Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 218 of 276
Found at i:72436185 original size:15 final size:14
Alignment explanation
Indices: 72436127--72436181 Score: 69
Period size: 15 Copynumber: 3.9 Consensus size: 14
72436117 AAAATAAGAT
*
72436127 ATTTGAAATATTTTA
1 ATTTAAAATA-TTTA
72436142 ATTTAAAATATTTA
1 ATTTAAAATATTTA
72436156 ATTTCAAAATA--TA
1 ATTT-AAAATATTTA
72436169 ATTTAAAATATTT
1 ATTTAAAATATTT
72436182 TAATATAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
12 6 0.17
13 6 0.17
14 9 0.25
15 15 0.42
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTTAAAATATTTA
Found at i:72436193 original size:10 final size:10
Alignment explanation
Indices: 72436163--72436199 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
72436153 TTAATTTCAA
72436163 AATATAATTT
1 AATATAATTT
* *
72436173 AAAATATTTT
1 AATATAATTT
72436183 AATATAATTT
1 AATATAATTT
72436193 AATATAA
1 AATATAA
72436200 AAATAATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AATATAATTT
Found at i:72436307 original size:55 final size:59
Alignment explanation
Indices: 72436201--72436320 Score: 167
Period size: 55 Copynumber: 2.1 Consensus size: 59
72436191 TTAATATAAA
* * * *
72436201 AATAATTATATTAAACATTTTATTAAATTATATATTATTTTTATTAAATTATATTTAAT
1 AATAATTAAATTAAACATATGATTAAATTATATATTATTATTATTAAATTATATTTAAT
*
72436260 AATAATTAAATTAAA-ATATGATTAAA-T-TAT-TTATTATTATTAAATTATTTTTAAT
1 AATAATTAAATTAAACATATGATTAAATTATATATTATTATTATTAAATTATATTTAAT
72436315 AATAAT
1 AATAAT
72436321 CCTATTAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
55 29 0.52
56 3 0.05
57 1 0.02
58 9 0.16
59 14 0.25
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.52
Consensus pattern (59 bp):
AATAATTAAATTAAACATATGATTAAATTATATATTATTATTATTAAATTATATTTAAT
Found at i:72436520 original size:16 final size:16
Alignment explanation
Indices: 72436499--72436550 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
72436489 TGAATTATTG
*
72436499 ATTACAACTTTATTCC
1 ATTACAACTATATTCC
* * *
72436515 ATTACACCTATACTAC
1 ATTACAACTATATTCC
*
72436531 ATTACAACTCTATTCC
1 ATTACAACTATATTCC
72436547 ATTA
1 ATTA
72436551 AAACAAACCA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTACAACTATATTCC
Found at i:72437384 original size:21 final size:20
Alignment explanation
Indices: 72437346--72437385 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
72437336 TTAATTCTCT
72437346 TAAATATTTTTTTAAATTAA
1 TAAATATTTTTTTAAATTAA
72437366 TAAAT-TTTTATTATAAATTA
1 TAAATATTTT-TT-TAAATTA
72437386 GATCAATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TAAATATTTTTTTAAATTAA
Found at i:72439881 original size:18 final size:18
Alignment explanation
Indices: 72439849--72439899 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
72439839 ATACCCATTT
*
72439849 CTCTCCATC-TTTCTTTC
1 CTCTCTATCTTTTCTTTC
72439866 CTCTCTATCTTTTCTTTC
1 CTCTCTATCTTTTCTTTC
*
72439884 CTCTCTTATCTCTTCT
1 CTCTC-TATCTTTTCT
72439900 GTGCCCTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.27
18 13 0.43
19 9 0.30
ACGTcount: A:0.06, C:0.37, G:0.00, T:0.57
Consensus pattern (18 bp):
CTCTCTATCTTTTCTTTC
Found at i:72446685 original size:13 final size:13
Alignment explanation
Indices: 72446667--72446692 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72446657 AATGAATTAA
72446667 CTGATTTGATCTC
1 CTGATTTGATCTC
72446680 CTGATTTGATCTC
1 CTGATTTGATCTC
72446693 TAAGAAGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
CTGATTTGATCTC
Found at i:72461392 original size:40 final size:40
Alignment explanation
Indices: 72461344--72461531 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
72461334 GCAAACACAT
* * *
72461344 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72461384 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72461424 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72461464 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72461504 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
72461532 TCCAATGCTC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:72468832 original size:247 final size:247
Alignment explanation
Indices: 72468396--72468889 Score: 961
Period size: 247 Copynumber: 2.0 Consensus size: 247
72468386 CGGATTAATA
**
72468396 GCATTAGGTTGAGAGTCTGCCGGCACTGTCCCTTGTGCGGGAGCAGGCGCTACACTCTCAAGATC
1 GCATTAGGTTGAGAGTCCACCGGCACTGTCCCTTGTGCGGGAGCAGGCGCTACACTCTCAAGATC
72468461 ATCAGCTACCGCTCGGTCGGGATCGGGATCCATTACTATAAATAAACACATTTGCAAATGTCAGA
66 ATCAGCTACCGCTCGGTCGGGATCGGGATCCATTACTATAAATAAACACATTTGCAAATGTCAGA
72468526 AATCACCACACTATCAATTAATCACATAAAATGGCATGTATAGCTAGACCCCAACACATTACGGT
131 AATCACCACACTATCAATTAATCACATAAAATGGCATGTATAGCTAGACCCCAACACATTACGGT
72468591 AGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACACC
196 AGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACACC
*
72468643 GCATTAGGTTGAGAGTCCACCGGCGCTGTCCCTTGTGCGGGAGCAGGCGCTACACTCTCAAGATC
1 GCATTAGGTTGAGAGTCCACCGGCACTGTCCCTTGTGCGGGAGCAGGCGCTACACTCTCAAGATC
72468708 ATCAGCTACCGCTCGGTCGGGATCGGGATCCATTACTATAAATAAACACATTTGCAAATGTCAGA
66 ATCAGCTACCGCTCGGTCGGGATCGGGATCCATTACTATAAATAAACACATTTGCAAATGTCAGA
72468773 AATCACCACACTATCAATTAATCACATAAAATGGCATGTATAGCTAGACCCCAACACATTACGGT
131 AATCACCACACTATCAATTAATCACATAAAATGGCATGTATAGCTAGACCCCAACACATTACGGT
72468838 AGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACACC
196 AGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACACC
72468890 CCGTACCCGA
Statistics
Matches: 244, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
247 244 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (247 bp):
GCATTAGGTTGAGAGTCCACCGGCACTGTCCCTTGTGCGGGAGCAGGCGCTACACTCTCAAGATC
ATCAGCTACCGCTCGGTCGGGATCGGGATCCATTACTATAAATAAACACATTTGCAAATGTCAGA
AATCACCACACTATCAATTAATCACATAAAATGGCATGTATAGCTAGACCCCAACACATTACGGT
AGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAAAATTGTAACACC
Found at i:72474326 original size:50 final size:50
Alignment explanation
Indices: 72474261--72474360 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
72474251 AATTAAGTAC
*
72474261 GATCATAAATTGACGGACAAGACCATAGTTGGACTATGGCATTAATTGAA
1 GATCATAAATTGACGGACAAGACCATAGTTGGACTATGGCATCAATTGAA
* *
72474311 GATCATAAATTGACGGATAATACCATAGTTGGACTATGGCATCAATTGAA
1 GATCATAAATTGACGGACAAGACCATAGTTGGACTATGGCATCAATTGAA
72474361 TGATGTACTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (50 bp):
GATCATAAATTGACGGACAAGACCATAGTTGGACTATGGCATCAATTGAA
Found at i:72477609 original size:7 final size:7
Alignment explanation
Indices: 72477597--72477621 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
72477587 TGGAAACAAC
72477597 TAAATTT
1 TAAATTT
72477604 TAAATTT
1 TAAATTT
72477611 TAAATTT
1 TAAATTT
72477618 TAAA
1 TAAA
72477622 AACCTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:72481680 original size:93 final size:93
Alignment explanation
Indices: 72481567--72482390 Score: 1603
Period size: 93 Copynumber: 8.9 Consensus size: 93
72481557 CGAATATTTG
*
72481567 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
72481632 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
72481660 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
72481725 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
72481753 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
72481818 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
72481846 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
72481911 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
72481939 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
72482004 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
72482032 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
72482097 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
72482125 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
72482190 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
72482218 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
72482283 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * *
72482311 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
*
72482376 TTGAGTCCGAGTTCG
66 TTGAGTCCAAGTTCG
72482391 CTTATGGGCG
Statistics
Matches: 726, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 726 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:72488164 original size:46 final size:46
Alignment explanation
Indices: 72488114--72488289 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
72488104 TATTTGGGCA
72488114 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * ** *
72488160 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAATTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGA--A--CG
* *
72488207 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
72488253 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
72488290 GCTGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:72488221 original size:93 final size:93
Alignment explanation
Indices: 72488110--72488282 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
72488100 TGGATATTTG
* *
72488110 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
72488175 TTGAGTCCGAGTTCGTGAGATGTAATTA
66 TTGAGTCCGAGTTCGTGAGATGTAATTA
* * *
72488203 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
72488268 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
72488283 CTTATGGGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAATTA
Found at i:72492263 original size:53 final size:53
Alignment explanation
Indices: 72492198--72492298 Score: 157
Period size: 53 Copynumber: 1.9 Consensus size: 53
72492188 ATGGCATCAT
*
72492198 ATATCGTGTAAGACCGTAACAAGTAGGTTATGACATTATATGGAAAGAAGCCC
1 ATATCGTGTAAGACCGTAACAAGTAGGTTATGACATCATATGGAAAGAAGCCC
** * *
72492251 ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATGGAAAGA
1 ATATCGTGTAAGACCGTAACAAGTAGGTTATGACATCATATGGAAAGA
72492299 TTTAAGAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (53 bp):
ATATCGTGTAAGACCGTAACAAGTAGGTTATGACATCATATGGAAAGAAGCCC
Found at i:72492507 original size:57 final size:56
Alignment explanation
Indices: 72492415--72492597 Score: 161
Period size: 57 Copynumber: 3.2 Consensus size: 56
72492405 AAGAGAAGAA
* * * * *
72492415 AAGCCTTTGTGGC-AATCTCTATTTAAGGACACCTTTATAGTAAAATTATAGAAGGGT
1 AAGCCTTTGTGGCGAA-C-CTATTAAAGGAAACCTTTATAGCAAAACTATAGAAAGGT
* * * * * *
72492472 AAGCCTTCGTGGCGAACCTATTAAAGGATAGCCTTTGTGGCAAAACTCTGGAAAGGT
1 AAGCCTTTGTGGCGAACCTATTAAAGGA-AACCTTTATAGCAAAACTATAGAAAGGT
* * * * * * *
72492529 AAGCCTTTGTGGTGAACCTGTTAAAGGAAAACCTTTATGGAAAAACTCTATAAAAGT
1 AAGCCTTTGTGGCGAACCTATTAAAGG-AAACCTTTATAGCAAAACTATAGAAAGGT
72492586 AAGCCTTTGTGG
1 AAGCCTTTGTGG
72492598 AAAAGCACTT
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
56 10 0.10
57 90 0.87
58 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (56 bp):
AAGCCTTTGTGGCGAACCTATTAAAGGAAACCTTTATAGCAAAACTATAGAAAGGT
Found at i:72492511 original size:28 final size:29
Alignment explanation
Indices: 72492466--72492564 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 29
72492456 AAAATTATAG
* *
72492466 AAGGGTAAGCCTTCGTGGCGAACCTATTA
1 AAGGATAAGCCTTTGTGGCGAACCTATTA
* * * *
72492495 AAGGAT-AGCCTTTGTGGCAAAACTCTGGA
1 AAGGATAAGCCTTTGTGGCGAACCTAT-TA
* *
72492524 AAGG-TAAGCCTTTGTGGTGAACCTGTTA
1 AAGGATAAGCCTTTGTGGCGAACCTATTA
*
72492552 AAGGA-AAACCTTT
1 AAGGATAAGCCTTT
72492565 ATGGAAAAAC
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
28 29 0.53
29 26 0.47
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (29 bp):
AAGGATAAGCCTTTGTGGCGAACCTATTA
Found at i:72492534 original size:29 final size:28
Alignment explanation
Indices: 72492493--72492601 Score: 96
Period size: 29 Copynumber: 3.8 Consensus size: 28
72492483 GCGAACCTAT
72492493 TAAAGG-ATAGCCTTTGTGGCAAAACTCTG
1 TAAAGGTA-AGCCTTTGTGG-AAAACTCTG
* **
72492522 GAAAGGTAAGCCTTTGTGGTGAAC-CTG
1 TAAAGGTAAGCCTTTGTGGAAAACTCTG
* * * *
72492549 TTAAAGGAAAACCTTTATGGAAAAACTCTA
1 -TAAAGGTAAGCCTTTGTGG-AAAACTCTG
*
72492579 TAAAAGTAAGCCTTTGTGGAAAA
1 TAAAGGTAAGCCTTTGTGGAAAA
72492602 GCACTTAAAG
Statistics
Matches: 62, Mismatches: 14, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
27 3 0.05
28 22 0.35
29 34 0.55
30 3 0.05
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.27
Consensus pattern (28 bp):
TAAAGGTAAGCCTTTGTGGAAAACTCTG
Found at i:72492610 original size:57 final size:57
Alignment explanation
Indices: 72492470--72492628 Score: 142
Period size: 57 Copynumber: 2.8 Consensus size: 57
72492460 TTATAGAAGG
* ** * * * * * *
72492470 GTAAGCCTTCGTGGCGAACCTA-TTAAAGGATAGCCTTTGTGGCAAAACTCTGGAAAG
1 GTAAGCCTTTGTGGAAAACC-ACTTAAAGGAAAACCTTTATGGAAAAACTCTAGAAAA
** ** *
72492527 GTAAGCCTTTGTGGTGAACCTGTTAAAGGAAAACCTTTATGGAAAAACTCTATAAAA
1 GTAAGCCTTTGTGGAAAACCACTTAAAGGAAAACCTTTATGGAAAAACTCTAGAAAA
* * *
72492584 GTAAGCCTTTGTGGAAAAGCACTTAAA-GAACACTTTTATGGAAAA
1 GTAAGCCTTTGTGGAAAACCACTTAAAGGAAAACCTTTATGGAAAA
72492629 TCTGTGAAAG
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
56 16 0.19
57 68 0.81
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (57 bp):
GTAAGCCTTTGTGGAAAACCACTTAAAGGAAAACCTTTATGGAAAAACTCTAGAAAA
Found at i:72500730 original size:27 final size:27
Alignment explanation
Indices: 72500683--72500771 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
72500673 TGGATAAGTT
*
72500683 GTAGAATTAT-AAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
72500709 GTAGAATTATCGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * * *
72500736 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
72500763 GTAAAATTA
1 GTAGAATTA
72500772 CCATTTTGCC
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
26 10 0.19
27 44 0.81
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:72500818 original size:27 final size:26
Alignment explanation
Indices: 72500774--72500827 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
72500764 TAAAATTACC
72500774 ATTTTGCCCCTATGGTGTTAAATGACT
1 ATTTTGCCCCTATGGTG-TAAATGACT
*
72500801 ATTTTGCCCCT-CGTGTGTAAATGACT
1 ATTTTGCCCCTATG-GTGTAAATGACT
72500827 A
1 A
72500828 ACTTGTGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (26 bp):
ATTTTGCCCCTATGGTGTAAATGACT
Found at i:72501514 original size:67 final size:67
Alignment explanation
Indices: 72501406--72501581 Score: 343
Period size: 67 Copynumber: 2.6 Consensus size: 67
72501396 GAGGAAGCGT
72501406 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTAGTGACTTCGTTACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTAGTGACTTCGTTACAA
72501471 TA
66 TA
72501473 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTAGTGACTTCGTTACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTAGTGACTTCGTTACAA
72501538 TA
66 TA
*
72501540 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATAT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATAT
72501582 ATATCTGTTC
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 108 1.00
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTAGTGACTTCGTTACAA
TA
Found at i:72501611 original size:26 final size:27
Alignment explanation
Indices: 72501582--72501641 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
72501572 CCACATATAT
*
72501582 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
72501608 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
72501635 ATATCTG
1 ATATCTG
72501642 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:72503837 original size:42 final size:42
Alignment explanation
Indices: 72503768--72504063 Score: 369
Period size: 42 Copynumber: 7.0 Consensus size: 42
72503758 TGACATTAGG
* *
72503768 GATACTGAGATTACGTGTAAGAGCATATCTGGGATATGGCATC
1 GATA-TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
* *
72503811 TATATGAGATTTCGTGTAAGACCATATCTGCGATATGGCATC
1 GATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
* * * *
72503853 GATATGAGATTTCGTGTAAGACCATAGCTGAGCTATTGGCATT
1 GATATGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATC
* * * *
72503896 GATACGAGATTACATGTAAGACCATATCTGGGATATGACATC
1 GATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
* *
72503938 TATATGAGATTTTGTGTAAGACCATATCTGGGATATGGCATC
1 GATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
* * *
72503980 GATATGAGATTTCGTGTAACACCATAGT-TGGGCTATTGGCAAC
1 GATATGAGATTTCGTGTAAGACCATA-TCTGGGATA-TGGCATC
* * *
72504023 GATACGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 GATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
72504064 TGGTACAGTA
Statistics
Matches: 215, Mismatches: 34, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
42 142 0.66
43 73 0.34
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
GATATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATC
Found at i:72503915 original size:85 final size:84
Alignment explanation
Indices: 72503768--72504065 Score: 366
Period size: 85 Copynumber: 3.5 Consensus size: 84
72503758 TGACATTAGG
*
72503768 GATACTGAGATTACGTGTAAGAGCATATCTGGGATATGGCATCT-ATATGAGATTTCGTGTAAGA
1 GATA-TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT-TGATATGAGATTTCGTGTAAGA
*
72503832 CCATATCTGCGATATGGCATC
64 CCATATCTGGGATATGGCATC
* * * * * * *
72503853 GATATGAGATTTCGTGTAAGACCATAGCTGAGCTATTGGCATTGATACGAGATTACATGTAAGAC
1 GATATGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATTGATATGAGATTTCGTGTAAGAC
*
72503918 CATATCTGGGATATGACATC
65 CATATCTGGGATATGGCATC
* ** * *
72503938 TATATGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCGTGTAACACC
1 GATATGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCGTGTAAGACC
* *
72504003 ATAGT-TGGGCTATTGGCAAC
66 ATA-TCTGGGATA-TGGCATC
* *
72504023 GATACGAGATTACATGTAAGACCATATCTGGGATATGGCATTG
1 GATATGAGATTACGTGTAAGACCATATCTGGGATATGGCATTG
72504066 GTACAGTACT
Statistics
Matches: 180, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
84 61 0.34
85 119 0.66
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (84 bp):
GATATGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCGTGTAAGACC
ATATCTGGGATATGGCATC
Found at i:72504004 original size:127 final size:127
Alignment explanation
Indices: 72503768--72504059 Score: 485
Period size: 127 Copynumber: 2.3 Consensus size: 127
72503758 TGACATTAGG
* * *
72503768 GATACTGAGATTACGTGTAAGAGCATATCTGGGATATGGCATCTATATGAGATTTCGTGTAAGAC
1 GATAC-GAGATTACATGTAAGACCATATCTGGGATATGACATCTATATGAGATTTCGTGTAAGAC
* **
72503833 CATATCTGCGATATGGCATCGATATGAGATTTCGTGTAAGACCATAGCTGAGCTATTGGCATT
65 CATATCTGCGATATGGCATCGATATGAGATTTCGTGTAACACCATAGCTGAGCTATTGGCAAC
*
72503896 GATACGAGATTACATGTAAGACCATATCTGGGATATGACATCTATATGAGATTTTGTGTAAGACC
1 GATACGAGATTACATGTAAGACCATATCTGGGATATGACATCTATATGAGATTTCGTGTAAGACC
* * *
72503961 ATATCTGGGATATGGCATCGATATGAGATTTCGTGTAACACCATAGTTGGGCTATTGGCAAC
66 ATATCTGCGATATGGCATCGATATGAGATTTCGTGTAACACCATAGCTGAGCTATTGGCAAC
72504023 GATACGAGATTACATGTAAGACCATATCTGGGATATG
1 GATACGAGATTACATGTAAGACCATATCTGGGATATG
72504060 GCATTGGTAC
Statistics
Matches: 154, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
127 149 0.97
128 5 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (127 bp):
GATACGAGATTACATGTAAGACCATATCTGGGATATGACATCTATATGAGATTTCGTGTAAGACC
ATATCTGCGATATGGCATCGATATGAGATTTCGTGTAACACCATAGCTGAGCTATTGGCAAC
Found at i:72505700 original size:30 final size:30
Alignment explanation
Indices: 72505643--72505700 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
72505633 TTTTCAGACC
* **
72505643 TAGGGGTAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
72505673 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
72505701 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:72506177 original size:46 final size:46
Alignment explanation
Indices: 72506093--72506209 Score: 164
Period size: 46 Copynumber: 2.5 Consensus size: 46
72506083 GAGAGCTAGA
* *
72506093 GTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACG-AGCGCCAGT
1 GTAAGA-CATGTCTGGGACAT-GCATTGGCATCGAGACGTA-AGCCAGT
* *
72506141 GTAAGACATGTCTAGGACATGCATTGGCCTCGAGACGTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCATTGGCATCGAGACGTAAGCCAGT
72506187 GTAAGACATGTCTGGGACATGCA
1 GTAAGACATGTCTGGGACATGCA
72506210 ACGACTATGA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
46 43 0.68
47 14 0.22
48 6 0.10
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATTGGCATCGAGACGTAAGCCAGT
Found at i:72509541 original size:13 final size:13
Alignment explanation
Indices: 72509523--72509547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72509513 GTTGTTTATT
72509523 AAACTAATTAACA
1 AAACTAATTAACA
72509536 AAACTAATTAAC
1 AAACTAATTAAC
72509548 TAATTAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (13 bp):
AAACTAATTAACA
Found at i:72513835 original size:29 final size:28
Alignment explanation
Indices: 72513799--72513876 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
72513789 TCATGAGATT
72513799 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
72513829 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
72513856 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
72513877 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:72514094 original size:174 final size:174
Alignment explanation
Indices: 72513829--72514156 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
72513819 AAATTGTACA
*
72513829 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
72513894 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
72513959 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
72514003 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
72514068 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
72514133 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
72514157 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:72521966 original size:40 final size:39
Alignment explanation
Indices: 72521935--72522144 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
72521925 GGACTAAGAT
* *
72521935 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
72521975 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
72522015 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
72522055 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
72522095 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
72522134 CCGAAGGCATT
1 CCGAAGGCATT
72522145 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:72522098 original size:120 final size:120
Alignment explanation
Indices: 72521882--72522144 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
72521872 TTGAATGCTG
* *
72521882 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
72521946 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
72522002 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
72522065 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
72522121 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72522145 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:72522164 original size:79 final size:80
Alignment explanation
Indices: 72521935--72522179 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
72521925 GGACTAAGAT
* * * * * * * ** *
72521935 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
72521998 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
72522015 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
72522080 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
72522095 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
72522159 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
72522173 CCGAAGG
1 CCGAAGG
72522180 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:72526213 original size:30 final size:30
Alignment explanation
Indices: 72526156--72526213 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
72526146 TTTTTGAGCC
* * **
72526156 TAGGGGTAGAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
72526186 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
72526214 ATATGAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:72528974 original size:15 final size:16
Alignment explanation
Indices: 72528956--72528985 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72528946 CTGTAAAGAT
72528956 TATACATT-TCATATA
1 TATACATTCTCATATA
72528971 TATACATTCTCATAT
1 TATACATTCTCATAT
72528986 CTCGTACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.47
Consensus pattern (16 bp):
TATACATTCTCATATA
Found at i:72529154 original size:42 final size:42
Alignment explanation
Indices: 72529107--72529204 Score: 112
Period size: 42 Copynumber: 2.3 Consensus size: 42
72529097 CTCGACAGGT
* *
72529107 TCTTACACGAAATCAGATACGATTCCAATG-CCCTAGACATGG
1 TCTTACACGAAATCAGATACGATGCAAATGTCCC-AGACATGG
*
72529149 TCTTACAC-ATAATTAGATACGATGCAAATGTCCCAGACATGG
1 TCTTACACGA-AATCAGATACGATGCAAATGTCCCAGACATGG
*
72529191 T-ATACACGTAAATC
1 TCTTACACG-AAATC
72529205 TCAAATCGAG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
41 6 0.13
42 37 0.79
43 4 0.09
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (42 bp):
TCTTACACGAAATCAGATACGATGCAAATGTCCCAGACATGG
Found at i:72537079 original size:26 final size:26
Alignment explanation
Indices: 72537050--72537099 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
72537040 ATGTCCCCAC
*
72537050 AGGGCATCTTGAGCATGCTAAGTAAT
1 AGGGCATCTCGAGCATGCTAAGTAAT
72537076 AGGGCATCTCGAGCATGCTAAGTA
1 AGGGCATCTCGAGCATGCTAAGTA
72537100 TGAGGATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (26 bp):
AGGGCATCTCGAGCATGCTAAGTAAT
Found at i:72542605 original size:39 final size:40
Alignment explanation
Indices: 72542510--72542732 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
72542500 TTGAATGATG
*
72542510 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
72542548 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
72542589 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72542628 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
72542667 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
72542706 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
72542733 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:72542696 original size:79 final size:81
Alignment explanation
Indices: 72542510--72542732 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
72542500 TTGAATGATG
* * *
72542510 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
72542572 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
72542589 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
72542650 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
72542667 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
72542731 TG
66 TG
72542733 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:72542754 original size:79 final size:79
Alignment explanation
Indices: 72542510--72542765 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
72542500 TTGAATGATG
* * * *
72542510 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
72542571 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
72542589 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
72542653 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
72542667 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
72542730 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
72542747 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72542766 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:72545000 original size:40 final size:40
Alignment explanation
Indices: 72544945--72545221 Score: 430
Period size: 40 Copynumber: 6.9 Consensus size: 40
72544935 GCATGAGCAT
72544945 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
72544985 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
72545025 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
72545065 TTGATATATCCGGGCTAAAACCTGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
72545105 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
72545145 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
72545185 TTGCTAT-GCCGGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCC-GGGCTAAGACCCGAAGGCATTTGTGC
72545222 TTGCGGTTAT
Statistics
Matches: 218, Mismatches: 18, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 216 0.99
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:72547656 original size:47 final size:45
Alignment explanation
Indices: 72547452--72547810 Score: 228
Period size: 47 Copynumber: 7.6 Consensus size: 45
72547442 TTGTCGATTC
* * *
72547452 CATGTCCCATACATGGTCTTACACTGGCTATCTTCATTGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTACCATC-TT-AGGCCGATG
* * * * * * * *
72547500 CCATGTCCTAGACGTGGTCTTACAGTAGCT-CTCGTGTATAAGTACTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTAC-CATCT-T-AG-GCCGATG
* * * *
72547550 CATGTCCCAAACATGTCTTACACTAGC-ACGAAGCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTAC-CATCTTAGGCCGATG
*
72547594 CATGTCCCAAACATGTCTTACACTGGCTACCATCATTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTACCATC-TT-AGGCCGATG
* *
72547641 CATGTCCCTGACATGTCTTACACTGGC-ACTCATCTCTATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTAC-CATCT-TAGGCCGATG
* * * *
72547687 CCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGT-GGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTACCAT-CT-TAGGCCGATG
* * * *
72547735 CATGTCCCAGACACGTCTTACACTAGCCCT-CC-TCTTAATGTCGATGG
1 CATGTCCCAGACATGTCTTACACT-G-GCTACCATCTT-AGGCCGAT-G
72547782 CATGTCCCAGACATGGTCTTACACTGGCT
1 CATGTCCCAGACAT-GTCTTACACTGGCT
72547811 CTCACATCAC
Statistics
Matches: 246, Mismatches: 44, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
44 34 0.14
45 5 0.02
46 30 0.12
47 81 0.33
48 48 0.20
49 43 0.17
50 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTACCATCTTAGGCCGATG
Found at i:72547735 original size:141 final size:138
Alignment explanation
Indices: 72547452--72547814 Score: 344
Period size: 141 Copynumber: 2.6 Consensus size: 138
72547442 TTGTCGATTC
* * *
72547452 CATGTCCCATACATGGTCTTACACTGGCTATCTTCATTGAGGCCGATGCCATGT-CCTAGACGTG
1 CATGTCCCAAACAT-GTCTTACACTGGCTA-CCTCATTGAGGCCGATG-CATGTCCCT-GACATG
* * * * *
72547516 GTCTTACAGTAGCTCTCGTGTATAAGTACTGATGCATGTCCCAAACATGTCTTACACTAGCACGA
62 GTCTTACACTGGCTCTCATCTATAAGTACCGATGCATGTCCCAAACATGTCTTACACTAGCACGA
72547581 AGCTTAGCCGATG
127 AGC-TAGCCGATG
72547594 CATGTCCCAAACATGTCTTACACTGGCTACCATCATTGAGGCCGATGCATGTCCCTGACAT-GTC
1 CATGTCCCAAACATGTCTTACACTGGCTACC-TCATTGAGGCCGATGCATGTCCCTGACATGGTC
* * * * *
72547658 TTACACTGGCACTCATCTCT-A-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCG
65 TTACACTGGCTCTCATCTATAAGTACCGATG-CATGTCCCAAACAT-GTCTTACACTAGC-A-CG
* *
72547721 TAATG-TGGCTGATG
126 -AA-GCTAGCCGATG
* * * * * * *
72547735 CATGTCCCAGACACGTCTTACACTAGCCCT-CCTC-TTAATGTCGATGGCATGTCCCAGACATGG
1 CATGTCCCAAACATGTCTTACACT-G-GCTACCTCATTGAGGCCGAT-GCATGTCCCTGACATGG
72547798 TCTTACACTGGCTCTCA
63 TCTTACACTGGCTCTCA
72547815 CATCACTCAA
Statistics
Matches: 186, Mismatches: 23, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
137 6 0.03
138 14 0.08
139 29 0.16
140 19 0.10
141 80 0.43
142 35 0.19
143 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (138 bp):
CATGTCCCAAACATGTCTTACACTGGCTACCTCATTGAGGCCGATGCATGTCCCTGACATGGTCT
TACACTGGCTCTCATCTATAAGTACCGATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCT
AGCCGATG
Found at i:72547739 original size:94 final size:93
Alignment explanation
Indices: 72547452--72547810 Score: 341
Period size: 94 Copynumber: 3.8 Consensus size: 93
72547442 TTGTCGATTC
* * * * * *
72547452 CATGTCCCATACATGGTCTTACACTGGCTATCTTCAT-TGAGGCCGATGCCATGTCCTAGACGTG
1 CATGTCCCAGACAT-GTCTTACACTAGC-A-C-TCATCTTATGCCGATGCCATGTCCCAGACATG
* * * * *
72547516 GTCTTACAGTAGCTCTCGTGTATAAGT-ACTGATG
62 GTCTTACACTGGCTATC--GTA-ATGTGGCTGATG
* ** * *
72547550 CATGTCCCAAACATGTCTTACACTAGCACGAAGCTTA-GCCGATG-CATGTCCCAAACAT-GTCT
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTTATGCCGATGCCATGTCCCAGACATGGTCT
* * * * *
72547612 TACACTGGCTACCATCATTGAGGCCGATG
66 TACACTGGCTATCGT-AATGTGGCTGATG
* *
72547641 CATGTCCCTGACATGTCTTACACTGGCACTCATCTCTATGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCT-TATGCCGATGCCATGTCCCAGACATGGTC
72547706 TTACACTGGCTATCGTAATGTGGCTGATG
65 TTACACTGGCTATCGTAATGTGGCTGATG
* * * * *
72547735 CATGTCCCAGACACGTCTTACACTAGCCCTCCTCTTAATGTCGATGGCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTT-ATGCCGATGCCATGTCCCAGACATGGTC
72547800 TTACACTGGCT
65 TTACACTGGCT
72547811 CTCACATCAC
Statistics
Matches: 215, Mismatches: 38, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
90 2 0.01
91 35 0.16
92 15 0.07
93 19 0.09
94 98 0.46
95 20 0.09
96 1 0.00
97 12 0.06
98 13 0.06
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTTATGCCGATGCCATGTCCCAGACATGGTCT
TACACTGGCTATCGTAATGTGGCTGATG
Found at i:72552776 original size:39 final size:39
Alignment explanation
Indices: 72552733--72553603 Score: 1620
Period size: 39 Copynumber: 22.3 Consensus size: 39
72552723 ACTAAGATCC
72552733 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72552772 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72552811 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72552850 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72552889 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72552928 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72552967 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553006 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553045 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553084 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553123 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553162 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553201 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553240 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553279 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553318 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553357 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553396 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
72553435 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
*
72553474 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
* * * *
72553513 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCA
* * *
72553553 GAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCA
72553593 GAAGGCATTTG
1 GAAGGCATTTG
72553604 AACGAGGAGC
Statistics
Matches: 820, Mismatches: 9, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
39 774 0.94
40 46 0.06
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCA
Found at i:72555873 original size:40 final size:40
Alignment explanation
Indices: 72555816--72556691 Score: 1630
Period size: 40 Copynumber: 21.9 Consensus size: 40
72555806 GCATGAGCAT
* *
72555816 TTGATATATCCGTGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
* *
72555856 TTGATATATCCGGGCTAAAACCTGAAGGCATTTGTGCA-AG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTG-AGAG
72555896 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72555936 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72555976 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556016 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556056 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556096 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556136 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556176 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556216 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556256 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556296 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556336 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556376 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556416 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556456 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556496 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556536 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
72556576 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
* *
72556616 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
* * * *
72556656 TTGCTAT-GCCGGGGTTAAGACCCGAAGGCAATTGTG
1 TTGATATATCC-GGGCTAAGACCCGAAGGCATTTGTG
72556692 CTTGCGGTTA
Statistics
Matches: 820, Mismatches: 13, Indels: 6
0.98 0.02 0.01
Matches are distributed among these distances:
39 3 0.00
40 817 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
Found at i:72558143 original size:55 final size:55
Alignment explanation
Indices: 72558084--72558885 Score: 1595
Period size: 55 Copynumber: 14.6 Consensus size: 55
72558074 GACACACACT
72558084 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558139 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558194 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558249 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558304 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558359 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558414 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558469 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558524 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558579 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558634 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558689 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558744 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
72558799 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
1 CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
*
72558854 CGTGTGGCCTACCCGTGGACAATACTGACTTA
1 CGTGTGGCCTACCCGTGGACAATACTTACTTA
72558886 AAAGTTTAAG
Statistics
Matches: 746, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 746 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (55 bp):
CGTGTGGCCTACCCGTGGACAATACTTACTTATAGATACAGCTATGGCACACGCC
Found at i:72559783 original size:44 final size:44
Alignment explanation
Indices: 72559732--72560551 Score: 1640
Period size: 44 Copynumber: 18.6 Consensus size: 44
72559722 TATAAGTACT
72559732 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72559776 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72559820 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72559864 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72559908 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72559952 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72559996 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560040 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560084 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560128 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560172 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560216 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560260 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560304 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560348 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560392 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560436 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560480 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
72560524 GATGCATGTCCCAAACATGTCTTACACT
1 GATGCATGTCCCAAACATGTCTTACACT
72560552 GGCTCTCACA
Statistics
Matches: 776, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 776 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (44 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
Found at i:72565068 original size:157 final size:157
Alignment explanation
Indices: 72564782--72565094 Score: 599
Period size: 157 Copynumber: 2.0 Consensus size: 157
72564772 ATTAATTCTT
72564782 AAGATTTATGGATATTGTTCTTGTTATATCGCTTGGTTACTCGGACATGATTTCGATGATTGAAC
1 AAGATTTATGGATATTGTTCTTGTTATATCGCTTGGTTACTCGGACATGATTTCGATGATTGAAC
* *
72564847 TATCATTGTGGTCATTTTGAGGTTTATTTGATGAGGTATTAGTTACATGTTGAATGATTTATGAT
66 TATCATTGTGGTCATTTTGAGGTTTATTTGACGAGGTATTAGTTACATGCTGAATGATTTATGAT
72564912 TGAGATGGATTATTTGCCTTATTATGC
131 TGAGATGGATTATTTGCCTTATTATGC
72564939 AAGATTTATGGATATTGTTCTTGTTATATCGCTTGGTTACTCGGACATGATTTCGATGATTGAAC
1 AAGATTTATGGATATTGTTCTTGTTATATCGCTTGGTTACTCGGACATGATTTCGATGATTGAAC
*
72565004 TATCATTGTGGTCATTTTGATGTTTATTTGACGAGGTATTAGTTACATGCTGAATGATTTATGAT
66 TATCATTGTGGTCATTTTGAGGTTTATTTGACGAGGTATTAGTTACATGCTGAATGATTTATGAT
72565069 TGAGATGGATTATTTGCCTTATTATG
131 TGAGATGGATTATTTGCCTTATTATG
72565095 TTGTATTTTT
Statistics
Matches: 153, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.44
Consensus pattern (157 bp):
AAGATTTATGGATATTGTTCTTGTTATATCGCTTGGTTACTCGGACATGATTTCGATGATTGAAC
TATCATTGTGGTCATTTTGAGGTTTATTTGACGAGGTATTAGTTACATGCTGAATGATTTATGAT
TGAGATGGATTATTTGCCTTATTATGC
Found at i:72566173 original size:30 final size:32
Alignment explanation
Indices: 72566139--72566197 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
72566129 TTAATTTTTT
*
72566139 AAAATT-ATGACTAAA-TTGATATTATATGTA
1 AAAATTAAGGACTAAATTTGATATTATATGTA
*
72566169 AAAATTAAGGACTAAATTTGTTATTATAT
1 AAAATTAAGGACTAAATTTGATATTATAT
72566198 CAATTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.24
31 8 0.32
32 11 0.44
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (32 bp):
AAAATTAAGGACTAAATTTGATATTATATGTA
Found at i:72574459 original size:29 final size:29
Alignment explanation
Indices: 72574421--72574478 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
72574411 AGTTTTTGGT
72574421 GAATATTATGAAAATGACATGATTTGGAA
1 GAATATTATGAAAATGACATGATTTGGAA
72574450 GAATATTATGAAAATGACATGATTTGGAA
1 GAATATTATGAAAATGACATGATTTGGAA
72574479 TAAGTCATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.31
Consensus pattern (29 bp):
GAATATTATGAAAATGACATGATTTGGAA
Found at i:72579247 original size:18 final size:18
Alignment explanation
Indices: 72579226--72579260 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72579216 TAACCAACCA
72579226 AACCGATCTAATTCAGTT
1 AACCGATCTAATTCAGTT
* *
72579244 AACCGGTCTAGTTCAGT
1 AACCGATCTAATTCAGT
72579261 CGGAGGTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (18 bp):
AACCGATCTAATTCAGTT
Found at i:72584292 original size:40 final size:40
Alignment explanation
Indices: 72584198--72584422 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
72584188 TATTCGAATG
*
72584198 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
72584239 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
72584279 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
72584319 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
72584359 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
72584399 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
72584423 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:72584378 original size:80 final size:80
Alignment explanation
Indices: 72584198--72584458 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
72584188 TATTCGAATG
* * * *
72584198 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
72584263 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
72584279 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
72584344 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
72584359 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
72584424 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
72584438 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72584459 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:72584412 original size:120 final size:120
Alignment explanation
Indices: 72584198--72584458 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
72584188 TATTCGAATG
* * *
72584198 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
72584263 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
72584319 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
72584382 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
72584438 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
72584459 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:72592433 original size:40 final size:40
Alignment explanation
Indices: 72592339--72592563 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
72592329 TATTCGAATG
*
72592339 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
72592380 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
72592420 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
72592460 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
72592500 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
72592540 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
72592564 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:72592519 original size:80 final size:80
Alignment explanation
Indices: 72592339--72592599 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
72592329 TATTCGAATG
* * * *
72592339 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
72592404 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
72592420 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
72592485 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
72592500 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
72592565 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
72592579 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72592600 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:72592553 original size:120 final size:120
Alignment explanation
Indices: 72592339--72592599 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
72592329 TATTCGAATG
* * *
72592339 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
72592404 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
72592460 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
72592523 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
72592579 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
72592600 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:72597333 original size:110 final size:110
Alignment explanation
Indices: 72597193--72597965 Score: 1037
Period size: 110 Copynumber: 7.1 Consensus size: 110
72597183 GATACATAAT
* *
72597193 TTCATGTATCGTGATCTTTCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAGTA
1 TTCATGTATCGTGATCTTCCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
*
72597258 CAGACATATCATGCCATGGGTCTGAACCACATGGTCTTACACACA
66 CAGACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACA
* * * * *
72597303 TTCATTTATCATGATCTTCCATTTCGATTCATA-ACTATCGAAGCCTACATCATGAATATAAATA
1 TTCATGTATCGTGATCTTCCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * * **
72597367 CA-AGTATATCATGCTATGGTTCTTAACCACATGGTCTTACATGCA
66 CAGA-CATATCATGCCATGGGTCTTAACCACATGGTCTTACACACA
* * * * * * *
72597412 TTCATATATCATGATATGCTATTTTGATTCATACACTA-C---TGCTACACCATGAATATAAGTA
1 TTCATGTATCGTGATCTTCCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * *
72597473 CAGACATATCATGCCATGGGTCTTAACCACATGATCTTGCACATA
66 CAGACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACA
* * * *
72597518 TTCATTTATCGTGATCTTCAATTTTGATTCATACACTATCAAAGGCTACACCATGAAAATAAATA
1 TTCATGTATCGTGATCTTCCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * *
72597583 -TGAACATATCATGCTATGGTTCTTAACCACATGGTCTTACACACA
66 CAG-ACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACA
* *
72597628 TTCATGTATCGTGAT-TTACTATTTTGATTCATACACTATCGAAGGCTACACCATAAATATAAAT
1 TTCATGTATCGTGATCTT-CCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAAT
* * * *
72597692 ACAAACATATCATGCCATAGGTTTTAATCACATGGTCTTACACACA
65 ACAGACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACA
* *
72597738 TTCATGTATCGTGATCTAT-CATTTGGATTCATACACTATCGAAGGATACACCATGAATATAAAT
1 TTCATGTATCGTGATCT-TCCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAAT
* *
72597802 ATAGACATATCATGCCATGGGTCTTAATCACATGGTCTTACACACA
65 ACAGACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACA
* * *
72597848 TTCATGTATTGTGATCTGCCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
1 TTCATGTATCGTGATCTTCCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
72597913 CA-AGCATATCATGCCAT-GGTCTTAACCACATGGTCTTACACACA
66 CAGA-CATATCATGCCATGGGTCTTAACCACATGGTCTTACACACA
72597957 TTCATGTAT
1 TTCATGTAT
72597966 AATGATATGC
Statistics
Matches: 579, Mismatches: 70, Indels: 29
0.85 0.10 0.04
Matches are distributed among these distances:
106 86 0.15
107 2 0.00
108 1 0.00
109 133 0.23
110 355 0.61
111 1 0.00
112 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (110 bp):
TTCATGTATCGTGATCTTCCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
CAGACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACA
Found at i:72602317 original size:40 final size:40
Alignment explanation
Indices: 72602262--72602399 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
72602252 CGGATGGTAA
72602262 CCGGGCTAAGTCCCGAAGGCATTTGTG-GTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATA-T
*
72602302 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
72602342 CCGGGCTAAGTCCCGAAGGCATATGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
72602382 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72602400 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:72608872 original size:38 final size:38
Alignment explanation
Indices: 72608820--72608894 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
72608810 AAATCTAATG
* *
72608820 ATAATTCATCCAAAAATGTGCTAAGCATGGGATAAAAT
1 ATAATTAATCCAAAAATGTGCTAAGAATGGGATAAAAT
*
72608858 ATAATTAATTCAAAAATGTGCTAAGAATGGGATAAAA
1 ATAATTAATCCAAAAATGTGCTAAGAATGGGATAAAA
72608895 ATATGTATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (38 bp):
ATAATTAATCCAAAAATGTGCTAAGAATGGGATAAAAT
Found at i:72610747 original size:25 final size:26
Alignment explanation
Indices: 72610719--72610767 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
72610709 AAAGTAATTT
* *
72610719 AAAAATATAAATAA-AGATAAAAGGA
1 AAAAATAAAAATAATAAATAAAAGGA
72610744 AAAAATAAAAATAATAAATAAAAG
1 AAAAATAAAAATAATAAATAAAAG
72610768 TCTTCAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAAATAAAAATAATAAATAAAAGGA
Found at i:72611097 original size:13 final size:13
Alignment explanation
Indices: 72611079--72611103 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72611069 ATTGGTGCAA
72611079 CACGGCCGTGTCG
1 CACGGCCGTGTCG
72611092 CACGGCCGTGTC
1 CACGGCCGTGTC
72611104 CTGCTTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:72616643 original size:6 final size:6
Alignment explanation
Indices: 72616605--72616803 Score: 131
Period size: 6 Copynumber: 32.3 Consensus size: 6
72616595 AAGAAAAATT
* * *
72616605 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
72616653 ATCAG- GTGACAGA ATCAAA ATAAAA ATCAGA AACAGA ATTAGGTA A-CAGA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
72616703 ATCAAA ATCAGT ATCAGGTA A-GAGA ATCAGA ATCAGA ACCAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
72616752 ATCAGGTA A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
72616802 AT
1 AT
72616804 GTGTATGCAA
Statistics
Matches: 150, Mismatches: 26, Indels: 34
0.71 0.12 0.16
Matches are distributed among these distances:
5 10 0.07
6 119 0.79
7 14 0.09
8 7 0.05
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:72616719 original size:37 final size:37
Alignment explanation
Indices: 72616626--72616769 Score: 148
Period size: 37 Copynumber: 3.9 Consensus size: 37
72616616 AATCAAAATG
* *
72616626 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAAACAGAATCAGGTAAC
* * *
72616663 AGAATCAAAATAAAAATCAGAAACAGAATTAGGTAAC
1 AGAATCAAAATCAGAATCAGAAACAGAATCAGGTAAC
* * *
72616700 AGAATCAAAATCAGTATCAGGTAAGAGAATCA-G-AATC
1 AGAATCAAAATCAGAATCA-GAAACAGAATCAGGTAA-C
* * *
72616737 AGAACCAGAATCAGAATCAGGTAACAGAATCAG
1 AGAATCAAAATCAGAATCA-GAAACAGAATCAG
72616770 AATCAGTATC
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
36 2 0.02
37 78 0.88
38 9 0.10
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.16
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAAACAGAATCAGGTAAC
Found at i:72616770 original size:37 final size:37
Alignment explanation
Indices: 72616614--72616775 Score: 127
Period size: 37 Copynumber: 4.4 Consensus size: 37
72616604 TATCAGAACT
* * *
72616614 AGAATCAAAATGAGAATCAAAATCAGAATCA-G-AATC
1 AGAATCAGAATCAGAACCAAAATCAGAATCAGGTAA-C
* * * * *
72616650 AGAATCAG-GTGACAGAATCAAAATAAAAATCA-GAAAC
1 AGAATCAGAAT--CAGAACCAAAATCAGAATCAGGTAAC
* * * *
72616687 AGAATTAGGTAA-CAGAATCAAAATCAGTATCAGGTAAG
1 AGAATCA-G-AATCAGAACCAAAATCAGAATCAGGTAAC
*
72616725 AGAATCAGAATCAGAACCAGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGAACCAAAATCAGAATCAGGTAAC
72616762 AGAATCAGAATCAG
1 AGAATCAGAATCAG
72616776 TATCAGGTAA
Statistics
Matches: 101, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
35 1 0.01
36 9 0.09
37 79 0.78
38 12 0.12
ACGTcount: A:0.52, C:0.14, G:0.18, T:0.16
Consensus pattern (37 bp):
AGAATCAGAATCAGAACCAAAATCAGAATCAGGTAAC
Found at i:72616794 original size:19 final size:19
Alignment explanation
Indices: 72616626--72616775 Score: 96
Period size: 19 Copynumber: 7.7 Consensus size: 19
72616616 AATCAAAATG
*
72616626 AGAATCAAAATCA-G-AATC
1 AGAATCAGAATCAGGTAA-C
*
72616644 AGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
* **
72616663 AGAATCAAAAT-A-AAAATC
1 AGAATCAGAATCAGGTAA-C
* *
72616681 AGAAACAGAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
* *
72616700 AGAATCAAAATCAGTATCAGGTAAG
1 AG------AATCAGAATCAGGTAAC
72616725 AGAATCAGAATCA-G-AACC
1 AGAATCAGAATCAGGTAA-C
72616743 AGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGGTAAC
72616762 AGAATCAGAATCAG
1 AGAATCAGAATCAG
72616776 TATCAGGTAA
Statistics
Matches: 102, Mismatches: 16, Indels: 27
0.70 0.11 0.19
Matches are distributed among these distances:
17 3 0.03
18 37 0.36
19 42 0.41
20 5 0.05
25 15 0.15
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.16
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:72616794 original size:62 final size:62
Alignment explanation
Indices: 72616637--72616802 Score: 242
Period size: 62 Copynumber: 2.7 Consensus size: 62
72616627 GAATCAAAAT
* * * * * * *
72616637 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATAAAAATCAGAAACAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAAACAGAATCAGGTAA
* * *
72616699 CAGAATCAAAATCAGTATCAGGTAAGAGAATCAGAATCAGAACCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAAACAGAATCAGGTAA
72616761 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
72616803 TGTGTATGCA
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 92 1.00
ACGTcount: A:0.50, C:0.15, G:0.19, T:0.16
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAAACAGAATCAGGTAA
Found at i:72616795 original size:25 final size:25
Alignment explanation
Indices: 72616637--72616803 Score: 132
Period size: 25 Copynumber: 6.7 Consensus size: 25
72616627 GAATCAAAAT
*
72616637 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* * * *
72616662 CAGAATCAAAATAAAAATCA-GAAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
72616686 CAGAATTAGGTAA-CAGAATCA--AAA
1 CAGAATCA-G-AATCAGAATCAGGTAA
* *
72616710 TCAGTATCAGGTAA-GAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
*
72616735 TCAGAACCAGAATCAGAATCAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
*
72616761 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
72616786 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
72616804 GTGTATGCAA
Statistics
Matches: 117, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.02
24 20 0.17
25 91 0.78
26 4 0.03
ACGTcount: A:0.50, C:0.15, G:0.19, T:0.17
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:72616970 original size:27 final size:26
Alignment explanation
Indices: 72616922--72616981 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
72616912 ACGAGGCTGC
*
72616922 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
72616949 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
72616975 CAAATAT
1 CAGATAT
72616982 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72617375 original size:54 final size:52
Alignment explanation
Indices: 72617316--72617502 Score: 223
Period size: 54 Copynumber: 3.5 Consensus size: 52
72617306 GGGGTAAAAT
* * *
72617316 GGTAATTTTACCCCACAAGGGTATCTCTGTAATTCTACCTTACAGGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTAT-TTTGTAATTCTACCTTACAGG-GTATTTC
* * *
72617370 AGTAATTCTACCCTACAGGGGTATTTTGATATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTG-TAATTCTACCTTAC-AGGGTATTTC
* *
72617424 GGTAATTCTACCTTACAAGGGTATTTTAGTAATTCT-CCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAAGGGTATTTT-GTAATTCTACCTTACAGGG-TATTTC
* *
72617477 GGTATTTCTTCCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
72617503 CAGTATTTCA
Statistics
Matches: 115, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
52 4 0.03
53 37 0.32
54 70 0.61
55 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (52 bp):
GGTAATTCTACCCTACAAGGGTATTTTGTAATTCTACCTTACAGGGTATTTC
Found at i:72617440 original size:81 final size:80
Alignment explanation
Indices: 72617320--72617503 Score: 255
Period size: 81 Copynumber: 2.3 Consensus size: 80
72617310 TAAAATGGTA
* * *
72617320 ATTT-TACCCCACAAGGGTATCTCTGTAATTCTACCTTAC-AGGAGTATTTCAGTAATTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAAGG-GTATTTCAGTAATTCT-CCC
* *
72617383 TACAGGGGTATTTTGAT
64 TACAGGGATATTTCGAT
* *
72617400 ATTTCTACCTTACAAGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTTAGTAATTCTCCCTA
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTCCCTA
*
72617465 CAGGGATATTTCGGT
66 CAGGGATATTTCGAT
*
72617480 ATTTCTTCCCTACAAGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
72617504 AGTATTTCAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 43 0.47
81 46 0.50
82 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (80 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTCCCTA
CAGGGATATTTCGAT
Found at i:72617511 original size:27 final size:27
Alignment explanation
Indices: 72617317--72617507 Score: 192
Period size: 27 Copynumber: 7.1 Consensus size: 27
72617307 GGGTAAAATG
* * * *
72617317 GTAATTTTACCCCACAAGGGTATCTCT
1 GTAATTCTACCCTACAAGGGTATTTCA
*
72617344 GTAATTCTACCTTAC-AGGAGTATTTCA
1 GTAATTCTACCCTACAAGG-GTATTTCA
* *
72617371 GTAATTCTACCCTACAGGGGTATTT-T
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
72617397 GATATTTCTACCTTACAAGGGTATTTCG
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
72617425 GTAATTCTACCTTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
72617452 GTAATTCT-CCCTAC-AGGGATATTTCG
1 GTAATTCTACCCTACAAGGG-TATTTCA
* *
72617478 GTATTTCTTCCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
72617505 GTA
1 GTA
72617508 TTTCAGTATT
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
25 4 0.03
26 21 0.15
27 105 0.77
28 7 0.05
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:72617517 original size:35 final size:35
Alignment explanation
Indices: 72617471--72617538 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
72617461 CCTACAGGGA
* *
72617471 TATTTCGGTATTTCTTCCCTACAAGGGTATTTCAG
1 TATTTCAGTATTTCTACCCTACAAGGGTATTTCAG
* *
72617506 TATTTCAGTATTTCTACCCTATAGGGGTATTTC
1 TATTTCAGTATTTCTACCCTACAAGGGTATTTC
72617539 GGTAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (35 bp):
TATTTCAGTATTTCTACCCTACAAGGGTATTTCAG
Found at i:72617560 original size:27 final size:27
Alignment explanation
Indices: 72617528--72617785 Score: 148
Period size: 27 Copynumber: 9.6 Consensus size: 27
72617518 TCTACCCTAT
72617528 AGGGGTATTTCGGTAATTTTACAATTCG
1 AGGGGTATTTCGGTAATTTTACAA-TCG
** *
72617556 A-GGGTATTTCAATAA-TTTACAGGTCG
1 AGGGGTATTTCGGTAATTTTACA-ATCG
* *
72617582 A-GGGTATTTCAGTAATTTCACAAATC-
1 AGGGGTATTTCGGTAATTTTAC-AATCG
* * * *
72617608 AGGGGTATTTTGGTAATTTCACAAACT
1 AGGGGTATTTCGGTAATTTTACAATCG
* * * *
72617635 AGGGGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTCGGTAATTTTACAATCG
* * * *
72617662 AGGGGTATTTTGGTAATTTTATAAACA
1 AGGGGTATTTCGGTAATTTTACAATCG
* * * * *
72617689 AAGGGTATATT-AGTAATTTTATAAACC
1 AGGGGTAT-TTCGGTAATTTTACAATCG
* ** * *
72617716 AGGGGGTATTTTGGTAATTTTGTAAACC
1 A-GGGGTATTTCGGTAATTTTACAATCG
* * * *
72617744 AAGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTCGGTAATTTTACAATCG
*
72617771 AGGGGTATTTTGGTA
1 AGGGGTATTTCGGTA
72617786 GTTTGGTAAA
Statistics
Matches: 197, Mismatches: 25, Indels: 17
0.82 0.10 0.07
Matches are distributed among these distances:
26 27 0.14
27 145 0.74
28 25 0.13
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACAATCG
Found at i:72617625 original size:53 final size:54
Alignment explanation
Indices: 72617528--72617785 Score: 211
Period size: 54 Copynumber: 4.8 Consensus size: 54
72617518 TCTACCCTAT
* * *** **
72617528 AGGGGTATTTCGGTAATTTTACAATTC-GAGGGTATTTCAATAATTT-ACAGGTCG
1 AGGGGTATTTCAGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTCACA-AACG
* *
72617582 A-GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACT
1 AGGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTCACAAACG
* * * * *
72617635 AGGGGTATTT-TGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACA
1 AGGGGTATTTCAG-TAATTTTACAAATCAGGGGTATTTTGGTAATTTCACAAACG
* * * *** *
72617689 AAGGGTATATT-AGTAATTTTATAAACCAGGGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTAT-TTCAGTAATTTTACAAATCA-GGGGTATTTTGGTAATTTCACAAACG
* ** *
72617744 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTA
1 AGGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTA
72617786 GTTTGGTAAA
Statistics
Matches: 175, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
53 39 0.22
54 86 0.49
55 50 0.29
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTCACAAACG
Found at i:72617796 original size:27 final size:27
Alignment explanation
Indices: 72617583--72617785 Score: 244
Period size: 27 Copynumber: 7.5 Consensus size: 27
72617573 TACAGGTCGA
** * * *
72617583 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
72617610 GGGTATTTTGGTAATTTCACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
72617637 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
72617664 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
72617691 GGGTATATTAGTAATTTTATAAACCAGG
1 GGGTATTTTGGTAATTTTATAAACCA-G
* *
72617719 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
*
72617746 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
72617773 GGGTATTTTGGTA
1 GGGTATTTTGGTA
72617786 GTTTGGTAAA
Statistics
Matches: 153, Mismatches: 22, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
27 130 0.85
28 23 0.15
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:72617796 original size:109 final size:109
Alignment explanation
Indices: 72617582--72617801 Score: 300
Period size: 109 Copynumber: 2.0 Consensus size: 109
72617572 TTACAGGTCG
* * *
72617582 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTG
1 AGGGTATTTCAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTG
*
72617647 ATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC-AA
66 ATAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAACTAA
* * ***
72617690 AGGGTATATT-AGTAATTTTATAAACCAGGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 AGGGTAT-TTCAGTAATTTCACAAACCA-GGGGTATTTTGGTAATTTCACAAACCAAGGGTATTT
* * *
72617754 TGGTAATTTTACAAACCAGGGGTATTTTGGTAGTTTGGTAAACTAA
64 TGATAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAACTAA
72617800 AG
1 AG
72617802 TATTCTATAC
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
108 21 0.22
109 72 0.74
110 4 0.04
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (109 bp):
AGGGTATTTCAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTG
ATAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAACTAA
Found at i:72637071 original size:13 final size:13
Alignment explanation
Indices: 72637053--72637081 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72637043 TTTAGTTTAA
72637053 TTAGTTAATTAGT
1 TTAGTTAATTAGT
72637066 TTAGTTAATTAGT
1 TTAGTTAATTAGT
72637079 TTA
1 TTA
72637082 ATAAATAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:72639696 original size:40 final size:40
Alignment explanation
Indices: 72639641--72640552 Score: 1684
Period size: 40 Copynumber: 22.8 Consensus size: 40
72639631 ATTTGAATGA
72639641 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72639681 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72639721 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72639761 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72639801 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72639841 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72639881 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72639921 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72639961 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640001 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640041 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640081 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640121 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640161 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640201 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640241 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640281 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640321 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640361 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
72640401 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
* * *
72640441 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
* * * * *
72640482 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
* * * *
72640522 G-CCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCT
72640553 TGTGGTAATA
Statistics
Matches: 860, Mismatches: 10, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
40 855 0.99
41 5 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (40 bp):
GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
Found at i:72652810 original size:30 final size:30
Alignment explanation
Indices: 72652776--72652836 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72652766 TCCTTAACTC
72652776 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
72652806 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
72652836 A
1 A
72652837 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:72667948 original size:42 final size:42
Alignment explanation
Indices: 72667902--72668015 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
72667892 ACTAAGACTA
* *
72667902 TGTGTAAGGCCATATCTGGGATATGGCATCATTATAAGATTT
1 TGTGTAAGACCATATCTGGGATATGGCATCAATATAAGATTT
* * *
72667944 TGTGTAAGACCATAGT-TGCGCCAT-TGCCATCAATATGAGATTT
1 TGTGTAAGACCATA-TCTG-G-GATATGGCATCAATATAAGATTT
**
72667987 CATGTAAGACCATATCTGGGATATGGCAT
1 TGTGTAAGACCATATCTGGGATATGGCAT
72668016 TAGTATGATA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
41 2 0.03
42 22 0.38
43 32 0.55
44 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
TGTGTAAGACCATATCTGGGATATGGCATCAATATAAGATTT
Found at i:72673808 original size:30 final size:30
Alignment explanation
Indices: 72673774--72673831 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
72673764 CTTGACATTT
72673774 CCACACGGGCTGGCCACACACCCATGTGAG
1 CCACACGGGCTGGCCACACACCCATGTGAG
* *
72673804 CCACACGGGCTGGCCACACGCCTATGTG
1 CCACACGGGCTGGCCACACACCCATGTG
72673832 CCAGCTCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.21, C:0.40, G:0.28, T:0.12
Consensus pattern (30 bp):
CCACACGGGCTGGCCACACACCCATGTGAG
Found at i:72682110 original size:38 final size:37
Alignment explanation
Indices: 72682059--72682134 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 37
72682049 GTAGTTATGC
*
72682059 TCCACAGGAAATAGGCGTCATAAGTACTAACCGCTCT
1 TCCACAGGAAATAGGCGTCATAAGAACTAACCGCTCT
72682096 NTCCACAGGAAATAGGCGTCATAAGAACTAACCGCTCT
1 -TCCACAGGAAATAGGCGTCATAAGAACTAACCGCTCT
72682134 T
1 T
72682135 GTGCTCTCCT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 1 0.03
38 36 0.97
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.21
Consensus pattern (37 bp):
TCCACAGGAAATAGGCGTCATAAGAACTAACCGCTCT
Found at i:72683286 original size:19 final size:19
Alignment explanation
Indices: 72683239--72683289 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
72683229 AATAAACAAT
*
72683239 ATAAATAAAATG-AAATAA
1 ATAAATAAAAAGAAAATAA
* * *
72683257 AGATATGAAAAGAAAATAA
1 ATAAATAAAAAGAAAATAA
72683276 ATAAATAAAAAGAA
1 ATAAATAAAAAGAA
72683290 TGAGGGACAA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.18
Consensus pattern (19 bp):
ATAAATAAAAAGAAAATAA
Found at i:72684142 original size:13 final size:13
Alignment explanation
Indices: 72684132--72684158 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72684122 GCCCGTGTGT
72684132 CCAGGCCGTGTAA
1 CCAGGCCGTGTAA
72684145 CCAGGCCGTGTAA
1 CCAGGCCGTGTAA
72684158 C
1 C
72684159 ACACTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CCAGGCCGTGTAA
Found at i:72694500 original size:10 final size:9
Alignment explanation
Indices: 72694485--72694548 Score: 60
Period size: 8 Copynumber: 6.9 Consensus size: 9
72694475 TCACCCCATT
72694485 TTTATTTTA
1 TTTATTTTA
72694494 CTTTATTTTA
1 -TTTATTTTA
72694504 TGTTATTTATTA
1 T-TTA-TT-TTA
72694516 TTTATTTTA
1 TTTATTTTA
* *
72694525 -CTATTTTT
1 TTTATTTTA
72694533 TTTATTTT-
1 TTTATTTTA
72694541 TTTATTTT
1 TTTATTTT
72694549 TTATTATTCT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
8 14 0.30
9 10 0.21
10 14 0.30
11 5 0.11
12 4 0.09
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:72694521 original size:21 final size:19
Alignment explanation
Indices: 72694495--72694556 Score: 72
Period size: 21 Copynumber: 3.1 Consensus size: 19
72694485 TTTATTTTAC
72694495 TTTATTTTATGTTATTTATTA
1 TTTATTTTAT-TT-TTTATTA
*
72694516 TTTATTTTACTATTTTTTTTA
1 TTTATTTTA-T-TTTTTATTA
72694537 TTT-TTTTATTTTTTATTA
1 TTTATTTTATTTTTTATTA
72694555 TT
1 TT
72694557 CTTATACTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 10 0.27
19 1 0.03
20 5 0.14
21 18 0.49
22 3 0.08
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTATTTTATTTTTTATTA
Found at i:72694552 original size:32 final size:31
Alignment explanation
Indices: 72694483--72694553 Score: 90
Period size: 32 Copynumber: 2.3 Consensus size: 31
72694473 AATCACCCCA
72694483 TTTTTATTTTACTTTATTTTATGTTATTTAT
1 TTTTTATTTTACTTTATTTTATGTTATTTAT
* * *
72694514 TATTTATTTTACTATTTTTTTTAT-TTTTTTAT
1 TTTTTATTTTAC--TTTATTTTATGTTATTTAT
72694546 TTTTTATT
1 TTTTTATT
72694554 ATTCTTATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 11 0.32
32 14 0.41
33 9 0.26
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.77
Consensus pattern (31 bp):
TTTTTATTTTACTTTATTTTATGTTATTTAT
Found at i:72694710 original size:31 final size:32
Alignment explanation
Indices: 72694638--72694710 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 32
72694628 GAGCTTATTA
**
72694638 TTATTATTTTTGTTTTATTTTTTTATATTTCTT
1 TTATTA-TTTTGTTTTATTGCTTTATATTTCTT
*
72694671 TT-TAATTTTGTTTTAGTTGCTTTAT-TTT-TT
1 TTATTATTTTGTTTTA-TTGCTTTATATTTCTT
72694701 TTATTATTTT
1 TTATTATTTT
72694711 CTTTGACTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
30 4 0.12
31 19 0.56
32 9 0.26
33 2 0.06
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (32 bp):
TTATTATTTTGTTTTATTGCTTTATATTTCTT
Found at i:72695659 original size:17 final size:16
Alignment explanation
Indices: 72695637--72695668 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
72695627 CATTATTCTC
72695637 AAAAAAAAAGGAAAAAG
1 AAAAAAAAA-GAAAAAG
72695654 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
72695669 TATTTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:72698343 original size:25 final size:25
Alignment explanation
Indices: 72698315--72698374 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
72698305 GGTCTTTTTA
*
72698315 TTAAAAATTTCATCAATTTCTACTC
1 TTAAAAATTACATCAATTTCTACTC
72698340 TTAAAAATTACATCAATTTCTACTC
1 TTAAAAATTACATCAATTTCTACTC
72698365 TTAAAAATTA
1 TTAAAAATTA
72698375 TTCCATGTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (25 bp):
TTAAAAATTACATCAATTTCTACTC
Found at i:72704837 original size:43 final size:43
Alignment explanation
Indices: 72704790--72704871 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
72704780 TAGCCCAGCT
*
72704790 ATGGTCTTATA-GTAAATCAAATAACGATGCCAATGTCCCTGAC
1 ATGGTCTTACATGT-AATCAAATAACGATGCCAATGTCCCTGAC
** *
72704833 ATGGTCTTACATGTAATCGCATAATGATGCCAATGTCCC
1 ATGGTCTTACATGTAATCAAATAACGATGCCAATGTCCC
72704872 AGTCATGGCC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 32 0.94
44 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCAAATAACGATGCCAATGTCCCTGAC
Found at i:72704893 original size:43 final size:43
Alignment explanation
Indices: 72704810--72704893 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 43
72704800 AGTAAATCAA
* * * **
72704810 ATAACGATGCCAATGTCCCTGACATGGTCTTACATGTAATCGC
1 ATAACGATGCCAATGTCCCAGACATGGCCGTACACATAATCGC
* *
72704853 ATAATGATGCCAATGTCCCAGTCATGGCCGTACACATAATC
1 ATAACGATGCCAATGTCCCAGACATGGCCGTACACATAATC
72704894 ACATCTTATT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
ATAACGATGCCAATGTCCCAGACATGGCCGTACACATAATCGC
Found at i:72714453 original size:46 final size:46
Alignment explanation
Indices: 72714386--72714513 Score: 256
Period size: 46 Copynumber: 2.8 Consensus size: 46
72714376 AACTAGGCAT
72714386 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
72714432 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
72714478 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72714514 GCGGGTTACA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.27
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:72721501 original size:30 final size:30
Alignment explanation
Indices: 72721467--72721526 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
72721457 TTCCTGAGCC
* *
72721467 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* *
72721497 TAGGGGCAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
72721527 CATATGAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:72721999 original size:27 final size:27
Alignment explanation
Indices: 72721969--72722053 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
72721959 TTGAGTTGAG
*
72721969 TCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTGAGATGTAACTAGGCA
*
72721996 TCCGAGCTCGT-TGA-GT---T--G-A
1 TCCGAGCTCGTGAGATGTAACTAGGCA
*
72722015 GTCCGAGTTCGTGAGATGTAACTAGGCA
1 -TCCGAGCTCGTGAGATGTAACTAGGCA
72722043 TCCGAGCTCGT
1 TCCGAGCTCGT
72722054 TGAGTTGAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 18
0.66 0.07 0.27
Matches are distributed among these distances:
19 1 0.02
20 11 0.25
21 2 0.05
22 3 0.07
25 3 0.07
26 2 0.05
27 21 0.48
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (27 bp):
TCCGAGCTCGTGAGATGTAACTAGGCA
Found at i:72722018 original size:47 final size:47
Alignment explanation
Indices: 72721949--72722071 Score: 237
Period size: 47 Copynumber: 2.6 Consensus size: 47
72721939 ATGGTTGAGT
*
72721949 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
72721996 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
72722043 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
72722072 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:72726257 original size:22 final size:22
Alignment explanation
Indices: 72726229--72726293 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
72726219 TAACAAGACG
*
72726229 GCTCAACGTTGTAGACAGGACA
1 GCTCAACGTCGTAGACAGGACA
** *
72726251 GCTCAACAACGTAGACAGGAGTA
1 GCTCAACGTCGTAGACAGGA-CA
72726274 G-TCAACGTCGTAGACAGGAC
1 GCTCAACGTCGTAGACAGGAC
72726294 GGCTAAAGGC
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
22 33 0.94
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.28, T:0.15
Consensus pattern (22 bp):
GCTCAACGTCGTAGACAGGACA
Found at i:72729062 original size:55 final size:54
Alignment explanation
Indices: 72728992--72729112 Score: 133
Period size: 55 Copynumber: 2.3 Consensus size: 54
72728982 ATATGCAGCA
* * *
72728992 TGGC-TGCCA-CA-AACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTG
1 TGGCATGCCACCAGAACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTG
* * *
72729043 TGGCAGTGCCACCAGAACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTG
1 TGGCA-TGCCACCAGAACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTG
72729098 TGGCATAGCCACCAG
1 TGGCAT-GCCACCAG
72729113 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
51 4 0.07
53 5 0.09
54 3 0.05
55 30 0.52
56 16 0.28
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
TGGCATGCCACCAGAACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTG
Found at i:72729109 original size:28 final size:27
Alignment explanation
Indices: 72729023--72729112 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
72729013 GTGACAGAGT
*
72729023 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
72729052 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
72729079 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
72729107 CACCAG
1 CACCAG
72729113 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:72729265 original size:28 final size:28
Alignment explanation
Indices: 72729218--72729282 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
72729208 AAATTAACCT
*
72729218 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
72729246 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
72729274 TAGGGGTAT
1 TAGGGGTAT
72729283 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:72736404 original size:13 final size:13
Alignment explanation
Indices: 72736388--72736433 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
72736378 TTTTTTCATC
72736388 ATAATAAAATAAA
1 ATAATAAAATAAA
72736401 ATAATAAAAGTAAA
1 ATAATAAAA-TAAA
*
72736415 ACAA-AAACATAAA
1 ATAATAAA-ATAAA
72736428 A-AATAA
1 ATAATAA
72736434 TTAAAAGGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
12 2 0.07
13 19 0.66
14 8 0.28
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.17
Consensus pattern (13 bp):
ATAATAAAATAAA
Found at i:72736980 original size:28 final size:27
Alignment explanation
Indices: 72736894--72736983 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
72736884 GTGACAGAAT
*
72736894 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
72736923 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
72736950 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
72736978 CACCAG
1 CACCAG
72736984 GACACTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:72737136 original size:28 final size:28
Alignment explanation
Indices: 72737089--72737153 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
72737079 AAATTAACCC
*
72737089 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
72737117 TAGGGGTATAATGGTAATTTTGCATACT
1 TAGGGGTATAAAGGTAATTTTGCATACA
72737145 TAGGGGTAT
1 TAGGGGTAT
72737154 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.29, C:0.08, G:0.28, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:72738609 original size:56 final size:56
Alignment explanation
Indices: 72738523--72738633 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
72738513 TAAAAATTAT
72738523 TCACTGAATTTGCTGTCATTGTGACTTGAACCTGGGTCCTCCCCAAGCTTCCACAA
1 TCACTGAATTTGCTGTCATTGTGACTTGAACCTGGGTCCTCCCCAAGCTTCCACAA
*
72738579 TCACTTAATTTGCTGTCATTGTGACTTGAACCTGGGTCCTCCCCAAGCTTCCACA
1 TCACTGAATTTGCTGTCATTGTGACTTGAACCTGGGTCCTCCCCAAGCTTCCACA
72738634 CGCCACTAAC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.32
Consensus pattern (56 bp):
TCACTGAATTTGCTGTCATTGTGACTTGAACCTGGGTCCTCCCCAAGCTTCCACAA
Found at i:72739842 original size:17 final size:18
Alignment explanation
Indices: 72739817--72739850 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72739807 AAATTCATTC
72739817 TCTTGTAAAACATTATTA
1 TCTTGTAAAACATTATTA
*
72739835 TCTT-TAAAACTTTATT
1 TCTTGTAAAACATTATT
72739851 TGTTGTGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.12, G:0.03, T:0.50
Consensus pattern (18 bp):
TCTTGTAAAACATTATTA
Found at i:72742472 original size:43 final size:43
Alignment explanation
Indices: 72742308--72742474 Score: 171
Period size: 43 Copynumber: 3.9 Consensus size: 43
72742298 AGCTCTTACA
* * * ** * *
72742308 ATGCC-ATATCCCAGATATAGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACATAACG
* *
72742350 ATGCCGATAG-CCCAG-CTATGGTCTTACACGA-AATCAAATAACG
1 ATGCCAAT-GTCCCAGAC-ATGGTCTTACAC-ATAATCACATAACG
**
72742393 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACATAGTG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACATAACG
*
72742436 ATGCCAATGTCCTAGACATGGTCTTACACATAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAT
72742475 CTCGTTCATC
Statistics
Matches: 105, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
42 7 0.07
43 97 0.92
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAATCACATAACG
Found at i:72751019 original size:40 final size:40
Alignment explanation
Indices: 72750975--72751054 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
72750965 AAAGAAAAAA
*
72750975 GAGAAGGAAAAGAGTTTCGGTACAAGCTAGAGAGTGAACC
1 GAGAAGGAAAAGAGTTTCGGCACAAGCTAGAGAGTGAACC
*
72751015 GAGAAGGAAAAGAGTTTCGGCACAGGCTAGAGAGTGAACC
1 GAGAAGGAAAAGAGTTTCGGCACAAGCTAGAGAGTGAACC
72751055 AAAAGAGTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.39, C:0.14, G:0.34, T:0.14
Consensus pattern (40 bp):
GAGAAGGAAAAGAGTTTCGGCACAAGCTAGAGAGTGAACC
Found at i:72757503 original size:26 final size:26
Alignment explanation
Indices: 72757469--72757518 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
72757459 CTAGCACACC
*
72757469 AATATCGCAGCAAAGCTGCCAGTAAT
1 AATAACGCAGCAAAGCTGCCAGTAAT
***
72757495 AATAACGCAGTGTAGCTGCCAGTA
1 AATAACGCAGCAAAGCTGCCAGTA
72757519 GCAGTAAGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
AATAACGCAGCAAAGCTGCCAGTAAT
Found at i:72759416 original size:542 final size:542
Alignment explanation
Indices: 72758394--72759472 Score: 2095
Period size: 542 Copynumber: 2.0 Consensus size: 542
72758384 AAAATTTGAC
72758394 ACCTATACTCTTCCTAATTGCCGAAAACACACTCCCCAAAACCCCTTAGCCGAATTTGAACTCAC
1 ACCTATACTCTTCCTAATTGCCGAAAACACACTCCCCAAAACCCCTTAGCCGAATTTGAACTCAC
72758459 AAGCACCCCTATTCGGTTCCAACTCCTACTAATTCAAATACCTTAAAATCCTCCACGATTTTCAC
66 AAGCACCCCTATTCGGTTCCAACTCCTACTAATTCAAATACCTTAAAATCCTCCACGATTTTCAC
72758524 CCCTTATCTCTCCATAACAACCTCCAAGACCCATTCAAACTCTCACCCAGTAGAGTTTCAGTCCA
131 CCCTTATCTCTCCATAACAACCTCCAAGACCCATTCAAACTCTCACCCAGTAGAGTTTCAGTCCA
72758589 CTACTAACTCTTACCGTACCAAGGAGCAAAATTAACATCTTTCACCTTCTATGGGATTCGAACCC
196 CTACTAACTCTTACCGTACCAAGGAGCAAAATTAACATCTTTCACCTTCTATGGGATTCGAACCC
*
72758654 CAGTCTATTCATCTGCCAAATCACGCCACGTGGCTTTTTGTGGTAACAAACAACCACAATTATTC
261 CAGTCTATTCATCTGCCAAATCACGCCACATGGCTTTTTGTGGTAACAAACAACCACAATTATTC
72758719 ATAAAGCCTAGGTGCCGACGTTCAGGTTCTTTTTAAAAGAAAACAAATTTTTTGCAAAAGCTAGA
326 ATAAAGCCTAGGTGCCGACGTTCAGGTTCTTTTTAAAAGAAAACAAATTTTTTGCAAAAGCTAGA
*
72758784 GCTTGAACCCAGACCTTCTCAGACGCCCCCAAACACGCCCAAATCATTTAGCCACCACACCAAAC
391 GCTTGAACCCAGACCTTCTCAAACGCCCCCAAACACGCCCAAATCATTTAGCCACCACACCAAAC
72758849 ATGTGATTTATGTCAAACCTGAAAAAATTACAAACCCTAAATTTTTTAGGCGTTACACAAGGCCT
456 ATGTGATTTATGTCAAACCTGAAAAAATTACAAACCCTAAATTTTTTAGGCGTTACACAAGGCCT
72758914 AAACACAAACCCCTTTTGTCAA
521 AAACACAAACCCCTTTTGTCAA
72758936 ACCTATACTCTTCCTAATTGCCGAAAACACACTCCCCAAAACCCCTTAGCCGAATTTGAACTCAC
1 ACCTATACTCTTCCTAATTGCCGAAAACACACTCCCCAAAACCCCTTAGCCGAATTTGAACTCAC
72759001 AAGCACCCCTATTCGGTTCCAACTCCTACTAATTCAAATACCTTAAAATCCTCCACGATTTTCAC
66 AAGCACCCCTATTCGGTTCCAACTCCTACTAATTCAAATACCTTAAAATCCTCCACGATTTTCAC
72759066 CCCTTATCTCTCCATAACAACCTCCAAGACCCATTCAAACTCTCACCCAGTAGAGTTTCAGTCCA
131 CCCTTATCTCTCCATAACAACCTCCAAGACCCATTCAAACTCTCACCCAGTAGAGTTTCAGTCCA
*
72759131 CTACTAACTCTTACCGTACCAAGGAGCAAAATTAACATCTTTCACCTTCTATGGGATTTGAACCC
196 CTACTAACTCTTACCGTACCAAGGAGCAAAATTAACATCTTTCACCTTCTATGGGATTCGAACCC
*
72759196 CAGTCTGTTCATCTGCCAAATCACGCCACATGGCTTTTTGTGGTAACAAACAACCACAATTATTC
261 CAGTCTATTCATCTGCCAAATCACGCCACATGGCTTTTTGTGGTAACAAACAACCACAATTATTC
*
72759261 ATAAAGCCTAGGTGCCGACGTTCAGGTTCTTTTTAAAAGAAAACAATTTTTTTGCAAAAGCTAGA
326 ATAAAGCCTAGGTGCCGACGTTCAGGTTCTTTTTAAAAGAAAACAAATTTTTTGCAAAAGCTAGA
* *
72759326 GCTTGAACCCAGGCCTTCTCAAACGCCCCCAAACATGCCCAAATCATTTAGCCACCACACCAAAC
391 GCTTGAACCCAGACCTTCTCAAACGCCCCCAAACACGCCCAAATCATTTAGCCACCACACCAAAC
72759391 ATGTGATTTATGTCAAACCTGAAAAAATTACAAACCCTAAATTTTTTAGGCGTTACACAAGGCCT
456 ATGTGATTTATGTCAAACCTGAAAAAATTACAAACCCTAAATTTTTTAGGCGTTACACAAGGCCT
72759456 AAACACAAACCCCTTTT
521 AAACACAAACCCCTTTT
72759473 CTAAGTTTGG
Statistics
Matches: 530, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
542 530 1.00
ACGTcount: A:0.33, C:0.30, G:0.11, T:0.26
Consensus pattern (542 bp):
ACCTATACTCTTCCTAATTGCCGAAAACACACTCCCCAAAACCCCTTAGCCGAATTTGAACTCAC
AAGCACCCCTATTCGGTTCCAACTCCTACTAATTCAAATACCTTAAAATCCTCCACGATTTTCAC
CCCTTATCTCTCCATAACAACCTCCAAGACCCATTCAAACTCTCACCCAGTAGAGTTTCAGTCCA
CTACTAACTCTTACCGTACCAAGGAGCAAAATTAACATCTTTCACCTTCTATGGGATTCGAACCC
CAGTCTATTCATCTGCCAAATCACGCCACATGGCTTTTTGTGGTAACAAACAACCACAATTATTC
ATAAAGCCTAGGTGCCGACGTTCAGGTTCTTTTTAAAAGAAAACAAATTTTTTGCAAAAGCTAGA
GCTTGAACCCAGACCTTCTCAAACGCCCCCAAACACGCCCAAATCATTTAGCCACCACACCAAAC
ATGTGATTTATGTCAAACCTGAAAAAATTACAAACCCTAAATTTTTTAGGCGTTACACAAGGCCT
AAACACAAACCCCTTTTGTCAA
Found at i:72759922 original size:18 final size:18
Alignment explanation
Indices: 72759896--72759931 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
72759886 TAATAGGAAA
*
72759896 TTCGGCTTCGACTTTGAC
1 TTCGACTTCGACTTTGAC
72759914 TTCGACTTCGACTTTGAC
1 TTCGACTTCGACTTTGAC
72759932 CTAACCTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.39
Consensus pattern (18 bp):
TTCGACTTCGACTTTGAC
Found at i:72760283 original size:17 final size:19
Alignment explanation
Indices: 72760254--72760288 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
72760244 CAACATAGAT
72760254 ATTAATGATACTT-AAATA
1 ATTAATGATACTTCAAATA
72760272 ATTAAT-ATACTTCAAAT
1 ATTAATGATACTTCAAAT
72760289 TTTACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (19 bp):
ATTAATGATACTTCAAATA
Found at i:72762056 original size:30 final size:30
Alignment explanation
Indices: 72762020--72762080 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
72762010 TTTGAACCTT
72762020 AGGAATAGTTGAGGATACAAGTGACATGTC
1 AGGAATAGTTGAGGATACAAGTGACATGTC
72762050 AGGAATAGTTGAGGATACAAGTGACATGTC
1 AGGAATAGTTGAGGATACAAGTGACATGTC
72762080 A
1 A
72762081 CTAGGATAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.30, T:0.23
Consensus pattern (30 bp):
AGGAATAGTTGAGGATACAAGTGACATGTC
Found at i:72762656 original size:43 final size:42
Alignment explanation
Indices: 72762572--72762653 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 42
72762562 TTGCATGTGT
72762572 ACTTACTAAGCTTTATAGCTTACCCTCCTCTCTTTCCCCTTC
1 ACTTACTAAGCTTTATAGCTTACCCTCCTCTCTTTCCCCTTC
* *
72762614 NACTTGCTAAGCTTTATAGCTTACCCTTCTCTTCTTTCCC
1 -ACTTACTAAGCTTTATAGCTTACCCTCCTC-TCTTTCCC
72762654 TTCTCTTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
43 28 0.78
44 8 0.22
ACGTcount: A:0.16, C:0.35, G:0.06, T:0.41
Consensus pattern (42 bp):
ACTTACTAAGCTTTATAGCTTACCCTCCTCTCTTTCCCCTTC
Found at i:72776844 original size:38 final size:38
Alignment explanation
Indices: 72776755--72776881 Score: 146
Period size: 38 Copynumber: 3.3 Consensus size: 38
72776745 TCGGTTTGGT
* * *
72776755 GTGTTTCGGTTGAATCTGCTCTTATGAGCTTCTGCTTG
1 GTGTTTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTG
** ** * *
72776793 GCATTTCTATTGGATCAACTCTTATGAGCTTTTGTTTG
1 GTGTTTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTG
* *
72776831 GTGTTTCGGTTGGATCAGCTCCTATGAGCTTCTGTCTG
1 GTGTTTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTG
72776869 GTGTGTTCGGTTG
1 GTGT-TTCGGTTG
72776882 ATCTAATGAT
Statistics
Matches: 71, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
38 63 0.89
39 8 0.11
ACGTcount: A:0.12, C:0.17, G:0.27, T:0.44
Consensus pattern (38 bp):
GTGTTTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTG
Found at i:72779809 original size:27 final size:27
Alignment explanation
Indices: 72778198--72779804 Score: 2243
Period size: 27 Copynumber: 59.6 Consensus size: 27
72778188 TTAGTTTACC
** *
72778198 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
72778224 AAATTACCAAAATACTCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
72778251 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * * **
72778278 AAATCACCAAAATAACCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
72778305 AAATTACCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
72778332 AAATTACGAAAATACCCAT-TTCTTATA
1 AAATTACCAAAATACCCCTAGT-TTGTA
*
72778359 AAATTACCAAAATATCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72778386 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
72778413 AAATTACCAAAATA-CCCTTGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72778439 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
72778466 AAATTACCAAAATA-CCCTTGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72778492 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
72778519 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
72778546 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
** * **
72778573 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*** * *
72778600 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
* *
72778627 AAATTACCAAAGTA-CCCTTGATTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
* * **** * *
72778654 GAATTATCGTCTTA-CCCTCGATT-TA
1 AAATTACCAAAATACCCCTAGTTTGTA
*** * **
72778679 CATAATTACCATTTTA-CCCTCGATTTACA
1 -A-AATTACCAAAATACCCCTAG-TTTGTA
** ** * **
72778708 AAATTACTGAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
* ***
72778735 AAATTACCAAAATA-CCCTCGATCAATA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*
72778762 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
72778789 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * * **
72778816 AAATCACCAAAATAACCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
72778843 AAATTACCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
72778870 AAATTACGAAAATACCCAT-TTCTTATA
1 AAATTACCAAAATACCCCTAGT-TTGTA
*
72778897 AAATTACCAAAATATCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72778924 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72778951 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72778978 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779005 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779032 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779059 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779086 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779113 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779140 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779167 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779194 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779221 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779248 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779275 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779302 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779329 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779356 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779383 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779410 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779437 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779464 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779491 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779518 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779545 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779572 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779599 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779626 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779653 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779680 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
72779707 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
72779734 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
72779761 AAATTACCGAAATACCCCT-GTATGGTA
1 AAATTACCAAAATACCCCTAGT-TTGTA
* *
72779788 GAATTACCGAAATACCC
1 AAATTACCAAAATACCC
72779805 GTGTAAGGTG
Statistics
Matches: 1451, Mismatches: 113, Indels: 33
0.91 0.07 0.02
Matches are distributed among these distances:
25 2 0.00
26 77 0.05
27 1358 0.94
28 13 0.01
29 1 0.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:72779881 original size:27 final size:27
Alignment explanation
Indices: 72778925--72780277 Score: 726
Period size: 27 Copynumber: 50.3 Consensus size: 27
72778915 TAGTTTGTAA
* ** *
72778925 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72778952 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72778979 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779006 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779033 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779060 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779087 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779114 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779141 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779168 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779195 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779222 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779249 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779276 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779303 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779330 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779357 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779384 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779411 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779438 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779465 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779492 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779519 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779546 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779573 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779600 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779627 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779654 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779681 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
72779708 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* * **
72779735 AATTACCAAAATACCCCT-AATTTGT-G
1 AATTACCGAAATACCCCTGTA-GGGTAG
*
72779761 AAATTACCGAAATACCCCTGTATGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAG
* *
72779789 AATTACCGAAATACCCGTGTAAGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
72779815 AAATACCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
72779842 AATTATCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
72779869 AATTATCGCAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
72779896 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
72779923 AATTACCGAAATACCCTTGTAGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
72779949 AAATACCTAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
72779976 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
72780003 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
72780030 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
72780057 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
72780084 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
72780111 AATTACTAAAATACCCCGGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
72780138 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
72780165 AATTACCGAAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
72780191 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
72780218 AATTACTGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
72780245 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
72780271 AATTACC
1 AATTACC
72780278 ATTTTGCCCC
Statistics
Matches: 1255, Mismatches: 63, Indels: 17
0.94 0.05 0.01
Matches are distributed among these distances:
26 85 0.07
27 1168 0.93
28 2 0.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:72779900 original size:134 final size:135
Alignment explanation
Indices: 72779762--72780251 Score: 718
Period size: 134 Copynumber: 3.7 Consensus size: 135
72779752 TAATTTGTGA
* * *
72779762 AATTACCGAAATACCCCTGTATGGTAGAATTACCGAAATACCCGTGTAAGGT-GAAATACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
* * *
72779826 TACCCCTGTAGGATAGAATTATCAAAATACCCCTATAGGGTAGAATTATCGCAATACCCCTGTAA
66 TACCCCTGTAGGGTAGAATTATCAAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAG
72779891 GGTAG
131 GGTAG
* *
72779896 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT-GAAATACCTAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
* * * * *
72779960 TACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAG
66 TACCCCTGTAGGGTAGAATTATCAAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAG
72780025 GGTAG
131 GGTAG
* * * *
72780030 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
* * *
72780095 TACCCTTATAGGGTAGAATTA-CTAAAATACCCCGGTAGGGTAGAATTATCGCAATACCCCTGTA
66 TACCCCTGTAGGGTAGAATTATC-AAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTA
72780159 GGGTAG
130 GGGTAG
* * * *
72780165 AATTACCGAAATACCCCTGTA-GGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
*
72780229 TACCCCTGTAGGGTGGAATTATC
66 TACCCCTGTAGGGTAGAATTATC
72780252 GAGATACCTT
Statistics
Matches: 321, Mismatches: 32, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
134 227 0.71
135 94 0.29
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (135 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
TACCCCTGTAGGGTAGAATTATCAAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAG
GGTAG
Done.