Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 221 of 276
Found at i:73531945 original size:38 final size:38
Alignment explanation
Indices: 73531847--73532088 Score: 333
Period size: 38 Copynumber: 6.3 Consensus size: 38
73531837 CGAGGTATAA
* * *
73531847 AACCCGAATATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * * * *
73531886 GAACTCAGATATAATATCAGCACTAGGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
73531925 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
73531963 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
73532001 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* * *
73532039 AACCCGGATATAATTCCAGCA-TATAGCCTGCGGGTCTTT
1 AACCCGGATATAATACCAGCACGA-AGCCTGCGGG-ATTT
73532078 AAGCCCGGATA
1 AA-CCCGGATA
73532089 CACATCAAAT
Statistics
Matches: 183, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
37 1 0.01
38 139 0.76
39 8 0.04
40 35 0.19
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:73534838 original size:24 final size:24
Alignment explanation
Indices: 73534670--73534836 Score: 307
Period size: 24 Copynumber: 7.0 Consensus size: 24
73534660 CTGTCAGGAG
73534670 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
73534694 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
73534718 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
73534742 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
73534766 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
73534790 AGGATTTAGGAGTTGATAAGGGAG
1 AGGATTTAGGAGTTGATAAGGGAT
* *
73534814 AGGATTTAGGAGCTGATTAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
73534837 GAACAGTGTT
Statistics
Matches: 140, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.33, C:0.01, G:0.38, T:0.28
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:73536355 original size:26 final size:26
Alignment explanation
Indices: 73536248--73536358 Score: 105
Period size: 27 Copynumber: 4.2 Consensus size: 26
73536238 AGGAAGCATC
* * * *
73536248 CTGGTGGCTATGCCATATTTATCTGAT
1 CTGGTGACTCTGCCACA-TTATCTGTT
* *
73536275 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGACTCTGCCACAT-TATCTGTT
*
73536302 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGACTCTGCCAC-ATTATCTGTT
* * *
73536329 CTTGTGATTCTGTCACATTATCTGTT
1 CTGGTGACTCTGCCACATTATCTGTT
73536355 CTGG
1 CTGG
73536359 CAGCAATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.19
27 56 0.78
28 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.41
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGTT
Found at i:73541772 original size:24 final size:24
Alignment explanation
Indices: 73541740--73541836 Score: 158
Period size: 24 Copynumber: 4.0 Consensus size: 24
73541730 CTGTCAGGAG
*
73541740 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCTGATAAGGGAT
*
73541764 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCTGATAAGGGAT
*
73541788 AGGATTTAGGAGCTGATAAGGGAG
1 AGGATTTAGGAGCTGATAAGGGAT
*
73541812 AGGATTTAGGAGCTGATTAGGGAT
1 AGGATTTAGGAGCTGATAAGGGAT
73541836 A
1 A
73541837 ACAGTGTTGG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.33, C:0.02, G:0.38, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGCTGATAAGGGAT
Found at i:73542825 original size:16 final size:15
Alignment explanation
Indices: 73542799--73542830 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
73542789 ACTAGATTGG
73542799 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
73542814 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
73542830 C
1 C
73542831 GGCATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:73543285 original size:27 final size:27
Alignment explanation
Indices: 73543245--73543355 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
73543235 AGGAAGCGTC
*
73543245 CTGGTGGCTATGCCACATTTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
73543272 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* * *
73543299 CTGGTGGCTCTACCACAATTATCTTTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* ** *
73543326 TTGGTAACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
73543352 CTGG
1 CTGG
73543356 CAGAAATGCT
Statistics
Matches: 70, Mismatches: 14, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
26 11 0.16
27 59 0.84
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.41
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:73544561 original size:13 final size:13
Alignment explanation
Indices: 73544539--73544575 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
73544529 TTGGATATTT
73544539 ATTT-ATGCTATG
1 ATTTGATGCTATG
73544551 ATTTGATGCTATG
1 ATTTGATGCTATG
*
73544564 ATTTGGTGCTAT
1 ATTTGATGCTAT
73544576 TTTGGTTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.22, C:0.08, G:0.22, T:0.49
Consensus pattern (13 bp):
ATTTGATGCTATG
Found at i:73546419 original size:22 final size:22
Alignment explanation
Indices: 73546394--73546438 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
73546384 AGTTGCAGTG
73546394 ATGTGAATTTGAAAAATCACCC
1 ATGTGAATTTGAAAAATCACCC
73546416 ATGTGAATTTGAAAAATCACCC
1 ATGTGAATTTGAAAAATCACCC
73546438 A
1 A
73546439 AAATAGTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (22 bp):
ATGTGAATTTGAAAAATCACCC
Found at i:73551347 original size:51 final size:51
Alignment explanation
Indices: 73551271--73551372 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
73551261 AAAAAGTTAC
73551271 AAGAAGCTTTGGGCACAAAATTGAACTTTAGTACCGCGTTTCATCCACAAA
1 AAGAAGCTTTGGGCACAAAATTGAACTTTAGTACCGCGTTTCATCCACAAA
*
73551322 AAGAAGCTTTGGGCACAAAATTGAACTTTAGTACCGCGTTTCATCCCCAAA
1 AAGAAGCTTTGGGCACAAAATTGAACTTTAGTACCGCGTTTCATCCACAAA
73551373 GAGATGGTCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (51 bp):
AAGAAGCTTTGGGCACAAAATTGAACTTTAGTACCGCGTTTCATCCACAAA
Found at i:73561499 original size:27 final size:27
Alignment explanation
Indices: 73561468--73561665 Score: 218
Period size: 27 Copynumber: 7.3 Consensus size: 27
73561458 TACTAAAATG
*
73561468 CCCTCGATTTGTAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
73561495 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
73561522 CCATCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
73561549 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * *
73561576 CACTCGATTTAGAGAATTTCCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
73561603 CCCTCGATTTACAAAATTATCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
73561630 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTA
*
73561657 CCCTTGATT
1 CCCTCGATT
73561666 GTGAAATTAC
Statistics
Matches: 144, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:73561610 original size:81 final size:81
Alignment explanation
Indices: 73561468--73561657 Score: 247
Period size: 81 Copynumber: 2.3 Consensus size: 81
73561458 TACTAAAATG
* * * *
73561468 CCCTCGATTTGTAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCATCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACACTCGATTTAGAGAATTACCATTTCACCATCGATTTA
*
73561533 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* * * * *
73561549 CCCTCGATTTATAGAATTACTATTTTACACTCGATTTAGAGAATTTCCATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACACTCGATTTAGAGAATTACCATTTCACCATCGATTTA
*
73561614 CAAAATTATCATTTTA
66 CAAAATTACCATTTTA
* *
73561630 CCCTC-AGTTTACAAAATTACCGTTTTAC
1 CCCTCGA-TTTATAAAATTACCATTTTAC
73561658 CCTTGATTGT
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 92 0.99
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCATTTTACACTCGATTTAGAGAATTACCATTTCACCATCGATTTA
CAAAATTACCATTTTA
Found at i:73561727 original size:27 final size:27
Alignment explanation
Indices: 73561664--73561874 Score: 241
Period size: 27 Copynumber: 7.8 Consensus size: 27
73561654 TTACCCTTGA
* *
73561664 TTGTGAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** * *
73561690 AGGATAGAATTATCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
*
73561718 TTGTAAAATTAGCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
73561745 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
73561772 TTGTAAAATTACCAAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
73561799 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
73561826 TTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACCAAAATACCCCTAG-T
**
73561853 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
73561875 TTGACTTTCT
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.04
27 145 0.92
28 7 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:73561862 original size:54 final size:54
Alignment explanation
Indices: 73561717--73561931 Score: 202
Period size: 54 Copynumber: 3.9 Consensus size: 54
73561707 ATACCCCTAG
* * ** * *
73561717 TTTGTAAAATTAGCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAG
1 TTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCGAAATACCCTC-AA
***
73561771 TTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCGAAATACCCTCAA
* * * *
73561825 TTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTAG-TTTACAAAATTACCGAAATACCC-TCAA
* * * * *
73561880 TTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 TTTGT-AAAATTACCA-AAATACCACTAGTTTACAAAATTACCGAAATACCCT
73561932 TGGTTTCTAG
Statistics
Matches: 138, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.01
54 90 0.65
55 9 0.07
56 37 0.27
57 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCGAAATACCCTCAA
Found at i:73561925 original size:27 final size:27
Alignment explanation
Indices: 73561830--73561937 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
73561820 CTCAATTTGT
** * *
73561830 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
73561857 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
73561884 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
73561913 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
73561938 CTAGATTTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
27 41 0.61
28 7 0.10
29 19 0.28
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:73562021 original size:27 final size:27
Alignment explanation
Indices: 73561991--73562051 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
73561981 ACCCCTAATA
73561991 GGTAAAAAGACCGTAAAACCCCT-GTAG
1 GGTAAAAAGACCGTAAAA-CCCTGGTAG
** * *
73562018 GGTAAAGTGACCGTAATACCCTGGTAT
1 GGTAAAAAGACCGTAAAACCCTGGTAG
73562045 GGTAAAA
1 GGTAAAA
73562052 TAACGAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.14
27 24 0.86
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAACCCTGGTAG
Found at i:73563384 original size:27 final size:27
Alignment explanation
Indices: 73563354--73563605 Score: 272
Period size: 27 Copynumber: 9.3 Consensus size: 27
73563344 TACTAAAATG
*
73563354 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
73563381 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
73563408 CCATCGATTTGTAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
73563435 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
73563462 CCATCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
73563489 CCCTCGATTTAAAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
** * *
73563516 AACTCGATTTAGAGAATTTCCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
73563543 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
73563570 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
*
73563597 CCCTTGATT
1 CCCTCGATT
73563606 GTGAAATTAC
Statistics
Matches: 189, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 187 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:73563480 original size:81 final size:80
Alignment explanation
Indices: 73563354--73563605 Score: 308
Period size: 81 Copynumber: 3.1 Consensus size: 80
73563344 TACTAAAATG
* * * * *
73563354 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCATCGATTTG
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT-
*
73563419 TAAAATTACCATTTTA
65 AAAAATTACCATTTTA
* * *
73563435 CCCTCGATTTATAGAATTACCGTTTCACCATCGATTTACAAAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTA
*
73563500 AAGAATTACTATTTTA
66 AA-AATTACCATTTTA
** * * *
73563516 AACTCGATTTAGAGAATTTCCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGA-TTT
*
73563580 ACAAAATTACCGTTTTA
65 A-AAAATTACCATTTTA
*
73563597 CCCTTGATT
1 CCCTCGATT
73563606 GTGAAATTAC
Statistics
Matches: 145, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
80 3 0.02
81 140 0.97
82 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (80 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTA
AAAATTACCATTTTA
Found at i:73563667 original size:27 final size:27
Alignment explanation
Indices: 73563604--73563814 Score: 248
Period size: 27 Copynumber: 7.8 Consensus size: 27
73563594 TTACCCTTGA
* *
73563604 TTGTGAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** * *
73563630 AGGATAGAATTATCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
*
73563658 TTGTAAAATTAGCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
73563685 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
73563712 TTGTAAAATTACCAAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
73563739 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
*
73563766 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
**
73563793 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
73563815 TTGACTTTCT
Statistics
Matches: 160, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
26 6 0.04
27 147 0.92
28 7 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:73563865 original size:27 final size:27
Alignment explanation
Indices: 73563792--73563877 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
73563782 ATACCCCTAA
* *
73563792 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
*
73563820 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCCTTGG
73563848 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
73563875 TTT
1 TTT
73563878 CTAGATTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 23 0.47
28 7 0.14
29 19 0.39
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:73564657 original size:25 final size:25
Alignment explanation
Indices: 73564624--73564689 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
73564614 CCTAAGTGCT
* * *
73564624 AAAACGGCTGTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
73564649 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
73564674 AAAAGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
73564690 TGTTGTTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:73564706 original size:24 final size:25
Alignment explanation
Indices: 73564629--73564706 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
73564619 GTGCTAAAAC
* *
73564629 GGCTGTGCCCCAGTTTACCGAAAAG-
1 GGCTTTGCCCCAGTTTATC-AAAAGA
73564654 GGCTTTGCCCCAGTTTATCAAAA-A
1 GGCTTTGCCCCAGTTTATCAAAAGA
*
73564678 GGGCTTTGCCCCTGTTGT-T-AAAAGA
1 -GGCTTTGCCCCAGTT-TATCAAAAGA
73564703 GGCT
1 GGCT
73564707 AGGCCTTCAG
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
24 12 0.26
25 33 0.72
26 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (25 bp):
GGCTTTGCCCCAGTTTATCAAAAGA
Found at i:73564960 original size:31 final size:31
Alignment explanation
Indices: 73564909--73565053 Score: 204
Period size: 31 Copynumber: 4.7 Consensus size: 31
73564899 CGCTTACAGT
73564909 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
73564939 AAAGGCTTCGGCCTAGTGATATCATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
73564970 AAAGGCTTCGACCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
73565001 AAAGGCTTTGGCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
73565032 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
73565054 TCAAGACTAA
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
30 16 0.16
31 84 0.84
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:73567350 original size:27 final size:27
Alignment explanation
Indices: 73567320--73567489 Score: 227
Period size: 27 Copynumber: 6.3 Consensus size: 27
73567310 TACTGAAATG
*
73567320 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
73567347 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
73567374 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
73567401 CCCTC-AATTACAGAATCACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
73567427 CCCTCGATTTACAAAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
73567454 CCCTC-AGTTTATAAAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
73567481 CCCTCGATT
1 CCCTCGATT
73567490 GTGAAATTAC
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.18
27 102 0.81
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:73567445 original size:80 final size:80
Alignment explanation
Indices: 73567332--73567485 Score: 229
Period size: 80 Copynumber: 1.9 Consensus size: 80
73567322 CTCGATTTGT
* * * * *
73567332 AGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-GATTTATAGAATTACCA
1 AGAATCACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAG-TTTATAAAATTACCA
73567396 TTTTACCCTCAATTAC
65 TTTTACCCTCAATTAC
* *
73567412 AGAATCACCGTTTTACCCTCGATTTACAAAATTATCATTTTACCCTCAGTTTATAAAATTACCAT
1 AGAATCACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTATAAAATTACCAT
73567477 TTTACCCTC
66 TTTACCCTC
73567486 GATTGTGAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 65 0.98
81 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (80 bp):
AGAATCACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTATAAAATTACCAT
TTTACCCTCAATTAC
Found at i:73567577 original size:69 final size:68
Alignment explanation
Indices: 73567466--73567602 Score: 211
Period size: 69 Copynumber: 2.0 Consensus size: 68
73567456 CTCAGTTTAT
* *
73567466 AAAATTACCATTTTACCCTCGATTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTACCAAA
1 AAAATTACCATTTTACCCTCGATTGTGAAATTACTAAAATACCCCTATAGGATAGAATTACCAAA
73567531 ATA
66 ATA
* * * *
73567534 NAAAATTATCGTTTTACCCTCGATTGTGAAATTACTAAAATACCCCTATAGGGTGGAATTACCAA
1 -AAAATTACCATTTTACCCTCGATTGTGAAATTACTAAAATACCCCTATAGGATAGAATTACCAA
73567599 AATA
65 AATA
73567603 CCCCTAGTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (68 bp):
AAAATTACCATTTTACCCTCGATTGTGAAATTACTAAAATACCCCTATAGGATAGAATTACCAAA
ATA
Found at i:73567620 original size:27 final size:27
Alignment explanation
Indices: 73567590--73567740 Score: 137
Period size: 27 Copynumber: 5.6 Consensus size: 27
73567580 TATAGGGTGG
73567590 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
73567617 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
73567644 AATTATCGAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
73567671 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
73567698 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
73567725 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
73567741 TTGACTTTCT
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.05
27 97 0.92
28 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:73567629 original size:54 final size:53
Alignment explanation
Indices: 73567557--73567740 Score: 163
Period size: 54 Copynumber: 3.4 Consensus size: 53
73567547 TTACCCTCGA
* ** ** *
73567557 TTGTGAAATTACTAAAATACCCCTATAGGGTGGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCCTAT-TTGTGAAATTACCAAAATACCCCTAGT
* * * * *
73567611 TTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCACTAGT
1 TTGTAAAATTACCGAAATACCCCT-ATTTGTGAAATTACCAAAATACCCCTAGT
* * * *
73567665 TTGTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACCGAAATACCC-CTATTTGTGAAATTACCAAAATACCCCTAG-T
** *
73567719 TTACAAAATTACAGAAATACCC
1 TTGTAAAATTACCGAAATACCC
73567741 TTGACTTTCT
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
53 1 0.01
54 99 0.97
55 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCGAAATACCCCTATTTGTGAAATTACCAAAATACCCCTAGT
Found at i:73567741 original size:54 final size:52
Alignment explanation
Indices: 73567590--73567797 Score: 150
Period size: 54 Copynumber: 3.8 Consensus size: 52
73567580 TATAGGGTGG
* ** ** *
73567590 AATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCACTAGTTTACAAAATTA-CGAAATACC-CTAATTTGTAA
* * ***
73567644 AATTATCGAAATACCACTAGTTTGTGAAATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCACTAGTTTACAAAATTA-CGAAATACCCT-AATTTGTAA
* * *
73567698 AATTACCAAAATACCCCT-GATTTACAAAATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCACTAG-TTTACAAAATTAC-GAAATACCC-T-AATTTGT-AA
* * *
73567754 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 AATTACCA-AAATACCACTAGTTTACAAAATTAC-GAAATACCCT
73567798 TGGTTTGTAG
Statistics
Matches: 126, Mismatches: 21, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
53 4 0.03
54 76 0.60
55 8 0.06
56 37 0.29
57 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (52 bp):
AATTACCAAAATACCACTAGTTTACAAAATTACGAAATACCCTAATTTGTAA
Found at i:73567791 original size:27 final size:27
Alignment explanation
Indices: 73567696--73567803 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
73567686 CTCAATTTGT
** * *
73567696 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
73567723 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
73567750 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
73567779 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
73567804 GTAGATTTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
27 41 0.61
28 7 0.10
29 19 0.28
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:73567887 original size:27 final size:27
Alignment explanation
Indices: 73567857--73567917 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
73567847 ACCCCTAATA
73567857 GGTAAAAAGACCGTAAAACCCTTGTAG
1 GGTAAAAAGACCGTAAAACCCTTGTAG
** * *
73567884 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAAAACCCTTGTAG
73567911 GGTAAAA
1 GGTAAAA
73567918 TAACGAATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAACCCTTGTAG
Found at i:73570692 original size:30 final size:30
Alignment explanation
Indices: 73570658--73570719 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
73570648 AACTTGTCTG
73570658 AGCAATCC-TGATATATTGTCACCTTGTGTA
1 AGCAA-CCTTGATATATTGTCACCTTGTGTA
*
73570688 AGCAACCTTGATATATTGTCAGCTTGTGTA
1 AGCAACCTTGATATATTGTCACCTTGTGTA
73570718 AG
1 AG
73570720 GAAATTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (30 bp):
AGCAACCTTGATATATTGTCACCTTGTGTA
Found at i:73576804 original size:43 final size:42
Alignment explanation
Indices: 73576750--73576906 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 42
73576740 ATATCGTACA
* * *
73576750 ATGCCAATGTCCCAGACGTGGTATTACATGTAATCACATGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AATCACATATCG
* * *
73576793 ATGCCACTGTCCCAGACAAGGTCTTACATGAATCACAATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAATCAC-ATATCG
* *
73576836 ATGCCGATGTCCCAGGCATGGTCTTAC-TCGAAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAT-G-AATCACATATCG
* * **
73576879 ATGCTAATGTCACAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
73576907 CGAGAACACA
Statistics
Matches: 93, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 7 0.08
43 80 0.86
44 6 0.06
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATATCG
Found at i:73593469 original size:14 final size:14
Alignment explanation
Indices: 73593450--73593479 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73593440 ACCCCTTCAT
*
73593450 TCCCTCATTCATCA
1 TCCCTCATCCATCA
73593464 TCCCTCATCCATCA
1 TCCCTCATCCATCA
73593478 TC
1 TC
73593480 ATTTTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:73605295 original size:17 final size:18
Alignment explanation
Indices: 73605269--73605302 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
73605259 TTTTTGTTTA
73605269 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
73605286 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
73605303 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:73608869 original size:22 final size:19
Alignment explanation
Indices: 73608844--73608891 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 19
73608834 TACTGTTTCG
73608844 ATTAAATTCTTGTCAAAAAATA
1 ATTAAATT-TT-T-AAAAAATA
*
73608866 ATT-AATTTTTATAAAATA
1 ATTAAATTTTTAAAAAATA
73608884 ATTAAATT
1 ATTAAATT
73608892 ATACTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 10 0.42
19 5 0.21
20 2 0.08
21 4 0.17
22 3 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (19 bp):
ATTAAATTTTTAAAAAATA
Found at i:73613686 original size:48 final size:48
Alignment explanation
Indices: 73613578--73613803 Score: 204
Period size: 48 Copynumber: 4.7 Consensus size: 48
73613568 GAGGGTAAAT
* * * * * *
73613578 TGCCGATGCCATGTCCCAGACTTGGTCTTACAGTGGCTCACATGTCGA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAA
* ** * * * *
73613626 GGCTAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAA
* * * *
73613674 TGCCGATACCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACAT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAA
* * * *
73613722 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCACACATA--ATG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCA-A
* * *
73613769 TGGTCGGTGCCATGTCCCAGACATGGTCTTACACT
1 T-GCCGATGCCATGTCCCAAACATGGTCTTACACT
73613804 AGCACACATA
Statistics
Matches: 147, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 145 0.99
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAA
Found at i:73623987 original size:47 final size:47
Alignment explanation
Indices: 73623823--73624032 Score: 130
Period size: 47 Copynumber: 4.5 Consensus size: 47
73623813 TGTGAGAGCT
* * * * * *
73623823 AGTGTAAGACCATGTCTAGGACATGGCATCAACATTGAGAGCAGT--GCT
1 AGTGTAAGACCATGTCTGGGACATGGCTTCGAC-TCGAGA-TA-TAAGCC
* ** * ** *
73623871 AGTGTAAGA-CATGCCTGGGACAT-GCAACAACTTCGAGACGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCTTCGAC-TCGAGATATAAGCC
* * *
73623917 AGTGTAA-AACATGTTTGGGACAT-GCGTT-GGCTACGAGATGAT-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGC-TTCGACT-CGAGAT-ATAAGCC
*
73623963 AGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGATATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCTTCGACTCGAGATATAAGCC
* *
73624010 AATGTAAGACCGTGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
73624033 CGGCATCGGC
Statistics
Matches: 131, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 54 0.41
47 59 0.45
48 14 0.11
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCTTCGACTCGAGATATAAGCC
Found at i:73629315 original size:98 final size:97
Alignment explanation
Indices: 73629157--73629337 Score: 238
Period size: 98 Copynumber: 1.9 Consensus size: 97
73629147 GGGATACGAT
* *
73629157 GCCGATGCCATGTCCCAGACATGGTATTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCACACATGGTATTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCA
73629222 GATAGATCTTACACTGACTTTCATATCTCGAG
66 GATAGATCTTACACTGACTTTCATATCTCGAG
* * * ** *
73629254 GCCGATGTCGTGTCCCACACA-GGTCTTACACTGGCTCTCATCTATCAATGTCAATGCCATGTCC
1 GCCGATGCCATGTCCCACACATGGTATTACACTGGCTAGCA-C-ATCAAAGTCAATGCCATGTCC
* * *
73629318 CAGGTAGGTTTTACACTGAC
64 CAGATAGATCTTACACTGAC
73629338 ACACAACAAG
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
96 16 0.23
97 19 0.27
98 36 0.51
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (97 bp):
GCCGATGCCATGTCCCACACATGGTATTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCA
GATAGATCTTACACTGACTTTCATATCTCGAG
Found at i:73629317 original size:49 final size:49
Alignment explanation
Indices: 73629159--73629614 Score: 173
Period size: 48 Copynumber: 9.6 Consensus size: 49
73629149 GATACGATGC
* *
73629159 CGATGCCATGTCCCAGACATGGTATTACACTGGCTAGCA-C-ATCAAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCAAAGT
* * * * * * * * *
73629207 CGATGCCATGTCCCAGATAGATCTTACACTGACTTTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAAGT
* * * * *
73629256 CGATGTCGTGTCCCACACAGGTCTTACACTGGCTCTCATCTATCAATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAAGT
* ** * * *
73629305 CAATGCCATGTCCCAGGTAGGTTTTACACTGAC-A-CA-C-AAC-AAG-
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAAGT
* * * * * * *
73629348 CTGATGCCATGTCCCAGACATGTTTTACACTAGCT-T-GTATATCTCAAGG
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-AAAGT
* * * * * *
73629397 CTGATG-CATGTCCCAAACATGTCTTACACTAGCTCTCGTCT-T-AATGT
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAAGT
* * * * * * *
73629444 CGATG-CATGTCCCAAACATGTCTTACACTAGCT-T-GTATATCTCAAGG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-AAAGT
* * * * * * *
73629491 CTGATG-CATGTCCCAAACATGTCTTACACTAGCT-T-GTATATCTCAAGG
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-AAAGT
* * * * * *
73629539 CTGATG-CATGTCCCAGACATGTCTTACACTGGCT-TGTATATCTCAAGGC
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTAT-CATCTATCAAAGT
*
73629588 CGATG-CATGTCCCAGACATGTCTTACA
1 CGATGCCATGTCCCAGACAGGTCTTACA
73629615 TTAGCACACA
Statistics
Matches: 330, Mismatches: 60, Indels: 36
0.77 0.14 0.08
Matches are distributed among these distances:
43 1 0.00
44 31 0.09
45 4 0.01
46 35 0.11
47 22 0.07
48 152 0.46
49 77 0.23
50 8 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAAGT
Found at i:73629390 original size:142 final size:140
Alignment explanation
Indices: 73629192--73629572 Score: 397
Period size: 142 Copynumber: 2.7 Consensus size: 140
73629182 ATTACACTGG
* *
73629192 CTAGC-ACATCA-AAGTC-GATGCCATGTCCCAGATA-GATCTTACACT-GACTT-TCATATCTC
1 CTAGCTACATCACAAGGCTGATGCCATGTCCCAGACATG-TCTTACACTAG-CTTGT-ATATCTC
* * * * *
73629251 GAGGCCGATGTCGTGTCCCACACAGGTCTTACACTGGCTCTCATCTATCAATGTCAATGCCATGT
63 AAGGCTGATG-CATGTCCCAAACATGTCTTACACTGGCTCTCATCT-T-AATGTCAATG-CATGT
*** *
73629316 CCCAGGTAGGTTTTACA
124 CCCAAACAGGTCTTACA
*
73629333 CT-GAC-ACA-CAACAA-GCTGATGCCATGTCCCAGACATGTTTTACACTAGCTTGTATATCTCA
1 CTAG-CTACATC-ACAAGGCTGATGCCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCA
* * *
73629394 AGGCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAATGTCGATGCATGTCCCAA
64 AGGCTGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCTTAATGTCAATGCATGTCCCAA
*
73629459 ACATGTCTTACA
129 ACAGGTCTTACA
* * *
73629471 CTAGCTTGTATATCTCAAGGCTGATG-CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTC
1 CTAGC---TACATCACAAGGCTGATGCCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTC
*
73629535 AAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCT
63 AAGGCTGATGCATGTCCCAAACATGTCTTACACTGGCT
73629573 TGTATATCTC
Statistics
Matches: 204, Mismatches: 22, Indels: 27
0.81 0.09 0.11
Matches are distributed among these distances:
138 20 0.10
139 10 0.05
140 3 0.01
141 38 0.19
142 122 0.60
143 11 0.05
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (140 bp):
CTAGCTACATCACAAGGCTGATGCCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAG
GCTGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCTTAATGTCAATGCATGTCCCAAAC
AGGTCTTACA
Found at i:73629628 original size:48 final size:48
Alignment explanation
Indices: 73629347--73629619 Score: 399
Period size: 48 Copynumber: 5.7 Consensus size: 48
73629337 CACACAACAA
* *
73629347 GCTGATGCCATGTCCCAGACATGTTTTACACTAGCTTGTATATCTCAAG
1 GCTGATG-CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCAAG
* ** * *
73629396 GCTGATGCATGTCCCAAACATGTCTTACACTAGC-TCT-CGTCTTAAT
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCAAG
73629442 G-TCGATGCATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCAAG
1 GCT-GATGCATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCAAG
73629490 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCAAG
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCAAG
* *
73629538 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCAAG
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCAAG
* * *
73629586 GCCGATGCATGTCCCAGACATGTCTTACATTAGC
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGC
73629620 ACACATATCA
Statistics
Matches: 203, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
45 1 0.00
46 37 0.18
47 4 0.02
48 153 0.75
49 8 0.04
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (48 bp):
GCTGATGCATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCAAG
Found at i:73630290 original size:20 final size:21
Alignment explanation
Indices: 73630265--73630304 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
73630255 ACAGTTTCAA
*
73630265 TTATTTCACACA-TTTACAAC
1 TTATTTCACAAACTTTACAAC
*
73630285 TTATTTTACAAACTTTACAA
1 TTATTTCACAAACTTTACAA
73630305 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (21 bp):
TTATTTCACAAACTTTACAAC
Found at i:73633625 original size:39 final size:39
Alignment explanation
Indices: 73633575--73633706 Score: 115
Period size: 47 Copynumber: 3.2 Consensus size: 39
73633565 AAAAATTATA
* *
73633575 TTTAATACAATAAAATATT-TCTAATATTTAT-TTGTGTTT
1 TTTAATACAATAAAAAATTAT-T-ATATTTATGTAGTGTTT
*
73633614 TTTAATGCAATAAAAAATTATTATATTTATGGTAGTGTTT
1 TTTAATACAATAAAAAATTATTATATTTAT-GTAGTGTTT
*
73633654 TTTAATATAAACACTTACAAAAAATTATTATATTTATGGTAGTGTTT
1 TTT-A-AT--ACA---ATAAAAAATTATTATATTTAT-GTAGTGTTT
73633701 TTTAAT
1 TTTAAT
73633707 TTAAACACTT
Statistics
Matches: 78, Mismatches: 5, Indels: 14
0.80 0.05 0.14
Matches are distributed among these distances:
38 8 0.10
39 18 0.23
40 11 0.14
41 1 0.01
42 2 0.03
44 2 0.03
45 2 0.03
46 1 0.01
47 33 0.42
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (39 bp):
TTTAATACAATAAAAAATTATTATATTTATGTAGTGTTT
Found at i:73633676 original size:47 final size:47
Alignment explanation
Indices: 73633625--73633716 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
73633615 TTAATGCAAT
73633625 AAAAAATTATTATATTTATGGTAGTGTTTTTTAATATAAACACTTAC
1 AAAAAATTATTATATTTATGGTAGTGTTTTTTAATATAAACACTTAC
*
73633672 AAAAAATTATTATATTTATGGTAGTGTTTTTTAATTTAAACACTT
1 AAAAAATTATTATATTTATGGTAGTGTTTTTTAATATAAACACTT
73633717 TTTATTTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (47 bp):
AAAAAATTATTATATTTATGGTAGTGTTTTTTAATATAAACACTTAC
Found at i:73634194 original size:20 final size:19
Alignment explanation
Indices: 73634169--73634219 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
73634159 ATTCCTATTC
*
73634169 TATTTAATTT-CTATTTAA
1 TATTTAATTTAATATTTAA
73634187 TTTATTT-ATTTAATATTTAA
1 --TATTTAATTTAATATTTAA
73634207 TATTTAATTTAAT
1 TATTTAATTTAAT
73634220 TAAATAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 5 0.18
19 11 0.39
20 12 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTTAATTTAATATTTAA
Found at i:73635857 original size:23 final size:22
Alignment explanation
Indices: 73635815--73635856 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
73635805 TGTTTAGTAA
73635815 AAGGAAAAACTTGGATTTTTAT
1 AAGGAAAAACTTGGATTTTTAT
73635837 AAGGAAAAAACTT-GATTTTT
1 AAGG-AAAAACTTGGATTTTT
73635857 TTTTACTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.36
Consensus pattern (22 bp):
AAGGAAAAACTTGGATTTTTAT
Found at i:73639199 original size:15 final size:17
Alignment explanation
Indices: 73639169--73639200 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
73639159 TTGATACTAG
73639169 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
73639186 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
73639201 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:73640285 original size:32 final size:32
Alignment explanation
Indices: 73640219--73640301 Score: 100
Period size: 32 Copynumber: 2.7 Consensus size: 32
73640209 AAATTATATT
* *
73640219 TATTTCATTTTAAATTATA--TTACATTAAAA
1 TATTTAATTTTAAATTATATTTTACAATAAAA
73640249 TATTTAATTTTAAATTATATTTTGA-AATAAAA
1 TATTTAATTTTAAATTATATTTT-ACAATAAAA
* *
73640281 TATTTTATATTAAATTATATT
1 TATTTAATTTTAAATTATATT
73640302 AAAATATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
30 18 0.39
32 27 0.59
33 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.53
Consensus pattern (32 bp):
TATTTAATTTTAAATTATATTTTACAATAAAA
Found at i:73647048 original size:43 final size:43
Alignment explanation
Indices: 73647001--73647087 Score: 117
Period size: 43 Copynumber: 2.0 Consensus size: 43
73646991 ATTTGTGATT
*
73647001 TCGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATGTGGTTAC-ATGTAAGACCAC-GTCTGGGAC-GTTGGCA
73647044 TCGATATGTGGTTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGGTTACATGTAAGACCACGTCTGGGACGTTGGCA
73647087 T
1 T
73647088 TGTAAGGTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 2 0.05
43 37 0.93
44 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (43 bp):
TCGATATGTGGTTACATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:73649629 original size:30 final size:30
Alignment explanation
Indices: 73649595--73649668 Score: 139
Period size: 30 Copynumber: 2.5 Consensus size: 30
73649585 CACAGCTATG
73649595 CACACGAGCGTGTGACTAGGCCGTGTGGGC
1 CACACGAGCGTGTGACTAGGCCGTGTGGGC
73649625 CACACGAGCGTGTGACTAGGCCGTGTGGGC
1 CACACGAGCGTGTGACTAGGCCGTGTGGGC
*
73649655 CACACGAGCATGTG
1 CACACGAGCGTGTG
73649669 GCAGGCCATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.19, C:0.27, G:0.38, T:0.16
Consensus pattern (30 bp):
CACACGAGCGTGTGACTAGGCCGTGTGGGC
Found at i:73649856 original size:62 final size:61
Alignment explanation
Indices: 73649775--73649948 Score: 204
Period size: 62 Copynumber: 2.8 Consensus size: 61
73649765 TCACATGGCC
* * *
73649775 AGGGACACAGGAGTGTGCCCAGGCTGTGTAAATCACTGTTTATGCTTAAAAACCACACGACT
1 AGGGACACAGCA-TGTGCCCAGGCCGTGTAAATCATTGTTTATGCTTAAAAACCACACGACT
* * * * *
73649837 AGGGACACGAGCATGTGCCCAAGCCGTGTAACTCATTGTTTTTGCTTAAAAACCATACGGCT
1 AGGGACAC-AGCATGTGCCCAGGCCGTGTAAATCATTGTTTATGCTTAAAAACCACACGACT
* * * * *
73649899 AGGGACATAGGCGTGTGCCCAGGCCATGTAATTCATTGTTTGTGCTTAAA
1 AGGGACACA-GCATGTGCCCAGGCCGTGTAAATCATTGTTTATGCTTAAA
73649949 GATCACATGC
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
61 1 0.01
62 92 0.96
63 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (61 bp):
AGGGACACAGCATGTGCCCAGGCCGTGTAAATCATTGTTTATGCTTAAAAACCACACGACT
Found at i:73651117 original size:6 final size:6
Alignment explanation
Indices: 73651106--73651138 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
73651096 AGGTTTCCAA
*
73651106 AAATGG AAATGG AAATGA AAATGG AAATGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAA
73651139 CTTGCAATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.15
Consensus pattern (6 bp):
AAATGG
Found at i:73655651 original size:25 final size:25
Alignment explanation
Indices: 73655622--73655671 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
73655612 TAAGAGTTAG
73655622 TGAACATAGGCTCTAATACCACCAA
1 TGAACATAGGCTCTAATACCACCAA
73655647 TGAACATAGGCTCTAATACCACCAA
1 TGAACATAGGCTCTAATACCACCAA
73655672 AATGTAACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.20
Consensus pattern (25 bp):
TGAACATAGGCTCTAATACCACCAA
Found at i:73656763 original size:39 final size:40
Alignment explanation
Indices: 73656706--73656784 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 40
73656696 ATTTACATGG
* * * *
73656706 TAATCACATCCACTTTTAATCATAAATCACATTACACATA
1 TAATCACATCAACATTTAAGCATAAATCACAATACACATA
* *
73656746 TAATCACAT-AACATTTAAGCATATATCACAATACTCATA
1 TAATCACATCAACATTTAAGCATAAATCACAATACACATA
73656785 AATATATTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
39 24 0.73
40 9 0.27
ACGTcount: A:0.44, C:0.23, G:0.01, T:0.32
Consensus pattern (40 bp):
TAATCACATCAACATTTAAGCATAAATCACAATACACATA
Found at i:73657768 original size:7 final size:7
Alignment explanation
Indices: 73657756--73657782 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
73657746 TTTAAGGAAA
73657756 AATTTTG
1 AATTTTG
73657763 AATTTTG
1 AATTTTG
73657770 AATTTTG
1 AATTTTG
73657777 AATTTT
1 AATTTT
73657783 ATGAAATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (7 bp):
AATTTTG
Found at i:73658508 original size:55 final size:55
Alignment explanation
Indices: 73658449--73658552 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
73658439 TGACTTTTTA
* * *
73658449 ACACGTCCATGGCACACACCCATGTGGCCTAC-CTGTGTTCAATACTGACTTTAGG
1 ACACGGCCAAGGCACACACCCATGTGGCCTACTC-ATGTTCAATACTGACTTTAGG
* * *
73658504 ACACGGCCAAGGCACACGCCTATGTGGCCTACTCATGTTCAATATTGAC
1 ACACGGCCAAGGCACACACCCATGTGGCCTACTCATGTTCAATACTGAC
73658553 CTAAAATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 41 0.98
56 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (55 bp):
ACACGGCCAAGGCACACACCCATGTGGCCTACTCATGTTCAATACTGACTTTAGG
Found at i:73666142 original size:55 final size:55
Alignment explanation
Indices: 73666073--73666176 Score: 145
Period size: 55 Copynumber: 1.9 Consensus size: 55
73666063 CTACTTTTTA
* * *
73666073 ACACGTCCATGGCACACACCCGTGTGGCCTACCCGTGTTCAATACTGACTTTAGG
1 ACACGGCCAAGGCACACACCCGTGTGGCCTACCCATGTTCAATACTGACTTTAGG
* * * *
73666128 ACACGGCCAAGGCACACGCCCGTGTGGCCTGCTCATGTTCAATATTGAC
1 ACACGGCCAAGGCACACACCCGTGTGGCCTACCCATGTTCAATACTGAC
73666177 CTAAAATTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (55 bp):
ACACGGCCAAGGCACACACCCGTGTGGCCTACCCATGTTCAATACTGACTTTAGG
Found at i:73669004 original size:28 final size:27
Alignment explanation
Indices: 73668959--73669011 Score: 97
Period size: 28 Copynumber: 1.9 Consensus size: 27
73668949 AAGGACCTCC
73668959 ACTTTAAAACCCATTACTCACAAGTCG
1 ACTTTAAAACCCATTACTCACAAGTCG
73668986 ACTTTAAAATCCCATTACTCACAAGT
1 ACTTTAAAA-CCCATTACTCACAAGT
73669012 ACTTAGTACC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 9 0.36
28 16 0.64
ACGTcount: A:0.38, C:0.28, G:0.06, T:0.28
Consensus pattern (27 bp):
ACTTTAAAACCCATTACTCACAAGTCG
Found at i:73678153 original size:27 final size:27
Alignment explanation
Indices: 73678122--73678299 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73678112 TAAATTGTAC
73678122 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73678149 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73678175 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73678203 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73678231 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73678258 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73678285 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73678300 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73678236 original size:82 final size:81
Alignment explanation
Indices: 73678123--73678278 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73678113 AAATTGTACA
* *
73678123 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73678187 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73678204 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73678269 TGCGAGTTGA
65 TGCGAATTGA
73678279 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73678290 original size:82 final size:81
Alignment explanation
Indices: 73678119--73678299 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73678109 GATTAAATTG
* *
73678119 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73678184 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73678200 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73678264 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73678282 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73678300 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73681688 original size:24 final size:24
Alignment explanation
Indices: 73681647--73681698 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
73681637 CACAAACACA
*
73681647 GCTCTTCATGAGTGTCCTGATATAG
1 GCTCTTCATGAGTGTCCTGACAT-G
73681672 GCTCTT-ATGAGCT-TCCTGACATG
1 GCTCTTCATGAG-TGTCCTGACATG
73681695 GCTC
1 GCTC
73681699 ACTTGAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 5 0.20
24 13 0.52
25 7 0.28
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (24 bp):
GCTCTTCATGAGTGTCCTGACATG
Found at i:73684056 original size:85 final size:85
Alignment explanation
Indices: 73683913--73684089 Score: 291
Period size: 85 Copynumber: 2.1 Consensus size: 85
73683903 GAGAAAGCTT
* ** *
73683913 ACACTCAGAATTTAGAGTAGGGGATTAGGCTACTACTAAATTACCAATTAACATATTGAATCGTG
1 ACACTCAAAATTTAGAGTAGAAGATTAGGCTACTACTAAATTACCAATTAACACATTGAATCGTG
*
73683978 TCCACAAGTAGCTATTCTAA
66 TCCACAAGCAGCTATTCTAA
*
73683998 ACACTCAAAATTTAGAGTAGAAGTTTAGGCTACTACTAAATTACCAATTAACACATTGAATCGTG
1 ACACTCAAAATTTAGAGTAGAAGATTAGGCTACTACTAAATTACCAATTAACACATTGAATCGTG
*
73684063 TCTACAAGCAGCTATTCTAA
66 TCCACAAGCAGCTATTCTAA
73684083 ACACTCA
1 ACACTCA
73684090 CCAATACGCT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (85 bp):
ACACTCAAAATTTAGAGTAGAAGATTAGGCTACTACTAAATTACCAATTAACACATTGAATCGTG
TCCACAAGCAGCTATTCTAA
Found at i:73694713 original size:26 final size:26
Alignment explanation
Indices: 73694635--73694764 Score: 176
Period size: 26 Copynumber: 5.1 Consensus size: 26
73694625 GCCTAGCCTC
*
73694635 TTTCAAT-AACTGGGACA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
** *
73694659 TTTCGGTAAACTGGGGCA-AAGCCCA
1 TTTCAATAAACTGGGGCATAAGCCCT
73694684 TTTCAATAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
**
73694710 TTTCGGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
73694736 TTTCAATAAACTAGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
73694762 TTT
1 TTT
73694765 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
24 5 0.05
25 31 0.34
26 56 0.61
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
TTTCAATAAACTGGGGCATAAGCCCT
Found at i:73694755 original size:52 final size:50
Alignment explanation
Indices: 73694635--73694764 Score: 201
Period size: 52 Copynumber: 2.6 Consensus size: 50
73694625 GCCTAGCCTC
73694635 TTTCAAT-AACTGGGACA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCA
1 TTTCAATAAACTGGG-CATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCA
*
73694684 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACT-GGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCA
73694736 TTTCAATAAACTAGGGCATAAGCCCTTTT
1 TTTCAATAAACT-GGGCATAAGCCCTTTT
73694765 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
49 7 0.09
50 6 0.08
51 28 0.37
52 34 0.45
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (50 bp):
TTTCAATAAACTGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCA
Found at i:73694842 original size:20 final size:20
Alignment explanation
Indices: 73694814--73694870 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
73694804 TTATGAATTC
*
73694814 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
73694834 ATGATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73694854 GTCATGTGCATATCATA
1 ATCATGTGCATATCATA
73694871 TCAAACATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73694879 original size:20 final size:20
Alignment explanation
Indices: 73694816--73694880 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
73694806 ATGAATTCAT
* *
73694816 CATGTGCATTTCATACATAT
1 CATGTGCATATCATACATAA
* **
73694836 GATGTGCATATCATACATGT
1 CATGTGCATATCATACATAA
73694856 CATGTGCATATCATATCA-AA
1 CATGTGCATATCATA-CATAA
73694876 CATGT
1 CATGT
73694881 ATACCATATC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 36 0.95
21 2 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTGCATATCATACATAA
Found at i:73694944 original size:25 final size:25
Alignment explanation
Indices: 73694916--73694963 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73694906 ATAATTAAAC
* * *
73694916 CCTAGGGGTATAATCGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
73694941 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
73694964 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:73701111 original size:28 final size:28
Alignment explanation
Indices: 73701049--73701145 Score: 133
Period size: 28 Copynumber: 3.5 Consensus size: 28
73701039 TATTAAGTCT
*
73701049 GCACACTCAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTATATAATCAAACTC
73701076 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* * * *
73701104 GCACACTTAGTGCTGTACAATTTAAACCC
1 GCACACTTAGTGCTATATAA-TCAAACTC
73701133 GCACACTTAGTGC
1 GCACACTTAGTGC
73701146 CAATCTCATG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.37
29 19 0.30
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:73706061 original size:26 final size:26
Alignment explanation
Indices: 73705977--73706158 Score: 271
Period size: 26 Copynumber: 7.1 Consensus size: 26
73705967 GCCTAGCCTC
73705977 TTTCAAT-AACTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
**
73706001 TTTCGGTAAACTGGGGCAT-AGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
73706026 TTTCAATAAACTAGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
**
73706052 TTTCGGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
73706078 TTTCAATAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
* *
73706104 TTTTAATAAACTGAGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
73706130 TTTTAATAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
73706156 TTT
1 TTT
73706159 GCACTTCCTC
Statistics
Matches: 142, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
24 5 0.04
25 32 0.23
26 105 0.74
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
TTTCAATAAACTGGGGCATAAGCCCT
Found at i:73706254 original size:20 final size:20
Alignment explanation
Indices: 73706207--73706264 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
73706197 TTTATGAATT
*
73706207 CATCATGTGCATTTCATACA
1 CATCATGTGCATATCATACA
*
73706227 CATGATGTGCATATCATACA
1 CATCATGTGCATATCATACA
**
73706247 TGTCATGTGCATATCATA
1 CATCATGTGCATATCATA
73706265 TCAAACATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (20 bp):
CATCATGTGCATATCATACA
Found at i:73706273 original size:20 final size:20
Alignment explanation
Indices: 73706210--73706274 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
73706200 ATGAATTCAT
* * *
73706210 CATGTGCATTTCATACACAT
1 CATGTGCATATCATACATAA
* **
73706230 GATGTGCATATCATACATGT
1 CATGTGCATATCATACATAA
73706250 CATGTGCATATCATATCA-AA
1 CATGTGCATATCATA-CATAA
73706270 CATGT
1 CATGT
73706275 ATACCATATC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
20 35 0.95
21 2 0.05
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAA
Found at i:73708141 original size:15 final size:15
Alignment explanation
Indices: 73708123--73708162 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
73708113 TTCGATTAAT
73708123 AGGTGTAGGATTGGC
1 AGGTGTAGGATTGGC
* *
73708138 AGGTGCAGGATTGGT
1 AGGTGTAGGATTGGC
73708153 AGGTGTAGGA
1 AGGTGTAGGA
73708163 ACAGGGTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.23, C:0.05, G:0.47, T:0.25
Consensus pattern (15 bp):
AGGTGTAGGATTGGC
Found at i:73709676 original size:39 final size:40
Alignment explanation
Indices: 73709619--73709697 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 40
73709609 ATTTACATGG
* * *
73709619 TAATCACATTCACTTTTAAGCATATATCACATTACACATA
1 TAATCACATTAACATTTAAGCATATATCACAATACACATA
*
73709659 TAATCACA-TAACATTTAAGCATATATCACAATACTCATA
1 TAATCACATTAACATTTAAGCATATATCACAATACACATA
73709698 AACATATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 27 0.77
40 8 0.23
ACGTcount: A:0.43, C:0.22, G:0.03, T:0.33
Consensus pattern (40 bp):
TAATCACATTAACATTTAAGCATATATCACAATACACATA
Found at i:73720068 original size:21 final size:20
Alignment explanation
Indices: 73720034--73720083 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
73720024 CAATGAGATG
73720034 GTTGAAAATTCACCAAATTA
1 GTTGAAAATTCACCAAATTA
* *
73720054 GTTGAATACTTCACCAAGTTA
1 GTTGAA-AATTCACCAAATTA
*
73720075 GTTCAAAAT
1 GTTGAAAAT
73720084 GAAGATGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (20 bp):
GTTGAAAATTCACCAAATTA
Found at i:73734699 original size:16 final size:16
Alignment explanation
Indices: 73734668--73734705 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
73734658 TCTACCATTC
73734668 CTTTTT-GTTATTTTT
1 CTTTTTGGTTATTTTT
73734683 CTTTTTGGTT-TTGTTT
1 CTTTTTGGTTATT-TTT
73734699 CTTTTTG
1 CTTTTTG
73734706 TACTGTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.03, C:0.08, G:0.13, T:0.76
Consensus pattern (16 bp):
CTTTTTGGTTATTTTT
Found at i:73740318 original size:46 final size:46
Alignment explanation
Indices: 73740251--73740428 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
73740241 TGTAACCCGC
* * *
73740251 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
**
73740297 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTACTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG--T--TCGCAT
* * * **
73740347 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
73740390 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
73740429 CCCAAACATC
Statistics
Matches: 109, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 3 0.03
46 65 0.60
47 28 0.26
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:73740387 original size:93 final size:93
Alignment explanation
Indices: 73740259--73740430 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
73740249 GCCCATAAGT
* ***
73740259 GAACTCAGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
73740324 CGAGTTCGGATGCCTACTTACATCTCAC
66 CGAGTTCGGATGCCTACTTACATCTCAC
* * *
73740352 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
73740417 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
73740431 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTACTTACATCTCAC
Found at i:73742831 original size:14 final size:15
Alignment explanation
Indices: 73742800--73742832 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
73742790 TAGAGAATAA
73742800 AAAGAAAGATGAACG
1 AAAGAAAGATGAACG
*
73742815 AAAGAAA-ATGAAGG
1 AAAGAAAGATGAACG
73742829 AAAG
1 AAAG
73742833 GGAAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.64, C:0.03, G:0.27, T:0.06
Consensus pattern (15 bp):
AAAGAAAGATGAACG
Found at i:73744844 original size:20 final size:20
Alignment explanation
Indices: 73744819--73744857 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
73744809 GACATGTTAG
73744819 TCATTAACCATGACAAAAAC
1 TCATTAACCATGACAAAAAC
73744839 TCATTAACCATGACAAAAA
1 TCATTAACCATGACAAAAA
73744858 GCCCTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.23, G:0.05, T:0.21
Consensus pattern (20 bp):
TCATTAACCATGACAAAAAC
Found at i:73748152 original size:21 final size:21
Alignment explanation
Indices: 73748126--73748179 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
73748116 TCATTTTCAG
**
73748126 CAACTTCTTCTTCTTTAGCAA
1 CAACTTCTTCTTCTGCAGCAA
*
73748147 CAACTTCCTCTTCTGCAGCAA
1 CAACTTCTTCTTCTGCAGCAA
73748168 CAACTTCCTTCT
1 CAACTT-CTTCT
73748180 CAACAACAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.22, C:0.35, G:0.06, T:0.37
Consensus pattern (21 bp):
CAACTTCTTCTTCTGCAGCAA
Found at i:73748153 original size:18 final size:20
Alignment explanation
Indices: 73748126--73748187 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
73748116 TCATTTTCAG
*
73748126 CAACTTCTTCTTCTTTAGCAA
1 CAACTTCTTCTTC-TCAGCAA
*
73748147 CAACTTCCTCTTCTGCAGCAA
1 CAACTTCTTCTTCT-CAGCAA
*
73748168 CAACTTC--CTTCTCAACAA
1 CAACTTCTTCTTCTCAGCAA
73748186 CA
1 CA
73748188 GTGCCCTTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 7 0.19
19 5 0.14
20 1 0.03
21 24 0.65
ACGTcount: A:0.27, C:0.35, G:0.05, T:0.32
Consensus pattern (20 bp):
CAACTTCTTCTTCTCAGCAA
Found at i:73756101 original size:45 final size:45
Alignment explanation
Indices: 73756034--73756285 Score: 398
Period size: 45 Copynumber: 5.6 Consensus size: 45
73756024 TATTGTACAG
73756034 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* ** *
73756079 TATTATTCGGGCCTTTGAGCCTAGCAGGCTAGGATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
73756124 TACTATTCGGGCCTTTGAGCCTAGCAAGCAATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
73756169 TATTATTCAGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
73756214 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
73756259 TACTATTCGGGCC-TCGAGCCTAGCAGG
1 TACTATTCGGGCCTTTGAGCCTAGCAGG
73756286 TGAAATGCCA
Statistics
Matches: 186, Mismatches: 21, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
44 13 0.07
45 173 0.93
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:73758153 original size:41 final size:40
Alignment explanation
Indices: 73758056--73758193 Score: 131
Period size: 40 Copynumber: 3.4 Consensus size: 40
73758046 TTTCAAATCT
* * * * *
73758056 TGAAAAGGTTGAAAAGGAGGTTACCTTAAAGGGATAAT-AGA
1 TGAAAAGGTTGAAAAGG-GATTATCTAAAAAGGAT-ATCAAA
*
73758097 TGAAAAAGTTG-AAAGGGATATATCTAAAAAGGATATCAAA
1 TGAAAAGGTTGAAAAGGGAT-TATCTAAAAAGGATATCAAA
*
73758137 TGAAAAGGTTGAAAA-GGACGTTATCTGAAAAGGATATC-AA
1 TGAAAAGGTTGAAAAGGGA--TTATCTAAAAAGGATATCAAA
*
73758177 TGAAAAGGTCGAAAAGG
1 TGAAAAGGTTGAAAAGG
73758194 AAATCAATGA
Statistics
Matches: 82, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
39 4 0.05
40 47 0.57
41 30 0.37
42 1 0.01
ACGTcount: A:0.47, C:0.06, G:0.26, T:0.21
Consensus pattern (40 bp):
TGAAAAGGTTGAAAAGGGATTATCTAAAAAGGATATCAAA
Found at i:73758199 original size:24 final size:24
Alignment explanation
Indices: 73758163--73758233 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
73758153 GACGTTATCT
73758163 GAAAAGGATATCAATGAAAAGGTC
1 GAAAAGGATATCAATGAAAAGGTC
* *
73758187 GAAAAGGAAATCAATGAACAGGTC
1 GAAAAGGATATCAATGAAAAGGTC
* *
73758211 AAAAAGGATAGCAATGAAAAGGT
1 GAAAAGGATATCAATGAAAAGGT
73758234 TGATATTTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.52, C:0.08, G:0.25, T:0.14
Consensus pattern (24 bp):
GAAAAGGATATCAATGAAAAGGTC
Found at i:73776365 original size:21 final size:21
Alignment explanation
Indices: 73776339--73776398 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 21
73776329 AGCTTGTTTG
73776339 GAACATCTTAAAAAAATAAAA
1 GAACATCTTAAAAAAATAAAA
73776360 GAACATCTT---AAAATAAAA
1 GAACATCTTAAAAAAATAAAA
73776378 GAACATCTTAAAAAAAATAAA
1 GAACATCTT-AAAAAAATAAA
73776399 CTCCTTTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
18 18 0.51
21 9 0.26
22 8 0.23
ACGTcount: A:0.65, C:0.10, G:0.05, T:0.20
Consensus pattern (21 bp):
GAACATCTTAAAAAAATAAAA
Found at i:73779355 original size:27 final size:28
Alignment explanation
Indices: 73779251--73779360 Score: 127
Period size: 28 Copynumber: 3.9 Consensus size: 28
73779241 AGGAAGCGTC
*
73779251 CTGGTGGCTATGCCACAAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATTATCTGTAT
73779279 CTGGTGGCTCTGCCACATATATATCTGT-T
1 CTGGTGGCTCTGCCACA-AT-TATCTGTAT
*
73779308 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
* * *
73779336 CTGGTGACCCTGTCAC-ATTATCTGT
1 CTGGTGGCTCTGCCACAATTATCTGT
73779361 TCTAGCAGCC
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
27 17 0.23
28 33 0.45
29 23 0.32
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:73787145 original size:29 final size:28
Alignment explanation
Indices: 73787083--73787169 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 28
73787073 TAGTGACGTC
*
73787083 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
*
73787111 CTGGTGGCTCTGCCACATATATATCT-ATT
1 CTGGTGGCTCTGCCACAAAT-TATCTGA-T
* *
73787140 CTGGTGGCTCTACCAC-GATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTG-AT
73787168 CT
1 CT
73787170 AGTGACCCTG
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.10
28 24 0.47
29 22 0.43
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:73788202 original size:29 final size:29
Alignment explanation
Indices: 73788160--73788236 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
73788150 AATTATTTTC
* * *
73788160 ATATGGCTCATTAGGCCCAAATCACCTCT
1 ATATGGCCCGTTAGGCCCAAATCACATCT
* * *
73788189 ATGTGGCCCGTTAGGCTCAAATCACATTT
1 ATATGGCCCGTTAGGCCCAAATCACATCT
*
73788218 ATATGGCCCGTTTGGCCCA
1 ATATGGCCCGTTAGGCCCA
73788237 GTCACATTAA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (29 bp):
ATATGGCCCGTTAGGCCCAAATCACATCT
Found at i:73788249 original size:28 final size:29
Alignment explanation
Indices: 73788160--73788249 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 29
73788150 AATTATTTTC
* * * *
73788160 ATATGGCTCATTAGGCCCAAATCACCTCT-
1 ATATGGCCCGTTAGGCTCAAATCACAT-TA
* *
73788189 ATGTGGCCCGTTAGGCTCAAATCACATTT
1 ATATGGCCCGTTAGGCTCAAATCACATTA
* * *
73788218 ATATGGCCCGTTTGGC-CCAGTCACATTA
1 ATATGGCCCGTTAGGCTCAAATCACATTA
73788246 ATAT
1 ATAT
73788250 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
28 14 0.28
29 36 0.72
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (29 bp):
ATATGGCCCGTTAGGCTCAAATCACATTA
Found at i:73789683 original size:16 final size:16
Alignment explanation
Indices: 73789659--73789690 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73789649 AAGTTCGAGA
*
73789659 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
73789675 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
73789691 GCGTTACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:73795211 original size:19 final size:19
Alignment explanation
Indices: 73795189--73795227 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
73795179 AGAAGCTACG
*
73795189 TGGGAGCCTGAGGATGCTA
1 TGGGAGCCCGAGGATGCTA
73795208 TGGGAGCCCGAGGATGCTA
1 TGGGAGCCCGAGGATGCTA
73795227 T
1 T
73795228 AAGAAAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.41, T:0.21
Consensus pattern (19 bp):
TGGGAGCCCGAGGATGCTA
Found at i:73809742 original size:22 final size:22
Alignment explanation
Indices: 73809693--73809742 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
73809683 CAGATTTGCC
*
73809693 CACA-ATATACATATTCATGCA
1 CACATATACACATATTCATGCA
*
73809714 CATATATACACATATTCATGCA
1 CACATATACACATATTCATGCA
*
73809736 TACATAT
1 CACATAT
73809743 CATTACATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.42, C:0.22, G:0.04, T:0.32
Consensus pattern (22 bp):
CACATATACACATATTCATGCA
Found at i:73814439 original size:47 final size:45
Alignment explanation
Indices: 73814331--73814549 Score: 160
Period size: 47 Copynumber: 4.8 Consensus size: 45
73814321 GTGTATAAGT
* ** * * *
73814331 GCTGATGCATGTCCCAAACATGTCTTAAACTAGCACGAAGCTTAG
1 GCTGATGCATGTCCCAGACACATCTTACACTAGCACGCATCTTAG
*
73814376 GC-GATGCATGTTCCAGACACATCTTACACTAGCTAC-CATCATTGAG
1 GCTGATGCATGTCCCAGACACATCTTACACTAGC-ACGCATC-TT-AG
* * * * *
73814422 GCTGATGCATGTCCCAGACACGTTTTACACTGGCACTCATCTCTAC
1 GCTGATGCATGTCCCAGACACATCTTACACTAGCACGCATCT-TAG
** * * *
73814468 G-TCGATGCCATGTCCCAGACATGTTCTTACACTGGCTATCGTAAT-GT-G
1 GCT-GATG-CATGTCCCAGACA-CATCTTACACTAGC-A-CG-CATCTTAG
73814516 GCTGATGCATGTCCCAGACACATCTTACACTAGC
1 GCTGATGCATGTCCCAGACACATCTTACACTAGC
73814550 CCTCGTCTCA
Statistics
Matches: 139, Mismatches: 22, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
44 28 0.20
45 7 0.05
46 24 0.17
47 58 0.42
48 16 0.12
49 3 0.02
50 1 0.01
51 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (45 bp):
GCTGATGCATGTCCCAGACACATCTTACACTAGCACGCATCTTAG
Found at i:73814519 original size:94 final size:93
Alignment explanation
Indices: 73814285--73814594 Score: 313
Period size: 94 Copynumber: 3.3 Consensus size: 93
73814275 ATCGAGGCCA
* * *
73814285 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGT-GCTGATGCATGTCCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATC--GTA-ATGTGGCTGATGCATGTCCCAGA
* * ** * *
73814349 CATGTCTTAAACTAGCACGAAGCT-TAGGCG
63 CACGTCTTACACTAGCACTCATCTCTAGCCG
* ** * * * *
73814379 ATG-CATGTTCCAGACA-CATCTTACACTAGCTACCATCATTGAGGCTGATGCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGT-AATGTGGCTGATGCATGTCCCAGACA
* * *
73814442 CGTTTTACACTGGCACTCATCTCTACGTCG
65 CGTCTTACACTAGCACTCATCTCTA-GCCG
* *
73814472 ATGCCATGTCCCAGACATGTTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTAATGTGGCTGATGCATGTCCCAGACAC
* * * *
73814537 ATCTTACACTAGCCCTCGTCTCAATGCCG
66 GTCTTACACTAGCACTCATCTCTA-GCCG
73814566 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
73814595 GGCTCTCACA
Statistics
Matches: 175, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
90 2 0.01
91 35 0.20
92 16 0.09
93 18 0.10
94 89 0.51
95 15 0.09
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTAATGTGGCTGATGCATGTCCCAGACAC
GTCTTACACTAGCACTCATCTCTAGCCG
Found at i:73814574 original size:47 final size:44
Alignment explanation
Indices: 73814377--73814582 Score: 117
Period size: 47 Copynumber: 4.4 Consensus size: 44
73814367 GAAGCTTAGG
* * *
73814377 CGATGCATGTTCCAGACACATCTTACACTAGCTACCATCATTGAGGC
1 CGATGCATGTCCCAGACACATCTTACACTAGC--CC-TCATTAATGC
* * * * * * * *
73814424 TGATGCATGTCCCAGACACGTTTTACACTGGCACTCATCTCTACGT
1 CGATGCATGTCCCAGACACATCTTACACTAGCCCTCAT-T-AATGC
** * ** *
73814470 CGATGCCATGTCCCAGACATGTTCTTACACTGGCTATC-GTAATGTGGC
1 CGATG-CATGTCCCAGACA-CATCTTACACTAGCCCTCATTAA--T-GC
* *
73814518 TGATGCATGTCCCAGACACATCTTACACTAGCCCTCGTCTCAATGC
1 CGATGCATGTCCCAGACACATCTTACACTAGCCCTCAT-T-AATGC
73814564 CGATGCCATGTCCCAGACA
1 CGATG-CATGTCCCAGACA
73814583 TGGTCTTACA
Statistics
Matches: 121, Mismatches: 27, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
44 4 0.03
45 3 0.02
46 26 0.21
47 67 0.55
48 19 0.16
49 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (44 bp):
CGATGCATGTCCCAGACACATCTTACACTAGCCCTCATTAATGC
Found at i:73821883 original size:48 final size:48
Alignment explanation
Indices: 73821714--73821980 Score: 144
Period size: 48 Copynumber: 5.7 Consensus size: 48
73821704 GGGTTAAGTT
** * * * * *
73821714 GCCGATGCCATGTCTAAGACATGGTCTTACACTAGCTCTCGTGTATAAGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCGTCTCT-A-C
** * **
73821764 GCTAATG-CATGTCCCAGACAT-GTCTTACACTAGCACGAAG-CT-TA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-TCGTCTCTAC
* * * * *
73821808 GCCGATG-AATTTCCTAGACA-CGTCTTACACTGGCACTCATCTCTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCGTCTCTAC
* * * *
73821854 GCCGATGCCATGTCCCAAACATGGTCTTAC-CTTGGCTA-TCGTAATGT-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC-TGGC-ACTCGT-CTCTAC
* * * * * * *
73821902 GCTGATG-CATGTCCCAGACA-CGTCTTACACTAGCCCTTGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCGTCTCTAC
73821948 GCCGATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
73821981 AGCTCTCACA
Statistics
Matches: 164, Mismatches: 38, Indels: 32
0.70 0.16 0.14
Matches are distributed among these distances:
44 31 0.19
45 3 0.02
46 27 0.16
47 37 0.23
48 45 0.27
49 16 0.10
50 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCGTCTCTAC
Found at i:73821983 original size:48 final size:46
Alignment explanation
Indices: 73821713--73821983 Score: 137
Period size: 47 Copynumber: 5.8 Consensus size: 46
73821703 TGGGTTAAGT
** * *
73821713 TGCCGATGCCATGTCTAAGACATGGTCTTACACTAGCTCTCGTGTATAA
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGC-C-CTTGTCTAA
** *** *
73821762 GTGCTAATGCATGTCCCAGACAT-GTCTTACACTAGCACGAAG-CTTA
1 -TGCCGATGCATGTCCCAGACATGGTCTTACACTAGC-CCTTGTCTAA
* * * * * * *
73821808 -GCCGATGAATTTCCTAGACA-CGTCTTACACTGGCACTCATCTCT-A
1 TGCCGATGCATGTCCCAGACATGGTCTTACACTAGC-C-CTTGTCTAA
* * * * *
73821853 CGCCGATGCCATGTCCCAAACATGGTCTTAC-CTTG-GC-TATCGTAA
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCCCTTGTC-TAA
* *
73821898 TGTGGCTGATGCATGTCCCAGACA-CGTCTTACACTAGCCCTTGTCTCAA
1 --T-GCCGATGCATGTCCCAGACATGGTCTTACACTAGCCCTTGTCT-AA
73821947 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGC
73821984 TCTCACATCA
Statistics
Matches: 168, Mismatches: 36, Indels: 36
0.70 0.15 0.15
Matches are distributed among these distances:
43 3 0.02
44 31 0.18
45 3 0.02
46 24 0.14
47 42 0.25
48 42 0.25
49 17 0.10
50 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCCCTTGTCTAA
Found at i:73829718 original size:40 final size:41
Alignment explanation
Indices: 73829663--73829854 Score: 257
Period size: 40 Copynumber: 4.8 Consensus size: 41
73829653 ATTTGAATGA
* *
73829663 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* *
73829703 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
*
73829743 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * *
73829784 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * *
73829824 G-CCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCT
73829855 TGTGGTAATA
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 135 0.96
41 5 0.04
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.26
Consensus pattern (41 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
Found at i:73843473 original size:24 final size:24
Alignment explanation
Indices: 73843423--73843476 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
73843413 AATCGAATTT
*
73843423 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
73843447 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
73843471 GCACAC
1 GCACAC
73843477 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:73854426 original size:40 final size:39
Alignment explanation
Indices: 73854382--73854566 Score: 248
Period size: 40 Copynumber: 4.6 Consensus size: 39
73854372 GCTACTCGCT
**
73854382 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCACA
*
73854422 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCACA
*
73854462 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCACA
* *
73854502 -ACAATGCCTTCAGGACTTAGCCCGGAATTAGTCACT-AGCA
1 CA-AATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCA-CA
73854542 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
73854567 TTATCATCCG
Statistics
Matches: 134, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 2 0.01
40 131 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCACA
Found at i:73854508 original size:80 final size:79
Alignment explanation
Indices: 73854363--73854566 Score: 279
Period size: 80 Copynumber: 2.5 Consensus size: 79
73854353 GGGGATTTAA
* **
73854363 CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCACACAAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
73854428 CCTTCGGGACTTAGC
65 CCTTCAGGACTTAGC
*
73854443 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCA-ACAA
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCACACA-AA
73854506 TGCCTTCAGGACTTAGC
63 TGCCTTCAGGACTTAGC
*
73854523 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
73854567 TTATCATCCG
Statistics
Matches: 113, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
79 4 0.04
80 109 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGC
CTTCAGGACTTAGC
Found at i:73857420 original size:43 final size:43
Alignment explanation
Indices: 73857359--73857456 Score: 151
Period size: 43 Copynumber: 2.3 Consensus size: 43
73857349 CATAAGACCA
* * *
73857359 TGGCATCGTTATATGTGTGTGAGTGAGACCACATTTAATACGT
1 TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
*
73857402 TGGCATCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
*
73857445 TGGCATTGATAT
1 TGGCATCGATAT
73857457 GTGATTCTGA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (43 bp):
TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
Found at i:73857495 original size:56 final size:56
Alignment explanation
Indices: 73857408--73857599 Score: 296
Period size: 56 Copynumber: 3.4 Consensus size: 56
73857398 ACGTTGGCAT
*
73857408 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
73857464 TGATATATGTGTGCGAATAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * *
73857520 CGATATATATGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
73857576 C-ATTCTATGTGTGCAAGTAAGACC
1 CGA-TATATGTGTGCGAGTAAGACC
73857600 CTATTTGGGA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
55 1 0.01
56 122 0.99
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:73857617 original size:56 final size:56
Alignment explanation
Indices: 73857408--73857630 Score: 213
Period size: 56 Copynumber: 4.0 Consensus size: 56
73857398 ACGTTGGCAT
* * * * *
73857408 CGATATATGTGTGCGAGTAAGACCACGTTTAATAC-GTTGGCATTGATATGTGATTC
1 CGATATATATGTGTGAGTAAGACCACATTTAAGACAG-TGGCATCGATATGTGATTC
* * * * * *
73857464 TGATATATGTGTGCGAATAAGACCACGTTTAATAC-GTTGGCATCGATATGTGATTC
1 CGATATATATGTGTGAGTAAGACCACATTTAAGACAG-TGGCATCGATATGTGATTC
* * *
73857520 CGATATATATGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
1 CGATATATATGTGTGAGTAAGACCACATTTAAGACAGTGGCATCGATATGTGATTC
* **
73857576 C-AT-TCTATGTGTGCAAGTAAGACC-CTATTTGGGACAGTGGCATCGATATGTGATT
1 CGATATATATGTGTG--AGTAAGACCAC-ATTTAAGACAGTGGCATCGATATGTGATT
73857631 ACATGTAAGA
Statistics
Matches: 149, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
54 9 0.06
55 3 0.02
56 137 0.92
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (56 bp):
CGATATATATGTGTGAGTAAGACCACATTTAAGACAGTGGCATCGATATGTGATTC
Found at i:73857617 original size:112 final size:112
Alignment explanation
Indices: 73857408--73857630 Score: 292
Period size: 112 Copynumber: 2.0 Consensus size: 112
73857398 ACGTTGGCAT
* * * *
73857408 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATTCTGATATATG
1 CGATATATATGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTCATATATG
* *
73857473 TGTGCGAATAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
66 TGTGCGAATAAGACCACATTTAAGACGTTGGCATCGATATGTGATTC
* *
73857520 CGATATATATGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC-CATTCTAT
1 CGATATATATGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTCA-TATAT
**
73857584 GTGTGC-AAGTAAGACC-CTATTTGGGACAG-TGGCATCGATATGTGATT
65 GTGTGCGAA-TAAGACCAC-ATTTAAGAC-GTTGGCATCGATATGTGATT
73857631 ACATGTAAGA
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
111 4 0.04
112 92 0.95
113 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (112 bp):
CGATATATATGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTCATATATG
TGTGCGAATAAGACCACATTTAAGACGTTGGCATCGATATGTGATTC
Found at i:73861361 original size:20 final size:21
Alignment explanation
Indices: 73861336--73861375 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
73861326 CACTTAAAGC
*
73861336 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
73861356 AGGGCAACACGCCCATGTGG
1 AGGGCAACACGCCCATGTGG
73861376 CCATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:73863585 original size:67 final size:67
Alignment explanation
Indices: 73863501--73863688 Score: 324
Period size: 67 Copynumber: 2.8 Consensus size: 67
73863491 TACTATGTGT
73863501 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
73863566 GG
66 GG
73863568 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
73863633 GG
66 GG
* ** * *
73863635 ACACCATGTAGACAAGAGAGCTACGAGATA-AACTAGCTAGGTCACATGGGTGGT
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGT
73863689 ACTAAGTGTA
Statistics
Matches: 116, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
66 20 0.17
67 96 0.83
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.20
Consensus pattern (67 bp):
ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
GG
Found at i:73869770 original size:56 final size:56
Alignment explanation
Indices: 73869684--73869865 Score: 285
Period size: 56 Copynumber: 3.2 Consensus size: 56
73869674 ACCATGGCAT
73869684 CGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * *
73869740 CGATATATGTGTGCGAGTAAGACCACGTTTAATACATTTGCATCGATATGTGATTC
1 CGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * *
73869796 TGATATATGTGTGCAAGTAAGACCAAGTTTAAAACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
*
73869852 C-ATTCTATGTGTGC
1 CGA-TATATGTGTGC
73869866 CAATAAAACC
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
55 1 0.01
56 113 0.99
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:73869895 original size:112 final size:112
Alignment explanation
Indices: 73869685--73869906 Score: 297
Period size: 112 Copynumber: 2.0 Consensus size: 112
73869675 CCATGGCATC
* *
73869685 GATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGT
1 GATATATGTGTGCAAGTAAGACCAAGTTTAAAACGTTGGCATCGATATGTGATTCCGATATATGT
* * * * * *
73869750 GTGCGAGTAAGACCACGTTTAATACATTTGCATCGATATGTGATTCT
66 GTGCCAATAAGAACACGTTTAAGACAGTGGCATCGATATGTGATTCT
*
73869797 GATATATGTGTGCAAGTAAGACCAAGTTTAAAACGTTGGCATCGATATGTGATTCC-ATTCTATG
1 GATATATGTGTGCAAGTAAGACCAAGTTTAAAACGTTGGCATCGATATGTGATTCCGA-TATATG
**
73869861 TGTGCCAATAA-AAC-CGTATCTGGGACAGTGGCATCGATATGTGATT
65 TGTGCCAATAAGAACACGT-T-TAAGACAGTGGCATCGATATGTGATT
73869907 ACATGTAAGA
Statistics
Matches: 96, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
110 3 0.03
111 4 0.04
112 89 0.93
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32
Consensus pattern (112 bp):
GATATATGTGTGCAAGTAAGACCAAGTTTAAAACGTTGGCATCGATATGTGATTCCGATATATGT
GTGCCAATAAGAACACGTTTAAGACAGTGGCATCGATATGTGATTCT
Found at i:73871556 original size:8 final size:7
Alignment explanation
Indices: 73871528--73871554 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
73871518 TGACTTGGTA
73871528 AAAAAAT
1 AAAAAAT
73871535 AAAAAAT
1 AAAAAAT
73871542 AAAAAAT
1 AAAAAAT
73871549 AAAAAA
1 AAAAAA
73871555 ATTGATGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:73878544 original size:39 final size:39
Alignment explanation
Indices: 73878489--73878615 Score: 128
Period size: 40 Copynumber: 3.2 Consensus size: 39
73878479 GAATTTTTGG
* * *
73878489 CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAAGCCTTCGGGTCTTAGC
** *
73878528 CCGGATATAGCAACTCGCACAAATGCCTTCGAATCTTAGT
1 CCGGATATAGCAACTCGCACAAA-GCCTTCGGGTCTTAGC
** * * * *
73878568 CCGGATATAGTTACTAGCATAAAAGCCTTCTGGACTTAGC
1 CCGGATATAGCAACTCGCA-CAAAGCCTTCGGGTCTTAGC
73878608 CCGGATAT
1 CCGGATAT
73878616 CATTCGAATA
Statistics
Matches: 71, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 20 0.28
40 48 0.68
41 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
CCGGATATAGCAACTCGCACAAAGCCTTCGGGTCTTAGC
Found at i:73886606 original size:40 final size:40
Alignment explanation
Indices: 73886515--73886610 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
73886505 GGATATAACC
* * * *
73886515 ACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
73886554 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
73886594 ACTCGCACAAATGCCTT
1 ACTCGCACAAATGCCTT
73886611 NNNNNNNNNN
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
39 7 0.15
40 40 0.85
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:73899016 original size:57 final size:58
Alignment explanation
Indices: 73898916--73899039 Score: 155
Period size: 57 Copynumber: 2.1 Consensus size: 58
73898906 AATTTCAGGT
73898916 CATTTTCATTTTAATTTTGGAGAAAAACACATTCATTTCCAAATCG-TTT-CATTTCTC
1 CATTTTCATTTTAATTTTGGAGAAAAACACATTCATTTCCAAAT-GATTTACATTTCTC
* * * *
73898973 CATTTTCATTTTCATTTTGGAGAAAACCATAGTT-ATTTTCAAATGATTTACCATTTCTC
1 CATTTTCATTTTAATTTTGGAGAAAAACACA-TTCATTTCCAAATGATTTA-CATTTCTC
*
73899032 TATTTTCA
1 CATTTTCA
73899040 CAATTTATTT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
56 1 0.02
57 40 0.69
58 2 0.03
59 15 0.26
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.46
Consensus pattern (58 bp):
CATTTTCATTTTAATTTTGGAGAAAAACACATTCATTTCCAAATGATTTACATTTCTC
Found at i:73907390 original size:68 final size:67
Alignment explanation
Indices: 73907318--73907467 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73907308 CATCATGTGT
* * * *
73907318 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73907380 ATGTAG
62 ATGTAG
** * *
73907386 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73907451 AG
66 AG
73907453 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73907468 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73907423 original size:64 final size:64
Alignment explanation
Indices: 73907342--73907525 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
73907332 AGACATTATG
* *
73907342 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73907406 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73907471 AA
63 AA
* * * *
73907473 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73907526 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73922588 original size:46 final size:46
Alignment explanation
Indices: 73922352--73922568 Score: 389
Period size: 46 Copynumber: 4.7 Consensus size: 46
73922342 AACCCGCCCC
** *
73922352 TAAGTGAACTCGGACTCAACTCAACGAGCTTAGGCGTTCGCATCCC
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
73922398 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
*
73922444 TGAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
73922490 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
*
73922536 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73922569 ATGCTTAACC
Statistics
Matches: 165, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 165 1.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.20
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
Found at i:73936812 original size:24 final size:24
Alignment explanation
Indices: 73936785--73936832 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
73936775 GGAAGAATAT
73936785 GAGTTGTAGTTGTCTAATAAACAA
1 GAGTTGTAGTTGTCTAATAAACAA
73936809 GAGTTGTAGTTGTCTAATAAACAA
1 GAGTTGTAGTTGTCTAATAAACAA
73936833 CTTTTGTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
GAGTTGTAGTTGTCTAATAAACAA
Found at i:73948126 original size:29 final size:28
Alignment explanation
Indices: 73948089--73948154 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
73948079 TTTTCATTTA
* *
73948089 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCT-AATATACACT
* *
73948118 TTTCTCAATTTAATCCCTAATATACATT
1 TTTCTCAATTTAACCCCTAATATACACT
73948146 TTTACTCAA
1 TTT-CTCAA
73948155 AATCACTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (28 bp):
TTTCTCAATTTAACCCCTAATATACACT
Found at i:73949867 original size:7 final size:7
Alignment explanation
Indices: 73949837--73949879 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
73949827 GAGGAGATAA
*
73949837 TGATGAA
1 TGATGAG
73949844 TGATGAG
1 TGATGAG
73949851 TGATGAG
1 TGATGAG
*
73949858 TGATGGG
1 TGATGAG
73949865 TGATGAG
1 TGATGAG
*
73949872 GGATGAG
1 TGATGAG
73949879 T
1 T
73949880 AGAAATGTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.28, C:0.00, G:0.44, T:0.28
Consensus pattern (7 bp):
TGATGAG
Done.