Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 22 of 276
Found at i:6903905 original size:42 final size:42
Alignment explanation
Indices: 6903838--6904129 Score: 193
Period size: 42 Copynumber: 6.7 Consensus size: 42
6903828 ATTGTGATAC
** * * *
6903838 GTGTAAGACCATGCCTGAGACATGGCATCGATATGAGATCCT
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTT
*
6903880 GTGTAAGACCATATCTAGGATATGGCATCAGCATCGATATGAGATCTT
1 GTGTAAGACCATATCTGGGATAT-G-----GCATCGATATGAGATCTT
*
6903928 GTGTAATACCATATCTGGGATATGGCATCGGGATCGATATGAGAT-TAT
1 GTGTAAGACCATATCTGGGATATGG---C---ATCGATATGAGATCT-T
*
6903976 GTGTAAGACCATATCTGGGATATGGCTTC-AGTATGAGAT-TT
1 GTGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATCTT
* * * * ** * *
6904017 CATGTAAGACCGTGTCTAGGATGCGGCATCAATATGTGAT-TT
1 -GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTT
* * * *
6904059 CTATAAGACCATTTCTGGGACATGGCATCGATATGAGA-CTTT
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATC-TT
6904101 GTGTAAGACCATAGT-T-GGACTATGGCATC
1 GTGTAAGACCATA-TCTGGGA-TATGGCATC
6904130 AAGTAAAAGA
Statistics
Matches: 198, Mismatches: 32, Indels: 40
0.73 0.12 0.15
Matches are distributed among these distances:
41 33 0.17
42 82 0.41
43 3 0.02
45 2 0.01
47 2 0.01
48 76 0.38
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTT
Found at i:6903933 original size:48 final size:48
Alignment explanation
Indices: 6903862--6904006 Score: 220
Period size: 48 Copynumber: 3.0 Consensus size: 48
6903852 CTGAGACATG
* *
6903862 GCATCGATATGAGATCCTGTGTAAGACCATATCTAGGATATGGCATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
* *
6903910 GCATCGATATGAGATCTTGTGTAATACCATATCTGGGATATGGCATCG
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
* *
6903958 GGATCGATATGAGAT-TATGTGTAAGACCATATCTGGGATATGGCTTCA
1 GCATCGATATGAGATCT-TGTGTAAGACCATATCTGGGATATGGCATCA
6904006 G
1 G
6904007 TATGAGATTT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 1 0.01
48 87 0.99
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (48 bp):
GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
Found at i:6906503 original size:26 final size:26
Alignment explanation
Indices: 6906474--6906583 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
6906464 TGGTACAAAT
6906474 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
6906500 TGATAATAGGTTTGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6906526 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6906552 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6906578 TGATAA
1 TGATAA
6906584 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:6910723 original size:40 final size:40
Alignment explanation
Indices: 6910670--6910745 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
6910660 GCTAAAAAAA
6910670 TGGCACTTAGTGTGCTG-TTCGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGC-GATTCGAAATAGCTTCGGCTAAATG
* * *
6910710 TGGCACTTGGTGTGCGATTGGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTCGAAATAGCTTCGGCTA
6910746 TTTATGTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 1 0.03
40 31 0.97
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGAAATAGCTTCGGCTAAATG
Found at i:6919912 original size:21 final size:22
Alignment explanation
Indices: 6919870--6919913 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
6919860 TTAAATGACT
*
6919870 TGTTTATTGAATTGTAAAAATA
1 TGTTTATTGAATTCTAAAAATA
* *
6919892 TGTTT-TTGATTTCTAATAATA
1 TGTTTATTGAATTCTAAAAATA
6919913 T
1 T
6919914 ATCATGACTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.34, C:0.02, G:0.11, T:0.52
Consensus pattern (22 bp):
TGTTTATTGAATTCTAAAAATA
Found at i:6922813 original size:15 final size:15
Alignment explanation
Indices: 6922783--6922812 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6922773 GTGTACCCTG
6922783 TATTTTGAAAATTTT
1 TATTTTGAAAATTTT
6922798 TATTTTG-AAATTTT
1 TATTTTGAAAATTTT
6922812 T
1 T
6922813 TTTAAGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (15 bp):
TATTTTGAAAATTTT
Found at i:6927514 original size:29 final size:29
Alignment explanation
Indices: 6927482--6927556 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
6927472 AATCATATTC
*
6927482 ATATGGCCCATTAGGCCAAAATCACCTGT
1 ATATGGCCCATTAGGCCAAAATCACATGT
* *
6927511 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCAAAATCACATGT
*
6927540 ATATGGCCCGTTAGGCC
1 ATATGGCCCATTAGGCC
6927557 TAGTCACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCAAAATCACATGT
Found at i:6927521 original size:57 final size:58
Alignment explanation
Indices: 6927448--6927556 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 58
6927438 AATTTCACAT
* * *
6927448 ACCTGTATCTGTCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCAAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCAAAATC
* * *
6927505 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
6927557 TAGTCACATT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCAAAATC
Found at i:6927805 original size:16 final size:16
Alignment explanation
Indices: 6927781--6927816 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
6927771 GTAGCCAAAC
* *
6927781 TTTCGGCTTTTCGGTA
1 TTTCAGCTTTTCGGCA
6927797 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
6927813 TTTC
1 TTTC
6927817 GACTTTTGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.22, G:0.19, T:0.50
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:6927822 original size:16 final size:16
Alignment explanation
Indices: 6927781--6927823 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
6927771 GTAGCCAAAC
* *
6927781 TTTCGGCTTTTCGGTA
1 TTTCGACTTTTCGGCA
6927797 TTTC-AGCTTTTCGGCA
1 TTTCGA-CTTTTCGGCA
6927813 TTTCGACTTTT
1 TTTCGACTTTT
6927824 GCCTATACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.09, C:0.21, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:6935058 original size:28 final size:28
Alignment explanation
Indices: 6935016--6935101 Score: 111
Period size: 28 Copynumber: 3.0 Consensus size: 28
6935006 TACCTGTATC
* *
6935016 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
6935044 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
*
6935073 TGGCCCATTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
6935101 T
1 T
6935102 TTATGCTCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
27 1 0.02
28 24 0.48
29 24 0.48
30 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:6935073 original size:29 final size:29
Alignment explanation
Indices: 6935007--6935088 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 29
6934997 AATTTCACAT
* *
6935007 ACCTGTATCTGGCCCATTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
**
6935035 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
6935064 ACCTGTATATGGCCCATTAGGCCCA
1 ACCTGTATATGGCCCATTAGGCCCA
6935089 GTCACATTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.02
28 18 0.40
29 25 0.56
30 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:6935660 original size:41 final size:41
Alignment explanation
Indices: 6935601--6935685 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
6935591 ATCGAGATCT
6935601 GACACTAATTCCCAACCAAAGTCGATTAGAAAGAAATGAGG
1 GACACTAATTCCCAACCAAAGTCGATTAGAAAGAAATGAGG
* * *
6935642 GACACTAATTCCCTACCAAAGTCTATTAGAAAGAAATGATG
1 GACACTAATTCCCAACCAAAGTCGATTAGAAAGAAATGAGG
6935683 GAC
1 GAC
6935686 TGAATACTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (41 bp):
GACACTAATTCCCAACCAAAGTCGATTAGAAAGAAATGAGG
Found at i:6936516 original size:16 final size:16
Alignment explanation
Indices: 6936495--6936526 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6936485 AGAAAATTTG
6936495 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
*
6936511 AGATTTCGGGATTTTT
1 AGATTTCGAGATTTTT
6936527 GAGGCATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.06, G:0.22, T:0.50
Consensus pattern (16 bp):
AGATTTCGAGATTTTT
Found at i:6937791 original size:297 final size:297
Alignment explanation
Indices: 6937257--6938445 Score: 2360
Period size: 297 Copynumber: 4.0 Consensus size: 297
6937247 AACATGTTTA
*
6937257 ATTTTGAAATGTTGCATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
1 ATTTTGAAATGTTGTATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
6937322 TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
66 TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
6937387 AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
131 AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
6937452 AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
196 AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
6937517 GTTTTCTACCTTGGTATGTTTATGGTATTGTTGTGCT
261 GTTTTCTACCTTGGTATGTTTATGGTATTGTTGTGCT
6937554 ATTTTGAAATGTTGTATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
1 ATTTTGAAATGTTGTATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
6937619 TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
66 TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
6937684 AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
131 AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
6937749 AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
196 AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
6937814 GTTTTCTACCTTGGTATGTTTATGGTATTGTTGTGCT
261 GTTTTCTACCTTGGTATGTTTATGGTATTGTTGTGCT
6937851 ATTTTGAAATGTTGTATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
1 ATTTTGAAATGTTGTATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
6937916 TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
66 TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
6937981 AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
131 AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
6938046 AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
196 AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
6938111 GTTTTCTACCTTGGTATGTTTATGGTATTGTTGTGCT
261 GTTTTCTACCTTGGTATGTTTATGGTATTGTTGTGCT
6938148 ATTTTGAAATGTTGTATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
1 ATTTTGAAATGTTGTATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
6938213 TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
66 TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
6938278 AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
131 AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
6938343 AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
196 AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
*
6938408 GTTTTCTACCTTGGTATGTTTATGGTCTTGTTGTGCT
261 GTTTTCTACCTTGGTATGTTTATGGTATTGTTGTGCT
6938445 A
1 A
6938446 ATTGTTCACT
Statistics
Matches: 890, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
297 890 1.00
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (297 bp):
ATTTTGAAATGTTGTATGTAATAGGAGTATCTTCTATATGTTTTAAGTACTTATTACAAGTGGTA
TTTTCTATACTTGTGTGATAAATATATGCTTTAGTTAATAATATGTTAATTCATGGTTTGGTATG
AAATCCAAATATAATGGAACTTGTCATGTAATAGGTGAAATTTGTATATGTTTTGATTGTGCGTT
AAATGTGGTATTGGTTAGATTCATGAAATGATGTTTATGTTTTGTAATAGCTTATATGTGATCAT
GTTTTCTACCTTGGTATGTTTATGGTATTGTTGTGCT
Found at i:6942455 original size:38 final size:38
Alignment explanation
Indices: 6942404--6942498 Score: 181
Period size: 38 Copynumber: 2.5 Consensus size: 38
6942394 AAAAAATACT
6942404 ATACCAGTGGACTTTTATAGTTGGAGCTAAAGATATCG
1 ATACCAGTGGACTTTTATAGTTGGAGCTAAAGATATCG
*
6942442 ATACCAGTGGACTTTTATCGTTGGAGCTAAAGATATCG
1 ATACCAGTGGACTTTTATAGTTGGAGCTAAAGATATCG
6942480 ATACCAGTGGACTTTTATA
1 ATACCAGTGGACTTTTATA
6942499 TATACCATAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.33
Consensus pattern (38 bp):
ATACCAGTGGACTTTTATAGTTGGAGCTAAAGATATCG
Found at i:6945414 original size:28 final size:28
Alignment explanation
Indices: 6945382--6945468 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
6945372 AAAGTACTTG
6945382 AAACTATAATCACCGGCACTGAGTGCCT
1 AAACTATAATCACCGGCACTGAGTGCCT
* *
6945410 AAACTATAA-CACCGGTAC-GAAGTACCT
1 AAACTATAATCACCGGCACTG-AGTGCCT
**
6945437 GAAACTATAATCACTAGCAACT-AGTGCCT
1 -AAACTATAATCACCGGC-ACTGAGTGCCT
6945466 AAA
1 AAA
6945469 ATGCCCTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
26 1 0.02
27 14 0.29
28 21 0.44
29 10 0.21
30 2 0.04
ACGTcount: A:0.39, C:0.25, G:0.15, T:0.21
Consensus pattern (28 bp):
AAACTATAATCACCGGCACTGAGTGCCT
Found at i:6949491 original size:23 final size:25
Alignment explanation
Indices: 6949430--6949547 Score: 115
Period size: 23 Copynumber: 4.9 Consensus size: 25
6949420 TTCAAGCTAT
**
6949430 GAACAGTAAGCTTCT-CCTGAGCTGA
1 GAACAGTAAGC-TCTATATGAGCTGA
6949455 TGAACAGTAAGCTCTAT-TGAGCTGA
1 -GAACAGTAAGCTCTATATGAGCTGA
* * *
6949480 -AACGGTAAGCTCT-GACGAGCTG-
1 GAACAGTAAGCTCTATATGAGCTGA
*
6949502 GAACAGTAAGCTC-ATACGAGCTGA
1 GAACAGTAAGCTCTATATGAGCTGA
6949526 GAACAGTAAGCTCT-TATGAGCT
1 GAACAGTAAGCTCTATATGAGCT
6949548 CATATATCAG
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
23 37 0.47
24 20 0.25
25 11 0.14
26 11 0.14
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (25 bp):
GAACAGTAAGCTCTATATGAGCTGA
Found at i:6957979 original size:49 final size:47
Alignment explanation
Indices: 6957858--6957989 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 47
6957848 ATACGGTACG
* *
6957858 ATGTCGATGCCATGTTCCAAACATGGTCTTATACTGGCTCTCACATCT
1 ATGTCGATGCCATGTGCCAAACA-GGTCTTACACTGGCTCTCACATCT
* * * *
6957906 AAGTTGATGCCATG-GCCCAGACAGGTCTTACATTGGCTCTCACTTATCT
1 ATGTCGATGCCATGTG-CCAAACAGGTCTTACACTGGCTCTCAC--ATCT
6957955 ATGTCGATGCCATGTGCCAAACAGGTCTTACACTG
1 ATGTCGATGCCATGTGCCAAACAGGTCTTACACTG
6957990 ACACAACTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
47 18 0.26
48 18 0.26
49 33 0.47
50 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (47 bp):
ATGTCGATGCCATGTGCCAAACAGGTCTTACACTGGCTCTCACATCT
Found at i:6958030 original size:93 final size:97
Alignment explanation
Indices: 6957858--6958030 Score: 228
Period size: 93 Copynumber: 1.8 Consensus size: 97
6957848 ATACGGTACG
* * * * * ** *
6957858 ATGTCGATGCCATGTTCCAAACATGGTCTTATACTGGCTCTCACATCTAAGTTGATGCCATGGCC
1 ATGTCGATGCCATGTGCCAAACATGGTCTTACACTGACACTAACATCTAAGCCGATGCCATAGCC
6957923 CAGACAGGTCTTACATTGGCTCTCACTTATCT
66 CAGACAGGTCTTACATTGGCTCTCACTTATCT
*
6957955 ATGTCGATGCCATGTGCCAAACA-GGTCTTACACTGACAC-AAC-T-TAAGCCGATGCCATATCC
1 ATGTCGATGCCATGTGCCAAACATGGTCTTACACTGACACTAACATCTAAGCCGATGCCATAGCC
*
6958016 TAGACAGGTCTTACA
66 CAGACAGGTCTTACA
6958031 CTAGCTTGCA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
93 28 0.42
94 1 0.02
95 2 0.03
96 13 0.20
97 22 0.33
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (97 bp):
ATGTCGATGCCATGTGCCAAACATGGTCTTACACTGACACTAACATCTAAGCCGATGCCATAGCC
CAGACAGGTCTTACATTGGCTCTCACTTATCT
Found at i:6965698 original size:49 final size:47
Alignment explanation
Indices: 6965639--6965858 Score: 196
Period size: 49 Copynumber: 4.6 Consensus size: 47
6965629 CATCTAAGTT
*
6965639 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTTATCTGTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCA--TATCTGTGCC
* * * ** **
6965688 GATGCCATGTCTCAGACAGGTCTTACACT-G-ACACACCTC-AAGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATCTGTGCC
* * * *
6965732 AATGCCATGTCCCAGACAAGTCTTACACTAGCT-TGCATATCTTGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATC-TG-TGCC
* * * *
6965781 GATGCCATGTCCCAGATAGGTCTTACATTGGCTCTCATCTATCGGTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCA--TATCTGTGCC
*
6965830 GATACCATGTCCCAGACAGGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
6965859 AGCACACACA
Statistics
Matches: 134, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
44 28 0.21
45 3 0.02
46 4 0.03
47 3 0.02
48 1 0.01
49 89 0.66
50 2 0.01
51 4 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATCTGTGCC
Found at i:6967498 original size:25 final size:25
Alignment explanation
Indices: 6967464--6967522 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
6967454 TTGTTTTAAA
6967464 CTGAAACTATTATGGATAGTATATT
1 CTGAAACTATTATGGATAGTATATT
6967489 CTGAAACTATTATGGATAGTATATT
1 CTGAAACTATTATGGATAGTATATT
*
6967514 ATGAAACTA
1 CTGAAACTA
6967523 CTATAGGTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.37
Consensus pattern (25 bp):
CTGAAACTATTATGGATAGTATATT
Found at i:6971978 original size:79 final size:81
Alignment explanation
Indices: 6971867--6972051 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
6971857 GCTACTCGTT
* * *
6971867 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
6971930 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
6971947 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
6972011 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
6972027 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCG-GGCTTAGCCCGGA
6972052 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 35 0.39
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:6971984 original size:39 final size:40
Alignment explanation
Indices: 6971867--6972051 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
6971857 GCTACTCGTT
*
6971867 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
6971907 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
6971947 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
6971986 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
6972027 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
6972052 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 77 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:6974162 original size:40 final size:40
Alignment explanation
Indices: 6974098--6974282 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
6974088 CAATTGAAGA
* *
6974098 TTATATCCAGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
* * *
6974138 TTATTTTCGGGTTAAGTTCCGAAGGCATTCATGCTAGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
*
6974178 TTATTCCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
* **
6974218 CTATTTCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
** * *
6974258 TTACATCCGGGCTAAATCCCGAAGG
1 TTATTTCCGGGTTAAGTCCCGAAGG
6974283 TAATTGGGTT
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
Found at i:6982172 original size:40 final size:40
Alignment explanation
Indices: 6982107--6982331 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
6982097 CAATTGAGGA
* * *
6982107 TTATATCCGGGTTAAGTCCCCAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
6982147 TTATTTCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
6982187 TTATTCCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTT
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
6982227 TTATTTCCGAGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
6982267 CTATTTTCGGGTTAAGTCCCAAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
6982307 TTACATCCGGGCTAAATCCCGAAGG
1 TTATTTCCGGGTTAAGTCCCGAAGG
6982332 TAATTGGGTT
Statistics
Matches: 161, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 161 1.00
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.34
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:6982330 original size:120 final size:120
Alignment explanation
Indices: 6982107--6982331 Score: 353
Period size: 120 Copynumber: 1.9 Consensus size: 120
6982097 CAATTGAGGA
* * *
6982107 TTATATCCGGGTTAAGTCCCCAAGGCATTCATGCTGGTTGTTATTTCCGGGTTAAGTCCCGAAGG
1 TTATATCCGAGTTAAGTCCCCAAGGCATTCATGCTGGTTGCTATTTCCGGGTTAAGTCCCAAAGG
* * *
6982172 CATTTGTGCTGGTTGTTATTCCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTT
66 CATTTGTGCTGGTTGTTAATCCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTTT
* * *
6982227 TTATTTCCGAGTTAAGTCCCGAAGGCATTCATGCTGGTTGCTATTTTCGGGTTAAGTCCCAAAGG
1 TTATATCCGAGTTAAGTCCCCAAGGCATTCATGCTGGTTGCTATTTCCGGGTTAAGTCCCAAAGG
6982292 CATTTGTGCTGGTTGTTACAT-CCGGGCTAAATCCCGAAGG
66 CATTTGTGCTGGTTGTTA-ATCCCGGGCTAAATCCCGAAGG
6982332 TAATTGGGTT
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
120 94 0.99
121 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.34
Consensus pattern (120 bp):
TTATATCCGAGTTAAGTCCCCAAGGCATTCATGCTGGTTGCTATTTCCGGGTTAAGTCCCAAAGG
CATTTGTGCTGGTTGTTAATCCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTTT
Found at i:6995698 original size:39 final size:40
Alignment explanation
Indices: 6995644--6995782 Score: 194
Period size: 39 Copynumber: 3.5 Consensus size: 40
6995634 TAATGGAGAA
6995644 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTG
*
6995683 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
6995722 TTATATCCGGGCTAAAGTCCTGCAGGC-TTTGTGCTGGTT
1 TTATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTG
*
6995761 TTATATCTGGGCTTAAAGTCCC
1 TTATATCCGGGC-TAAAGTCCC
6995783 ACATGCTTTG
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 71 0.79
40 19 0.21
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (40 bp):
TTATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:6995791 original size:40 final size:39
Alignment explanation
Indices: 6995644--6995800 Score: 160
Period size: 39 Copynumber: 4.0 Consensus size: 39
6995634 TAATGGAGAA
*
6995644 TTATATCCGGGCT-AAGTCCCGA-AGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCC-ACAGGC-TTTGTGCTGGTG
* *
6995683 TTATATCCGGGCT-AAGTCCCGA-AGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAAGTCCC-ACAGGC-TTTGTGCTGGTG
** *
6995722 TTATATCCGGGCTAAAGTCCTGCAGGCTTTGTGCTGGTT
1 TTATATCCGGGCTAAAGTCCCACAGGCTTTGTGCTGGTG
* * *
6995761 TTATATCTGGGCTTAAAGTCCCACATGCTTTGTGGTGGTG
1 TTATATCCGGGC-TAAAGTCCCACAGGCTTTGTGCTGGTG
6995801 ATTGGATTTG
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 71 0.69
40 32 0.31
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.33
Consensus pattern (39 bp):
TTATATCCGGGCTAAAGTCCCACAGGCTTTGTGCTGGTG
Found at i:7000189 original size:30 final size:30
Alignment explanation
Indices: 7000144--7000202 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
7000134 TTTAACAAGA
7000144 AAATACCTCTAAAATAATAATAAAATTAAC
1 AAATACCTCTAAAATAATAATAAAATTAAC
* *
7000174 AAATGCCTTTAAAATAATAATAAAATTAA
1 AAATACCTCTAAAATAATAATAAAATTAA
7000203 TAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (30 bp):
AAATACCTCTAAAATAATAATAAAATTAAC
Found at i:7000205 original size:12 final size:12
Alignment explanation
Indices: 7000183--7000211 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7000173 CAAATGCCTT
7000183 TAAAA-TAATAA
1 TAAAATTAATAA
7000194 TAAAATTAATAA
1 TAAAATTAATAA
7000206 TAAAAT
1 TAAAAT
7000212 AAGTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TAAAATTAATAA
Found at i:7008687 original size:6 final size:6
Alignment explanation
Indices: 7008677--7008708 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
7008667 AACCTCATTT
*
7008677 ATATAT ATATAA ATATAA ATATAA ATATAA AT
1 ATATAA ATATAA ATATAA ATATAA ATATAA AT
7008709 CATTCTTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (6 bp):
ATATAA
Found at i:7009113 original size:60 final size:60
Alignment explanation
Indices: 7009040--7009153 Score: 228
Period size: 60 Copynumber: 1.9 Consensus size: 60
7009030 CTTCTTTTAA
7009040 TAAATATTCATGAATCATCTTCAATTTAGATGCCTTAGATTTTAACTAATCCTGGGCATC
1 TAAATATTCATGAATCATCTTCAATTTAGATGCCTTAGATTTTAACTAATCCTGGGCATC
7009100 TAAATATTCATGAATCATCTTCAATTTAGATGCCTTAGATTTTAACTAATCCTG
1 TAAATATTCATGAATCATCTTCAATTTAGATGCCTTAGATTTTAACTAATCCTG
7009154 TTATCCATAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (60 bp):
TAAATATTCATGAATCATCTTCAATTTAGATGCCTTAGATTTTAACTAATCCTGGGCATC
Found at i:7012119 original size:31 final size:30
Alignment explanation
Indices: 7012084--7012143 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
7012074 AAAAAAAATT
7012084 AATAGCCTAATGACTTAAATAAAAACTTTTG
1 AATAGCCTAATGACTTAAATAAAAA-TTTTG
** *
7012115 AATAGTTTAATGACTTAAATGAAAATTTT
1 AATAGCCTAATGACTTAAATAAAAATTTT
7012144 CAAATAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (30 bp):
AATAGCCTAATGACTTAAATAAAAATTTTG
Found at i:7012158 original size:31 final size:31
Alignment explanation
Indices: 7012092--7012160 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
7012082 TTAATAGCCT
* * *
7012092 AATGACTTAAATAAAAACTTTTGAATAGTTT
1 AATGACTTAAATAAAAACTTTTAAATAATTC
*
7012123 AATGACTTAAATGAAAA-TTTTCAAATAATTC
1 AATGACTTAAATAAAAACTTTT-AAATAATTC
7012154 AATGACT
1 AATGACT
7012161 ATTTTGTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 4 0.12
31 29 0.88
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (31 bp):
AATGACTTAAATAAAAACTTTTAAATAATTC
Found at i:7012351 original size:16 final size:16
Alignment explanation
Indices: 7012322--7012363 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7012312 AAAATTGGTT
* *
7012322 ATATTAATATTATTTA
1 ATATTAAAAATATTTA
*
7012338 ATCTTAAAAATATTTA
1 ATATTAAAAATATTTA
7012354 ATATTAAAAA
1 ATATTAAAAA
7012364 AACAAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATTAAAAATATTTA
Found at i:7012545 original size:23 final size:22
Alignment explanation
Indices: 7012494--7012545 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
7012484 ATTAAAATTG
7012494 TTAATAATCTATTTTTTATAAT
1 TTAATAATCTATTTTTTATAAT
* * *
7012516 TTTATAAT-TACTTTTTCTCTACT
1 TTAATAATCTA-TTTTT-TATAAT
7012539 TTAATAA
1 TTAATAA
7012546 ATGAATGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 2 0.08
22 12 0.50
23 10 0.42
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.58
Consensus pattern (22 bp):
TTAATAATCTATTTTTTATAAT
Found at i:7023898 original size:14 final size:15
Alignment explanation
Indices: 7023869--7023898 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7023859 CAAAATTTAG
7023869 ACATGATACTTTCAC
1 ACATGATACTTTCAC
7023884 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
7023898 A
1 A
7023899 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:7024395 original size:34 final size:34
Alignment explanation
Indices: 7024353--7024442 Score: 117
Period size: 34 Copynumber: 2.6 Consensus size: 34
7024343 TTCTGATTTG
* *
7024353 ATATGACATTCTGATATGGTATATTTTTCTGGAA
1 ATATGACATTCTGATATGATATATGTTTCTGGAA
* *
7024387 ATATGACATTCTGATTTGATATATGTTTCTGGTA
1 ATATGACATTCTGATATGATATATGTTTCTGGAA
* * *
7024421 ATGTGACATTTTAATATGATAT
1 ATATGACATTCTGATATGATAT
7024443 TTGTGTTTGT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.46
Consensus pattern (34 bp):
ATATGACATTCTGATATGATATATGTTTCTGGAA
Found at i:7030364 original size:40 final size:40
Alignment explanation
Indices: 7030309--7030450 Score: 132
Period size: 40 Copynumber: 3.6 Consensus size: 40
7030299 CAAACACACC
*
7030309 AATTTGGA-ACCCAGTGCCTCATTAGATAATTCGAAGTAAT
1 AATTT-GACACCCAGTGTCTCATTAGATAATTCGAAGTAAT
* * **
7030349 AATTTGACACCCAGTGTCTCATTGGTTAAACCGAAGT-A-
1 AATTTGACACCCAGTGTCTCATTAGATAATTCGAAGTAAT
* * *
7030387 AA-TTGGCACCTAGTGTCTCA-TCGAATATATTCGAAGTAAT
1 AATTTGACACCCAGTGTCTCATTAG-ATA-ATTCGAAGTAAT
* *
7030427 AAATTGACACCTAGTGTCTCATTA
1 AATTTGACACCCAGTGTCTCATTA
7030451 ACTCGAAGTT
Statistics
Matches: 82, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
36 2 0.02
37 18 0.22
38 9 0.11
39 4 0.05
40 31 0.38
41 17 0.21
42 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (40 bp):
AATTTGACACCCAGTGTCTCATTAGATAATTCGAAGTAAT
Found at i:7030438 original size:41 final size:40
Alignment explanation
Indices: 7030334--7030448 Score: 128
Period size: 37 Copynumber: 2.9 Consensus size: 40
7030324 GCCTCATTAG
* * * *
7030334 ATAATTCGAAGTAATAATTTGACACCCAGTGTCTCATTGG
1 ATAATTCGAAGTAATAAATTGACACCTAGTGTCTCATCGA
* ** *
7030374 TTAAACCGAAG---TAAATTGGCACCTAGTGTCTCATCGA
1 ATAATTCGAAGTAATAAATTGACACCTAGTGTCTCATCGA
7030411 ATATATTCGAAGTAATAAATTGACACCTAGTGTCTCAT
1 ATA-ATTCGAAGTAATAAATTGACACCTAGTGTCTCAT
7030449 TAACTCGAAG
Statistics
Matches: 59, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
37 23 0.39
38 6 0.10
40 8 0.14
41 22 0.37
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (40 bp):
ATAATTCGAAGTAATAAATTGACACCTAGTGTCTCATCGA
Found at i:7031392 original size:13 final size:13
Alignment explanation
Indices: 7031374--7031401 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7031364 TGTATCTTTC
7031374 TTCCTTTTTCTAT
1 TTCCTTTTTCTAT
7031387 TTCCTTTTTCTAT
1 TTCCTTTTTCTAT
7031400 TT
1 TT
7031402 ATTTATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (13 bp):
TTCCTTTTTCTAT
Found at i:7031437 original size:18 final size:18
Alignment explanation
Indices: 7031414--7031451 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7031404 TTATTTGTTT
7031414 TATTATAATA-ATATAATA
1 TATTATAATATA-ATAATA
*
7031432 TATTATTATATAATAATA
1 TATTATAATATAATAATA
7031450 TA
1 TA
7031452 ACATATTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTATAATATAATAATA
Found at i:7034875 original size:26 final size:28
Alignment explanation
Indices: 7034821--7034881 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
7034811 TATTATCAAG
* *
7034821 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
7034849 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
7034875 AATTATA
1 AATTATA
7034882 CAAATTCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:7035077 original size:16 final size:16
Alignment explanation
Indices: 7035056--7035097 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7035046 TTATTAAATT
*
7035056 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7035072 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7035087 AT-TATGTTTAA
1 ATATAT-TTTAA
7035098 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7035082 original size:15 final size:15
Alignment explanation
Indices: 7035047--7035088 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7035037 TTAAGAATTT
*
7035047 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7035061 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7035075 TATTTAATAATAAT
1 TATTTAATTATAAT
7035089 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7035334 original size:16 final size:16
Alignment explanation
Indices: 7035313--7035380 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
7035303 GATTTGCTAT
7035313 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7035329 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
7035345 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
7035361 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7035377 TACA
1 TACA
7035381 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7037259 original size:48 final size:48
Alignment explanation
Indices: 7037200--7037413 Score: 204
Period size: 48 Copynumber: 4.5 Consensus size: 48
7037190 TATGTGCGCT
*
7037200 AGTGTAAGACATGTCTGAGACATGCATCAGCTTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATATTTAAGCC
* * * * *
7037248 AGTGTAAGACATGGCTGAGATATGCATCAACTTTGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATATTTAAGCC
* ** * * * *
7037296 AGTGTAAGACATGTATGGGACATGCATTGGCATT-AAGACGA---GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-TTCGAGA-TATTTAAGCC
* ** *
7037342 AGTGTAAGACATGTCTGGGACATGCATCAGGC-TCGCGATACATAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCA-GCTTCGAGATATTTAAGCC
*
7037390 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
7037414 GCGTTAGCTT
Statistics
Matches: 136, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
45 2 0.01
46 31 0.23
47 2 0.01
48 98 0.72
49 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATATTTAAGCC
Found at i:7037508 original size:48 final size:49
Alignment explanation
Indices: 7037433--7037557 Score: 148
Period size: 48 Copynumber: 2.6 Consensus size: 49
7037423 TGTAGTGTGT
* * *
7037433 CAGTGTAAGACCTATCTGGGACATGGCA-CTGACACTGA-TAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATC-GAC-CTCACTAGATGAAAGC
* * *
7037482 CCGTGTAAGACCTGTC-GGGACATGGCATCGGCCTCACTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCACTAGATGAAAGC
7037530 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
7037558 GTCAGCATCT
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
47 3 0.05
48 33 0.51
49 19 0.29
50 10 0.15
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCACTAGATGAAAGC
Found at i:7043502 original size:20 final size:20
Alignment explanation
Indices: 7043477--7043515 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
7043467 AGTTTATTTG
7043477 CTTGAGTTTGGGATGAACAT
1 CTTGAGTTTGGGATGAACAT
7043497 CTTGAGTTTGGGATGAACA
1 CTTGAGTTTGGGATGAACA
7043516 AAGTTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (20 bp):
CTTGAGTTTGGGATGAACAT
Found at i:7043990 original size:63 final size:64
Alignment explanation
Indices: 7043923--7044063 Score: 187
Period size: 63 Copynumber: 2.2 Consensus size: 64
7043913 CTCTACTTTA
* **
7043923 GAATTAGAGTCACATC-AACCATGGACACGAGTGTGTGTCCAGGCCGTGTAACTCACTGTTTTG
1 GAATTAGAGTCACATCGAACCAGGGACACGAGCATGTGTCCAGGCCGTGTAACTCACTGTTTTG
* ** * *
7043986 GAATTAGAATCACA-CGGGCCAGGGACACGAGCATGTGTCCAGGCTGTGTAACTTACTGTTTTG
1 GAATTAGAGTCACATCGAACCAGGGACACGAGCATGTGTCCAGGCCGTGTAACTCACTGTTTTG
*
7044049 AAATTAGAGTCACAT
1 GAATTAGAGTCACAT
7044064 GGCCAAAGAC
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
62 1 0.02
63 65 0.98
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (64 bp):
GAATTAGAGTCACATCGAACCAGGGACACGAGCATGTGTCCAGGCCGTGTAACTCACTGTTTTG
Found at i:7044415 original size:27 final size:27
Alignment explanation
Indices: 7044377--7044432 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
7044367 TTTTTTCAGG
7044377 TGTGATTCGAGCTTTGTAAAAAATTGA
1 TGTGATTCGAGCTTTGTAAAAAATTGA
*
7044404 TGTGATTCGAGCTTTGTAAAAATTTGA
1 TGTGATTCGAGCTTTGTAAAAAATTGA
7044431 TG
1 TG
7044433 ATTCGTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.39
Consensus pattern (27 bp):
TGTGATTCGAGCTTTGTAAAAAATTGA
Found at i:7051979 original size:18 final size:18
Alignment explanation
Indices: 7051956--7051991 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7051946 ATTAATGAAT
*
7051956 GCATTGCAGGCTCCAAAA
1 GCATTGCAGACTCCAAAA
7051974 GCATTGCAGACTCCAAAA
1 GCATTGCAGACTCCAAAA
7051992 CAAAAGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.17
Consensus pattern (18 bp):
GCATTGCAGACTCCAAAA
Found at i:7052820 original size:24 final size:24
Alignment explanation
Indices: 7052788--7052839 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
7052778 GTTGTTGTAT
*
7052788 TTGAGTCTGTTGAGTTTAAAGAAG
1 TTGAGTCTGTTGAGTTCAAAGAAG
7052812 TTGAGTCTGTTGAGTTCAAAGAAG
1 TTGAGTCTGTTGAGTTCAAAGAAG
7052836 TTGA
1 TTGA
7052840 AATGGATGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.37
Consensus pattern (24 bp):
TTGAGTCTGTTGAGTTCAAAGAAG
Found at i:7055062 original size:58 final size:58
Alignment explanation
Indices: 7054999--7055121 Score: 176
Period size: 58 Copynumber: 2.1 Consensus size: 58
7054989 ATTCATATAC
* * * *
7054999 TAATAATTATATTAAGAATGTTATTAAATTATATGTTA-TTTTATTAAATTATATTTAA
1 TAATAATTATATTAA-AATATGATTAAATTATATATTATTTTTATTAAAATATATTTAA
* *
7055057 TAATAATTATGTTAAAATATGATTAAATTATTTATTATTTTTATTAAAATATATTTAA
1 TAATAATTATATTAAAATATGATTAAATTATATATTATTTTTATTAAAATATATTTAA
7055115 TAATAAT
1 TAATAAT
7055122 CTTATTACAA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 18 0.31
58 40 0.69
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (58 bp):
TAATAATTATATTAAAATATGATTAAATTATATATTATTTTTATTAAAATATATTTAA
Found at i:7058590 original size:12 final size:13
Alignment explanation
Indices: 7058568--7058601 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7058558 ATGAAGCTTA
*
7058568 TCTTCTTTTCTTT
1 TCTTTTTTTCTTT
7058581 T-TTTTTTTCTTT
1 TCTTTTTTTCTTT
7058593 TCTTTTTTT
1 TCTTTTTTT
7058602 GAGGAAAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TCTTTTTTTCTTT
Found at i:7059643 original size:18 final size:18
Alignment explanation
Indices: 7059620--7059666 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 18
7059610 GTTATAAAAA
7059620 ATGTTATATTAATTATAT
1 ATGTTATATTAATTATAT
*
7059638 ATGTTAAATAATAATTATAT
1 ATGTT--ATATTAATTATAT
7059658 AT-TTATATT
1 ATGTTATATT
7059667 TATATTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 4 0.16
18 5 0.20
19 2 0.08
20 14 0.56
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (18 bp):
ATGTTATATTAATTATAT
Found at i:7059833 original size:36 final size:36
Alignment explanation
Indices: 7059780--7059849 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
7059770 TTAAAAAAAA
* *
7059780 TTATATTTAATACAATAAAATATTTTTTATATTTTT
1 TTATATTTAATACAATAAAACATTTATTATATTTTT
* *
7059816 TTATTTTTAATATAATAAAACATTTATTATATTT
1 TTATATTTAATACAATAAAACATTTATTATATTT
7059850 ATGATAATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (36 bp):
TTATATTTAATACAATAAAACATTTATTATATTTTT
Found at i:7060906 original size:24 final size:25
Alignment explanation
Indices: 7060852--7060915 Score: 78
Period size: 24 Copynumber: 2.6 Consensus size: 25
7060842 TAGCTTATTT
*
7060852 TATTAAAT-AAAAAAATTTAAAATA
1 TATTAAATCAAATAAATTTAAAATA
* *
7060876 TAATAAATCAAATACATTTAAAA-A
1 TATTAAATCAAATAAATTTAAAATA
*
7060900 TATTAAAACAAATAAA
1 TATTAAATCAAATAAA
7060916 AAATGTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (25 bp):
TATTAAATCAAATAAATTTAAAATA
Found at i:7060977 original size:22 final size:20
Alignment explanation
Indices: 7060952--7061013 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 20
7060942 CAATACACAA
7060952 ATTAAAAATATAATAAAAAGTG
1 ATTAAAAATA-AATAAAAA-TG
*
7060974 ATTATATTAAA-AATTAAAAATG
1 ATTA-A--AAATAAATAAAAATG
7060996 ATTAAAAATAAAATAAAA
1 ATTAAAAAT-AAATAAAA
7061014 TATAAATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
19 3 0.09
21 8 0.24
22 10 0.30
23 8 0.24
24 1 0.03
25 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
ATTAAAAATAAATAAAAATG
Found at i:7064570 original size:20 final size:21
Alignment explanation
Indices: 7064520--7064570 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
7064510 AAATACAATG
7064520 AATATCGATACTTTTTAAATA
1 AATATCGATACTTTTTAAATA
*
7064541 AATATTGATA-TTTTTCAAA-A
1 AATATCGATACTTTTT-AAATA
*
7064561 AGTATCGATA
1 AATATCGATA
7064571 AAATAGTATC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (21 bp):
AATATCGATACTTTTTAAATA
Found at i:7064835 original size:124 final size:124
Alignment explanation
Indices: 7064615--7065236 Score: 1235
Period size: 124 Copynumber: 5.0 Consensus size: 124
7064605 TATTTTCCAA
7064615 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
1 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
7064680 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
66 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
7064739 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
1 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
7064804 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
66 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
7064863 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
1 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
7064928 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
66 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
7064987 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
1 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
7065052 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
66 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
7065111 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
1 AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
*
7065176 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTAGCACCCCAAACCCGGCCC
66 TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
7065235 AG
1 AG
7065237 ACGTTATGGT
Statistics
Matches: 497, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 497 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (124 bp):
AGTGCAGAAAATTTTCCTAAGGTGGCTTTTAAGTTCTAGCATGTTCTAAACTAACTTAGAATGAC
TTTATAGCAATTTTTAATGAATTCATATGCTTGAATATGTACCACCCCAAACCCGGCCC
Found at i:7068863 original size:40 final size:40
Alignment explanation
Indices: 7068780--7068999 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
7068770 ACCCAAGTAT
** * *
7068780 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
7068818 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
7068858 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
7068898 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
7068938 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
7068978 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
7069000 CATTCGAATA
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 125 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:7077379 original size:93 final size:93
Alignment explanation
Indices: 7077220--7077390 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
7077210 GCCCCTAAGT
* * * *
7077220 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACACAA
*
7077285 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * * *
7077313 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTTGGACTCAACACAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACACAA
7077378 CGAGCTCGGATGC
66 CGAGCTCGGATGC
7077391 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACACAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:7077380 original size:46 final size:46
Alignment explanation
Indices: 7077215--7077387 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
7077205 AACCCGCCCC
* * * * *
7077215 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * *
7077261 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * *
7077309 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* *
7077354 TAAGTGAACTTGGACTCAACACAACGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
7077388 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.54
47 29 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:7085811 original size:27 final size:27
Alignment explanation
Indices: 7085682--7086198 Score: 341
Period size: 27 Copynumber: 19.6 Consensus size: 27
7085672 TACCCTACAG
* * * *
7085682 GGGTATGTCGGTCATTTTAC-ACTATAA
1 GGGTATTTCGGTAATTTTACAAAT-TGA
* * **
7085709 GGGTATTTCGGTAATTTTA-TACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-TGA
* *
7085736 GGGTATTTCGATAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAATTGA
* *
7085763 GGGTGTTTCGGTAATTTTACAAATTAA
1 GGGTATTTCGGTAATTTTACAAATTGA
*
7085790 GGGTTTTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
*
7085817 GGGTGCTTT-GGTAATTTTACAAATTGA
1 GGGT-ATTTCGGTAATTTTACAAATTGA
* * * *
7085844 GGGTGTTTTGATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * *
7085871 GGGTGTTTAGGTAATTTCACAAATT-A
1 GGGTATTTCGGTAATTTTACAAATTGA
* * *
7085897 GAGGTATTTCGATAATTTTATAAATCGA
1 G-GGTATTTCGGTAATTTTACAAATTGA
* ** * *
7085925 TGGTATTTTAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
7085951 GGGTATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * * *
7085978 GGGTGTTTC----ATTGT-GAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* *
7086000 GAGTATTTCGATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * * * *
7086027 GGGTGTTT---T-AGTGT-GAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* ** *
7086049 TGGTATTTCTATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* *
7086076 GGGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
** * *
7086103 GGGTATTTCAATAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * * * *
7086129 GAGTATTTTGATAAATTTT-CAAATCGG
1 GGGTATTTCGGT-AATTTTACAAATTGA
* *
7086156 GGGTATTTCGATAATTTCACAAATTG-
1 GGGTATTTCGGTAATTTTACAAATTGA
*
7086182 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
7086199 CTCTTTATTA
Statistics
Matches: 391, Mismatches: 79, Indels: 41
0.77 0.15 0.08
Matches are distributed among these distances:
22 25 0.06
23 7 0.02
24 1 0.00
25 1 0.00
26 70 0.18
27 281 0.72
28 6 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATTGA
Found at i:7086015 original size:49 final size:48
Alignment explanation
Indices: 7085945--7086079 Score: 198
Period size: 49 Copynumber: 2.8 Consensus size: 48
7085935 GTAATTTCAC
* *
7085945 AATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTGTTTCATTGTGA
1 AATCGA-GGTATTTCGATAATTTTACAAATTGAGGGTGTTTCAGTGTGA
*
7085994 AATCGAGAGTATTTCGATAATTTTACAAATTGAGGGTGTTTTAGTGTGA
1 AATCGAG-GTATTTCGATAATTTTACAAATTGAGGGTGTTTCAGTGTGA
* *
7086043 AATCGATGGTATTTCTATAATTTTACAAATCGAGGGT
1 AATCGA-GGTATTTCGATAATTTTACAAATTGAGGGT
7086080 ATTTTGGTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
48 1 0.01
49 77 0.97
50 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.39
Consensus pattern (48 bp):
AATCGAGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCAGTGTGA
Found at i:7090722 original size:18 final size:19
Alignment explanation
Indices: 7090699--7090735 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
7090689 CAACGATATC
7090699 AAAAACATA-AAAATCATT
1 AAAAACATACAAAATCATT
7090717 AAAAACATATCAAAATCAT
1 AAAAACATA-CAAAATCAT
7090736 ACCTAATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.65, C:0.14, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAACATACAAAATCATT
Found at i:7097542 original size:17 final size:19
Alignment explanation
Indices: 7097520--7097565 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
7097510 ACATACATAC
7097520 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
7097537 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
7097556 AATACTAATT
1 AATAATAATT
7097566 AAAATTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:7103822 original size:50 final size:50
Alignment explanation
Indices: 7103758--7103857 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
7103748 ATAAAGAAAA
*
7103758 AACTACATTCACCTATCCTTATGGAACATTTGCTTTTAGAAGAATGCCAT
1 AACTACATTCACCTATCCTTATGGAACATTTGCTTTCAGAAGAATGCCAT
7103808 AACTACATTCACCTATCCTTATGGAACATTTGCTTTCAGAAGAATGCCAT
1 AACTACATTCACCTATCCTTATGGAACATTTGCTTTCAGAAGAATGCCAT
7103858 TTGGGTTATG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (50 bp):
AACTACATTCACCTATCCTTATGGAACATTTGCTTTCAGAAGAATGCCAT
Found at i:7106469 original size:37 final size:37
Alignment explanation
Indices: 7106418--7106497 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
7106408 CTTATTACGA
* * *
7106418 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
* *
7106455 GGTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
7106492 AGTCTT
1 AGTCTT
7106498 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:7106694 original size:47 final size:47
Alignment explanation
Indices: 7106616--7107167 Score: 944
Period size: 47 Copynumber: 11.7 Consensus size: 47
7106606 CCCTTCGGGA
* * * * * * *
7106616 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
7106663 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7106710 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7106757 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7106804 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7106851 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7106898 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7106945 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7106992 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7107039 CTTATCATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7107086 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
7107133 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCATATATATACACT-TTCACATTCATCACAT
7107168 AGAATCCTAA
Statistics
Matches: 486, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 1 0.00
47 485 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7112429 original size:16 final size:16
Alignment explanation
Indices: 7112392--7112423 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7112382 AGCTGAAATA
7112392 TCGAAATGCCGAAAAG
1 TCGAAATGCCGAAAAG
7112408 TCGAAATGCCGAAAAG
1 TCGAAATGCCGAAAAG
7112424 CTGAAAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.12
Consensus pattern (16 bp):
TCGAAATGCCGAAAAG
Found at i:7112695 original size:29 final size:29
Alignment explanation
Indices: 7112652--7112758 Score: 128
Period size: 29 Copynumber: 3.8 Consensus size: 29
7112642 TGAATATGAC
* *
7112652 TGGGCC-AACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATACATGTGATT
* *
7112680 TGGGCCTAATGGGCCATATACAGGTAATT
1 TGGGCCTAATGGGCCATATACATGTGATT
* *
7112709 TGGGCCTAATGGGCCATATGCATATGA-T
1 TGGGCCTAATGGGCCATATACATGTGATT
* *
7112737 TGGGCTTAATGGGCCAGATACA
1 TGGGCCTAATGGGCCATATACA
7112759 AGTATGTGAG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
28 26 0.39
29 41 0.61
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACATGTGATT
Found at i:7112748 original size:28 final size:29
Alignment explanation
Indices: 7112639--7112752 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
7112629 GTGAGCATGA
* * *
7112639 ATATGAATATGA-CTGGGCC-AACGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
*
7112666 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
* ** *
7112695 ATATACAGGTAATTTGGGCCTAATGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
** *
7112724 ATATGCATATGA-TTGGGCTTAATGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
7112752 A
1 A
7112753 GATACAAGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
27 10 0.14
28 22 0.30
29 41 0.56
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (29 bp):
ATATAAATATGATTTGGGCCTAATGGGCC
Found at i:7118560 original size:13 final size:14
Alignment explanation
Indices: 7118521--7118562 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
7118511 AGTTCAAAAC
*
7118521 AAATAAATTATTAA
1 AAATAAATTATAAA
**
7118535 AAATAAAAAATAAA
1 AAATAAATTATAAA
7118549 AAAT-AATTATAAA
1 AAATAAATTATAAA
7118562 A
1 A
7118563 GTTGGGTTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATAAATTATAAA
Found at i:7128426 original size:37 final size:37
Alignment explanation
Indices: 7128376--7128454 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
7128366 TTATTACGAA
* * * *
7128376 GTCTTACCCGGACATAATCTCCACACGAAGTTATCTG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
7128413 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
7128450 GTCTT
1 GTCTT
7128455 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:7128667 original size:37 final size:37
Alignment explanation
Indices: 7128617--7128695 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
7128607 TTATTACGAA
* * *
7128617 GTCTTACCCGGACATAATCTCCATACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTTATCGG
*
7128654 GTCTTACCCGGACAAAATCCCCACACGTAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTTATCGG
7128691 GTCTT
1 GTCTT
7128696 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTTATCGG
Found at i:7128747 original size:241 final size:241
Alignment explanation
Indices: 7128316--7128797 Score: 901
Period size: 241 Copynumber: 2.0 Consensus size: 241
7128306 TATAAACTTG
7128316 GAGTACATACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTT
1 GAGTACATACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTT
*
7128381 ACCCGGACATAATCTCCACACGAAGTTATCTGGTCTTACCCGGACAAAATCCCCACACGTAGTCA
66 ACCCGGACATAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTCA
*
7128446 TCGGGTCTTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACTTTAATCAGTGATAATAT
131 TCGGGTCTTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATAT
7128511 TCTCGCATAAAGCCTGCGGCATTTTAACCCGGATATAGTACTGACA
196 TCTCGCATAAAGCCTGCGGCATTTTAACCCGGATATAGTACTGACA
7128557 GAGTACATACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTT
1 GAGTACATACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTT
* *
7128622 ACCCGGACATAATCTCCATACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTTA
66 ACCCGGACATAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTCA
*
7128687 TCGGGTCTTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATTAGTGATAATAT
131 TCGGGTCTTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATAT
**
7128752 TCTCGCATAAAGCCTGCGGGGTTTTAACCCGGATATAGTACTGACA
196 TCTCGCATAAAGCCTGCGGCATTTTAACCCGGATATAGTACTGACA
7128798 CAAATGCCCT
Statistics
Matches: 234, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 234 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (241 bp):
GAGTACATACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTT
ACCCGGACATAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTCA
TCGGGTCTTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATAT
TCTCGCATAAAGCCTGCGGCATTTTAACCCGGATATAGTACTGACA
Found at i:7129011 original size:47 final size:47
Alignment explanation
Indices: 7128814--7129531 Score: 1168
Period size: 47 Copynumber: 15.2 Consensus size: 47
7128804 CCCTTCGGGA
* * * * * * * *
7128814 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
* * * * *
7128861 CCTGTCACATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACGTAT--ATACACTTTCACATTCATCACATCGGCCATTAGAC
*
7128910 CTTATCACATATATACACTTTCACATTCATCACACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCAT--CACATCGGCCATTAGAC
7128959 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
7129006 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
7129053 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
*
7129100 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
* * *
7129147 CGTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
*
7129194 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
* * *
7129241 CTTATCACATATATATA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
*
7129287 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGAC
7129336 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
7129383 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
7129430 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
7129477 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
7129524 CTTATCAC
1 CTTATCAC
7129532 ACTAAATTAT
Statistics
Matches: 636, Mismatches: 28, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
46 37 0.06
47 471 0.74
48 8 0.01
49 120 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGAC
Found at i:7133497 original size:81 final size:81
Alignment explanation
Indices: 7133342--7133498 Score: 278
Period size: 81 Copynumber: 1.9 Consensus size: 81
7133332 CAATTGCATC
*
7133342 TCAAACACATATTAAGCACATATTAATATGTATAATTCACATCATCAACCCACATATTTGTAACC
1 TCAAACACATATTAAGCACATATTAACATGTATAATTCACATCATCAACCCACATATTTGTAACC
***
7133407 CATGTTTTCATTCATA
66 CACAATTTCATTCATA
7133423 TCAAACACATATTAAGCACATATTAACATGTATAATTCACATCATCAACCCACATATTTGTAACC
1 TCAAACACATATTAAGCACATATTAACATGTATAATTCACATCATCAACCCACATATTTGTAACC
7133488 CACAATTTCAT
66 CACAATTTCAT
7133499 CCATGTATAA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.32
Consensus pattern (81 bp):
TCAAACACATATTAAGCACATATTAACATGTATAATTCACATCATCAACCCACATATTTGTAACC
CACAATTTCATTCATA
Found at i:7134285 original size:40 final size:40
Alignment explanation
Indices: 7134253--7134691 Score: 808
Period size: 40 Copynumber: 11.0 Consensus size: 40
7134243 CCAGCATGAT
* * * * *
7134253 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
*
7134293 TGCTCTTCG-GAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGAG-ACTTAGCCCGGATACATCACTAGCACGAA
7134333 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
7134373 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
7134413 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
7134453 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
7134493 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
7134533 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
7134573 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
7134613 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
7134653 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGA
7134692 TTAGTAACTC
Statistics
Matches: 391, Mismatches: 6, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
39 1 0.00
40 389 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.22
Consensus pattern (40 bp):
TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:7134848 original size:15 final size:15
Alignment explanation
Indices: 7134828--7134857 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7134818 GAATACCCAT
7134828 GCACATTTAACAATA
1 GCACATTTAACAATA
7134843 GCACATTTAACAATA
1 GCACATTTAACAATA
7134858 AATCATGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (15 bp):
GCACATTTAACAATA
Found at i:7137162 original size:37 final size:37
Alignment explanation
Indices: 7137112--7137190 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
7137102 TTATTACAAA
* * *
7137112 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
7137149 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
7137186 GTCTT
1 GTCTT
7137191 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:7137432 original size:47 final size:47
Alignment explanation
Indices: 7137309--7137627 Score: 444
Period size: 47 Copynumber: 6.7 Consensus size: 47
7137299 CCCTTCGGGA
* * * * * * *
7137309 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
7137357 CTGTCA-CATATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-T-ATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7137405 CTTATCATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7137452 CCTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7137501 CTTATC-TCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAT-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
7137548 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7137595 CTTATCACATATATACACTTTCACATTCATCAC
1 CTTATCATATATATACACTTTCACATTCATCAC
7137628 GTAGAATCCT
Statistics
Matches: 248, Mismatches: 16, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
46 2 0.01
47 160 0.65
48 5 0.02
49 80 0.32
50 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7137474 original size:96 final size:95
Alignment explanation
Indices: 7137309--7137627 Score: 480
Period size: 96 Copynumber: 3.3 Consensus size: 95
7137299 CCCTTCGGGA
* * * * * * * * *
7137309 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAT
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATA-ATAC
7137374 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
7137405 CTTATCATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATACATAC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATA-ATAC
7137470 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
7137501 CTTATC-TCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTAT-ATAC
1 CTTATCAT-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATAATAC
7137564 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
7137595 CTTATCACATATATACACTTTCACATTCATCAC
1 CTTATCATATATATACACTTTCACATTCATCAC
7137628 GTAGAATCCT
Statistics
Matches: 206, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
94 66 0.32
95 1 0.00
96 139 0.67
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATAATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7137569 original size:143 final size:142
Alignment explanation
Indices: 7137311--7137627 Score: 474
Period size: 143 Copynumber: 2.2 Consensus size: 142
7137301 CTTCGGGACT
* * * * * * *
7137311 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATATAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACA-ATATATACAC
*
7137376 TTTCACATTCATCACATCGGCCATTAGGCCTTATCATATACATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACTTTCACATTCATCACATC
7137441 GGCCATTAGGCCC
130 GGCCATTAGGCCC
* * *
7137454 TATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC-ATATATACA
1 TATCACATAT--ATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACAATATATACA
* *
7137518 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACAT
64 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACTTTCACATTCATCACAT
*
7137583 CGGCCATTAGGCCT
129 CGGCCATTAGGCCC
7137597 TATCACATATATACACTTTCACATTCATCAC
1 TATCACATATATACACTTTCACATTCATCAC
7137628 GTAGAATCCT
Statistics
Matches: 158, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
141 21 0.13
143 102 0.65
145 35 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (142 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACAATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACTTTCACATTCATCACATCG
GCCATTAGGCCC
Found at i:7141383 original size:28 final size:28
Alignment explanation
Indices: 7141339--7141393 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
7141329 CTGATCCAAG
7141339 TAAAATTTCAGCAATTTTGGATTGGAAT
1 TAAAATTTCAGCAATTTTGGATTGGAAT
* *
7141367 TAAAATTTTAGCTATTTTGGATTGGAA
1 TAAAATTTCAGCAATTTTGGATTGGAA
7141394 ACCTCCGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (28 bp):
TAAAATTTCAGCAATTTTGGATTGGAAT
Found at i:7144702 original size:40 final size:40
Alignment explanation
Indices: 7144646--7144751 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 40
7144636 TATAATGATA
* *
7144646 TTCGACTATAATTGGCACTAAGTGTGC-AGTTTAATATAGC
1 TTCGACTATAAATGGCACTAAGTGTGCGAG-TTAACATAGC
**
7144686 TTCGACTATAAATGGCACTAAGTGTGCGAGTTGGCATAGC
1 TTCGACTATAAATGGCACTAAGTGTGCGAGTTAACATAGC
* *
7144726 TTCCATTATAGAA-GGCACTAAGTGTG
1 TTCGACTATA-AATGGCACTAAGTGTG
7144752 TGATACCGAC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 54 0.93
41 4 0.07
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (40 bp):
TTCGACTATAAATGGCACTAAGTGTGCGAGTTAACATAGC
Found at i:7146498 original size:68 final size:66
Alignment explanation
Indices: 7146424--7146595 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
7146414 CATCATGTGT
* * * *
7146424 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
7146487 TGTAG
62 TGTAG
** * *
7146492 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
7146557 AG
65 AG
* * * *
7146559 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
7146596 AGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:7146529 original size:64 final size:64
Alignment explanation
Indices: 7146448--7146631 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
7146438 AGACATTATG
* * * *
7146448 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
7146512 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
7146577 AA
63 AA
* * *
7146579 AT-TGGCTAGGTCACATGAGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGAGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
7146632 CGAACTACAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:7152977 original size:27 final size:27
Alignment explanation
Indices: 7152947--7153000 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
7152937 TGTCAGAACA
7152947 GTAAAATTTTGAACTTTTTCTTGAAAT
1 GTAAAATTTTGAACTTTTTCTTGAAAT
7152974 GTAAAATTTTGAACTTTTTCTTGAAAT
1 GTAAAATTTTGAACTTTTTCTTGAAAT
7153001 AAAGATCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.48
Consensus pattern (27 bp):
GTAAAATTTTGAACTTTTTCTTGAAAT
Found at i:7156966 original size:40 final size:40
Alignment explanation
Indices: 7156922--7157951 Score: 1882
Period size: 40 Copynumber: 25.8 Consensus size: 40
7156912 AGCATGATTA
* * * * * *
7156922 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
7156962 CTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
*
7157002 CTCTTCG-GAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGAG-ACTTAGCCCGGATACATCACTAGCACGAATG
*
7157042 CTCTTCGAGACATAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
*
7157082 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAAAG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157122 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157162 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157202 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157242 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157282 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157322 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157362 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157402 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157442 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157482 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157522 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157562 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157602 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157642 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157682 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157722 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157762 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* *
7157802 CTCTTCGGGACTTAGCCCGGATACATTACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
*
7157842 CTCTTTGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
7157882 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
*
7157922 CTCTTCGGGACTTAGCCCGGATACATCACT
1 CTCTTCGAGACTTAGCCCGGATACATCACT
7157952 CTCAATTCTC
Statistics
Matches: 964, Mismatches: 24, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
39 1 0.00
40 962 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:7159216 original size:37 final size:37
Alignment explanation
Indices: 7159166--7159241 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
7159156 TTATTACGAA
* * *
7159166 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
7159203 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
7159240 GT
1 GT
7159242 TTTTAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:7159488 original size:49 final size:47
Alignment explanation
Indices: 7159363--7159538 Score: 253
Period size: 47 Copynumber: 3.7 Consensus size: 47
7159353 CCCTTTGAGA
* * * * * *
7159363 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7159410 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7159457 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7159506 CTTATCACATATATACACTTTCACATTCATCAC
1 CTTATCACATATATACACTTTCACATTCATCAC
7159539 GTAGAATCCT
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
47 70 0.60
49 46 0.40
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7159525 original size:96 final size:94
Alignment explanation
Indices: 7159363--7159538 Score: 262
Period size: 96 Copynumber: 1.9 Consensus size: 94
7159353 CCCTTTGAGA
* * * *
7159363 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
7159428 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * *
7159457 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
7159522 ACTTTCACATTCATCAC
64 ACTTTCACATTCATCAC
7159539 GTAGAATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 10 0.14
95 1 0.01
96 61 0.85
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:7160920 original size:63 final size:63
Alignment explanation
Indices: 7160843--7161384 Score: 1084
Period size: 63 Copynumber: 8.6 Consensus size: 63
7160833 GTATAGTTAC
7160843 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7160906 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7160969 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7161032 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7161095 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7161158 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7161221 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7161284 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7161347 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAG
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAG
7161385 GGATGCACTA
Statistics
Matches: 479, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 479 1.00
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (63 bp):
TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
Found at i:7161163 original size:189 final size:189
Alignment explanation
Indices: 7160843--7161547 Score: 1212
Period size: 189 Copynumber: 3.6 Consensus size: 189
7160833 GTATAGTTAC
7160843 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
7160908 GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTTGG
66 GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTTGG
7160973 ATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
131 ATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7161032 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
7161097 GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTTGG
66 GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTTGG
7161162 ATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
131 ATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
7161221 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
7161286 GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTTGG
66 GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTTGG
7161351 ATTTAAGCACTATGTGTGTGAATTAATTTCTGAGGGATGCACTAAGTGTGCGAATTTGATACTGA
131 ATTTAAGCACTATGTGTGTGAATTAATTTCT----GA-GCACTAAGTGTGCGAA--TG----TG-
7161416 CCATTAAGTGTGCGAG
184 ----T-A-----CGAG
7161432 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
1 TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
7161497 GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAA
66 GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAA
7161548 GTCAGTTATT
Statistics
Matches: 494, Mismatches: 0, Indels: 22
0.96 0.00 0.04
Matches are distributed among these distances:
189 350 0.71
193 2 0.00
194 16 0.03
196 2 0.00
200 2 0.00
205 1 0.00
206 1 0.00
211 120 0.24
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (189 bp):
TTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTT
GGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAGTTGG
ATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAATGTGTACGAG
Found at i:7161527 original size:63 final size:63
Alignment explanation
Indices: 7161423--7161547 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
7161413 TGACCATTAA
*
7161423 GTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAAT
1 GTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAAT
7161486 GTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAA
1 GTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAA
7161548 GTCAGTTATT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.34
Consensus pattern (63 bp):
GTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAAT
Found at i:7162141 original size:38 final size:38
Alignment explanation
Indices: 7162087--7162203 Score: 171
Period size: 38 Copynumber: 3.1 Consensus size: 38
7162077 TAAGATTTCA
*
7162087 GGTTATAATTCCGCAGGCTTCGTGCTGGTCTTATATCCG
1 GGTTA-AATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
*
7162126 GGTTAAATCTCGCAGGCTTCGTGCTGGTCTTATATCCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
* * * *
7162164 GGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATTCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
7162202 GG
1 GG
7162204 CCTTTAGGCC
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 66 0.93
39 5 0.07
ACGTcount: A:0.17, C:0.22, G:0.27, T:0.33
Consensus pattern (38 bp):
GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
Found at i:7162589 original size:27 final size:27
Alignment explanation
Indices: 7162528--7162581 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
7162518 ATTAGGCATG
7162528 AACTTATAATGAAGTGACATATTCGAT
1 AACTTATAATGAAGTGACATATTCGAT
7162555 AACTTATAATGAAGTGACATATTCGAT
1 AACTTATAATGAAGTGACATATTCGAT
7162582 TGTATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (27 bp):
AACTTATAATGAAGTGACATATTCGAT
Found at i:7164410 original size:93 final size:93
Alignment explanation
Indices: 7164299--7164469 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
7164289 GCCCATAAGT
* * * *
7164299 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
7164364 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
7164392 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
7164457 CGAGTTCGGATGC
66 CGAGCTCGGATGC
7164470 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:7164466 original size:46 final size:46
Alignment explanation
Indices: 7164291--7164466 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
7164281 TGTAACCCGC
* * * *
7164291 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
7164337 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
7164387 CTC-T---CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
*
7164430 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
7164467 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.59
47 27 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:7166036 original size:80 final size:80
Alignment explanation
Indices: 7165933--7166140 Score: 337
Period size: 80 Copynumber: 2.6 Consensus size: 80
7165923 TCTTCGGAAT
* * *
7165933 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
7165997 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
7166012 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
7166077 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* ** * *
7166092 TTAGCCCGGATAAAATCACTAGCATAAAGGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
7166141 ATATCATTCA
Statistics
Matches: 120, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 4 0.03
80 116 0.97
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:7166125 original size:40 final size:41
Alignment explanation
Indices: 7165952--7166143 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 41
7165942 TATAACCACA
* * * *
7165952 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
* *
7165992 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
* * * *
7166032 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
* *
7166072 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
* * *
7166112 AGCATAAAGGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
7166144 TCATTCAAAT
Statistics
Matches: 127, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 118 0.93
41 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
Found at i:7168039 original size:18 final size:18
Alignment explanation
Indices: 7168018--7168059 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
7168008 TCGGTGATAG
*
7168018 TTCATACTCATCAAGTAA
1 TTCACACTCATCAAGTAA
7168036 TTCACACTCATCAAGTAA
1 TTCACACTCATCAAGTAA
7168054 TTCACA
1 TTCACA
7168060 TAATTACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (18 bp):
TTCACACTCATCAAGTAA
Found at i:7171430 original size:20 final size:20
Alignment explanation
Indices: 7171401--7171443 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7171391 TTTGGGACAT
* *
7171401 ATTATGATTTTGTCCCTAAA
1 ATTATAATTTTGCCCCTAAA
7171421 ATTATAATTTTGCCCCTAAA
1 ATTATAATTTTGCCCCTAAA
7171441 ATT
1 ATT
7171444 TTACAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (20 bp):
ATTATAATTTTGCCCCTAAA
Found at i:7176856 original size:23 final size:23
Alignment explanation
Indices: 7176830--7176875 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7176820 ACCTGTAGAG
*
7176830 ATTAAATAAAACT-AATCAAATTA
1 ATTAAA-AAAACTAAACCAAATTA
*
7176853 ATTAAAATAACTAAACCAAATTA
1 ATTAAAAAAACTAAACCAAATTA
7176876 CACCAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (23 bp):
ATTAAAAAAACTAAACCAAATTA
Found at i:7182850 original size:79 final size:81
Alignment explanation
Indices: 7182711--7182898 Score: 242
Period size: 79 Copynumber: 2.4 Consensus size: 81
7182701 TATTTGAATG
*
7182711 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGC
7182775 ATTTGTGCGAGATACT
66 ATTTGTGCGAGATACT
* * * **
7182791 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAG
*
7182852 GCATTTGTGCGAGTTACT
64 GCATTTGTGCGAGATACT
* *
7182870 ATAACCGGGCTATGTCCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
7182899 AACGAGGAGC
Statistics
Matches: 94, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 34 0.36
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGC
ATTTGTGCGAGATACT
Found at i:7182912 original size:40 final size:40
Alignment explanation
Indices: 7182715--7182898 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
7182705 TGAATGATAT
* * * *
7182715 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
7182755 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
7182795 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
7182833 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
7182874 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
7182899 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:7182920 original size:79 final size:79
Alignment explanation
Indices: 7182715--7182931 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
7182705 TGAATGATAT
** * * * **
7182715 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
7182778 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
7182795 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
7182860 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
7182874 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
7182932 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:7185540 original size:21 final size:18
Alignment explanation
Indices: 7185495--7185542 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
7185485 TAACTTGATC
7185495 TTTTCT-AATTCTTTCCA
1 TTTTCTCAATTCTTTCCA
7185512 TTTCTCTCAATTCTTTTCTCA
1 TTT-TCTCAATTC-TTTC-CA
7185533 TTCTTCTCAA
1 TT-TTCTCAA
7185543 GGTTTTCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.12
18 3 0.12
19 5 0.19
20 4 0.15
21 10 0.38
22 1 0.04
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTCTCAATTCTTTCCA
Found at i:7188682 original size:23 final size:23
Alignment explanation
Indices: 7188627--7188684 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
7188617 ATCCCAGCGT
*
7188627 AGCTGCTAACAGTAACACAGCAA
1 AGCTGCTAATAGTAACACAGCAA
*
7188650 AGCTGCTAATAGTAACGCAGCAA
1 AGCTGCTAATAGTAACACAGCAA
7188673 AGCTGCTAATAG
1 AGCTGCTAATAG
7188685 CGGTAAACGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (23 bp):
AGCTGCTAATAGTAACACAGCAA
Found at i:7188708 original size:27 final size:27
Alignment explanation
Indices: 7188669--7188732 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
7188659 TAGTAACGCA
** *
7188669 GCAAAGCTGCTAATAGCGGTAA-ACGTG
1 GCAAAGCCACTAATAGCAG-AATACGTG
* *
7188696 GCATAGCCACTAATATCAGAATACGTG
1 GCAAAGCCACTAATAGCAGAATACGTG
7188723 GCAAAGCCAC
1 GCAAAGCCAC
7188733 CAGAACCGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
GCAAAGCCACTAATAGCAGAATACGTG
Found at i:7190258 original size:27 final size:27
Alignment explanation
Indices: 7190195--7190271 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
7190185 AGAGCACCAA
* * ** *
7190195 AAAGGCTTCCTTTTCATAGTTTTTCAT
1 AAAGGCTTCATTTTCATAGATTGCCAC
* *
7190222 AAATGTTTCATTTTCATAGATTGCCAC
1 AAAGGCTTCATTTTCATAGATTGCCAC
*
7190249 AAAGGCTTCATTTTCATAAATTG
1 AAAGGCTTCATTTTCATAGATTG
7190272 TTTCTAGTGT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.43
Consensus pattern (27 bp):
AAAGGCTTCATTTTCATAGATTGCCAC
Found at i:7195177 original size:43 final size:44
Alignment explanation
Indices: 7195087--7195178 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
7195077 GGACATGGTC
* * * *
7195087 ATGTGGCTAGAGCATGTACAATTCAAAAATAGGGTCACATGGCT
1 ATGTCGCTAGACCATGTACAATTCAAAAATAAGGTCACACGGCT
* * *
7195131 ATGTCGCTAGACCATGTGCAATTC-GAAATAAGGTCACACGGTT
1 ATGTCGCTAGACCATGTACAATTCAAAAATAAGGTCACACGGCT
7195174 ATGTC
1 ATGTC
7195179 ATCAAGCTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 20 0.49
44 21 0.51
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
ATGTCGCTAGACCATGTACAATTCAAAAATAAGGTCACACGGCT
Found at i:7200619 original size:49 final size:49
Alignment explanation
Indices: 7200566--7200798 Score: 288
Period size: 49 Copynumber: 4.7 Consensus size: 49
7200556 CTGGTACGCA
7200566 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* ** * *
7200615 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * * *
7200665 TAGTAGCCTGCACTTAGTAGTAACACACGTGATCGAAGTTA-CCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACT-ACACATGTGA-CCAA-TTATCC-GGTACACG
* * *
7200717 TAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
*
7200766 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
7200799 TCACAATAGA
Statistics
Matches: 152, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
49 70 0.46
50 36 0.24
51 20 0.13
52 26 0.17
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:7200734 original size:102 final size:98
Alignment explanation
Indices: 7200566--7200798 Score: 306
Period size: 102 Copynumber: 2.3 Consensus size: 98
7200556 CTGGTACGCA
* * *
7200566 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAATAGCCTACACTTA
* * *
7200631 GTACTACACATGTGACCTAACCATCTGATACACG
66 GTACTACACATGCGACC-AACAATCCGATACACG
* * * *
7200665 TAGTAGCCTGCACTTAGTAGTAACACACGTGATCGAAGTTA-CCGGGTACGCATAATAGCCTGCA
1 TAGTAGCCTGCACTTAGTACT-ACACACGTGA-CCAA-TTATCC-GGTACACATAATAGCCTACA
* *
7200729 CTTAGTACTACACATGCGACCAATAATCCGGTACACG
62 CTTAGTACTACACATGCGACCAACAATCCGATACACG
7200766 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
7200799 TCACAATAGA
Statistics
Matches: 116, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
99 21 0.18
100 19 0.16
101 37 0.32
102 39 0.34
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAATAGCCTACACTTA
GTACTACACATGCGACCAACAATCCGATACACG
Found at i:7206443 original size:27 final size:27
Alignment explanation
Indices: 7206399--7206560 Score: 202
Period size: 27 Copynumber: 6.1 Consensus size: 27
7206389 GGATGTTACA
* *
7206399 TACCACATAAGGGAAAAACAATCATTG
1 TACCACATAAGGGCAAAACAATCATTT
* * *
7206426 TACCACATAAAGGTAAAACAGTCATTT
1 TACCACATAAGGGCAAAACAATCATTT
* * *
7206453 TACCATATAAGGGCAAAATAGTCATTT
1 TACCACATAAGGGCAAAACAATCATTT
* *
7206480 TACCAC--AAGGGCAAAATAGTCATTT
1 TACCACATAAGGGCAAAACAATCATTT
*
7206505 TACCACATAAAGGCAAAACAATCATTT
1 TACCACATAAGGGCAAAACAATCATTT
*
7206532 TACCACATAAGGGCAAAATAATCATTT
1 TACCACATAAGGGCAAAACAATCATTT
7206559 TA
1 TA
7206561 TCAATTAGGG
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
25 25 0.21
27 94 0.79
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (27 bp):
TACCACATAAGGGCAAAACAATCATTT
Found at i:7212789 original size:27 final size:27
Alignment explanation
Indices: 7212730--7212881 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
7212720 TAAATTGTAC
*
7212730 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
7212758 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
7212785 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
7212812 AGCACTAAGTCTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
7212840 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
7212867 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7212882 GACTTAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
27 70 0.62
28 42 0.38
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Done.