Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 220 of 276
Found at i:73140812 original size:63 final size:62
Alignment explanation
Indices: 73140745--73140892 Score: 163
Period size: 63 Copynumber: 2.4 Consensus size: 62
73140735 GCTTGTTATG
* * *
73140745 GTGCTTGTGTAAAATAAACTAGTGCTAAATGTGTTGATGCAAGGAATG-GTTGTGCGTGCTGT
1 GTGCTTGTGTAAAATAAACTAGAGCTAAAGGTGTTGATGCAAGGAATGAG-TGTGCATGCTGT
* * * **
73140807 AGTGCTTATGTAAAATAAATTAGAGCTGAAGGTGTTGATGTGAGGAATGAGTGTGCATGCTGT
1 -GTGCTTGTGTAAAATAAACTAGAGCTAAAGGTGTTGATGCAAGGAATGAGTGTGCATGCTGT
* * *
73140870 GATGTTTGTGTCATATAAACTAG
1 G-TGCTTGTGTAAAATAAACTAG
73140893 GTTAGAACCA
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
62 1 0.01
63 68 0.97
64 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.30, T:0.34
Consensus pattern (62 bp):
GTGCTTGTGTAAAATAAACTAGAGCTAAAGGTGTTGATGCAAGGAATGAGTGTGCATGCTGT
Found at i:73156229 original size:27 final size:27
Alignment explanation
Indices: 73156182--73156236 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
73156172 ATACTTGAAT
*
73156182 TCATTTCAAGTTTCACATCTCATTTCA
1 TCATTTCAAGTTTCACATCTCATCTCA
* **
73156209 TCATTTCATGTTTCATTTCTCATCTCA
1 TCATTTCAAGTTTCACATCTCATCTCA
73156236 T
1 T
73156237 ATTCCTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.25, G:0.04, T:0.49
Consensus pattern (27 bp):
TCATTTCAAGTTTCACATCTCATCTCA
Found at i:73156274 original size:43 final size:42
Alignment explanation
Indices: 73156224--73156308 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 42
73156214 TCATGTTTCA
* *
73156224 TTTCTCATCTCATATTCCTTTCTCAA-CTTTTTCATTTCAATAT
1 TTTCTCATCTCATATTCATTTCT-AATCTTTTCCA-TTCAATAT
73156267 TTTCTCATCTCATATTCATTTCTAATCTTTTCCATTCAATAT
1 TTTCTCATCTCATATTCATTTCTAATCTTTTCCATTCAATAT
73156309 CAATCACATT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
42 10 0.26
43 29 0.74
ACGTcount: A:0.22, C:0.25, G:0.00, T:0.53
Consensus pattern (42 bp):
TTTCTCATCTCATATTCATTTCTAATCTTTTCCATTCAATAT
Found at i:73159850 original size:11 final size:11
Alignment explanation
Indices: 73159834--73159859 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73159824 CACATTATTT
73159834 CATGTCATTCA
1 CATGTCATTCA
73159845 CATGTCATTCA
1 CATGTCATTCA
73159856 CATG
1 CATG
73159860 AGTTCGATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (11 bp):
CATGTCATTCA
Found at i:73161800 original size:13 final size:13
Alignment explanation
Indices: 73161782--73161830 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
73161772 AAACAAAATA
73161782 ATTATATGAAGTG
1 ATTATATGAAGTG
* *
73161795 ATTATATGGAAATA
1 ATTATAT-GAAGTG
73161809 ATTATATGAAGTG
1 ATTATATGAAGTG
*
73161822 GTT-TATGAA
1 ATTATATGAA
73161831 ATGTTCATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 6 0.20
13 13 0.43
14 11 0.37
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (13 bp):
ATTATATGAAGTG
Found at i:73161814 original size:14 final size:14
Alignment explanation
Indices: 73161777--73161816 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
73161767 CAGGTAAACA
73161777 AAATAATTATAT-G
1 AAATAATTATATGG
* *
73161790 AAGTGATTATATGG
1 AAATAATTATATGG
73161804 AAATAATTATATG
1 AAATAATTATATG
73161817 AAGTGGTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (14 bp):
AAATAATTATATGG
Found at i:73164480 original size:102 final size:103
Alignment explanation
Indices: 73164290--73164481 Score: 280
Period size: 102 Copynumber: 1.9 Consensus size: 103
73164280 AGCTTTCTTC
* *
73164290 TTCTTTCTTTTTAATGAATGTTTTTAACATATTAACTTCCTTAGTTAAATGATTAAATAATAATT
1 TTCTTTCTTTTTAATGAATGTTTTTAACATATTAAATTCCTTAGTTAAATGATTAAATAATAATA
* * ****
73164355 ATTTCACATTTATATTTTTATTTCATGTTGTTTTAAGT
66 ATTTCACATTGAGATCCCAATTTCATGTTGTTTTAAGT
*
73164393 TTCTTT-TTTTTAATGAATGTTTTTAACATATTAAATTCCTTAGTTAAATTATTAAATAATAATA
1 TTCTTTCTTTTTAATGAATGTTTTTAACATATTAAATTCCTTAGTTAAATGATTAAATAATAATA
73164457 ATTTCATCATTGAGA-CCCAATTTCA
66 ATTTCA-CATTGAGATCCCAATTTCA
73164482 ATTCCCCTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
102 67 0.85
103 12 0.15
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (103 bp):
TTCTTTCTTTTTAATGAATGTTTTTAACATATTAAATTCCTTAGTTAAATGATTAAATAATAATA
ATTTCACATTGAGATCCCAATTTCATGTTGTTTTAAGT
Found at i:73164577 original size:21 final size:22
Alignment explanation
Indices: 73164532--73164578 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
73164522 TTGTTTCAAG
73164532 TTTTTTTAATTAATAAATATAA
1 TTTTTTTAATTAATAAATATAA
* * *
73164554 TTTTTTTATTTATTAAA-ATCA
1 TTTTTTTAATTAATAAATATAA
73164575 TTTT
1 TTTT
73164579 AATTAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTTTTAATTAATAAATATAA
Found at i:73171757 original size:88 final size:89
Alignment explanation
Indices: 73171608--73171808 Score: 359
Period size: 88 Copynumber: 2.3 Consensus size: 89
73171598 GAGTCGAGTA
73171608 GAATCGAGTCAAAAATTTTCGAGTTAGTCAAGTTGACAAATCCTATTTTAGCAACCGAACTCAAT
1 GAATCGAGTCAAAAATTTTCGAGTTAGTCAAGTTGACAAATCCTATTTTAGCAACCGAACTCAAT
73171673 TTG-AAATTTTTTCGAATCGAATC
66 TTGAAAATTTTTTCGAATCGAATC
* *
73171696 GAATCGAGTCAAAAATTTTTGAGTTAGTCGAGTTGACAAATCCTATTTTAGCAACCGAACTCAAT
1 GAATCGAGTCAAAAATTTTCGAGTTAGTCAAGTTGACAAATCCTATTTTAGCAACCGAACTCAAT
73171761 TTGAAAATTTTTTCGAATCGAATC
66 TTGAAAATTTTTTCGAATCGAATC
**
73171785 GAATCGAGTCAAAAAAATTCGAGT
1 GAATCGAGTCAAAAATTTTCGAGT
73171809 CAAATCGAGT
Statistics
Matches: 107, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
88 66 0.62
89 41 0.38
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (89 bp):
GAATCGAGTCAAAAATTTTCGAGTTAGTCAAGTTGACAAATCCTATTTTAGCAACCGAACTCAAT
TTGAAAATTTTTTCGAATCGAATC
Found at i:73173703 original size:19 final size:16
Alignment explanation
Indices: 73173694--73173724 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73173684 AAATGACAAT
73173694 AAATTATTAAAATAAA
1 AAATTATTAAAATAAA
*
73173710 AATTTATTAAAATAA
1 AAATTATTAAAATAA
73173725 GTGTATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATTATTAAAATAAA
Found at i:73174643 original size:23 final size:24
Alignment explanation
Indices: 73174594--73174665 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 24
73174584 AAAATGTACA
* * *
73174594 AAAATTGTAAAAAGAATATTTTA-
1 AAAATTCTAAAAATATTATTTTAT
*
73174617 AAAATT-TAAAAATATTTTTTTAT
1 AAAATTCTAAAAATATTATTTTAT
*
73174640 AAAATTCTAAAATATATAATTTTAT
1 AAAATTCTAAAA-ATATTATTTTAT
73174665 A
1 A
73174666 TATAATATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 13 0.32
23 12 0.29
24 5 0.12
25 11 0.27
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (24 bp):
AAAATTCTAAAAATATTATTTTAT
Found at i:73177927 original size:16 final size:16
Alignment explanation
Indices: 73177906--73177973 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
73177896 TTTGGTTCGC
73177906 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
73177922 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
73177938 TGTAATGAATTAGAGG
1 TGTATTGGATTAGAGG
73177954 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
73177970 TGTA
1 TGTA
73177974 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:73178227 original size:16 final size:16
Alignment explanation
Indices: 73178190--73178231 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
73178180 TTAATCATAT
*
73178190 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
73178206 TT-AAATATATTATAA
1 TTAAAATATATTATAA
73178221 TTAAAATATAT
1 TTAAAATATAT
73178232 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:73178238 original size:14 final size:15
Alignment explanation
Indices: 73178199--73178240 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
73178189 TTTAAACATA
*
73178199 ATTATTATTAAATAT
1 ATTATAATTAAATAT
73178214 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
73178228 A-TATAATTTAATA
1 ATTATAATTAAATA
73178241 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:73178333 original size:120 final size:120
Alignment explanation
Indices: 73178193--73178674 Score: 752
Period size: 120 Copynumber: 4.0 Consensus size: 120
73178183 ATCATATTTA
* *
73178193 AACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATAATAA
* * *
73178257 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
* * * *
73178313 AACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAATATTATTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATAATAA
* * * *
73178377 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAATTT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
*
73178433 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
* *
73178498 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAATTT
66 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
* *
73178553 AAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
* *
73178618 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAGATT
66 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
73178673 AA
1 AA
73178675 TAATGTAGAT
Statistics
Matches: 346, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 343 0.99
121 3 0.01
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
Found at i:73178337 original size:15 final size:15
Alignment explanation
Indices: 73178309--73178367 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
73178299 ATAAAATATA
73178309 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
73178324 TATTAAATATATTAT
1 AATTAAATATATTAT
73178339 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
73178352 AATTTAATAATATTAT
1 AATTAAAT-ATATTAT
73178368 TAATAATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 9 0.24
14 6 0.16
15 19 0.51
16 3 0.08
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:73178368 original size:44 final size:43
Alignment explanation
Indices: 73178286--73178370 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
73178276 CTCAAATCAT
* *
73178286 AATATATGATACTATAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATATAAAATATAAATTAAAATAATTATTATTA
* *
73178329 AATATATTATAAT-TAAAATATATAATT-TAATAA-TATTATTA
1 AATATATGATAATATAAAATATA-AATTAAAATAATTATTATTA
73178370 A
1 A
73178371 TAATCAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
41 9 0.24
42 13 0.35
43 15 0.41
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (43 bp):
AATATATGATAATATAAAATATAAATTAAAATAATTATTATTA
Found at i:73178514 original size:38 final size:37
Alignment explanation
Indices: 73178467--73178650 Score: 140
Period size: 37 Copynumber: 4.7 Consensus size: 37
73178457 TTAATAAAAA
*
73178467 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTAT
*
73178504 TATATGAATTTAATAAAA-TCATAATA-TATAATACTATAT
1 TATAT-AATTTAATAAAATTCTTAATATTA-AATA-T-TAT
* * * * ** *
73178543 AATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAA
1 TATATAATTT--AATAA-AATTCTT--A-AT-ATTAAATATTAT
*
73178587 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTAT
*
73178624 TATATGAATTTAATAAAA-TCATAATAT
1 TATAT-AATTTAATAAAATTCTTAATAT
73178651 ATAATACTAT
Statistics
Matches: 114, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
36 2 0.02
37 36 0.32
38 32 0.28
39 7 0.06
40 5 0.04
41 6 0.05
42 7 0.06
44 11 0.10
45 2 0.02
46 5 0.04
47 1 0.01
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (37 bp):
TATATAATTTAATAAAATTCTTAATATTAAATATTAT
Found at i:73178616 original size:18 final size:18
Alignment explanation
Indices: 73178450--73178603 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
73178440 TTATTATTAA
73178450 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
73178468 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAAAT
* ****
73178486 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAAAT
73178505 ATATGAATTTAAT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * * *
73178523 -CATAATAT-ATAATACT
1 ATATAATTTAATAAAAAT
* *
73178539 ATATAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
73178558 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
73178570 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
73178588 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
73178604 TTCTTAATAT
Statistics
Matches: 99, Mismatches: 23, Indels: 28
0.66 0.15 0.19
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 2 0.02
15 5 0.05
16 8 0.08
17 16 0.16
18 41 0.41
19 15 0.15
20 3 0.03
21 3 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:73182713 original size:20 final size:20
Alignment explanation
Indices: 73182684--73182739 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
73182674 TTTGTAGCAA
73182684 TAGA-ATATTGTTATATAAAT
1 TAGATATATTGTTATAT-AAT
*
73182704 T-GATATATTGTTATATATT
1 TAGATATATTGTTATATAAT
*
73182723 TAGATATTTTGTTATAT
1 TAGATATATTGTTATAT
73182740 GCTATCTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.16
20 27 0.84
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.54
Consensus pattern (20 bp):
TAGATATATTGTTATATAAT
Found at i:73183778 original size:31 final size:31
Alignment explanation
Indices: 73183743--73183806 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
73183733 AAGATCCCTC
*
73183743 TACTTGGATATTGGTTAAAATATAAACACTT
1 TACTTGGATAATGGTTAAAATATAAACACTT
*
73183774 TACTTGGATAATGGTTAAAATGTAAACACTT
1 TACTTGGATAATGGTTAAAATATAAACACTT
73183805 TA
1 TA
73183807 GTAAATTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (31 bp):
TACTTGGATAATGGTTAAAATATAAACACTT
Found at i:73184401 original size:26 final size:25
Alignment explanation
Indices: 73184356--73184405 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
73184346 TAACACTAGC
* *
73184356 TATGTTTTTAATGTAGTGTTTGTTAT
1 TATGATTTTAATGTAATG-TTGTTAT
*
73184382 TATGATTTTAATTTAATGTTGTTA
1 TATGATTTTAATGTAATGTTGTTA
73184406 GTGTTATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (25 bp):
TATGATTTTAATGTAATGTTGTTAT
Found at i:73186607 original size:16 final size:16
Alignment explanation
Indices: 73186586--73186630 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
73186576 ATTTAAAACT
73186586 TATATTTAGATATAAA
1 TATATTTAGATATAAA
*
73186602 TATATTT--ATATGAA
1 TATATTTAGATATAAA
73186616 TATATCTTAGATATA
1 TATAT-TTAGATATA
73186631 TTTGCATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 11 0.46
15 2 0.08
16 7 0.29
17 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (16 bp):
TATATTTAGATATAAA
Found at i:73186746 original size:63 final size:63
Alignment explanation
Indices: 73186674--73186798 Score: 180
Period size: 63 Copynumber: 2.0 Consensus size: 63
73186664 ACCAAAATAA
* * * *
73186674 TATATAATTTATGAAGAAGCTAAAAATTAGATTATAAATAT-ATATGTGTAAAATATTTAAATG
1 TATATAATTTATCAAGAAACTAAAAATTAGAGTATAAATATCATAT-TGAAAAATATTTAAATG
*
73186737 TATATAATTTATCAATAAACTAAAAATTAGAGTATAAATATGCATATTGAAAAATATTTAAA
1 TATATAATTTATCAAGAAACTAAAAATTAGAGTATAAATAT-CATATTGAAAAATATTTAAA
73186799 AACAATGATA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
63 37 0.67
64 14 0.25
65 4 0.07
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (63 bp):
TATATAATTTATCAAGAAACTAAAAATTAGAGTATAAATATCATATTGAAAAATATTTAAATG
Found at i:73190384 original size:17 final size:19
Alignment explanation
Indices: 73190362--73190398 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
73190352 CAGAAAGAAA
73190362 GAAAAAAGAA-AA-AAAAG
1 GAAAAAAGAAGAAGAAAAG
73190379 GAAAAAAGAAGAAGAAAAG
1 GAAAAAAGAAGAAGAAAAG
73190398 G
1 G
73190399 GCCCAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.56
18 2 0.11
19 6 0.33
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
GAAAAAAGAAGAAGAAAAG
Found at i:73193285 original size:93 final size:93
Alignment explanation
Indices: 73193121--73193304 Score: 287
Period size: 93 Copynumber: 2.0 Consensus size: 93
73193111 GATTAGGGAT
*** *
73193121 ATGTCAAATTGAGTAATTGGGGTGAGGTGCTTGAGTTGCCATCTAATTTCGCATAAAAATATTTG
1 ATGTCAAATTGAGTAACCAGGGTGAGGTGCTTGAGTTGCCATCTAATTTCGCATAAAAAGATTTG
*
73193186 ACTATGTTTCAAATTTGTTGAAAAAACC
66 ACTATGTCTCAAATTTGTTGAAAAAACC
* * * *
73193214 ATGTGAAATTGAGTAACCAGGGTGAGGTGCTTGGGTTGTCATCTTATTTCGCATAAAAAGATTTG
1 ATGTCAAATTGAGTAACCAGGGTGAGGTGCTTGAGTTGCCATCTAATTTCGCATAAAAAGATTTG
73193279 ACTATGTCTCAAATTTGTTGAAAAAA
66 ACTATGTCTCAAATTTGTTGAAAAAA
73193305 AAATATATGG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 82 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (93 bp):
ATGTCAAATTGAGTAACCAGGGTGAGGTGCTTGAGTTGCCATCTAATTTCGCATAAAAAGATTTG
ACTATGTCTCAAATTTGTTGAAAAAACC
Found at i:73200036 original size:20 final size:21
Alignment explanation
Indices: 73200011--73200050 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
73200001 TCTTAGAAAT
73200011 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
73200031 AGGGCAACATGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
73200051 CCATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:73209394 original size:21 final size:21
Alignment explanation
Indices: 73209364--73209419 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
73209354 ATCCTTGACA
*
73209364 TCGCGACACCATTGAAGGATG
1 TCGCGACACCATTGAAAGATG
* * * *
73209385 TTGTGACACCACTAAAAGATG
1 TCGCGACACCATTGAAAGATG
73209406 TCGCGACACCATTG
1 TCGCGACACCATTG
73209420 CGTAAACTCT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCGACACCATTGAAAGATG
Found at i:73209765 original size:33 final size:33
Alignment explanation
Indices: 73209723--73209789 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
73209713 GGAGAGTGAC
*
73209723 ATAGACAACTACTTGTAATAGCTACAACCTTAT
1 ATAGACAACTACTTGCAATAGCTACAACCTTAT
73209756 ATAGACAACTACTTGCAATAGCTACAACCTTAT
1 ATAGACAACTACTTGCAATAGCTACAACCTTAT
73209789 A
1 A
73209790 CTCTAATCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (33 bp):
ATAGACAACTACTTGCAATAGCTACAACCTTAT
Found at i:73213105 original size:48 final size:48
Alignment explanation
Indices: 73213034--73213262 Score: 377
Period size: 48 Copynumber: 4.8 Consensus size: 48
73213024 CATTAGGGTT
* *
73213034 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATTG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* *
73213082 ATATGTGATTCCATGTAAGACCATGTCTGGGACATGCCATTGGCATCG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* *
73213130 ATATGTGATCCCGTGTAAGACCATGTTTGGGACATGGCATTGGCATCG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
73213178 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
** *
73213226 ATATGTGATTTCGTGTAAGACCATGTCTGGGACATGG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGG
73213263 ACTCGATATG
Statistics
Matches: 168, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 168 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
Found at i:73222785 original size:40 final size:40
Alignment explanation
Indices: 73222726--73222897 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
73222716 TATTCGAATG
* *
73222726 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGACT
* *
73222766 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
73222806 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
73222846 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
73222886 ATATCC-GGCTAA
1 ATATCCGGGCTAA
73222898 ATTCCAAAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 6 0.05
40 109 0.95
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:73226590 original size:20 final size:19
Alignment explanation
Indices: 73226536--73226644 Score: 67
Period size: 20 Copynumber: 5.5 Consensus size: 19
73226526 CGTATAAACT
*
73226536 GTAATTCATTCA-TATAATTA
1 GTAATTCATT-AGTATAA-CA
* **
73226556 GTAGTTCATCCGTATAACCA
1 GTAATTCATTAGTATAA-CA
*
73226576 GTAATTCATTAGTATATCA
1 GTAATTCATTAGTATAACA
* ** *
73226595 GTAATTTATCCGTATCAATA
1 GTAATTCATTAGTAT-AACA
* *
73226615 GTAATTCATTCATTTTAACA
1 GTAATTCATT-AGTATAACA
73226635 GTAATTCATT
1 GTAATTCATT
73226645 CATTTCAACA
Statistics
Matches: 66, Mismatches: 20, Indels: 6
0.72 0.22 0.07
Matches are distributed among these distances:
19 14 0.21
20 50 0.76
21 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (19 bp):
GTAATTCATTAGTATAACA
Found at i:73226609 original size:19 final size:20
Alignment explanation
Indices: 73226526--73226623 Score: 65
Period size: 20 Copynumber: 5.0 Consensus size: 20
73226516 CATTTTTATT
* * *
73226526 CGTATAAACTGTAATTCATT
1 CGTATAACCAGTAATTCATC
* ** *
73226546 CATATAATTAGTAGTTCATC
1 CGTATAACCAGTAATTCATC
*
73226566 CGTATAACCAGTAATTCATT
1 CGTATAACCAGTAATTCATC
* * *
73226586 AGTAT-ATCAGTAATTTATC
1 CGTATAACCAGTAATTCATC
*
73226605 CGTATCAA-TAGTAATTCAT
1 CGTAT-AACCAGTAATTCAT
73226624 TCATTTTAAC
Statistics
Matches: 58, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
19 15 0.26
20 42 0.72
21 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (20 bp):
CGTATAACCAGTAATTCATC
Found at i:73226618 original size:39 final size:40
Alignment explanation
Indices: 73226526--73226643 Score: 118
Period size: 40 Copynumber: 3.0 Consensus size: 40
73226516 CATTTTTATT
* * * *
73226526 CGTATAAACTGTAATTCATTCATATAATTAGTAGTTCATC
1 CGTATAACCAGTAATTCATTCATATAATCAGTAATTCATC
*
73226566 CGTATAACCAGTAATTCATT-AGTAT-ATCAGTAATTTATC
1 CGTATAACCAGTAATTCATTCA-TATAATCAGTAATTCATC
* *
73226605 CGTATCAA-TAGTAATTCATTCATTTTAA-CAGTAATTCAT
1 CGTAT-AACCAGTAATTCATTCA-TATAATCAGTAATTCAT
73226644 TCATTTCAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
39 28 0.43
40 36 0.55
41 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (40 bp):
CGTATAACCAGTAATTCATTCATATAATCAGTAATTCATC
Found at i:73226645 original size:20 final size:20
Alignment explanation
Indices: 73226609--73226654 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
73226599 TTTATCCGTA
*
73226609 TCAATAGTAATTCATTCATT
1 TCAACAGTAATTCATTCATT
*
73226629 TTAACAGTAATTCATTCATT
1 TCAACAGTAATTCATTCATT
73226649 TCAACA
1 TCAACA
73226655 TAGCTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.41
Consensus pattern (20 bp):
TCAACAGTAATTCATTCATT
Found at i:73226878 original size:22 final size:23
Alignment explanation
Indices: 73226812--73226976 Score: 107
Period size: 23 Copynumber: 7.0 Consensus size: 23
73226802 AAGCTCCTCC
* *
73226812 TGAGCTGATAAACAATAAGCACTAT
1 TGAGCTG--AAACAATAAGCTCTTT
73226837 TGAGCTGAAACAATAAGCTCTTT
1 TGAGCTGAAACAATAAGCTCTTT
* * * *
73226860 TGAGCTG-AACAGTAGGCTCATA
1 TGAGCTGAAACAATAAGCTCTTT
* * * **
73226882 CGAGTTGAAACGATAAGCTCTAA
1 TGAGCTGAAACAATAAGCTCTTT
* *
73226905 TGAGTTGAAACAGTAAGCTCTTT
1 TGAGCTGAAACAATAAGCTCTTT
* * * **
73226928 CGAGATGATATATCAGTAAGCTCTAA
1 TGAGCTGA-A-A-CAATAAGCTCTTT
*
73226954 TGAGCTGAAACAGTAAGCTCTTT
1 TGAGCTGAAACAATAAGCTCTTT
73226977 CAAGTTGATA
Statistics
Matches: 110, Mismatches: 26, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
22 16 0.15
23 66 0.60
24 2 0.02
25 9 0.08
26 17 0.15
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (23 bp):
TGAGCTGAAACAATAAGCTCTTT
Found at i:73226948 original size:26 final size:26
Alignment explanation
Indices: 73226915--73226999 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 26
73226905 TGAGTTGAAA
73226915 CAGTAAGCTCTTTCGAGATGATATAT
1 CAGTAAGCTCTTTCGAGATGATATAT
* *
73226941 CAGTAAGCTCTAAT-GAGCTGA-A-A-
1 CAGTAAGCTCT-TTCGAGATGATATAT
* *
73226964 CAGTAAGCTCTTTCAAGTTGATATAT
1 CAGTAAGCTCTTTCGAGATGATATAT
*
73226990 CGGTAAGCTC
1 CAGTAAGCTC
73227000 CAATGAGCTG
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
22 1 0.02
23 16 0.33
24 2 0.04
25 2 0.04
26 26 0.54
27 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31
Consensus pattern (26 bp):
CAGTAAGCTCTTTCGAGATGATATAT
Found at i:73226950 original size:49 final size:49
Alignment explanation
Indices: 73226895--73227022 Score: 202
Period size: 49 Copynumber: 2.6 Consensus size: 49
73226885 GTTGAAACGA
* *
73226895 TAAGCTCTAATGAGTTGAAACAGTAAGCTCTTTCGAGATGATATATCAG
1 TAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTCAAGATGATATATCAG
* *
73226944 TAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTCAAGTTGATATATCGG
1 TAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTCAAGATGATATATCAG
* *
73226993 TAAGCTCCAATGAGCTGAAATAGTAAGCTC
1 TAAGCTCTAATGAGCTGAAACAGTAAGCTC
73227023 GTACAAGCTA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (49 bp):
TAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTCAAGATGATATATCAG
Found at i:73233265 original size:6 final size:6
Alignment explanation
Indices: 73233254--73233314 Score: 63
Period size: 6 Copynumber: 10.2 Consensus size: 6
73233244 AACAAAATAG
* *
73233254 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT A-AATAT TTATAT ATATAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAA-AT ATAAAT ATA-AAT
*
73233303 -GAAAT ATAAAT A
1 ATAAAT ATAAAT A
73233315 GATCAATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
5 5 0.11
6 37 0.82
7 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (6 bp):
ATAAAT
Found at i:73233327 original size:30 final size:30
Alignment explanation
Indices: 73233274--73233332 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
73233264 ATATAAATAT
*
73233274 AAATATAAATAAATATTTATATATATAATG
1 AAATATAAATAAATAATTATATATATAATG
* *
73233304 AAATATAAATAGATCAATT-TATATTTAAT
1 AAATATAAATAAAT-AATTATATATATAAT
73233333 TTGCGAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (30 bp):
AAATATAAATAAATAATTATATATATAATG
Found at i:73234273 original size:12 final size:11
Alignment explanation
Indices: 73234238--73234273 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
73234228 CAGTACATAT
73234238 GTGATTAGAGG
1 GTGATTAGAGG
73234249 GTGATTAGAGG
1 GTGATTAGAGG
73234260 GTGATTAGGAGG
1 GTGATTA-GAGG
73234272 GT
1 GT
73234274 TCAAGAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 18 0.75
12 6 0.25
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.28
Consensus pattern (11 bp):
GTGATTAGAGG
Found at i:73237141 original size:40 final size:40
Alignment explanation
Indices: 73237097--73237364 Score: 283
Period size: 40 Copynumber: 6.7 Consensus size: 40
73237087 TTAGTGCTTA
73237097 TGATTGTACTTCGGTACCCCTGAATGCACATACGTGCCCC
1 TGATTGTACTTCGGTACCCCTGAATGCACATACGTGCCCC
* * **
73237137 TGATTGTAGTTCGATACCTTTGAATGCACATACGTG-CCC
1 TGATTGTACTTCGGTACCCCTGAATGCACATACGTGCCCC
* * *
73237176 TTATTTGTACTGCGGTACCCCTAAATGCACATA-GATGCCCC
1 TGA-TTGTACTTCGGTACCCCTGAATGCACATACG-TGCCCC
* * *
73237217 TGATTGTACTTCAGTATCCCTAAATGCACATACGTG-CCC
1 TGATTGTACTTCGGTACCCCTGAATGCACATACGTGCCCC
* * * **
73237256 TTATTTGTACTTTGGTACCTCTGAATGCACATACGTGCCTG
1 TGA-TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCC
* * * *
73237297 TGATTGT-CTTTGGTACCCTTGAATACATATACGTGCCCC
1 TGATTGTACTTCGGTACCCCTGAATGCACATACGTGCCCC
* *
73237336 TGCTTGTACTTCGGTACTCCCTAAATGCA
1 TGATTGTACTTCGGTAC-CCCTGAATGCA
73237365 GTATAATGTC
Statistics
Matches: 185, Mismatches: 35, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
39 43 0.23
40 125 0.68
41 17 0.09
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (40 bp):
TGATTGTACTTCGGTACCCCTGAATGCACATACGTGCCCC
Found at i:73237282 original size:120 final size:119
Alignment explanation
Indices: 73237097--73237364 Score: 319
Period size: 120 Copynumber: 2.2 Consensus size: 119
73237087 TTAGTGCTTA
* * * *
73237097 TGATTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGATTGTAGTTCGATACCTTTGAAT
1 TGATTGTACTTCGGTATCCCTAAATGCACATACGTGCCCCTGATTGTACTTCGATACCTCTGAAT
*
73237162 GCACATACGTGCCCT-T-ATTTGTACTGCGGTACCCCTAAATGCACATA-GATGCCCC
66 GCACATACGTG-CCTGTGA-TTGT-CTGCGGTACCCCTAAATACACATACG-TGCCCC
* * * *
73237217 TGATTGTACTTCAGTATCCCTAAATGCACATACGTG-CCCTTATTTGTACTTTGGTACCTCTGAA
1 TGATTGTACTTCGGTATCCCTAAATGCACATACGTGCCCCTGA-TTGTACTTCGATACCTCTGAA
** * * *
73237281 TGCACATACGTGCCTGTGATTGTCTTTGGTACCCTTGAATACATATACGTGCCCC
65 TGCACATACGTGCCTGTGATTGTCTGCGGTACCCCTAAATACACATACGTGCCCC
*
73237336 TGCTTGTACTTCGGTACTCCCTAAATGCA
1 TGATTGTACTTCGGTA-TCCCTAAATGCA
73237365 GTATAATGTC
Statistics
Matches: 127, Mismatches: 16, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
119 46 0.36
120 80 0.63
121 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (119 bp):
TGATTGTACTTCGGTATCCCTAAATGCACATACGTGCCCCTGATTGTACTTCGATACCTCTGAAT
GCACATACGTGCCTGTGATTGTCTGCGGTACCCCTAAATACACATACGTGCCCC
Found at i:73261462 original size:13 final size:13
Alignment explanation
Indices: 73261444--73261468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73261434 TACTAAATTT
73261444 TCATGGATTCAAA
1 TCATGGATTCAAA
73261457 TCATGGATTCAA
1 TCATGGATTCAA
73261469 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:73265662 original size:28 final size:28
Alignment explanation
Indices: 73265583--73265665 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 28
73265573 GCATGAATAT
*
73265583 AAATGTGATTTGGGCCT-GATGGGCCATAT
1 AAATGTGA-TTGGGCCTAG-TGGGCCATAC
** *
73265612 AAATGCAAATTGGGCCTAATGGGCCATAC
1 AAATG-TGATTGGGCCTAGTGGGCCATAC
73265641 AAATGTGATTGGGCCTAGTGGGCCA
1 AAATGTGATTGGGCCTAGTGGGCCA
73265666 GATACAGGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
28 17 0.38
29 27 0.60
30 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (28 bp):
AAATGTGATTGGGCCTAGTGGGCCATAC
Found at i:73266057 original size:11 final size:11
Alignment explanation
Indices: 73266041--73266065 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73266031 TATGTATATC
73266041 TACTGCATACA
1 TACTGCATACA
73266052 TACTGCATACA
1 TACTGCATACA
73266063 TAC
1 TAC
73266066 GATATTCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (11 bp):
TACTGCATACA
Found at i:73267595 original size:43 final size:42
Alignment explanation
Indices: 73267525--73267642 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
73267515 AAGCTCATAC
* *
73267525 ATGCCAAC-GTCCCAGACGTGGTATTACATGTAATCAAATATTG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGTAATCAAATA-TG
* * *
73267568 ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAATTATG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTAATCAAATATG
* * *
73267610 ATGCCAATGTTCTAGACATGGTCTTACATGTAA
1 ATGCCACTGTCCCAGACATGGTCTTACATGTAA
73267643 ATCATAAGTC
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 32 0.50
43 32 0.50
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTAATCAAATATG
Found at i:73267645 original size:43 final size:44
Alignment explanation
Indices: 73267525--73267681 Score: 151
Period size: 43 Copynumber: 3.6 Consensus size: 44
73267515 AAGCTCATAC
* * *
73267525 ATGCCAACGTCCCAGACGTGGTATTACATGT-AATCAAATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATTG
* * *
73267568 ATGCCACTGTCCCAGACATGGTCTTACACG-AAATCAATTA-TG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATTG
* * * **
73267610 ATGCCAATGTTCTAGACATGGTCTTACATGTAAATCATAA-GTCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA-AATATTG
* * *
73267654 ATGCCAACGTCGCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
73267682 CGAAAACACA
Statistics
Matches: 91, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 28 0.31
43 39 0.43
44 24 0.26
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATTG
Found at i:73275181 original size:68 final size:67
Alignment explanation
Indices: 73275104--73275253 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73275094 CATCATGTGT
* * * *
73275104 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73275166 ATGTAG
62 ATGTAG
** * *
73275172 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73275237 AG
66 AG
73275239 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73275254 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73275209 original size:64 final size:64
Alignment explanation
Indices: 73275128--73275311 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
73275118 AGACATTATG
* *
73275128 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73275192 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73275257 AA
63 AA
* * * *
73275259 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73275312 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73285780 original size:40 final size:40
Alignment explanation
Indices: 73285725--73285971 Score: 253
Period size: 40 Copynumber: 6.2 Consensus size: 40
73285715 CGGATGATAA
* *
73285725 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATAT
* *
73285765 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
*
73285805 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
*
73285845 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
* * *
73285883 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* *
73285924 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATAT
73285964 CC-GGCTAA
1 CCGGGCTAA
73285972 ACTCCGAAGG
Statistics
Matches: 178, Mismatches: 16, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 39 0.22
40 128 0.72
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
Found at i:73285937 original size:119 final size:120
Alignment explanation
Indices: 73285725--73285948 Score: 326
Period size: 119 Copynumber: 1.9 Consensus size: 120
73285715 CGGATGATAA
* * *
73285725 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* * *
73285790 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
66 TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
* * * *
73285845 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
*
73285908 GTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
65 GTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
73285949 AGCTAGTGGC
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 64 0.70
120 28 0.30
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
Found at i:73285981 original size:79 final size:79
Alignment explanation
Indices: 73285765--73285971 Score: 283
Period size: 79 Copynumber: 2.6 Consensus size: 79
73285755 GTGGCTAATT
* *
73285765 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
73285830 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
*
73285845 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
73285909 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * *
73285924 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
73285972 ACTCCGAAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 74 0.65
80 38 0.34
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:73292611 original size:40 final size:40
Alignment explanation
Indices: 73292551--73292795 Score: 240
Period size: 40 Copynumber: 6.2 Consensus size: 40
73292541 GATGATAACT
* * *
73292551 GGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-TCT
1 GGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATATCC
* *
73292591 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATCC
*
73292631 GGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATATCC
*
73292671 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTATACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT-CC
* * *
73292710 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATCC
* *
73292750 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATATCC
73292790 -GGCTAA
1 GGGCTAA
73292796 ACTCCGAAGG
Statistics
Matches: 175, Mismatches: 17, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 39 0.22
40 125 0.71
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATATCC
Found at i:73292752 original size:79 final size:80
Alignment explanation
Indices: 73292591--73292772 Score: 285
Period size: 79 Copynumber: 2.3 Consensus size: 80
73292581 GGCTAATTCT
* *
73292591 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * *
73292656 CGAGCTATTATATCC
66 CAAGCTACTATAACC
* *
73292671 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
73292735 CAAGTTACTATAACC
66 CAAGCTACTATAACC
73292750 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
73292773 AGCTAGTGGC
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 60 0.64
80 34 0.36
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAACC
Found at i:73292805 original size:79 final size:79
Alignment explanation
Indices: 73292591--73292795 Score: 279
Period size: 79 Copynumber: 2.6 Consensus size: 79
73292581 GGCTAATTCT
* *
73292591 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * *
73292656 CGAGCTATTATATCC
65 CAAGCTACTATAACC
*
73292671 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
73292735 CAAGTTACTATAACC
65 CAAGCTACTATAACC
* * *
73292750 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
73292796 ACTCCGAAGG
Statistics
Matches: 111, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 74 0.67
80 36 0.32
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAACC
Found at i:73295900 original size:55 final size:54
Alignment explanation
Indices: 73295841--73295967 Score: 130
Period size: 55 Copynumber: 2.3 Consensus size: 54
73295831 GTGCAATCCC
* * * * *
73295841 CACGCCCGTGTTATTTTAACA-TGTTCGACCATGGGTGTTAGACACGGGCGTGTCG
1 CACGCCCGTGTTATTTT-ACAGT-TTCAACCACGGGTCTTACACAAGGGCGTGTCG
* * * *
73295896 CACGCCCTTGCTAGTTTTTCAGTTTCAACCACGGGTCTTCCACAAGGGCGTGTCG
1 CACGCCCGTGTTA-TTTTACAGTTTCAACCACGGGTCTTACACAAGGGCGTGTCG
*
73295951 CACGCCCGTGTTGTTTT
1 CACGCCCGTGTTATTTT
73295968 GGTAGGCTCG
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
54 4 0.07
55 49 0.84
56 5 0.09
ACGTcount: A:0.16, C:0.28, G:0.26, T:0.31
Consensus pattern (54 bp):
CACGCCCGTGTTATTTTACAGTTTCAACCACGGGTCTTACACAAGGGCGTGTCG
Found at i:73298926 original size:5 final size:5
Alignment explanation
Indices: 73298916--73298962 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
73298906 AGAGAAAGAA
*
73298916 AAATT AAATT -AATT AGTAATA ATAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT A--AATT A-AATT AAATT AAATT AAATT AAATT
73298963 GTAAGGAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
4 4 0.11
5 24 0.65
6 5 0.14
7 4 0.11
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:73313396 original size:26 final size:26
Alignment explanation
Indices: 73313367--73313419 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
73313357 AAATTACACT
73313367 TATTATATACATATTTCATTAATAGA
1 TATTATATACATATTTCATTAATAGA
73313393 TATTATATACATATTTCATTAATAGA
1 TATTATATACATATTTCATTAATAGA
73313419 T
1 T
73313420 CCGAAAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.47
Consensus pattern (26 bp):
TATTATATACATATTTCATTAATAGA
Found at i:73328728 original size:17 final size:17
Alignment explanation
Indices: 73328706--73328742 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
73328696 GATAAGTACA
73328706 CATTGTCATTGA-ATTTT
1 CATTGTCATT-ATATTTT
73328723 CATTGTCATTATATTTT
1 CATTGTCATTATATTTT
73328740 CAT
1 CAT
73328743 GATTAGTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.24, C:0.14, G:0.08, T:0.54
Consensus pattern (17 bp):
CATTGTCATTATATTTT
Found at i:73334022 original size:13 final size:13
Alignment explanation
Indices: 73334004--73334029 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73333994 GAGCAATTGT
73334004 ACACGGGCGTGTC
1 ACACGGGCGTGTC
73334017 ACACGGGCGTGTC
1 ACACGGGCGTGTC
73334030 CCTTCAAGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:73345748 original size:48 final size:45
Alignment explanation
Indices: 73345677--73345940 Score: 161
Period size: 46 Copynumber: 5.7 Consensus size: 45
73345667 GGTATAATGT
* *
73345677 CGATGCCATGTCTCTGACATGGTCTTACACTGACACCTCTATATGTGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACT-ACACCTCTATA-GTGC
* * *
73345725 CGATGCCATGTCCTAGACATGGTCTTACACTAACACATCTCGTAGT--
1 CGATGCCATGTCCCAGACAT-GTCTTACACT-ACACCTCT-ATAGTGC
* ** *
73345771 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTCCATCTCGAG-GT
1 CGATGCCATGTCCCAGACATGTCTTACACTA-C-ACC-TCTATAGTGC
* * *
73345817 CGAT-TCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCA-A-TGC
1 CGATGCCATGTCCCAGACATGTCTTACACTA-CAC-C-TCT-ATAGTGC
**
73345863 CGATGCCATGTCCCAGACATGGTCTTACACT--GGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTACACCTCT-AT-A-GT-GC
*
73345911 CAATG-CATGTCCCAGACATGTCTTACACTA
1 CGATGCCATGTCCCAGACATGTCTTACACTA
73345941 GCACACAAAT
Statistics
Matches: 178, Mismatches: 20, Indels: 37
0.76 0.09 0.16
Matches are distributed among these distances:
43 6 0.03
44 12 0.07
45 19 0.11
46 58 0.33
47 28 0.16
48 53 0.30
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
CGATGCCATGTCCCAGACATGTCTTACACTACACCTCTATAGTGC
Found at i:73345812 original size:46 final size:47
Alignment explanation
Indices: 73345723--73345942 Score: 213
Period size: 46 Copynumber: 4.7 Consensus size: 47
73345713 CTCTATATGT
* * *
73345723 GCCGATGCCATGTCCTAGACATGGTCTTACACTA--ACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCGTAG
*
73345769 GTCGATGCATGTCCCAGACATGTCTTACACTAGCT-TCCATCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGTAG
* * * * * *
73345815 GTCGATTCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTAG
* *
73345861 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGTAG
*
73345909 GCCAATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
73345943 ACACAAATAA
Statistics
Matches: 146, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 69 0.47
47 28 0.19
48 23 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTAG
Found at i:73345920 original size:94 final size:94
Alignment explanation
Indices: 73345671--73345945 Score: 282
Period size: 94 Copynumber: 2.9 Consensus size: 94
73345661 ACATAGGGTA
* * * *
73345671 TAATGTCGATGCCATGTCTCTGACATGGTCTTACACTGACACCTC-TATATGT-GCCGATGCCAT
1 TAATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATA-ATGTGGCCGATG-CAT
*
73345734 GTCCTAGACATGGTCTTACACTAACACATCTCG
63 GTCCTAGACAT-GTCTTACACTAGCACATCTCG
* * * * *
73345767 T-A-GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCCAT-CTCGAGGTCGATTCATG
1 TAATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATG
*
73345826 TCCTAGACATGTCTTACACTAGCTC-TCGTC-
64 TCCTAGACATGTCTTACACTAGCACATC-TCG
* *
73345856 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGT
1 T-AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGT
*
73345921 CCCAGACATGTCTTACACTAGCACA
65 CCTAGACATGTCTTACACTAGCACA
73345946 CAAATAACCC
Statistics
Matches: 146, Mismatches: 20, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
89 3 0.02
90 17 0.12
91 17 0.12
92 23 0.16
93 26 0.18
94 56 0.38
95 3 0.02
96 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (94 bp):
TAATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTC
CTAGACATGTCTTACACTAGCACATCTCG
Found at i:73352775 original size:71 final size:67
Alignment explanation
Indices: 73352682--73352823 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
73352672 TCACCAGATA
* * *
73352682 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTACAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTACAGCGA
73352747 GGCTGC
62 GGCTGC
* * *
73352753 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTACAGCGAGGCT
73352818 GC
66 GC
73352820 CAGA
1 CAGA
73352824 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTACAGCGAGGCT
GC
Found at i:73352801 original size:27 final size:26
Alignment explanation
Indices: 73352753--73352804 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73352743 GCGAGGCTGC
*
73352753 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
73352779 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
73352805 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:73357972 original size:21 final size:22
Alignment explanation
Indices: 73357932--73357973 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
73357922 GCCTAAATGG
* *
73357932 TCACATGGGCGTGTTGCCCCTC
1 TCACAAGGACGTGTTGCCCCTC
73357954 TCACAAGGACGTG-TGCCCCT
1 TCACAAGGACGTGTTGCCCCT
73357974 GTGTTAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.14, C:0.36, G:0.26, T:0.24
Consensus pattern (22 bp):
TCACAAGGACGTGTTGCCCCTC
Found at i:73358372 original size:48 final size:48
Alignment explanation
Indices: 73358266--73358526 Score: 199
Period size: 48 Copynumber: 5.5 Consensus size: 48
73358256 ATACCAATGT
* * *
73358266 CATGT-CCAGACATGGTCTTACACT-AGCTC-TCACATATCTGTGCCAATGC
1 CATGTCCCAGACATGGTCTTACACTGA-CACATC-TATA-C-GTGCCGATGC
*
73358315 CATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGACACATCTATACGTGCCGATGC
*
73358363 CATGTCCCAGACATGGTCTTGCACTGACACATC--T-CGTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGACACATCTATACGT-GCCGATGC
* * ** *
73358408 CATGTCCCAAACAT-GTCTTACACTGGCTTACATCTCGA-G-GTCGATG-
1 CATGTCCCAGACATGGTCTTACACTGAC--ACATCTATACGTGCCGATGC
* * * * * *
73358454 CATGTCCTAGACAT-GTCTTACACT-AGCTCTTGTCT-CAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGA-CACATCTATAC-GTGCCGATGC
73358501 CATGTCCCAGACATGGTCTTACACTG
1 CATGTCCCAGACATGGTCTTACACTG
73358527 GCTCTCATAA
Statistics
Matches: 176, Mismatches: 20, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
44 15 0.09
45 16 0.09
46 48 0.27
47 13 0.07
48 51 0.29
49 6 0.03
50 24 0.14
51 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGACACATCTATACGTGCCGATGC
Found at i:73358441 original size:46 final size:47
Alignment explanation
Indices: 73358266--73358571 Score: 199
Period size: 46 Copynumber: 6.5 Consensus size: 47
73358256 ATACCAATGT
* * *
73358266 CATGT-CCAGACATGGTCTTACACTAGCTCTCACATATC-T-GTGCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCT--CATCTCGTAG-GCCGATG
* * *
73358314 CCATGTCCCAGACATGGTCTTACACTGACAC-C-TCT-ATACGTGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGTA-G-GCCGATG
* * *
73358362 CCATGTCCCAGACATGGTCTTGCACT-G-ACACATCTCGTA-GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGTAGGCCGATG
* *
73358408 CATGTCCCAAACATGTCTTACACTGGCT-TACATCTCG-AGGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGTAGGCCGATG
* * ** * *
73358454 CATGTCCTAGACATGTCTTACACTAGCTCTTGTCTC-AATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTAGGCCGATG
* *
73358500 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-GGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGTAGGCCGATG
* *
73358548 CATGTCTCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
73358572 AGCACACAAA
Statistics
Matches: 210, Mismatches: 30, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
44 9 0.04
45 15 0.07
46 71 0.34
47 28 0.13
48 58 0.28
49 8 0.04
50 21 0.10
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTAGGCCGATG
Found at i:73358531 original size:48 final size:48
Alignment explanation
Indices: 73358266--73358534 Score: 238
Period size: 46 Copynumber: 5.7 Consensus size: 48
73358256 ATACCAATGT
* * * *
73358266 CATGT-CCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCAATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCT--CATCTCAGTGCCGATGC
* * *
73358315 CATGTCCCAGACATGGTCTTACACTGACAC-C-TCTATACGTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-CA-GTGCCGATGC
* * *
73358363 CATGTCCCAGACATGGTCTTGCACT-G-ACACATCTC-GTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAGT-GCCGATGC
* *
73358408 CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGAG-GTCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTC-AGTGCCGATGC
* * ** *
73358454 CATGTCCTAGACAT-GTCTTACACTAGCTCTTGTCTCAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAGTGCCGATGC
73358501 CATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCAT
73358535 AATGTGGCTG
Statistics
Matches: 179, Mismatches: 26, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
44 9 0.05
45 17 0.09
46 58 0.32
47 16 0.09
48 53 0.30
49 5 0.03
50 21 0.12
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAGTGCCGATGC
Found at i:73358548 original size:94 final size:93
Alignment explanation
Indices: 73358266--73358574 Score: 257
Period size: 94 Copynumber: 3.3 Consensus size: 93
73358256 ATACCAATGT
* *
73358266 CATGTCC-AGACATGGTCTTACACTAGCTCTCACATATCTGTGCCAATGCCATGTCCCAGACATG
1 CATGTCCTAGACATGGTCTTACACTAGCTCT---ATCTC-GTGCCGATGCCATGTCCCAGACATG
* * * *
73358330 GTCTTACACTGACACCTC-TATACGT-GCCGATG
62 GTCTTACACTGGC-TCTCATA-ATGTGGCTGATG
* * * *
73358362 CCATGTCCCAGACATGGTCTTGCACT-GACAC-ATCTCGTAGCCGATG-CATGTCCCAAACAT-G
1 -CATGTCCTAGACATGGTCTTACACTAG-CTCTATCTCGT-GCCGATGCCATGTCCCAGACATGG
* *
73358423 TCTTACACTGGCT-TACAT-CTCGAGG-TCGATG
63 TCTTACACTGGCTCT-CATAAT-GTGGCT-GATG
* *
73358454 CATGTCCTAGACAT-GTCTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCTAGACATGGTCTTACACTAGCTC-TATCTC-GTGCCGATGCCATGTCCCAGACATGGT
73358518 CTTACACTGGCTCTCATAATGTGGCTGATG
64 CTTACACTGGCTCTCATAATGTGGCTGATG
*
73358548 CATGT-CTCAAACAT-GTCTTACACTAGC
1 CATGTCCT-AGACATGGTCTTACACTAGC
73358575 ACACAAATAA
Statistics
Matches: 174, Mismatches: 20, Indels: 39
0.75 0.09 0.17
Matches are distributed among these distances:
90 12 0.07
91 16 0.09
92 29 0.17
93 31 0.18
94 57 0.33
95 3 0.02
97 8 0.05
98 18 0.10
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
CATGTCCTAGACATGGTCTTACACTAGCTCTATCTCGTGCCGATGCCATGTCCCAGACATGGTCT
TACACTGGCTCTCATAATGTGGCTGATG
Found at i:73366282 original size:28 final size:29
Alignment explanation
Indices: 73366251--73366310 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
73366241 AATTTTTAAC
*
73366251 AAAAATGTCAATT-AGGAATTAAATTGAG
1 AAAAATGTAAATTGAGGAATTAAATTGAG
* ** *
73366279 AAAAGTGTAAATTGAGGGGTTAAATTGTG
1 AAAAATGTAAATTGAGGAATTAAATTGAG
73366308 AAA
1 AAA
73366311 TAAATGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.47, C:0.02, G:0.23, T:0.28
Consensus pattern (29 bp):
AAAAATGTAAATTGAGGAATTAAATTGAG
Found at i:73368982 original size:37 final size:37
Alignment explanation
Indices: 73368941--73369014 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
73368931 CTACTTAGAG
* *
73368941 ATAATGTATATCATTGGTGGAAAACGTTGACATCGGT
1 ATAATGCATATCATTGGTGGAAAACATTGACATCGGT
73368978 ATAATGCATATCATTGGTGGAAAACATTGACATCGGT
1 ATAATGCATATCATTGGTGGAAAACATTGACATCGGT
73369015 GGTTCCTAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (37 bp):
ATAATGCATATCATTGGTGGAAAACATTGACATCGGT
Found at i:73389233 original size:40 final size:40
Alignment explanation
Indices: 73389182--73389368 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
73389172 GCTACTTGCT
*
73389182 CAAATGCCTTCGGGACTTAGCCCAGTTACAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTACAGTAACTCGCA
73389222 CAAATGCCTTCGGGACTTAGCCCGGTTACAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTACAGTAACTCGCA
* * *
73389262 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTACAGTAACTCGCA
* *
73389302 CAAATGCCTTCGGG-CTTAGCCCGGAATT--AGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTACAGTAACTCGCA
73389341 CAAATGCCTTCGGGACTTAGCCCGGTTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA
73389369 TCATCCGAAT
Statistics
Matches: 135, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 100 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTACAGTAACTCGCA
Found at i:73406499 original size:14 final size:14
Alignment explanation
Indices: 73406480--73406507 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73406470 TTTATGTTGA
73406480 TGACATGTTGATAG
1 TGACATGTTGATAG
73406494 TGACATGTTGATAG
1 TGACATGTTGATAG
73406508 CAACAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (14 bp):
TGACATGTTGATAG
Found at i:73408805 original size:76 final size:76
Alignment explanation
Indices: 73408679--73408833 Score: 283
Period size: 76 Copynumber: 2.0 Consensus size: 76
73408669 TAGATCTCCT
73408679 TAAATATGGTAACTTGAGCACACATAAATTCTTCAAATAAAATCATTGAATGATACTCAACAATA
1 TAAATATGGTAACTTGAGCACACATAAATTCTTCAAATAAAATCATTGAATGATACTCAACAATA
73408744 TCATATCCATA
66 TCATATCCATA
* * *
73408755 TAAATATGGTAACTTGATCACACATAAGTTCTTCAAATAAAATCATTGAATGATATTCAACAATA
1 TAAATATGGTAACTTGAGCACACATAAATTCTTCAAATAAAATCATTGAATGATACTCAACAATA
73408820 TCATATCCATA
66 TCATATCCATA
73408831 TAA
1 TAA
73408834 TTGTTCCTCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (76 bp):
TAAATATGGTAACTTGAGCACACATAAATTCTTCAAATAAAATCATTGAATGATACTCAACAATA
TCATATCCATA
Found at i:73412036 original size:17 final size:18
Alignment explanation
Indices: 73412010--73412057 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
73412000 TTAACATAGG
*
73412010 AAAGAAAAAGGCAAAAAA
1 AAAGAAAAAGGAAAAAAA
73412028 AAA-AAAAA-GAAAAAAA
1 AAAGAAAAAGGAAAAAAA
73412044 AAAGAAAAA-GAAAA
1 AAAGAAAAAGGAAAA
73412058 TGAAAGAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 10 0.36
17 15 0.54
18 3 0.11
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGGAAAAAAA
Found at i:73412040 original size:11 final size:11
Alignment explanation
Indices: 73412022--73412062 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
73412012 AGAAAAAGGC
73412022 AAAA-AAAAAA
1 AAAAGAAAAAA
73412032 AAAAGAAAAAA
1 AAAAGAAAAAA
73412043 AAAAGAAAAAGA
1 AAAAGAAAAA-A
*
73412055 AAATGAAA
1 AAAAGAAA
73412063 GAGAGAAGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
10 4 0.14
11 16 0.57
12 8 0.29
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (11 bp):
AAAAGAAAAAA
Found at i:73412062 original size:6 final size:6
Alignment explanation
Indices: 73412010--73412062 Score: 58
Period size: 6 Copynumber: 9.2 Consensus size: 6
73412000 TTAACATAGG
*
73412010 AAAGAA AAAGGCA AAA-AA AAA-AA AAAGAA AAA-AA AAAGAA AAAGAA
1 AAAGAA AAA-GAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
*
73412056 AATGAA A
1 AAAGAA A
73412063 GAGAGAAGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
5 14 0.34
6 22 0.54
7 5 0.12
ACGTcount: A:0.83, C:0.02, G:0.13, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:73422913 original size:48 final size:48
Alignment explanation
Indices: 73422861--73423058 Score: 281
Period size: 48 Copynumber: 4.1 Consensus size: 48
73422851 CTTACACAAA
* *
73422861 ATCACATATCGATGCCAATGCCATATCCCAGATATGGTATTAAATGGG
1 ATCACATATCGATGCCAATGCCATATCCCAGACATGGTATTACATGGG
*
73422909 ATCACATATTGATGCCAATGCCATATCCCAGACATGG-ACTTACATGGG
1 ATCACATATCGATGCCAATGCCATATCCCAGACATGGTA-TTACATGGG
* * *
73422957 ATCACATATCGATGCTAATGCCATGTCCCAGACATGGTCTTACATGGG
1 ATCACATATCGATGCCAATGCCATATCCCAGACATGGTATTACATGGG
* * * **
73423005 ATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATAAG
1 ATCACATATCGATGCCAATGCCATATCCCAGACATGGTATTACATGGG
73423053 ATCACA
1 ATCACA
73423059 ATGCCATAGC
Statistics
Matches: 137, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.01
48 136 0.99
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (48 bp):
ATCACATATCGATGCCAATGCCATATCCCAGACATGGTATTACATGGG
Found at i:73422961 original size:96 final size:96
Alignment explanation
Indices: 73422830--73423058 Score: 314
Period size: 96 Copynumber: 2.4 Consensus size: 96
73422820 TCTCACATCG
* * * * * *
73422830 ATGCCATGTCCCAAACATAGTCTTACACAAAATCACATATCGATGCCAATGCCATATCCCAGATA
1 ATGCCATATCCCAAACATGGACTTACATAAGATCACATATCGATGCCAATGCCATATCCCAGACA
*
73422895 TGGTATTAAATGGGATCACATATTGATGCCA
66 TGGTATTAAATGGGATCACATATCGATGCCA
* ** * *
73422926 ATGCCATATCCCAGACATGGACTTACATGGGATCACATATCGATGCTAATGCCATGTCCCAGACA
1 ATGCCATATCCCAAACATGGACTTACATAAGATCACATATCGATGCCAATGCCATATCCCAGACA
* *
73422991 TGGTCTTACATGGGATCACATATCGATGCCA
66 TGGTATTAAATGGGATCACATATCGATGCCA
* *
73423022 ATGCCATGTCCCAAACATGGTCTTACATAAGATCACA
1 ATGCCATATCCCAAACATGGACTTACATAAGATCACA
73423059 ATGCCATAGC
Statistics
Matches: 114, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 114 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (96 bp):
ATGCCATATCCCAAACATGGACTTACATAAGATCACATATCGATGCCAATGCCATATCCCAGACA
TGGTATTAAATGGGATCACATATCGATGCCA
Found at i:73423079 original size:37 final size:37
Alignment explanation
Indices: 73423038--73423122 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 37
73423028 TGTCCCAAAC
*
73423038 ATGGTCTTACATAAGATCACAATGCCATAGCCCAGCT
1 ATGGTCTTACATAACATCACAATGCCATAGCCCAGCT
** * * *
73423075 ATGGTCTTACATGTCATTACGATGCCATAGCCTAGCT
1 ATGGTCTTACATAACATCACAATGCCATAGCCCAGCT
73423112 ATGGTCTTACA
1 ATGGTCTTACA
73423123 CGTACTCACA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (37 bp):
ATGGTCTTACATAACATCACAATGCCATAGCCCAGCT
Found at i:73438571 original size:29 final size:29
Alignment explanation
Indices: 73438512--73438571 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
73438502 TTTAATTAGG
** **
73438512 GGTTAAATTGTGAAATGTATAAATTTCAT
1 GGTTAAATTGTGAAATAAATAAAAATCAT
73438541 GGTTAAATTGTGAAATAAATGAAAAAT-AT
1 GGTTAAATTGTGAAATAAAT-AAAAATCAT
73438570 GG
1 GG
73438572 GCTGCTAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.35
Consensus pattern (29 bp):
GGTTAAATTGTGAAATAAATAAAAATCAT
Found at i:73440536 original size:20 final size:20
Alignment explanation
Indices: 73440508--73440547 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
73440498 GTCCTCTGTA
* * *
73440508 GTTTGAAAATTTTTCTAAGT
1 GTTTCAAAAATTTCCTAAGT
73440528 GTTTCAAAAATTTCCTAAGT
1 GTTTCAAAAATTTCCTAAGT
73440548 TCTTGGTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
GTTTCAAAAATTTCCTAAGT
Found at i:73442590 original size:20 final size:20
Alignment explanation
Indices: 73442565--73442604 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
73442555 ATTTTAGAAA
73442565 AGCTTGTAAAGCTTATCTTG
1 AGCTTGTAAAGCTTATCTTG
73442585 AGCTTGTAAAGCTTATCTTG
1 AGCTTGTAAAGCTTATCTTG
73442605 CTTATGTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (20 bp):
AGCTTGTAAAGCTTATCTTG
Found at i:73442815 original size:24 final size:24
Alignment explanation
Indices: 73442787--73442848 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 24
73442777 AATGGCTCCG
73442787 ACAGAGTTGAAAGAATTGAAAGCT
1 ACAGAGTTGAAAGAATTGAAAGCT
73442811 ACAGAGTTGAAAGAATTGAAAGCT
1 ACAGAGTTGAAAGAATTGAAAGCT
73442835 --A-AGTTGAAAGAATT
1 ACAGAGTTGAAAGAATT
73442849 AATAGATAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
21 13 0.34
22 1 0.03
24 24 0.63
ACGTcount: A:0.47, C:0.06, G:0.24, T:0.23
Consensus pattern (24 bp):
ACAGAGTTGAAAGAATTGAAAGCT
Found at i:73447959 original size:13 final size:13
Alignment explanation
Indices: 73447941--73447971 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
73447931 GCACACAGGC
*
73447941 GTGTGACTTGGTT
1 GTGTGACTTGGCT
73447954 GTGTGACTTGGCT
1 GTGTGACTTGGCT
73447967 GTGTG
1 GTGTG
73447972 GCATAAGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.10, G:0.42, T:0.42
Consensus pattern (13 bp):
GTGTGACTTGGCT
Found at i:73450292 original size:41 final size:41
Alignment explanation
Indices: 73450222--73450423 Score: 316
Period size: 41 Copynumber: 5.0 Consensus size: 41
73450212 CTCATAGCTA
* *
73450222 AAGCTATCTCAA-ATCGCACACTAAGTGCCATTTATAGCCG
1 AAGCTATCTCAATCTCGCACACTAAGTGCCATATATAGCCG
* *
73450262 AAGCTATCTCAAGCTCGCACACTAAGTGCCATATATAGCTG
1 AAGCTATCTCAATCTCGCACACTAAGTGCCATATATAGCCG
* *
73450303 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCTG
1 AAGCTATCTCAATCTCGCACACTAAGTGCCATATATAGCCG
* *
73450344 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATGGCCG
1 AAGCTATCTCAATCTCGCACACTAAGTGCCATATATAGCCG
*
73450385 AAGCTATCTCAATCTCGCACACTAAGTGCCACATATAGC
1 AAGCTATCTCAATCTCGCACACTAAGTGCCATATATAGC
73450424 TAATTTGTTG
Statistics
Matches: 151, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 12 0.08
41 139 0.92
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (41 bp):
AAGCTATCTCAATCTCGCACACTAAGTGCCATATATAGCCG
Found at i:73470149 original size:18 final size:18
Alignment explanation
Indices: 73470110--73470148 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
73470100 TAACAGAGGC
73470110 AAAA-ATGTAATTGTGCT
1 AAAATATGTAATTGTGCT
73470127 AAAATATGTAAATTGTGCT
1 AAAATATGT-AATTGTGCT
73470146 AAA
1 AAA
73470149 TTATATGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 4 0.20
18 4 0.20
19 12 0.60
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.33
Consensus pattern (18 bp):
AAAATATGTAATTGTGCT
Found at i:73473889 original size:25 final size:25
Alignment explanation
Indices: 73473861--73473923 Score: 119
Period size: 25 Copynumber: 2.6 Consensus size: 25
73473851 ATACATATCA
73473861 ATATGACCATAATCCTATACGTGCC
1 ATATGACCATAATCCTATACGTGCC
73473886 ATATGACCATAATCCTATACGTGCC
1 ATATGACCATAATCCTATACGTGCC
73473911 ATATGACCA-AATC
1 ATATGACCATAATC
73473924 ATAAGCTCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 4 0.11
25 34 0.89
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (25 bp):
ATATGACCATAATCCTATACGTGCC
Found at i:73474377 original size:41 final size:41
Alignment explanation
Indices: 73474279--73474425 Score: 165
Period size: 41 Copynumber: 3.6 Consensus size: 41
73474269 ACTAGATATT
* * ** *
73474279 TTGCACACAAAGTGCCGGT-CATAGCTTAAGCTATCTCAAATC
1 TTGCACACTAAGTGCC-ATACATAGCCAAAGCTATCTC-GATC
*
73474321 --GCACACTAAGTGCCATACATAGCCGAAGCTATCTCGATC
1 TTGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGATC
*
73474360 TTGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGATC
1 TTGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGATC
* * *
73474401 TCGCACAGTAAGTGCCACACATAGC
1 TTGCACACTAAGTGCCATACATAGC
73474426 TAATTTGTCA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
39 4 0.04
40 29 0.32
41 58 0.64
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (41 bp):
TTGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGATC
Found at i:73475899 original size:24 final size:25
Alignment explanation
Indices: 73475858--73475977 Score: 79
Period size: 24 Copynumber: 4.8 Consensus size: 25
73475848 AGCCATATGA
*
73475858 CGGGAAGCTAC-GGAGAGCCATTAAT
1 CGGGAAGCT-CTGAAGAGCCATTAAT
* * *
73475883 -GGGAAGCTCAT-ATGAGCAAAT-AT
1 CGGGAAGCTC-TGAAGAGCCATTAAT
73475906 CGGGAAGCTCTGAAGAGCCATTAA-
1 CGGGAAGCTCTGAAGAGCCATTAAT
* * ** * *
73475930 CTGAAAGCTCACAAAGAGCCTTTACT
1 CGGGAAGCTC-TGAAGAGCCATTAAT
73475956 CGGGAAGCTCATGAAGAGCCAT
1 CGGGAAGCTC-TGAAGAGCCAT
73475978 ACTTTCGGAC
Statistics
Matches: 70, Mismatches: 18, Indels: 13
0.69 0.18 0.13
Matches are distributed among these distances:
23 4 0.06
24 38 0.54
25 11 0.16
26 17 0.24
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (25 bp):
CGGGAAGCTCTGAAGAGCCATTAAT
Found at i:73475938 original size:48 final size:50
Alignment explanation
Indices: 73475858--73475977 Score: 122
Period size: 48 Copynumber: 2.4 Consensus size: 50
73475848 AGCCATATGA
* * * *
73475858 CGGGAAGCTAC-GGAGAGCCATTAATGGGAAGCTCA-TATGAGCAAATA-T
1 CGGGAAGCT-CTGAAGAGCCATTAATGGAAAGCTCACAAAGAGCAAATACT
***
73475906 CGGGAAGCTCTGAAGAGCCATTAACT-GAAAGCTCACAAAGAGCCTTTACT
1 CGGGAAGCTCTGAAGAGCCATTAA-TGGAAAGCTCACAAAGAGCAAATACT
73475956 CGGGAAGCTCATGAAGAGCCAT
1 CGGGAAGCTC-TGAAGAGCCAT
73475978 ACTTTCGGAC
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
47 1 0.02
48 29 0.48
49 8 0.13
50 11 0.18
51 11 0.18
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (50 bp):
CGGGAAGCTCTGAAGAGCCATTAATGGAAAGCTCACAAAGAGCAAATACT
Found at i:73477853 original size:30 final size:29
Alignment explanation
Indices: 73477819--73477929 Score: 132
Period size: 29 Copynumber: 3.8 Consensus size: 29
73477809 TTTGCTAAAG
* * *
73477819 GATGGTTGAAACCATCCATTTTCTTTAATC
1 GATGGTCGAAACCATCCCTTTTC-ATAATC
* *
73477849 GATGGTCGAAACCATCCCTTTTCATATTT
1 GATGGTCGAAACCATCCCTTTTCATAATC
* *
73477878 GATGGTCGAAGCCATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATAATC
**
73477907 GATGGTCGTCACCATCCCTTTTC
1 GATGGTCGAAACCATCCCTTTTC
73477930 TTTAATTGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
29 50 0.70
30 21 0.30
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCATAATC
Found at i:73477923 original size:58 final size:59
Alignment explanation
Indices: 73477819--73477929 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 59
73477809 TTTGCTAAAG
* *
73477819 GATGGTTGAAACCATCCATTTTCTTTAATCGATGGTCGAAACCATCCCTTTTCATATTT
1 GATGGTCGAAACCATCCATTTTCTATAATCGATGGTCGAAACCATCCCTTTTCATATTT
* * * **
73477878 GATGGTCGAAGCCATCCCTTTTC-ATATTCGATGGTCGTCACCATCCCTTTTC
1 GATGGTCGAAACCATCCATTTTCTATAATCGATGGTCGAAACCATCCCTTTTC
73477930 TTTAATTGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 25 0.56
59 20 0.44
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (59 bp):
GATGGTCGAAACCATCCATTTTCTATAATCGATGGTCGAAACCATCCCTTTTCATATTT
Found at i:73500970 original size:40 final size:40
Alignment explanation
Indices: 73500915--73501010 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
73500905 TTATTGAATA
*
73500915 ATTGCACTTACGTGCCCTTGTTTGT-ACTGT-GGTACCGCTG
1 ATTGCACTTACGTGCCCTTGTTT-TAACT-TCAGTACCGCTG
* *
73500955 ATTGCACTTATGTGCCCTTGTTTTAACTTCAGTACCTCTG
1 ATTGCACTTACGTGCCCTTGTTTTAACTTCAGTACCGCTG
*
73500995 ATTGCACTTTCGTGCC
1 ATTGCACTTACGTGCC
73501011 TGTAACACCC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.04
40 47 0.96
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.40
Consensus pattern (40 bp):
ATTGCACTTACGTGCCCTTGTTTTAACTTCAGTACCGCTG
Found at i:73501745 original size:27 final size:27
Alignment explanation
Indices: 73501659--73501738 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
73501649 GGNATTACCG
*
73501659 TTTACCCTCGATTTATAGAATTACTAT
1 TTTACCCTCGATTTACAGAATTACTAT
* *
73501686 TTTACCATTGATTTACAGAATTACTAT
1 TTTACCCTCGATTTACAGAATTACTAT
*
73501713 TTTACCCTCGATTTACAAAATTACTA
1 TTTACCCTCGATTTACAGAATTACTA
73501739 AAATACCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.42
Consensus pattern (27 bp):
TTTACCCTCGATTTACAGAATTACTAT
Found at i:73501836 original size:28 final size:27
Alignment explanation
Indices: 73501803--73501883 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
73501793 TTAGAATACT
*
73501803 TTAGTTTACTAAAATTA-TCGAAATACCC
1 TTAGTTT-CTAAAAATACT-GAAATACCC
*
73501831 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACTGAAATACCC
* * *
73501858 -TCGATTTGTAAAATTACTGAAATACC
1 TTAG-TTTCTAAAAATACTGAAATACC
73501884 TTCGACTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.04
27 37 0.79
28 8 0.17
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACTGAAATACCC
Found at i:73501842 original size:27 final size:28
Alignment explanation
Indices: 73501812--73501901 Score: 107
Period size: 27 Copynumber: 3.3 Consensus size: 28
73501802 TTTAGTTTAC
73501812 TAAAATTA-TCGAAATACCCTTAG-TTTG
1 TAAAATTACT-GAAATACCCTTAGATTTG
* *
73501839 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* *
73501866 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
73501893 TAAAATTAC
1 TAAAATTAC
73501902 CAAGGTACCC
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.07
27 51 0.91
28 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (28 bp):
TAAAATTACTGAAATACCCTTAGATTTG
Found at i:73501926 original size:27 final size:27
Alignment explanation
Indices: 73501907--73502170 Score: 314
Period size: 27 Copynumber: 9.8 Consensus size: 27
73501897 ATTACCAAGG
* *
73501907 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* *
73501934 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* *
73501961 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACATAATTACCGTTT
*
73501988 TACCCTCGATTTACATAATTACCATTT
1 TACCCTCGATTTACATAATTACCGTTT
*
73502015 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* * * *
73502042 TACCCTTGACTTACAAAATTATCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
*
73502069 TACCCTCGATTTACAGAATTACCG-TT
1 TACCCTCGATTTACATAATTACCGTTT
* * **
73502095 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACATAATTACCGTTT
* * * **
73502122 TACCATTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACATAATTACCGTTT
*
73502149 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACATAATTAC
73502171 TAAAATACCA
Statistics
Matches: 207, Mismatches: 29, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.11
27 184 0.89
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACATAATTACCGTTT
Found at i:73501998 original size:81 final size:81
Alignment explanation
Indices: 73501907--73502170 Score: 361
Period size: 81 Copynumber: 3.3 Consensus size: 81
73501897 ATTACCAAGG
* * * *
73501907 TACCCCCGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATT
73501972 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
* * * *
73501988 TACCCTCGATTTACATAATTACCATTTTACCCCCGATTTACATAATTACCGTTTTACCCTTGACT
1 TACCCTCGATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATT
*
73502053 TACAAAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* * ** *
73502069 TACCCTCGATTTACAGAATTACCG-TTTACCCTCGATTTATAGAATTACTATTTTACCATTGATT
1 TACCCTCGATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATT
*
73502133 TACAGAATTACTATTT
66 TACAGAATTACTGTTT
*
73502149 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACATAATTAC
73502171 TAAAATACCA
Statistics
Matches: 160, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
80 67 0.42
81 93 0.58
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATT
TACAGAATTACTGTTT
Found at i:73502270 original size:28 final size:27
Alignment explanation
Indices: 73502237--73502317 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
73502227 TTAGAATACT
*
73502237 TTAGTTTACTAAAATTA-TCGAAATACCC
1 TTAGTTT-CTAAAAATACT-GAAATACCC
*
73502265 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACTGAAATACCC
* * *
73502292 -TCGATTTGTAAAATTACTGAAATACC
1 TTAG-TTTCTAAAAATACTGAAATACC
73502318 TTCGACTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.04
27 37 0.79
28 8 0.17
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACTGAAATACCC
Found at i:73502276 original size:27 final size:28
Alignment explanation
Indices: 73502246--73502335 Score: 107
Period size: 27 Copynumber: 3.3 Consensus size: 28
73502236 TTTAGTTTAC
73502246 TAAAATTA-TCGAAATACCCTTAG-TTTG
1 TAAAATTACT-GAAATACCCTTAGATTTG
* *
73502273 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* *
73502300 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
73502327 TAAAATTAC
1 TAAAATTAC
73502336 CAAAGTACCC
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.07
27 51 0.91
28 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (28 bp):
TAAAATTACTGAAATACCCTTAGATTTG
Found at i:73502516 original size:80 final size:80
Alignment explanation
Indices: 73502347--73502550 Score: 257
Period size: 80 Copynumber: 2.5 Consensus size: 80
73502337 AAAGTACCCC
* * * * * *
73502347 TGATTTACAAAATTACCATTTTACCCCCAATTTACATAATTACCATTTTACCCCCGATTTACATA
1 TGATTTACAAAATTA-CGTTTTACCCTCGATTTACAAAATTACCAGTTTACCCCCGATTTACAGA
*
73502412 ATTACCGTTTTACCCT
65 ATTACCGTTTTACCAT
* * * *
73502428 TGACTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACC-GTTTACCCTCGATTTATAGA
1 TGATTTACAAAATTA-CGTTTTACCCTCGATTTACAAAATTACCAGTTTACCCCCGATTTACAGA
*
73502492 ATTACTGTTTTACCAT
65 ATTACCGTTTTACCAT
*
73502508 TGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
1 TGATTTACAAAATTAC-GTTTTACCCTCGATTTACAAAATTAC
73502551 TAAAATACCA
Statistics
Matches: 107, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
79 1 0.01
80 68 0.64
81 38 0.36
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (80 bp):
TGATTTACAAAATTACGTTTTACCCTCGATTTACAAAATTACCAGTTTACCCCCGATTTACAGAA
TTACCGTTTTACCAT
Found at i:73502551 original size:27 final size:27
Alignment explanation
Indices: 73502344--73502550 Score: 238
Period size: 27 Copynumber: 7.7 Consensus size: 27
73502334 ACCAAAGTAC
*
73502344 CCCT-GATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * * *
73502370 CCCCCAATTTACATAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
73502397 CCCCCGATTTACATAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * *
73502424 CCCTTGACTTACAAAATTATCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
73502451 CCCTCGATTTACAGAATTACCG-TTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * *
73502477 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * * *
73502504 CCATTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
73502531 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAAAATTAC
73502551 TAAAATACCA
Statistics
Matches: 157, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 27 0.17
27 130 0.83
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:73502563 original size:434 final size:434
Alignment explanation
Indices: 73501652--73502552 Score: 1509
Period size: 434 Copynumber: 2.1 Consensus size: 434
73501642 CTTTCTTGGN
73501652 ATTACCGTTTACCCTCGATTTATAGAATTACTATTTTACCATTGATTTACAGAATTACTATTTTA
1 ATTACCGTTTACCCTCGATTTATAGAATTACTATTTTACCATTGATTTACAGAATTACTATTTTA
73501717 CCCTCGATTTACAAAATTACTAAAATACCATTGGTTCGTAAATAGGCTTTAGGCCCATTCGTATT
66 CCCTCGATTTACAAAATTACTAAAATACCATTGGTTCGTAAATAGGCTTTAGGCCCATTCGTATT
73501782 GTTATCCCTGTTTAGAATACTTTAGTTTACTAAAATTATCGAAATACCCTTAGTTTGTAAAAATA
131 GTTATCCCTGTTTAGAATACTTTAGTTTACTAAAATTATCGAAATACCCTTAGTTTGTAAAAATA
*
73501847 CTGAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAGGTACCC
196 CTGAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCC
* * * * * * *
73501912 CCGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAG
261 CCGATTTACAAAATTACCATTTTACCCCCAACTTACAGAATTACCATTTTACCCCCGATTTACAG
* * * *
73501977 AATTACTGTTTTACCCTCGATTTACATAATTACCATTTTACCCCCGATTTACATAATTACCGTTT
326 AATTACCGTTTTACCCTCGACTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACCGTTT
* *
73502042 TACCCTTGACTTACAAAATTATCGTTTTACCCTCGATTTACAGA
391 TACCCTCGACTTACAAAATTATCGTTTTACCATCGATTTACAGA
73502086 ATTACCGTTTACCCTCGATTTATAGAATTACTATTTTACCATTGATTTACAGAATTACTATTTTA
1 ATTACCGTTTACCCTCGATTTATAGAATTACTATTTTACCATTGATTTACAGAATTACTATTTTA
73502151 CCCTCGATTTACAAAATTACTAAAATACCATTGGTTCGTAAATAGGCTTTAGGCCCATTCGTATT
66 CCCTCGATTTACAAAATTACTAAAATACCATTGGTTCGTAAATAGGCTTTAGGCCCATTCGTATT
73502216 GTTATCCCTGTTTAGAATACTTTAGTTTACTAAAATTATCGAAATACCCTTAGTTTGTAAAAATA
131 GTTATCCCTGTTTAGAATACTTTAGTTTACTAAAATTATCGAAATACCCTTAGTTTGTAAAAATA
73502281 CTGAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCC
196 CTGAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCC
* * * *
73502346 CTGATTTACAAAATTACCATTTTACCCCCAATTTACATAATTACCATTTTACCCCCGATTTACAT
261 CCGATTTACAAAATTACCATTTTACCCCCAACTTACAGAATTACCATTTTACCCCCGATTTACAG
* * * *
73502411 AATTACCGTTTTACCCTTGACTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCG-TT
326 AATTACCGTTTTACCCTCGACTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACCGTTT
* * * *
73502475 TACCCTCGATTTATAGAATTA-CTGTTTTACCATTGATTTACAGA
391 TACCCTCGACTTACAAAATTATC-GTTTTACCATCGATTTACAGA
* * *
73502519 ATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 ATTACCG-TTTACCCTCGATTTATAGAATTACTA
73502553 AAATACCATT
Statistics
Matches: 436, Mismatches: 29, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
432 1 0.00
433 44 0.10
434 391 0.90
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.38
Consensus pattern (434 bp):
ATTACCGTTTACCCTCGATTTATAGAATTACTATTTTACCATTGATTTACAGAATTACTATTTTA
CCCTCGATTTACAAAATTACTAAAATACCATTGGTTCGTAAATAGGCTTTAGGCCCATTCGTATT
GTTATCCCTGTTTAGAATACTTTAGTTTACTAAAATTATCGAAATACCCTTAGTTTGTAAAAATA
CTGAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCC
CCGATTTACAAAATTACCATTTTACCCCCAACTTACAGAATTACCATTTTACCCCCGATTTACAG
AATTACCGTTTTACCCTCGACTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACCGTTT
TACCCTCGACTTACAAAATTATCGTTTTACCATCGATTTACAGA
Found at i:73502592 original size:36 final size:36
Alignment explanation
Indices: 73502543--73502612 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
73502533 CTCGATTTAC
* *
73502543 AAAATTACTAAAATACCATTGGTTCGTAAAATTAGT
1 AAAATTACCAAAATACCACTGGTTCGTAAAATTAGT
* *
73502579 AAAATTACCAAAATACCACTGGTTTGTGAAATTA
1 AAAATTACCAAAATACCACTGGTTCGTAAAATTA
73502613 TTGAAATACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.31
Consensus pattern (36 bp):
AAAATTACCAAAATACCACTGGTTCGTAAAATTAGT
Found at i:73502611 original size:27 final size:27
Alignment explanation
Indices: 73502572--73502678 Score: 85
Period size: 27 Copynumber: 4.0 Consensus size: 27
73502562 TGGTTCGTAA
*
73502572 AATTAGTAAAATTACCAAAATACCACT-
1 AATTTGTAAAATTACCAAAATACC-CTC
** * ***
73502599 GGTTTGTGAAATTATTGAAATACCCTC
1 AATTTGTAAAATTACCAAAATACCCTC
73502626 AATTTGTAAAATTACCAAAATACCC-C
1 AATTTGTAAAATTACCAAAATACCCTC
* *
73502652 TAATTTATAAAGTTA-CAGAAATACCCT
1 -AATTTGTAAAATTACCA-AAATACCCT
73502679 TGACTTTCTA
Statistics
Matches: 61, Mismatches: 15, Indels: 7
0.73 0.18 0.08
Matches are distributed among these distances:
26 5 0.08
27 56 0.92
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTTGTAAAATTACCAAAATACCCTC
Found at i:73502673 original size:54 final size:54
Alignment explanation
Indices: 73502572--73502678 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
73502562 TGGTTCGTAA
** * **
73502572 AATTAGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATTGAAATACCCTC
1 AATTAGTAAAATTACCAAAATACCACTAATTTATGAAATTACAGAAATACCCTC
* *
73502626 AATTTGTAAAATTACCAAAATACCCCTAATTTAT-AAAGTTACAGAAATACCCT
1 AATTAGTAAAATTACCAAAATACCACTAATTTATGAAA-TTACAGAAATACCCT
73502679 TGACTTTCTA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 3 0.07
54 42 0.93
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTAGTAAAATTACCAAAATACCACTAATTTATGAAATTACAGAAATACCCTC
Found at i:73502728 original size:27 final size:27
Alignment explanation
Indices: 73502689--73502740 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
73502679 TGACTTTCTA
73502689 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
73502716 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
73502741 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:73502817 original size:27 final size:27
Alignment explanation
Indices: 73502786--73502853 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
73502776 GCTAAAATAG
73502786 CCCTATTA-GGTAAAAAAACCGTAAAGC
1 CCCTA-TAGGGTAAAAAAACCGTAAAGC
***
73502813 CCCTATAGGGTAAAGTGACCGTAAAGC
1 CCCTATAGGGTAAAAAAACCGTAAAGC
*
73502840 CCCTGTAGGGTAAA
1 CCCTATAGGGTAAA
73502854 GTGACCGTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
CCCTATAGGGTAAAAAAACCGTAAAGC
Found at i:73502854 original size:27 final size:27
Alignment explanation
Indices: 73502803--73502880 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
73502793 AGGTAAAAAA
*
73502803 ACCGTAAAGCCCCTATAGGGTAAAGTG
1 ACCGTAAAGCCCCTGTAGGGTAAAGTG
73502830 ACCGTAAAGCCCCTGTAGGGTAAAGTG
1 ACCGTAAAGCCCCTGTAGGGTAAAGTG
*
73502857 ACCGTAATA-CCCCTGTATGGTAAA
1 ACCGTAA-AGCCCCTGTAGGGTAAA
73502881 ATAACGAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (27 bp):
ACCGTAAAGCCCCTGTAGGGTAAAGTG
Found at i:73503704 original size:25 final size:25
Alignment explanation
Indices: 73503666--73503735 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
73503656 AGGAAGTGCT
* *
73503666 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
73503691 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
73503716 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
73503736 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:73503748 original size:24 final size:24
Alignment explanation
Indices: 73503665--73503760 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
73503655 GAGGAAGTGC
*
73503665 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
73503690 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
73503714 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
73503738 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
73503761 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:73503759 original size:50 final size:50
Alignment explanation
Indices: 73503666--73503760 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
73503656 AGGAAGTGCT
**
73503666 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
73503716 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
73503761 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:73503971 original size:42 final size:42
Alignment explanation
Indices: 73503885--73503974 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
73503875 GTCTCCCCAT
* ** * *
73503885 ATGGGCTTGCATACATTCATTGGTATTTCATATGATATTGAA
1 ATGGGCTTGCATACATCCATTGACATTACATATGACATTGAA
* *
73503927 ATGGGCTTGCATACATCCATTGACATTACATGTGACATTTAA
1 ATGGGCTTGCATACATCCATTGACATTACATATGACATTGAA
73503969 ATGGGC
1 ATGGGC
73503975 CTAAGGGCCA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (42 bp):
ATGGGCTTGCATACATCCATTGACATTACATATGACATTGAA
Found at i:73504034 original size:30 final size:30
Alignment explanation
Indices: 73503998--73504068 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 30
73503988 CGTTTACAGT
*
73503998 AAAGGCTTCGATCAGTGATATGATTTATGA
1 AAAGGCTTCGACCAGTGATATGATTTATGA
*
73504028 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTC-GACCAGTGATATGATTTATGA
73504059 AAAGGCTTCG
1 AAAGGCTTCG
73504069 GCCCAGTAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 10 0.26
31 28 0.74
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGACCAGTGATATGATTTATGA
Found at i:73504048 original size:31 final size:31
Alignment explanation
Indices: 73504010--73504075 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
73504000 AGGCTTCGAT
73504010 CAGTGATATGATTTATGAAAAGGCTTCGGCC
1 CAGTGATATGATTTATGAAAAGGCTTCGGCC
73504041 CAGTGATATGATTTATGAAAAGGCTTCGGCC
1 CAGTGATATGATTTATGAAAAGGCTTCGGCC
73504072 CAGT
1 CAGT
73504076 AACCGTTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (31 bp):
CAGTGATATGATTTATGAAAAGGCTTCGGCC
Found at i:73512555 original size:27 final size:26
Alignment explanation
Indices: 73512517--73512602 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
73512507 GGAGGAAGTA
73512517 TTCTGGTGGCTCTACAACAAATATCTG
1 TTCTGGTGGCTCTACAAC-AATATCTG
*
73512544 TTCTGGTGGCTCTACCACAATATCTG
1 TTCTGGTGGCTCTACAACAATATCTG
* * *
73512570 TATCTGGTGACGCTATC-ACAATATTTG
1 T-TCTGGTGGCTCTA-CAACAATATCTG
73512597 TTCTGG
1 TTCTGG
73512603 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
26 14 0.26
27 38 0.72
28 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTCTACAACAATATCTG
Found at i:73520371 original size:27 final size:27
Alignment explanation
Indices: 73520311--73520364 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
73520301 GGAGGAAGTA
*
73520311 TTCTAGTGGCTCTGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCACAAATATCTG
73520338 TTCTGGTGGCTCTGCCAC-AATATCTG
1 TTCTGGTGGCTCTGCCACAAATATCTG
73520364 T
1 T
73520365 ATTTGGTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAAATATCTG
Done.