size:119
Alignment explanation
Indices: 72263806--72264066 Score: 280
Period size: 119 Copynumber: 2.2 Consensus size: 119
72263796 TATTTGAATG
* *
72263806 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA
** ** *
72263871 TTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACT
66 TTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACT
* * * * **
72263925 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATATCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGG
* * *
72263988 CATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCT
64 CATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CT
* *
72264045 ATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGTTAAGTCCCGAAGG
72264067 TACGTGATTT
Statistics
Matches: 118, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
ATATCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA
TTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACT
Found at i:72269115 original size:22 final size:22
Alignment explanation
Indices: 72269073--72269116 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
72269063 AATTATTTAC
* *
72269073 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
72269095 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
72269117 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:72269417 original size:40 final size:40
Alignment explanation
Indices: 72269343--72269684 Score: 607
Period size: 40 Copynumber: 8.6 Consensus size: 40
72269333 AACCCAAGTA
* * *
72269343 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAG
* * *
72269382 CCTTCGGGTCTTAGCCCGGATTTAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72269422 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72269462 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72269502 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72269542 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72269582 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72269622 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
72269662 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72269685 CATTCGAATA
Statistics
Matches: 292, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
39 12 0.04
40 279 0.96
41 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
Found at i:72270350 original size:41 final size:41
Alignment explanation
Indices: 72270305--72270387 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
72270295 AACTGGAGCT
72270305 AAGAAACTCCAAATTAATTGCCGTAAATTTTTCTTGGCAGA
1 AAGAAACTCCAAATTAATTGCCGTAAATTTTTCTTGGCAGA
72270346 AAGAAACTCCAAATTAATTGCCGTAAATTTTTCTTGGCAGA
1 AAGAAACTCCAAATTAATTGCCGTAAATTTTTCTTGGCAGA
72270387 A
1 A
72270388 GACTCATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (41 bp):
AAGAAACTCCAAATTAATTGCCGTAAATTTTTCTTGGCAGA
Found at i:72280258 original size:22 final size:22
Alignment explanation
Indices: 72280231--72280274 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
72280221 AAAAATAACC
72280231 AAAATTAATCAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
* *
72280253 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTAATTAT
72280275 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:72280273 original size:10 final size:10
Alignment explanation
Indices: 72280231--72280273 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
72280221 AAAAATAACC
*
72280231 AAAATTAATC
1 AAAATTAATT
72280241 AAAATTAATTAT
1 AAAATTAA-T-T
72280253 AAAATTAATT
1 AAAATTAATT
*
72280263 AAAATTCATT
1 AAAATTAATT
72280273 A
1 A
72280274 TGTTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 19 0.66
11 2 0.07
12 8 0.28
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATTAATT
Found at i:72281119 original size:18 final size:19
Alignment explanation
Indices: 72281096--72281134 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72281086 AGAAGGATGG
*
72281096 AATTG-AGATCAATTTTGA
1 AATTGAAGATCAAATTTGA
*
72281114 AATTGAAGCTCAAATTTGA
1 AATTGAAGATCAAATTTGA
72281133 AA
1 AA
72281135 GTTATGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (19 bp):
AATTGAAGATCAAATTTGA
Found at i:72285173 original size:46 final size:44
Alignment explanation
Indices: 72285123--72285237 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 44
72285113 GACGAGAGCT
*
72285123 AGTGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGG-CTACAAGATGT--GCC
* * * *
72285169 AGTGTAAGACATGTCTGAGACAAGCATTGGCTATAAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGTGCC
*
72285213 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
72285238 GCATCGGTAC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
44 11 0.19
45 14 0.24
46 34 0.58
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGTGCC
Found at i:72285323 original size:99 final size:96
Alignment explanation
Indices: 72285210--72285386 Score: 250
Period size: 99 Copynumber: 1.8 Consensus size: 96
72285200 TATAAGATGT
*
72285210 GTCAGTGTAAGACCATGTTTGGGACATGGCATCGGTAC-AGA-TAAGTGAGAGCTAGTGTAAGAC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCAT-GG-ACTAGAGTAA-TGAG-GC-AGTGTAAGAC
72285273 CATGTCTGGGACATGGCAACAACCTCAATAAAGATA
61 CATGTCTGGGACATGGCAACAACCTCAATAAAGATA
* * * *
72285309 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGAGTTATGAGGCAGTGTAAGACTATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATGGACTAGAGTAATGAGGCAGTGTAAGACCATGT
72285374 CTGGGACATGGCA
66 CTGGGACATGGCA
72285387 CCGGCGTTCT
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
96 27 0.38
97 4 0.06
98 7 0.10
99 33 0.46
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.24
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATGGACTAGAGTAATGAGGCAGTGTAAGACCATGT
CTGGGACATGGCAACAACCTCAATAAAGATA
Found at i:72286522 original size:22 final size:21
Alignment explanation
Indices: 72286497--72286537 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
72286487 TCCAATTGGT
*
72286497 CACATGGGCATGTTGCCCCTTC
1 CACACGGGCATG-TGCCCCTTC
*
72286519 CACACGGGCGTGTGCCCCT
1 CACACGGGCATGTGCCCCT
72286538 GTGTCTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.12, C:0.39, G:0.27, T:0.22
Consensus pattern (21 bp):
CACACGGGCATGTGCCCCTTC
Found at i:72296660 original size:37 final size:37
Alignment explanation
Indices: 72296610--72296688 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
72296600 TTATTACGAA
* * *
72296610 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
72296647 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
72296684 GTCTT
1 GTCTT
72296689 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:72296885 original size:47 final size:47
Alignment explanation
Indices: 72296807--72297461 Score: 1247
Period size: 47 Copynumber: 13.9 Consensus size: 47
72296797 CCCTTCGGGA
* * * * * *
72296807 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72296854 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72296901 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72296948 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72296995 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297042 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297089 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297136 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297183 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297230 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297277 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297324 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297371 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72297418 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
72297462 CGCCATACTA
Statistics
Matches: 600, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 600 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72298759 original size:85 final size:85
Alignment explanation
Indices: 72298630--72298808 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
72298620 TATTTTATTG
*
72298630 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72298695 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72298715 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72298780 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72298800 CCCATGCTC
1 CCCATGCTC
72298809 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:72300242 original size:40 final size:40
Alignment explanation
Indices: 72300198--72300318 Score: 161
Period size: 40 Copynumber: 3.0 Consensus size: 40
72300188 GAATACATGT
* * * *
72300198 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
* ***
72300238 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
*
72300278 CACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
72300318 C
1 C
72300319 CACAAGCTCA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
Found at i:72300351 original size:40 final size:40
Alignment explanation
Indices: 72300214--72300520 Score: 260
Period size: 40 Copynumber: 7.7 Consensus size: 40
72300204 CATGATTGCT
* * * * *
72300214 CTTCGGGACCTAGCCCGGATATAAC-ACCAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGC
** * ** *
72300253 TCTTCGGAACTTAGTCCGGATACCTC-ACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGC
** * * * * *
72300293 TCTTCGGAACTTAGCCCGGATATAACCACAAGCTCAATTGC
1 -CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGC
* * * *
72300334 CTTCGGGTCTTAACCCGGGTATAGCAACTCA-CACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACT-AGCACAAATGC
* * * *
72300374 CTTCGGGTCTTAGCCTGGATGTATCAACTTGCACAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGC
* * *
72300414 CTGCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGC
* * * *
72300454 CTTCGGGTCTTAACCCGAATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGC
*
72300494 CTTCGGGTCTTATCCCGGATATATCAA
1 CTTCGGGTCTTAGCCCGGATATATCAA
72300521 TTCACACACA
Statistics
Matches: 220, Mismatches: 44, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
40 209 0.95
41 11 0.05
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGC
Found at i:72300428 original size:120 final size:120
Alignment explanation
Indices: 72300302--72300520 Score: 294
Period size: 120 Copynumber: 1.8 Consensus size: 120
72300292 CTCTTCGGAA
* * * **
72300302 CTTAGCCCGGATATAACCACAAGCTCAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCACA
1 CTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGAATATAGCAACTCACA
* * *
72300367 CGAATGCCTTCGGGTCTTAGCCTGGATGTATCAACTTGCACAATTGCCTGCGGGT
66 CAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAATTGCCTGCGGGT
* *** * * *
72300422 CTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAACCCGAATATATCAATTCGCA
1 CTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGAATATAGCAACTCACA
*
72300487 CAAATGCCTTCGGGTCTTATCCCGGATATATCAA
66 CAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
72300521 TTCACACACA
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
120 83 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (120 bp):
CTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGAATATAGCAACTCACA
CAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAATTGCCTGCGGGT
Found at i:72300585 original size:29 final size:29
Alignment explanation
Indices: 72300546--72300624 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72300536 CTTAATAATC
*
72300546 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72300576 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72300605 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72300625 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72300667 original size:43 final size:43
Alignment explanation
Indices: 72300606--72300708 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
72300596 TGCATTTCAA
*
72300606 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
72300649 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
72300692 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
72300709 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:72302625 original size:37 final size:37
Alignment explanation
Indices: 72302565--72302642 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
72302555 TATTACGAAA
* *
72302565 TCTTACCCGGACATAATCTCCACACGAAGTTATCGAG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGAG
* *
72302602 TCTTACCCGGACAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCT-CCACACGAAGTCATCGAG
72302639 TCTT
1 TCTT
72302643 TAGAGCTCAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 1 0.03
37 35 0.97
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGAG
Found at i:72302830 original size:47 final size:47
Alignment explanation
Indices: 72302761--72303077 Score: 589
Period size: 47 Copynumber: 6.7 Consensus size: 47
72302751 CCCTTCGGGA
* *
72302761 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72302808 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72302855 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72302902 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72302949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72302996 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72303043 CTTATCACATATATATACACTCTCACATTCATCAC
1 CTTATCAC--ATATATACACTTTCACATTCATCAC
72303078 GTNNNNNNNN
Statistics
Matches: 265, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
47 241 0.91
49 24 0.09
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72304937 original size:39 final size:39
Alignment explanation
Indices: 72304875--72304952 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
72304865 CTCTCCCTAA
* *
72304875 ATCCAAATTCGGCACATTGAACAACCCAAATGCTAACCT
1 ATCCAAATCCGGCACATTCAACAACCCAAATGCTAACCT
* *
72304914 ATCCAAGTCCGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATCCGGCACATTCAACAACCCAAATGCTAACCT
72304953 CAACGTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.37, C:0.32, G:0.10, T:0.21
Consensus pattern (39 bp):
ATCCAAATCCGGCACATTCAACAACCCAAATGCTAACCT
Found at i:72305625 original size:200 final size:200
Alignment explanation
Indices: 72305282--72305682 Score: 793
Period size: 200 Copynumber: 2.0 Consensus size: 200
72305272 CCAATTTCCC
72305282 CCATGGCCAAATGCTCAAGACACCATGAAACTAAAAATTTTGTCATGGGCTATGTAATGAACTTA
1 CCATGGCCAAATGCTCAAGACACCATGAAACTAAAAATTTTGTCATGGGCTATGTAATGAACTTA
72305347 ATACCTAACTCAAAATATGCTAAAAAAAATCCATAAGCTAACATGAATTTCTCACCTTATTCATG
66 ATACCTAACTCAAAATATGCTAAAAAAAATCCATAAGCTAACATGAATTTCTCACCTTATTCATG
*
72305412 ACTTAGAATTGCCGAATGGTTGCTCCCTCTCTCCCTCTTAGAATCGGCCAAGAAGAAACAAGAAT
131 ACTTAGAATTGCCGAATGGTTGCTCCCTCTCCCCCTCTTAGAATCGGCCAAGAAGAAACAAGAAT
72305477 AAAGA
196 AAAGA
72305482 CCATGGCCAAATGCTCAAGACACCATGAAACTAAAAATTTTGTCATGGGCTATGTAATGAACTTA
1 CCATGGCCAAATGCTCAAGACACCATGAAACTAAAAATTTTGTCATGGGCTATGTAATGAACTTA
72305547 ATACCTAACTCAAAATATGCTAAAAAAAATCCATAAGCTAACATGAATTTCTCACCTTATTCATG
66 ATACCTAACTCAAAATATGCTAAAAAAAATCCATAAGCTAACATGAATTTCTCACCTTATTCATG
72305612 ACTTAGAATTGCCGAATGGTTGCTCCCTCTCCCCCTCTTAGAATCGGCCAAGAAGAAACAAGAAT
131 ACTTAGAATTGCCGAATGGTTGCTCCCTCTCCCCCTCTTAGAATCGGCCAAGAAGAAACAAGAAT
72305677 AAAGA
196 AAAGA
72305682 C
1 C
72305683 TTGTTTCTTT
Statistics
Matches: 200, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 200 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (200 bp):
CCATGGCCAAATGCTCAAGACACCATGAAACTAAAAATTTTGTCATGGGCTATGTAATGAACTTA
ATACCTAACTCAAAATATGCTAAAAAAAATCCATAAGCTAACATGAATTTCTCACCTTATTCATG
ACTTAGAATTGCCGAATGGTTGCTCCCTCTCCCCCTCTTAGAATCGGCCAAGAAGAAACAAGAAT
AAAGA
Found at i:72316991 original size:53 final size:52
Alignment explanation
Indices: 72316934--72317068 Score: 148
Period size: 53 Copynumber: 2.5 Consensus size: 52
72316924 TCTCCGATGT
* * *
72316934 CATAGCCTAGCTATGGTCTTATACGGATCGCTTGTATCACTTTAATCT-GAA-GC
1 CATAGCCTAACTATGGTCTTATACGGATC-ATT-TATCAC-TTAATCTCCAACGC
* * * *
72316987 CATAGCCCAACTATGGTTTTATACGGGAATCATTTATCACTTATTTTCCAACGC
1 CATAGCCTAACTATGGTCTTATAC-GG-ATCATTTATCACTTAATCTCCAACGC
72317041 CATAGCCTAACTATGGTCTTATACGGAT
1 CATAGCCTAACTATGGTCTTATACGGAT
72317069 ATCGCTTATC
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
52 7 0.10
53 31 0.45
54 28 0.41
55 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (52 bp):
CATAGCCTAACTATGGTCTTATACGGATCATTTATCACTTAATCTCCAACGC
Found at i:72317078 original size:54 final size:53
Alignment explanation
Indices: 72316934--72317085 Score: 157
Period size: 54 Copynumber: 2.8 Consensus size: 53
72316924 TCTCCGATGT
* * *
72316934 CATAGCCTAGCTATGGTCTTATACGG-ATCGCTTGTATCACTT-TAATCTGAAGC
1 CATAGCCTAACTATGGTCTTATACGGAATCGC-T-TATCACTTATTATCTCAAGC
* * ** *
72316987 CATAGCCCAACTATGGTTTTATACGGGAATCATTTATCACTTATTTTC-CAACGC
1 CATAGCCTAACTATGGTCTTATAC-GGAATCGCTTATCACTTATTATCTCAA-GC
*
72317041 CATAGCCTAACTATGGTCTTATACGGATATCGCTTATCAGTTATT
1 CATAGCCTAACTATGGTCTTATACGGA-ATCGCTTATCACTTATT
72317086 GCCATGGTCC
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
53 34 0.42
54 44 0.54
55 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (53 bp):
CATAGCCTAACTATGGTCTTATACGGAATCGCTTATCACTTATTATCTCAAGC
Found at i:72322436 original size:22 final size:22
Alignment explanation
Indices: 72322409--72322451 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
72322399 TTCTAGTAAG
72322409 AACTCATTTAAAGACTTTTAAC
1 AACTCATTTAAAGACTTTTAAC
72322431 AACTCATTTAAAGACTTTTAA
1 AACTCATTTAAAGACTTTTAA
72322452 TGTTATTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (22 bp):
AACTCATTTAAAGACTTTTAAC
Found at i:72324352 original size:25 final size:25
Alignment explanation
Indices: 72324326--72324379 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
72324316 GATCTTTTAA
72324326 TTAATAAAATATTATATTAATATAAT
1 TTAATAAAATATT-TATTAATATAAT
* *
72324352 TTAATTAGATATTTATT-A-ATAAT
1 TTAATAAAATATTTATTAATATAAT
72324375 TTAAT
1 TTAAT
72324380 TATAAGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 10 0.38
24 1 0.04
25 4 0.15
26 11 0.42
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
TTAATAAAATATTTATTAATATAAT
Found at i:72324920 original size:25 final size:25
Alignment explanation
Indices: 72324890--72324940 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
72324880 GTGTTGTAAA
72324890 AAGCATTATGATTAAAAAAATGAGT
1 AAGCATTATGATTAAAAAAATGAGT
72324915 AAGCATTATGATTAAAAAAATGAGT
1 AAGCATTATGATTAAAAAAATGAGT
72324940 A
1 A
72324941 TGTTATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.53, C:0.04, G:0.16, T:0.27
Consensus pattern (25 bp):
AAGCATTATGATTAAAAAAATGAGT
Found at i:72325545 original size:21 final size:20
Alignment explanation
Indices: 72325511--72325549 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
72325501 GGACTAAATC
72325511 GAAAACTTTAAAAACTTTAGG
1 GAAAACTTTAAAAA-TTTAGG
72325532 GAAAAC-TTAGAAAATTTA
1 GAAAACTTTA-AAAATTTA
72325550 ATTATGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (20 bp):
GAAAACTTTAAAAATTTAGG
Found at i:72325855 original size:15 final size:15
Alignment explanation
Indices: 72325835--72325886 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
72325825 GGCCGTATAT
72325835 CACACACGGCTTAGA
1 CACACACGGCTTAGA
* *
72325850 CACACAC-TCGTGT-GT
1 CACACACGGC-T-TAGA
72325865 CACACACGGCTTAGA
1 CACACACGGCTTAGA
72325880 CACACAC
1 CACACAC
72325887 TCGTGTGTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
14 2 0.07
15 25 0.86
16 2 0.07
ACGTcount: A:0.31, C:0.37, G:0.17, T:0.15
Consensus pattern (15 bp):
CACACACGGCTTAGA
Found at i:72325868 original size:30 final size:30
Alignment explanation
Indices: 72325834--72325895 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
72325824 AGGCCGTATA
72325834 TCACACACGGCTTAGACACACACTCGTGTG
1 TCACACACGGCTTAGACACACACTCGTGTG
72325864 TCACACACGGCTTAGACACACACTCGTGTG
1 TCACACACGGCTTAGACACACACTCGTGTG
72325894 TC
1 TC
72325896 TACCCGTGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.34, G:0.19, T:0.21
Consensus pattern (30 bp):
TCACACACGGCTTAGACACACACTCGTGTG
Found at i:72332740 original size:10 final size:10
Alignment explanation
Indices: 72332725--72332775 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
72332715 AATTTTAGCT
72332725 TTTATCTTTA
1 TTTATCTTTA
72332735 TTTATCTTTA
1 TTTATCTTTA
*
72332745 ATTATCTTTAA
1 TTTATCTTT-A
*
72332756 TTT-TCTATA
1 TTTATCTTTA
72332765 TTTATCCTTTA
1 TTTAT-CTTTA
72332776 AATTTAAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
9 4 0.12
10 23 0.68
11 7 0.21
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:72333453 original size:21 final size:21
Alignment explanation
Indices: 72333429--72333468 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
72333419 AACTCTATTT
72333429 ATTTTTACT-ATTTCAATTCTA
1 ATTTTT-CTAATTTCAATTCTA
*
72333450 ATTTTTGTAATTTCAATTC
1 ATTTTTCTAATTTCAATTC
72333469 ATTCCAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ATTTTTCTAATTTCAATTCTA
Found at i:72335072 original size:33 final size:33
Alignment explanation
Indices: 72335035--72335107 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
72335025 GCTAATATGC
*
72335035 TTGATTTCCAACAGCAGATACAAAGACAAACTG
1 TTGATTTCCAACAGCAAATACAAAGACAAACTG
* * * * *
72335068 TTGATTTCCAACTGTAAATACTACGACAAACTT
1 TTGATTTCCAACAGCAAATACAAAGACAAACTG
72335101 TTGATTT
1 TTGATTT
72335108 TCAAAAGGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (33 bp):
TTGATTTCCAACAGCAAATACAAAGACAAACTG
Found at i:72338876 original size:28 final size:28
Alignment explanation
Indices: 72338836--72338904 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
72338826 TAGTAAGTTT
*
72338836 GCACACTTAGTGCT-TAATAATCAAACTC
1 GCACACTTAGTGCTAT-ACAATCAAACTC
* *
72338864 GCACACTTAGTGCTATACAATTAAACTT
1 GCACACTTAGTGCTATACAATCAAACTC
72338892 GCACACTTAGTGC
1 GCACACTTAGTGC
72338905 CAATCTCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCTATACAATCAAACTC
Found at i:72350309 original size:46 final size:47
Alignment explanation
Indices: 72350258--72350357 Score: 159
Period size: 46 Copynumber: 2.2 Consensus size: 47
72350248 TTTTATTTTT
* *
72350258 TTTATTTTTATTTTGTTA-TTTATTGTTTTATTTTATTATTTATTAC
1 TTTATTTTTATTTTATTATTTTATTATTTTATTTTATTATTTATTAC
*
72350304 TTTA-TTTTATTTTATTATTTTATTATTTTATTTTATTCTTTATTAC
1 TTTATTTTTATTTTATTATTTTATTATTTTATTTTATTATTTATTAC
72350350 TTTATTTT
1 TTTATTTT
72350358 GTTTTGATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
45 12 0.24
46 34 0.69
47 3 0.06
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (47 bp):
TTTATTTTTATTTTATTATTTTATTATTTTATTTTATTATTTATTAC
Found at i:72350311 original size:25 final size:25
Alignment explanation
Indices: 72350283--72350362 Score: 114
Period size: 25 Copynumber: 3.4 Consensus size: 25
72350273 TTATTTATTG
72350283 TTTTATTTTATTATTTATTACTTTA
1 TTTTATTTTATTATTTATTACTTTA
72350308 TTTTATTTTATTA-TT-TTA--TTA
1 TTTTATTTTATTATTTATTACTTTA
*
72350329 TTTTATTTTATTCTTTATTACTTTA
1 TTTTATTTTATTATTTATTACTTTA
*
72350354 TTTTGTTTT
1 TTTTATTTT
72350363 GATATTAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
21 15 0.31
22 2 0.04
23 6 0.12
24 2 0.04
25 24 0.49
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (25 bp):
TTTTATTTTATTATTTATTACTTTA
Found at i:72350333 original size:8 final size:8
Alignment explanation
Indices: 72350248--72350335 Score: 78
Period size: 8 Copynumber: 10.9 Consensus size: 8
72350238 GCAACCCAAT
72350248 TTTTATT-
1 TTTTATTA
72350255 TTTT-TTA
1 TTTTATTA
72350262 TTTTTATT-
1 -TTTTATTA
72350270 TTGTTATTTA
1 TT-TTA-TTA
72350280 TTGTT-TTA
1 TT-TTATTA
72350288 TTTTATTA
1 TTTTATTA
72350296 -TTTATTA
1 TTTTATTA
*
72350303 CTTTATTTTA
1 -TTT-TATTA
72350313 TTTTATTA
1 TTTTATTA
72350321 TTTTATTA
1 TTTTATTA
72350329 TTTTATT
1 TTTTATT
72350336 TTATTCTTTA
Statistics
Matches: 69, Mismatches: 2, Indels: 19
0.77 0.02 0.21
Matches are distributed among these distances:
6 2 0.03
7 15 0.22
8 34 0.49
9 9 0.13
10 9 0.13
ACGTcount: A:0.19, C:0.01, G:0.02, T:0.77
Consensus pattern (8 bp):
TTTTATTA
Found at i:72350347 original size:20 final size:20
Alignment explanation
Indices: 72350248--72350362 Score: 106
Period size: 20 Copynumber: 5.5 Consensus size: 20
72350238 GCAACCCAAT
72350248 TTTTATTTTTT-TTATTTTTA
1 TTTTATTTTTTATTA-TTTTA
* * *
72350268 TTTTGTTATTTATTGTTTTA
1 TTTTATTTTTTATTATTTTA
72350288 TTTTATTATTTATTACTTTATTTTA
1 TTTTA-T-TTT-TTA--TTATTTTA
72350313 TTTTATTATTTTATTATTTTA
1 TTTTATT-TTTTATTATTTTA
* *
72350334 TTTTATTCTTTATTACTTTA
1 TTTTATTTTTTATTATTTTA
*
72350354 TTTTGTTTT
1 TTTTATTTT
72350363 GATATTAATA
Statistics
Matches: 78, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
20 36 0.46
21 18 0.23
22 2 0.03
23 7 0.09
24 3 0.04
25 12 0.15
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTTATTTTTTATTATTTTA
Found at i:72350352 original size:8 final size:8
Alignment explanation
Indices: 72350289--72350355 Score: 54
Period size: 8 Copynumber: 8.8 Consensus size: 8
72350279 ATTGTTTTAT
72350289 TTTATTA-
1 TTTATTAC
72350296 TTTATTAC
1 TTTATTAC
*
72350304 TTTATTTTAT
1 TTTA--TTAC
*
72350314 TTTATTAT
1 TTTATTAC
72350322 TTTATTA-
1 TTTATTAC
*
72350329 -TT-TTAT
1 TTTATTAC
72350335 TTTATT-C
1 TTTATTAC
72350342 TTTATTAC
1 TTTATTAC
72350350 TTTATT
1 TTTATT
72350356 TTGTTTTGAT
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
5 3 0.06
6 2 0.04
7 15 0.29
8 24 0.47
10 7 0.14
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTATTAC
Found at i:72365577 original size:19 final size:19
Alignment explanation
Indices: 72365553--72365590 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
72365543 ATACAGAGCC
*
72365553 ACACGCCCGTGTGCTCTAG
1 ACACGCCCGTGTCCTCTAG
72365572 ACACGCCCGTGTCCTCTAG
1 ACACGCCCGTGTCCTCTAG
72365591 CCGTGTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.39, G:0.24, T:0.21
Consensus pattern (19 bp):
ACACGCCCGTGTCCTCTAG
Found at i:72371410 original size:23 final size:23
Alignment explanation
Indices: 72371381--72371429 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
72371371 TGAGTGATTA
72371381 AATTTAATATAAATAAAAGGTAT
1 AATTTAATATAAATAAAAGGTAT
*
72371404 AATTTAATATAAATAAATGGTAT
1 AATTTAATATAAATAAAAGGTAT
72371427 AAT
1 AAT
72371430 GACTATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (23 bp):
AATTTAATATAAATAAAAGGTAT
Found at i:72373204 original size:66 final size:66
Alignment explanation
Indices: 72373134--72373265 Score: 255
Period size: 66 Copynumber: 2.0 Consensus size: 66
72373124 AGCACATAAA
72373134 AGAAATAATTAAACATAGCATATAAAAAAATGAAACTATGCACAAATAAGATAAATGACATACAC
1 AGAAATAATTAAACATAGCATATAAAAAAATGAAACTATGCACAAATAAGATAAATGACATACAC
72373199 T
66 T
*
72373200 AGAAATAATTAAACATAGCATATAAAAAAATGAAACTATGCACAAATAAGATAAATGGCATACAC
1 AGAAATAATTAAACATAGCATATAAAAAAATGAAACTATGCACAAATAAGATAAATGACATACAC
72373265 T
66 T
72373266 TAAAAATGAA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.21
Consensus pattern (66 bp):
AGAAATAATTAAACATAGCATATAAAAAAATGAAACTATGCACAAATAAGATAAATGACATACAC
T
Found at i:72373746 original size:22 final size:21
Alignment explanation
Indices: 72373711--72373786 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
72373701 AAAGGATATC
* *
72373711 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
72373732 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
72373755 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
72373774 TGC-AATCATATCT
1 TACAAATCATATCT
72373787 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:72373771 original size:19 final size:19
Alignment explanation
Indices: 72373747--72373830 Score: 138
Period size: 19 Copynumber: 4.6 Consensus size: 19
72373737 AATCATATCT
72373747 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
72373766 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
72373784 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
72373801 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
72373820 TCTAAGATTGC
1 TCTAAGATTGC
72373831 GTATAATTGA
Statistics
Matches: 61, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
17 16 0.26
18 16 0.26
19 29 0.48
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:72373803 original size:35 final size:37
Alignment explanation
Indices: 72373747--72373829 Score: 134
Period size: 35 Copynumber: 2.3 Consensus size: 37
72373737 AATCATATCT
*
72373747 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
72373784 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
72373820 TCTAAGATTG
1 TCTAAGATTG
72373830 CGTATAATTG
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
35 19 0.43
36 15 0.34
37 10 0.23
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:72373816 original size:14 final size:15
Alignment explanation
Indices: 72373761--72373816 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
72373751 AGATTGCATA
72373761 TCATATCTAAGATTG
1 TCATATCTAAGATTG
72373776 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
72373794 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
72373811 -CATATC
1 TCATATC
72373817 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:72374253 original size:45 final size:45
Alignment explanation
Indices: 72374189--72374506 Score: 295
Period size: 45 Copynumber: 7.1 Consensus size: 45
72374179 GGAAGGCGAT
* *
72374189 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
72374234 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGACAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
72374279 ATTTGCT-TCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* ** * * *
72374323 ATTTACT-TCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
72374367 ATCTGTTATCTCCAATTTGCTCCCCGTCTAATACAAAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * *
72374412 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGCCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* * * *
72374457 ATCTGCTATGTCTTTGATCTGCTCCCCGTTTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
72374504 ATC
1 ATC
72374507 ATCTTGAATC
Statistics
Matches: 229, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
43 6 0.03
44 85 0.37
45 106 0.46
46 1 0.00
47 20 0.09
48 5 0.02
49 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:72374305 original size:44 final size:45
Alignment explanation
Indices: 72374189--72374416 Score: 298
Period size: 45 Copynumber: 5.1 Consensus size: 45
72374179 GGAAGGCGAT
**
72374189 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
72374234 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGACAA
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
72374279 ATTTGCT-TCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
72374323 ATTTACT-TCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
72374367 ATCTGTTATCTCCAATTTGCTCCCCGTCTAATACAAAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
72374412 ATCTG
1 ATCTG
72374417 TCATCTTGGA
Statistics
Matches: 165, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 80 0.48
45 85 0.52
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (45 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:72374575 original size:78 final size:79
Alignment explanation
Indices: 72374446--72375208 Score: 1123
Period size: 78 Copynumber: 9.8 Consensus size: 79
72374436 ATGTAAACAC
* * ** *
72374446 ATGAAGG-CCAGATCTGCTATGTCTTTGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
72374510 TTGAATCTGCTTCA
66 TTGGATCTGCTTCA
* * * * *
72374524 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
72374588 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
* * *
72374602 ATGAAGGT-TAGATCTGTTGTGTCTTCAATCTGCTTCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
72374666 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
* * * * * * *
72374680 ATGAAGGT-TATATCTGTTATGTCTTCGATCTACTCTCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
72374744 TTAGATCTGCTTCA
66 TTGGATCTGCTTCA
* *
72374758 ATGAAGGTC-AGATTTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
72374822 TTGGATCTGATTCA
66 TTGGATCTGCTTCA
72374836 ATGAAGGTCAA-ATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
72374900 TTGGATCTGATTCA
66 TTGGATCTGCTTCA
72374914 ATGAAGGTCAA-ATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
72374978 TTGGATCTGATTCA
66 TTGGATCTGCTTCA
72374992 ATGAAGGTCAA-ATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
72375056 TTGGATCTGATTCA
66 TTGGATCTGCTTCA
72375070 ATGAAGGTCAA-ATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
72375134 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
* * * * * * ** *
72375148 ATGAAGGTC-AGATATGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCTAAATC
1 ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
72375209 TGTTTCTTCG
Statistics
Matches: 643, Mismatches: 37, Indels: 10
0.93 0.05 0.01
Matches are distributed among these distances:
77 2 0.00
78 637 0.99
79 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (79 bp):
ATGAAGGTCAAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
TTGGATCTGCTTCA
Found at i:72375363 original size:44 final size:44
Alignment explanation
Indices: 72375286--72375601 Score: 424
Period size: 44 Copynumber: 7.2 Consensus size: 44
72375276 CATGTGAAAA
* * * *
72375286 CCAAATCTGCTATGTCTTCGATTTTCTCTCTGACAATACAGAGATG
1 CCAAATCTGCTA--TCTTCGATCTGCCCTCTGACAATACAGAGACG
* **
72375332 CCAAATCTGCTATCTTCAATCTGCCCTCTGACAATACAGAGATA
1 CCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACG
* *
72375376 CCAAATCTGCTATCTTTGATCTGCTCCT-TGACAATACAGAGATG
1 CCAAATCTGCTATCTTCGATCTGC-CCTCTGACAATACAGAGACG
* *
72375420 CCAAATCTGCTATCTTCGATCTGCCCTCTGATAATACAAAGACG
1 CCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACG
72375464 CCAAATCTGCTATCTTCGATCTGCTCC-CTGACAATA-AGAGACG
1 CCAAATCTGCTATCTTCGATCTGC-CCTCTGACAATACAGAGACG
*
72375507 CCAAATCTGCTATCTTCGATCTGCCCTCTGACAATATAGAGACG
1 CCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACG
* * *
72375551 CCAAATCTTCTATCTTCGATCT-ACTTCCTGACAATACAGAGACG
1 CCAAATCTGCTATCTTCGATCTGCCCT-CTGACAATACAGAGACG
72375595 CCAAATC
1 CCAAATC
72375602 ATCTTAGATC
Statistics
Matches: 246, Mismatches: 18, Indels: 14
0.88 0.06 0.05
Matches are distributed among these distances:
42 2 0.01
43 44 0.18
44 183 0.74
45 5 0.02
46 12 0.05
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (44 bp):
CCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACG
Found at i:72380013 original size:54 final size:54
Alignment explanation
Indices: 72379955--72380066 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 54
72379945 TACTGAAATG
* *
72379955 CCCTCAAATTGTAAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCAAATTATAAAATTACCAAAGTACCATCAATTTATAGAATTACCGTTTTA
* * * *** * *
72380009 CCCTCGATTTATAGAATTACCATTTTACCATCGATTTATAGAATTACTGTTTTA
1 CCCTCAAATTATAAAATTACCAAAGTACCATCAATTTATAGAATTACCGTTTTA
72380063 CCCT
1 CCCT
72380067 TGATTTACAG
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (54 bp):
CCCTCAAATTATAAAATTACCAAAGTACCATCAATTTATAGAATTACCGTTTTA
Found at i:72380110 original size:27 final size:27
Alignment explanation
Indices: 72379980--72380110 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
72379970 ATTACCAAAG
* *
72379980 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
**
72380007 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
72380034 TACCATCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
72380061 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
72380088 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
72380111 AAAATACCCT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:72380118 original size:27 final size:27
Alignment explanation
Indices: 72380061--72380364 Score: 140
Period size: 27 Copynumber: 11.2 Consensus size: 27
72380051 ATTACTGTTT
* * ****
72380061 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
72380088 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
72380115 TACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * *
72380142 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAA
* * * *
72380169 TACCCTAG-TCTATAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
72380195 TACCACTAG-TTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACTAAAA
* *** *
72380222 TACCACT-GGTTTGTGAAATTACTGAAA
1 TACC-CTCGATTTACAAAATTACTAAAA
* ** *
72380249 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
72380276 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
* *
72380303 TACCCTTGACTTT-CTAAAAATTA-TGGAAA
1 TACCCTCGA-TTTAC--AAAATTACT-AAAA
* * * *
72380332 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
72380359 TACCCT
1 TACCCT
72380365 TGGTTTGTAG
Statistics
Matches: 222, Mismatches: 38, Indels: 34
0.76 0.13 0.12
Matches are distributed among these distances:
26 24 0.11
27 173 0.78
28 8 0.04
29 17 0.08
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:72380119 original size:54 final size:54
Alignment explanation
Indices: 72380007--72380138 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
72379997 ATTACCGTTT
* * * * ****
72380007 TACCCTCGATTTATAGAATTACCATTTTACCATCGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACCATTTTACCATCGATTTACAAAATTACTAAAA
** *
72380061 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCATCGATTTACAAAATTACTAAAA
*
72380115 TACCCTT-AGTTTACAAAATTACCA
1 TACCCTTGA-TTTACAGAATTACCA
72380139 AAATACCCTC
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
53 1 0.02
54 62 0.98
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCATTTTACCATCGATTTACAAAATTACTAAAA
Found at i:72380135 original size:81 final size:81
Alignment explanation
Indices: 72379988--72380136 Score: 174
Period size: 81 Copynumber: 1.8 Consensus size: 81
72379978 AGTACCCTCA
* * * *** * * *
72379988 ATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCATCGATTTATAGAAT
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCATAGATTTACAAAAT
72380053 TACTGTTTTACCCTTG
66 TACTGTTTTACCCTTG
* * *
72380069 ATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTACAAAA
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATA-CCATAGATTTACAAAA
72380133 TTAC
65 TTAC
72380137 CAAAATACCC
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
81 51 0.93
82 4 0.07
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (81 bp):
ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCATAGATTTACAAAAT
TACTGTTTTACCCTTG
Found at i:72380146 original size:54 final size:53
Alignment explanation
Indices: 72380088--72380391 Score: 211
Period size: 54 Copynumber: 5.6 Consensus size: 53
72380078 ATTACTGTTT
* * *
72380088 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCC-TAGTTTACAAAATTACTAAAA
* * * *
72380142 TACCCTCGA-TCAGTAAAATTACCAAAATACCCTAGTCTATAAAATTGCTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCCTAGTTTACAAAATTACTAAAA
* * * *** *
72380195 TACCACTAG-TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACTGAAA
1 TACC-CTCGATTTATAAAATTACCAAAATACC-CTAGTTTACAAAATTACTAAAA
* * *
72380249 TACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAGTTAC-AGAAA
1 TACCCTCGATTTATAAAATTACCAAAATA-CCCTAG-TTTACAAAATTACTA-AAA
* * *** * * *
72380303 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGA-TTTAT-AAAATTACCAAAATACC-CTAGTTTACAAAATTACTAAAA
* * * * * *
72380359 TACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 TACCCTCGATTTATAAAATTACCAAAATACCCT
72380392 TGTAGGATGA
Statistics
Matches: 196, Mismatches: 41, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
53 45 0.23
54 102 0.52
55 12 0.06
56 36 0.18
57 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTAGTTTACAAAATTACTAAAA
Found at i:72380241 original size:80 final size:80
Alignment explanation
Indices: 72380102--72380308 Score: 206
Period size: 80 Copynumber: 2.6 Consensus size: 80
72380092 CTCGATTTAC
72380102 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
72380167 AATACCCTAGTCTAT
66 AATACCCTAGTCTAT
* ** * ** * *
72380182 AAAATTGCTAAAATACCAC-TAGTTTGTAAAATTACCAAAATACCACT-GGTTTGTGAAATTACT
1 AAAATTACTAAAATACC-CTTAGTTTACAAAATTACCAAAATACC-CTCGATCAGTAAAATTACC
* * * *
72380245 GAAATACCCTCAATTTGT
64 AAAATACCCT-AGTCTAT
* * *
72380263 AAAATTACCAAAATACCCCT-GATTTACAAAGTTA-CAGAAATACCCT
1 AAAATTACTAAAATACCCTTAG-TTTACAAAATTACCA-AAATACCCT
72380309 TGACTTTCTA
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
80 65 0.62
81 39 0.38
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
AATACCCTAGTCTAT
Found at i:72380488 original size:27 final size:27
Alignment explanation
Indices: 72380424--72380488 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
72380414 ACCTCTATTA
*
72380424 GGTAAAAAGACCATAAAGCCCCTGTAG
1 GGTAAAATGACCATAAAGCCCCTGTAG
* *
72380451 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCATAAAGCCCCTGTAG
72380478 GGTAAAATGAC
1 GGTAAAATGAC
72380489 GAATATGTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.20, G:0.26, T:0.17
Consensus pattern (27 bp):
GGTAAAATGACCATAAAGCCCCTGTAG
Found at i:72381378 original size:25 final size:26
Alignment explanation
Indices: 72381291--72381438 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
72381281 GAGGAAGTGC
72381291 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
72381317 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
72381343 AAAAGGGCTTATGTCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
72381369 -AAAGGGCTTATGCCCCGGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
72381394 AAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
72381419 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
72381439 ATTAAAGAGG
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
25 53 0.49
26 56 0.51
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:72381397 original size:51 final size:51
Alignment explanation
Indices: 72381291--72381438 Score: 203
Period size: 51 Copynumber: 2.9 Consensus size: 51
72381281 GAGGAAGTGC
72381291 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATG-CCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* **
72381343 AAAAGGGCTTATGTCCCAGTTTATTG-AAAGGGCTTATGCCCCGGTTTATTG
1 AAAAGGGCTTATG-CCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
**
72381394 AAAAGGGCTT-TGCCCTAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCC-AGTTTATTGAAAAGGGCTTATGCCCCAGTT
72381439 ATTAAAGAGG
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
49 3 0.03
50 18 0.21
51 41 0.47
52 25 0.29
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:72381642 original size:42 final size:42
Alignment explanation
Indices: 72381583--72381674 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
72381573 TAGTCTCCCC
* ** *
72381583 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
72381625 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
72381667 AAATGGGC
1 AAATGGGC
72381675 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:72381742 original size:31 final size:31
Alignment explanation
Indices: 72381698--72381774 Score: 138
Period size: 31 Copynumber: 2.5 Consensus size: 31
72381688 CGTTTACAGT
72381698 AAAA-GCTTCGGCCCAATGATATGATTTATG
1 AAAAGGCTTCGGCCCAATGATATGATTTATG
*
72381728 AAAAGGCTTTGGCCCAATGATATGATTTATG
1 AAAAGGCTTCGGCCCAATGATATGATTTATG
72381759 AAAAGGCTTCGGCCCA
1 AAAAGGCTTCGGCCCA
72381775 GTAACCGTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 4 0.09
31 40 0.91
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAATGATATGATTTATG
Found at i:72385820 original size:22 final size:21
Alignment explanation
Indices: 72385785--72385860 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
72385775 AAAGGATATC
* *
72385785 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
72385806 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
72385829 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
72385848 TGC-AATCATATCT
1 TACAAATCATATCT
72385861 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:72385845 original size:19 final size:19
Alignment explanation
Indices: 72385821--72385911 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
72385811 AATCATATCT
72385821 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
72385840 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
72385858 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
72385875 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
*
72385894 TCTAAGATTTCATATCAT
1 TCTAAGATTGCATATCAT
72385912 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:72385877 original size:35 final size:37
Alignment explanation
Indices: 72385821--72385911 Score: 132
Period size: 35 Copynumber: 2.5 Consensus size: 37
72385811 AATCATATCT
*
72385821 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
72385858 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
*
72385894 TCTAAGATTTCATATCAT
1 TCTAAGA-TTGATATCAT
72385912 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
35 19 0.39
36 12 0.24
37 12 0.24
38 6 0.12
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:72385890 original size:14 final size:15
Alignment explanation
Indices: 72385835--72385890 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
72385825 AGATTGCATA
72385835 TCATATCTAAGATTG
1 TCATATCTAAGATTG
72385850 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
72385868 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
72385885 -CATATC
1 TCATATC
72385891 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:72386298 original size:18 final size:20
Alignment explanation
Indices: 72386263--72386301 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
72386253 GAAATTTAAG
72386263 ATAAAATAACAAATAAAATA
1 ATAAAATAACAAATAAAATA
*
72386283 ATAATATAA-AAA-AAAATA
1 ATAAAATAACAAATAAAATA
72386301 A
1 A
72386302 ATAGACGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 3 0.17
20 8 0.44
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (20 bp):
ATAAAATAACAAATAAAATA
Found at i:72386905 original size:41 final size:41
Alignment explanation
Indices: 72386848--72386945 Score: 178
Period size: 41 Copynumber: 2.4 Consensus size: 41
72386838 CGAACCCAAT
*
72386848 ATGAAACACCTAAGCTTGTGGGATTGATTAAGGTCCTTGTA
1 ATGAAACACCTAAGCTTGTGGGATTGATTAAGGTCATTGTA
*
72386889 ATGAAACGCCTAAGCTTGTGGGATTGATTAAGGTCATTGTA
1 ATGAAACACCTAAGCTTGTGGGATTGATTAAGGTCATTGTA
72386930 ATGAAACACCTAAGCT
1 ATGAAACACCTAAGCT
72386946 GGTTAACATT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (41 bp):
ATGAAACACCTAAGCTTGTGGGATTGATTAAGGTCATTGTA
Found at i:72389975 original size:19 final size:19
Alignment explanation
Indices: 72389948--72389985 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
72389938 ATTACAATTC
72389948 CATAAAT-AATATATACCTT
1 CATAAATAAATAT-TACCTT
*
72389967 CATATATAAATATTACCTT
1 CATAAATAAATATTACCTT
72389986 GGTCGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (19 bp):
CATAAATAAATATTACCTT
Found at i:72390553 original size:30 final size:31
Alignment explanation
Indices: 72390517--72390574 Score: 109
Period size: 30 Copynumber: 1.9 Consensus size: 31
72390507 AATGTATAAA
72390517 CATGGTCTTACTCGCACA-CATATATCGATG
1 CATGGTCTTACTCGCACATCATATATCGATG
72390547 CATGGTCTTACTCGCACATCATATATCG
1 CATGGTCTTACTCGCACATCATATATCG
72390575 GAATCCTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.67
31 9 0.33
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.31
Consensus pattern (31 bp):
CATGGTCTTACTCGCACATCATATATCGATG
Found at i:72394464 original size:39 final size:39
Alignment explanation
Indices: 72394387--72394465 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
72394377 ATAAAGATGT
* * *
72394387 TTTGAGTATTGTGATATATGATTATATGCTATGTGATTA
1 TTTGAGTATTGTAATATATGATTATATGCTAGGCGATTA
* * *
72394426 TTTGAGTATTGTAATATATGCTTGTATGTTAGGCGATTA
1 TTTGAGTATTGTAATATATGATTATATGCTAGGCGATTA
72394465 T
1 T
72394466 ATGTGTAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.48
Consensus pattern (39 bp):
TTTGAGTATTGTAATATATGATTATATGCTAGGCGATTA
Found at i:72407692 original size:12 final size:12
Alignment explanation
Indices: 72407675--72407715 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
72407665 TGGGGGTAGG
72407675 ATCTGATTATGT
1 ATCTGATTATGT
*
72407687 ATCTGAATATGT
1 ATCTGATTATGT
* *
72407699 ATTTGATTATGC
1 ATCTGATTATGT
72407711 ATCTG
1 ATCTG
72407716 TATCTGATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (12 bp):
ATCTGATTATGT
Found at i:72417343 original size:27 final size:27
Alignment explanation
Indices: 72417312--72417486 Score: 199
Period size: 27 Copynumber: 6.4 Consensus size: 27
72417302 TAAATTGTAC
72417312 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72417339 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72417365 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72417393 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72417421 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72417448 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72417475 AGCACTGAGTGT
1 AGCACTAAGTGT
72417487 ACGGACTCAA
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72417426 original size:82 final size:81
Alignment explanation
Indices: 72417313--72417468 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72417303 AAATTGTACA
* *
72417313 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72417377 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72417394 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72417459 TGCGAGTTGA
65 TGCGAATTGA
72417469 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72417480 original size:82 final size:81
Alignment explanation
Indices: 72417309--72417486 Score: 223
Period size: 82 Copynumber: 2.2 Consensus size: 81
72417299 GATTAAATTG
* *
72417309 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72417374 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72417390 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72417454 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72417472 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
72417487 ACGGACTCAA
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72425443 original size:27 final size:27
Alignment explanation
Indices: 72425412--72425589 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72425402 TGAATTGTAC
72425412 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72425439 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72425465 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72425493 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72425521 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72425548 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72425575 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72425590 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72425477 original size:54 final size:55
Alignment explanation
Indices: 72425387--72425589 Score: 216
Period size: 54 Copynumber: 3.7 Consensus size: 55
72425377 GAGATTGGCG
* * *
72425387 CTAAGTGTGCGGGATTGAAT-TGTACAGCACTAAGTGTGCGATTTGACTATGTTGCA
1 CTAAGTGTGC-GAATTGAATATG-ATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * * **
72425443 CTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCGGCA
1 CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * * *
72425497 CTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGA-ATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * *
72425552 CTAAGTGTGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCG
72425590 GACTCAATAT
Statistics
Matches: 124, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
54 61 0.49
55 51 0.41
56 12 0.10
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
Found at i:72425580 original size:82 final size:81
Alignment explanation
Indices: 72425387--72425589 Score: 237
Period size: 82 Copynumber: 2.5 Consensus size: 81
72425377 GAGATTGGCG
* * *
72425387 CTAAGTGTGCGGGATTGAATTGTACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTG
1 CTAAGTGTGCGAG-TTG-ATTATACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTG
*
72425452 CGAAATGAATATGATGCA
64 CGAAATGAATACGATGCA
* ** * *
72425470 CTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC
1 CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGC
** *
72425535 GATTTGATTACG-TAGCA
65 GAAATGAATACGAT-GCA
* *
72425552 CTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCG
72425590 GACTCAATAT
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
81 19 0.19
82 69 0.70
83 11 0.11
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
AAATGAATACGATGCA
Found at i:72436172 original size:13 final size:12
Alignment explanation
Indices: 72436140--72436194 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
72436130 TGAAATATTT
72436140 TAATTTAAAATA
1 TAATTTAAAATA
72436152 TTTAATTTCAAAATA
1 --TAATTT-AAAATA
72436167 TAATTTAAAATA
1 TAATTTAAAATA
72436179 T--TTT--AATA
1 TAATTTAAAATA
72436187 TAATTTAA
1 TAATTTAA
72436195 TATAAAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
8 5 0.14
10 6 0.17
12 7 0.19
13 6 0.17
14 6 0.17
15 6 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATTTAAAATA
Done.