Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 222 of 276
Found at i:73955022 original size:34 final size:33
Alignment explanation
Indices: 73954979--73955066 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 33
73954969 TCTATTTGTA
*
73954979 TACTGTTACTGTAAAGGGCTCAAGCCTAGACTGC
1 TACTGTTACTG-AAAGGGCTCAAGCCCAGACTGC
* ** *
73955013 TACTGTTACTGCAACGGGCTCTCGCCCAGATTGC
1 TACTGTTACTG-AAAGGGCTCAAGCCCAGACTGC
*
73955047 TATTGTTACTGAAATGGGCT
1 TACTGTTACTGAAA-GGGCT
73955067 AAGGCCCTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
33 2 0.04
34 43 0.96
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.30
Consensus pattern (33 bp):
TACTGTTACTGAAAGGGCTCAAGCCCAGACTGC
Found at i:73955950 original size:18 final size:17
Alignment explanation
Indices: 73955918--73955952 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
73955908 CTCTAGTTAG
73955918 AGTAAACTACGAACTGT
1 AGTAAACTACGAACTGT
*
73955935 AGTAAGACTGCGAACTGT
1 AGTAA-ACTACGAACTGT
73955953 GAAAACAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (17 bp):
AGTAAACTACGAACTGT
Found at i:73976734 original size:40 final size:40
Alignment explanation
Indices: 73976660--73976816 Score: 201
Period size: 40 Copynumber: 3.9 Consensus size: 40
73976650 GATAACTGGA
* *
73976660 CTAAGATCCGAAGGCATTCT-TGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATT-TGTGCGAGTTGTTATATCCGGG
* * * *
73976700 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
* * *
73976740 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTACATCCGGA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
73976780 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
73976817 AGCTAAATCC
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 95 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:73977736 original size:21 final size:21
Alignment explanation
Indices: 73977695--73977736 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73977685 AAGAAAGGAA
* **
73977695 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
73977716 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
73977737 GGTCATTACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:73985088 original size:36 final size:36
Alignment explanation
Indices: 73985037--73985107 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
73985027 TGACAGCCCA
73985037 AAATTGACCCCAGTCGGGAAGTGGTTTCGGGACCGC
1 AAATTGACCCCAGTCGGGAAGTGGTTTCGGGACCGC
*
73985073 AAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCG
1 AAATTGACCCCAGTCGGGAAGTGGTTTCGGGACCG
73985108 TTAAACCGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.23, G:0.34, T:0.21
Consensus pattern (36 bp):
AAATTGACCCCAGTCGGGAAGTGGTTTCGGGACCGC
Found at i:73986732 original size:27 final size:28
Alignment explanation
Indices: 73986623--73986745 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
73986613 GAGATTGGCG
* * * *
73986623 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
73986652 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
73986680 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
73986708 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
73986735 CTGAGTGTGCG
1 CTAAGTGTGCG
73986746 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:73986735 original size:55 final size:57
Alignment explanation
Indices: 73986623--73986745 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
73986613 GAGATTGGCG
* * * *
73986623 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
73986680 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
73986735 CTGAGTGTGCG
1 CTAAGTGTGCG
73986746 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:73986756 original size:27 final size:27
Alignment explanation
Indices: 73986648--73986758 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
73986638 TAAATTGTAC
** * *
73986648 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
73986676 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
73986704 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
73986731 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
73986758 A
1 A
73986759 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:73995728 original size:19 final size:19
Alignment explanation
Indices: 73995704--73995779 Score: 143
Period size: 19 Copynumber: 4.0 Consensus size: 19
73995694 CGACCTGAGG
*
73995704 ACACGGGTGTGCCAAAGGC
1 ACACGGGCGTGCCAAAGGC
73995723 ACACGGGCGTGCCAAAGGC
1 ACACGGGCGTGCCAAAGGC
73995742 ACACGGGCGTGCCAAAGGC
1 ACACGGGCGTGCCAAAGGC
73995761 ACACGGGCGTGCCAAAGGC
1 ACACGGGCGTGCCAAAGGC
73995780 CCTATGTCCA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 56 1.00
ACGTcount: A:0.26, C:0.30, G:0.37, T:0.07
Consensus pattern (19 bp):
ACACGGGCGTGCCAAAGGC
Found at i:73998447 original size:42 final size:43
Alignment explanation
Indices: 73998348--73998486 Score: 172
Period size: 43 Copynumber: 3.3 Consensus size: 43
73998338 TGTGATATTG
* * * * *
73998348 TGTAAGACCATGCCTGGGACATTGACATCGATCTAAGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTACA
*
73998391 TGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTACA
* * * * *
73998433 TGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTACA
73998476 TGTAAGACCAT
1 TGTAAGACCAT
73998487 ATCTAGGATA
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 35 0.43
43 47 0.57
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTACA
Found at i:73998501 original size:42 final size:42
Alignment explanation
Indices: 73998348--73998502 Score: 141
Period size: 43 Copynumber: 3.7 Consensus size: 42
73998338 TGTGATATTG
* * * * * * * *
73998348 TGTAAGACCATGCCTGGGACATTGACATCGATCTAAGATTACG
1 TGTAAGACCATGTCTAGGACAGTGGCATC-ATATATGATAACA
* * **
73998391 TGTAAGACCATGTCTGGGACATTGGCATCATATATGATTTCA
1 TGTAAGACCATGTCTAGGACAGTGGCATCATATATGATAACA
* *
73998433 TGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGATAACA
1 TGTAAGACCATGTCTAGGACAGTGGCATC-ATATATGATAACA
* *
73998476 TGTAAGACCATATCTAGGATA-TGGCAT
1 TGTAAGACCATGTCTAGGACAGTGGCAT
73998503 TGTACTAGTT
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
42 41 0.43
43 55 0.57
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACAGTGGCATCATATATGATAACA
Found at i:74003621 original size:101 final size:99
Alignment explanation
Indices: 74003441--74003628 Score: 286
Period size: 101 Copynumber: 1.9 Consensus size: 99
74003431 GAAGCTATCT
* *
74003441 GGTATGCATAGTAGCCTGCACTTAGTACTACAATGCAACCAACAATCCGGCGCACGTAGTAGCCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACAATGCAACCAACAATCCGGCACACGTAGTAGCCT
*
74003506 GCACTTAGTACTACACATGTGATTGAAGTTTTCG
66 GCACTTAGTACTACACACGTGATTGAAGTTTTCG
* * * *
74003540 GGTACGCATAGTAGCTTGCACTTAGTACTACAAATGCAACCTAACTATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTAC-AATGCAACC-AACAATCCGGCACACGTAGTAGC
*
74003605 CTGTACTTAGTACTACACACGTGA
64 CTGCACTTAGTACTACACACGTGA
74003629 CCTAAAACCA
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 29 0.37
100 9 0.11
101 41 0.52
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (99 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACAATGCAACCAACAATCCGGCACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATTGAAGTTTTCG
Found at i:74005961 original size:40 final size:40
Alignment explanation
Indices: 74005869--74005991 Score: 169
Period size: 40 Copynumber: 3.1 Consensus size: 40
74005859 TTGACAACAA
**
74005869 TTCGGCTAAGTATGGCACTTAGTGTGTGATTC-AAATAGC
1 TTCGGCTAAGTATGGCACTTAGTGTGCAATTCGAAATAGC
* *
74005908 TTTGGCTAAGTATGGCACTTAGTGTGCAATTCGAGATAGC
1 TTCGGCTAAGTATGGCACTTAGTGTGCAATTCGAAATAGC
*
74005948 TTCGGCTATGTATGGCACTTAGTGTGCGAGATT-GAAATAGC
1 TTCGGCTAAGTATGGCACTTAGTGTGC-A-ATTCGAAATAGC
74005989 TTC
1 TTC
74005992 AACTATTATT
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 29 0.39
40 31 0.42
41 11 0.15
42 3 0.04
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.33
Consensus pattern (40 bp):
TTCGGCTAAGTATGGCACTTAGTGTGCAATTCGAAATAGC
Found at i:74022083 original size:41 final size:41
Alignment explanation
Indices: 74022021--74022102 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
74022011 TAAACAACAC
*
74022021 CCGATTAAAACCTTATTTTGATGAGATTGATAGCAGGAATG
1 CCGACTAAAACCTTATTTTGATGAGATTGATAGCAGGAATG
*
74022062 CCGACTAAAATCTTATTTTGATGAGATTGATAGCAGGAATG
1 CCGACTAAAACCTTATTTTGATGAGATTGATAGCAGGAATG
74022103 AGGAGTATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (41 bp):
CCGACTAAAACCTTATTTTGATGAGATTGATAGCAGGAATG
Found at i:74022519 original size:55 final size:55
Alignment explanation
Indices: 74022379--74022519 Score: 138
Period size: 55 Copynumber: 2.6 Consensus size: 55
74022369 TCTGATATGG
* * * * *
74022379 CCGTGGTCGAGCCTGCGAAAACAACACGGGCGTGCGACACACCCGTGTGGAAGAC
1 CCGTGGTCGAACCTGAGAAAATAACACGGGCGTGCGACACACCCGTGTCGAACAC
* * * * * ** * *
74022434 CCGTGGTTGAAACTGAGAAACTAGCGCGGGCGTGCGACATGCTCGTGTCTAACAC
1 CCGTGGTCGAACCTGAGAAAATAACACGGGCGTGCGACACACCCGTGTCGAACAC
**
74022489 CCGTGGTCGAACCTGTTAAAATAACACGGGC
1 CCGTGGTCGAACCTGAGAAAATAACACGGGC
74022520 ATGGGGATTG
Statistics
Matches: 65, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
55 65 1.00
ACGTcount: A:0.26, C:0.28, G:0.30, T:0.16
Consensus pattern (55 bp):
CCGTGGTCGAACCTGAGAAAATAACACGGGCGTGCGACACACCCGTGTCGAACAC
Found at i:74024418 original size:39 final size:39
Alignment explanation
Indices: 74024351--74024428 Score: 90
Period size: 38 Copynumber: 2.0 Consensus size: 39
74024341 AAGATGTTTA
*
74024351 GAAATATTTATTTATTATTTTATGTTTTA-ATTTTTATT
1 GAAATATTTATTTATTATTTTATGTTTTAGAATTTTATT
*
74024389 GAAACTATTT-TTTATTTTTGTTA-GATTTTAGAATTTTATT
1 GAAA-TATTTATTTATTATT-TTATG-TTTTAGAATTTTATT
74024429 TTTAATTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
38 13 0.38
39 13 0.38
40 8 0.24
ACGTcount: A:0.28, C:0.01, G:0.08, T:0.63
Consensus pattern (39 bp):
GAAATATTTATTTATTATTTTATGTTTTAGAATTTTATT
Found at i:74028544 original size:48 final size:48
Alignment explanation
Indices: 74028475--74028727 Score: 461
Period size: 48 Copynumber: 5.3 Consensus size: 48
74028465 AGATAAATAT
* *
74028475 ATATGTATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
*
74028523 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
74028571 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
*
74028619 ATATGTATGTGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
74028667 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
*
74028715 ATATGTAGGAGAT
1 ATATGTATGAGAT
74028728 GTGTGTATAT
Statistics
Matches: 200, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 200 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
Found at i:74028920 original size:37 final size:37
Alignment explanation
Indices: 74028870--74028970 Score: 175
Period size: 37 Copynumber: 2.7 Consensus size: 37
74028860 AAATATATTT
74028870 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
74028907 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
74028944 TGGGTAAGACCCGATAACTACGTGTGG
1 CGGGTAAGACCCGATGACTACGTGTGG
74028971 GGACTATTCG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:74035645 original size:66 final size:69
Alignment explanation
Indices: 74035561--74035690 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 69
74035551 ACATGGTGAA
* *
74035561 CACTTAGTATCACTCATGCGACCTAGC-CGA-TT-TGTCT-CGTAGCTCTCTTGTCTACATGGTG
1 CACTTAGTATCACGCATGCGACCTAGCAC-ATTTATCTCTACGTAGCTCTCTTGTCTACATGGTG
74035622 TCCTT
65 TCCTT
74035627 CACTT-GTAATCACGCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG
1 CACTTAGT-ATCACGCATGCGACCTAGC-ACATTTATCTCT-ACGTAGCTCTCTTGTCTACATGG
74035691 GATACATCCC
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
65 2 0.04
66 23 0.42
67 1 0.02
68 3 0.05
69 4 0.07
71 22 0.40
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (69 bp):
CACTTAGTATCACGCATGCGACCTAGCACATTTATCTCTACGTAGCTCTCTTGTCTACATGGTGT
CCTT
Found at i:74035742 original size:68 final size:69
Alignment explanation
Indices: 74035595--74035750 Score: 160
Period size: 68 Copynumber: 2.2 Consensus size: 69
74035585 AGCCGATTTG
* * * * *
74035595 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGTAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGTAATCACACATGCGACCTAGCTACATA
*
74035660 TATC
66 TATA
*
74035664 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT-ATCACACATGTGACCTAGCTAC
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGTAATCACACATGCGACCTAGCTAC
74035725 TATATAGTA
63 -ATATA-TA
74035734 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
74035751 ACGCATGATG
Statistics
Matches: 74, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
67 1 0.01
68 32 0.43
69 9 0.12
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (69 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGTAATCACACATGCGACCTAGCTACATA
TATA
Found at i:74039364 original size:37 final size:37
Alignment explanation
Indices: 74039314--74039392 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
74039304 TTATTACGAA
* *
74039314 GTCTTACCCGGACATAA-TCTTCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-TCACACGAAGTCATCGG
*
74039351 GTCTTACCCGGACAAAATTCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCTCACACGAAGTCATCGG
74039388 GTCTT
1 GTCTT
74039393 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCTCACACGAAGTCATCGG
Found at i:74039507 original size:49 final size:49
Alignment explanation
Indices: 74039433--74040073 Score: 1042
Period size: 49 Copynumber: 13.1 Consensus size: 49
74039423 CCCTTCGGGA
* * * * *
74039433 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
74039480 CCTGTCACATATATATACACTTCCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74039529 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74039576 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74039625 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74039674 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74039723 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74039772 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74039821 CTTATCACACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74039874 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74039923 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74039972 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74040023 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74040070 CTTA
1 CTTA
74040074 CTATCATTTC
Statistics
Matches: 564, Mismatches: 20, Indels: 20
0.93 0.03 0.03
Matches are distributed among these distances:
47 95 0.17
48 1 0.00
49 370 0.66
51 54 0.10
53 44 0.08
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74045960 original size:40 final size:40
Alignment explanation
Indices: 74045788--74045953 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
74045778 AACCCAAGTA
* * **
74045788 CCTTCGGGATTTAG-CCGTATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74045827 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
74045867 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
74045907 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
74045947 CCTTCGG
1 CCTTCGG
74045954 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.11
40 105 0.89
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74053052 original size:40 final size:40
Alignment explanation
Indices: 74052993--74053140 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
74052983 TTGACAACAA
* * *
74052993 TTCGGCTAAGTATGTCACTTACTGTGCGATTCAAGATACC
1 TTCGGCTAAGTATGGCACTTAGTGTGCGATTCAAGATAGC
* *
74053033 TTCGGCTAAGTATGGCACTTAGTGTGCAATTCGAGATAGC
1 TTCGGCTAAGTATGGCACTTAGTGTGCGATTCAAGATAGC
* * * *
74053073 TTCGGTTATGTATGGCACTAAGTGTGCAAGATTGAA-ATAGC
1 TTCGGCTAAGTATGGCACTTAGTGTGC--GATTCAAGATAGC
* *
74053114 TTTGGCTATGTATTGGCACTTAGTGTG
1 TTCGGCTAAGTA-TGGCACTTAGTGTG
74053141 TGAGAATTCA
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
40 59 0.65
41 15 0.16
42 17 0.19
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (40 bp):
TTCGGCTAAGTATGGCACTTAGTGTGCGATTCAAGATAGC
Found at i:74059002 original size:42 final size:42
Alignment explanation
Indices: 74058891--74059177 Score: 337
Period size: 42 Copynumber: 6.8 Consensus size: 42
74058881 CGTACCAATT
* * ** *
74058891 CCATATCCTAGATATGGTCTTACATGTAATCTCGCATCAATG
1 CCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATG
*
74058933 CCAATAGCCCA-ACTATGGTCTTACATGAAATCTCATATCGATG
1 CC-ATATCCCAGA-TATGGTCTTACATGAAATCTCATATCGATG
*
74058976 CCATATCCCAGATATGGTCTTACATGAAATCTCAT-TAGATG
1 CCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATG
* * * *
74059017 TCATATCCCAGATATAGTCTTACATGTAATCTCGTATCGATG
1 CCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATG
* * * *
74059059 CCAATAACCCA-ACTGTGGTATTACATAAAATCTCATATCGATG
1 CC-ATATCCCAGA-TATGGTCTTACATGAAATCTCATATCGATG
* *
74059102 CCATATCCCAGATATGGTCTTACACGAAATCTCATATAGATG
1 CCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATG
* * *
74059144 CCATATCTCAGATATGGTCTTGCACGAAATCTCA
1 CCATATCCCAGATATGGTCTTACATGAAATCTCA
74059178 GTAACCCTAA
Statistics
Matches: 209, Mismatches: 29, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
41 36 0.17
42 104 0.50
43 69 0.33
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATG
Found at i:74059117 original size:126 final size:127
Alignment explanation
Indices: 74058891--74059164 Score: 442
Period size: 126 Copynumber: 2.2 Consensus size: 127
74058881 CGTACCAATT
* * *
74058891 CCATATCCTAGATATGGTCTTACATGTAATCTCGCATCAATGCCAATAGCCCAACTATGGTCTTA
1 CCATATCCCAGATATGGTCTTACATGTAATCTCGCATCAATGCCAATAACCCAACTATGGTATTA
* *
74058956 CATGAAATCTCATATCGATGCCATATCCCAGATATGGTCTTACATGAAATCTCAT-TAGATG
66 CATAAAATCTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATAGATG
* * * * *
74059017 TCATATCCCAGATATAGTCTTACATGTAATCTCGTATCGATGCCAATAACCCAACTGTGGTATTA
1 CCATATCCCAGATATGGTCTTACATGTAATCTCGCATCAATGCCAATAACCCAACTATGGTATTA
74059082 CATAAAATCTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATAGATG
66 CATAAAATCTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATAGATG
*
74059144 CCATATCTCAGATATGGTCTT
1 CCATATCCCAGATATGGTCTT
74059165 GCACGAAATC
Statistics
Matches: 134, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
126 110 0.82
127 24 0.18
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (127 bp):
CCATATCCCAGATATGGTCTTACATGTAATCTCGCATCAATGCCAATAACCCAACTATGGTATTA
CATAAAATCTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATAGATG
Found at i:74059125 original size:85 final size:84
Alignment explanation
Indices: 74058946--74059161 Score: 276
Period size: 85 Copynumber: 2.6 Consensus size: 84
74058936 ATAGCCCAAC
* * *
74058946 TATGGTCTTACATGAAATCTCATATCGATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCA
1 TATGGTCTTACATGAAATCTCATATCGATGCCAATAACCCAGATATGGTATTACATAAAATCTCA
*
74059010 TTAGATGTCATATCCCAGA
66 TTAGATGCCATATCCCAGA
* * * *
74059029 TATAGTCTTACATGTAATCTCGTATCGATGCCAATAACCCA-ACTGTGGTATTACATAAAATCTC
1 TATGGTCTTACATGAAATCTCATATCGATGCCAATAACCCAGA-TATGGTATTACATAAAATCTC
*
74059093 ATATCGATGCCATATCCCAGA
65 AT-TAGATGCCATATCCCAGA
* * * *
74059114 TATGGTCTTACACGAAATCTCATATAGATGCC-ATATCTCAGATATGGT
1 TATGGTCTTACATGAAATCTCATATCGATGCCAATAACCCAGATATGGT
74059162 CTTGCACGAA
Statistics
Matches: 112, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
83 30 0.27
84 38 0.34
85 44 0.39
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (84 bp):
TATGGTCTTACATGAAATCTCATATCGATGCCAATAACCCAGATATGGTATTACATAAAATCTCA
TTAGATGCCATATCCCAGA
Found at i:74068391 original size:50 final size:49
Alignment explanation
Indices: 74068330--74068555 Score: 202
Period size: 50 Copynumber: 4.7 Consensus size: 49
74068320 GAGATGTGTA
74068330 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGTTATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGTTATGTGAGAGC
* * * *
74068379 AAGTGTAAGACCATGTATGATG-CAT-GCATCGGCTACAAG--ATGT--G-TC
1 -AGTGTAAGACCATGTCTG-GGACATGGCATCGGC-AC-GGTTATGTGAGAGC
* *
74068425 AGTGTAAGACCATGCCTAGGACATGGCATCGGCACGGTTATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGTTATGTGAGAGC
* * * * * *
74068474 TAGTGCAAGACCATGTCTAGGACATGGCATCAGC-C--TCGAAGATGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGT-TATG-TGAGAG-C
74068524 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
74068556 TACTTTACCC
Statistics
Matches: 143, Mismatches: 19, Indels: 29
0.75 0.10 0.15
Matches are distributed among these distances:
44 2 0.01
45 20 0.14
46 13 0.09
47 2 0.01
48 3 0.02
49 48 0.34
50 53 0.37
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGTTATGTGAGAGC
Found at i:74068423 original size:95 final size:94
Alignment explanation
Indices: 74068301--74068555 Score: 341
Period size: 95 Copynumber: 2.6 Consensus size: 94
74068291 AAGACTTGTC
** *
74068301 TAGGACATGCATCGGCTTTGAGATGTGTAAGTGTAAGACCATGTCTGGGACATGGCATCGGCACG
1 TAGGACATGCATCGGC-TCAAGATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACG
*
74068366 GTTATGTGAGAGCAAGTGTAAGACCATGTA
65 GTTATGTGAGAGCAAGTGCAAGACCATGTA
* * *
74068396 TGATG-CATGCATCGGCTACAAGATGTGTCAGTGTAAGACCATGCCTAGGACATGGCATCGGCAC
1 T-AGGACATGCATCGGCT-CAAGATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
* *
74068460 GGTTATGTGAGAGCTAGTGCAAGACCATGTC
64 GGTTATGTGAGAGCAAGTGCAAGACCATGTA
*
74068491 TAGGACATGGCATCAGCCTCGAAGATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 TAGGACAT-GCATC-GGCTC-AAGATG-T-GTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
74068556 TACTTTACCC
Statistics
Matches: 139, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
94 3 0.02
95 85 0.61
96 8 0.06
97 9 0.06
98 1 0.01
99 33 0.24
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (94 bp):
TAGGACATGCATCGGCTCAAGATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGG
TTATGTGAGAGCAAGTGCAAGACCATGTA
Found at i:74078087 original size:16 final size:16
Alignment explanation
Indices: 74078068--74078098 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74078058 CTTCTTCACT
74078068 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
74078084 TACTTACTTACTTAA
1 TACTCACTTACTTAA
74078099 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:74078104 original size:20 final size:20
Alignment explanation
Indices: 74078065--74078104 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74078055 AAACTTCTTC
* *
74078065 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
74078085 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
74078105 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:74078477 original size:55 final size:53
Alignment explanation
Indices: 74078299--74078545 Score: 227
Period size: 55 Copynumber: 4.6 Consensus size: 53
74078289 CTTACGATTT
* * * * * *
74078299 CCATGACTTGTCATGGTCTTACATGGTATCCTT--TTTA-AAACTTACCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTTACCAATG
* *
74078349 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTTACCAATG
* * * *
74078402 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGGCTTATAGTAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTTACCAATG
* *
74078457 CCATGTCTTGACATGGTCTTACAT-GAATTCCTTGCCTTA-GAAACCTTACCAATTT
1 CCATGTCTTGACATGGTCTTACATGGGA-TCCTTGCCTTATG-AA-CTTACCAA-TG
* * * *
74078512 CCATGCCTTGGCATGGTCTTAAATGGTATCCTTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTG
74078546 AACCCTAATG
Statistics
Matches: 163, Mismatches: 23, Indels: 17
0.80 0.11 0.08
Matches are distributed among these distances:
50 31 0.19
52 5 0.03
53 46 0.28
54 10 0.06
55 67 0.41
56 4 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTTACCAATG
Found at i:74078489 original size:108 final size:110
Alignment explanation
Indices: 74078337--74078537 Score: 302
Period size: 108 Copynumber: 1.8 Consensus size: 110
74078327 TCCTTTTTAA
* *
74078337 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
74078400 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGGCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTAAATGGGACCTTTGGCTTATAGT
* *
74078445 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGA-ATTCCTTGCCTTAGAAACCTTACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATA-TCCTTGCCTTAGAAACCTCACCAA
*
74078509 TTTCCATGCCTTGGCATGGTCTTAAATGG
65 TTGCCATGCCTTGGCATGGTCTTAAATGG
74078538 TATCCTTGAA
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 2 0.02
108 48 0.58
109 7 0.08
110 26 0.31
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTAAATGGGACCTTTGGCTTATAGT
Found at i:74085093 original size:16 final size:16
Alignment explanation
Indices: 74085074--74085104 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74085064 CTTCTTCACT
74085074 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
74085090 TACTTACTTACTTAA
1 TACTCACTTACTTAA
74085105 TCAAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:74085110 original size:20 final size:20
Alignment explanation
Indices: 74085071--74085110 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74085061 AAACTTCTTC
* *
74085071 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
74085091 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
74085111 TTAATAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:74085372 original size:50 final size:52
Alignment explanation
Indices: 74085296--74085551 Score: 209
Period size: 55 Copynumber: 4.8 Consensus size: 52
74085286 ACACGGGTAC
* *
74085296 CTTACCATTTCCAT-TACTTGTCATGGTCTTACATGGTATCCTT-TTTA-AAA
1 CTTACCATTGCCATGT-CTTGACATGGTCTTACATGGTATCCTTCTTTAGAAA
* *
74085346 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGTCTTATG-AA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTCT-TTA-GAAA
* * * * * *
74085399 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCATTGCCTTATAGTAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCC-TT--CTT-TAGAAA
* * * * * *
74085454 CTTATCAATGCTATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTT-CTTTAGAAA
* *
74085507 CCTTACCAATTGCAAT-TCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACC-ATTGCCATGT-CTTGACATGGTCTTACATGGTATCCTT
74085552 GAATCCTAAT
Statistics
Matches: 166, Mismatches: 26, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
50 38 0.23
51 2 0.01
52 5 0.03
53 42 0.25
54 10 0.06
55 67 0.40
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (52 bp):
CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTCTTTAGAAA
Found at i:74101513 original size:14 final size:14
Alignment explanation
Indices: 74101496--74101522 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74101486 AGAAAGAAAA
74101496 TTTGGGAAAATACT
1 TTTGGGAAAATACT
74101510 TTTGGGAAAATAC
1 TTTGGGAAAATAC
74101523 GATTGATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.33
Consensus pattern (14 bp):
TTTGGGAAAATACT
Found at i:74107542 original size:31 final size:31
Alignment explanation
Indices: 74107499--74107562 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
74107489 CCTTTTCATA
74107499 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
74107530 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
74107561 TT
1 TT
74107563 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:74107802 original size:24 final size:24
Alignment explanation
Indices: 74107755--74107897 Score: 220
Period size: 24 Copynumber: 6.0 Consensus size: 24
74107745 GCTTTATCAT
*
74107755 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
74107780 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
74107804 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
74107827 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
74107851 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
74107875 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74107898 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
23 23 0.21
24 74 0.67
25 14 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:74107830 original size:47 final size:49
Alignment explanation
Indices: 74107755--74107897 Score: 222
Period size: 47 Copynumber: 3.0 Consensus size: 49
74107745 GCTTTATCAT
*
74107755 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTA
*
74107804 ATAACTGGGGCATAAGCCC-TTTAATAACTAGGGCATAAGCCC-TTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
74107851 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
74107898 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
47 39 0.45
48 33 0.38
49 15 0.17
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
Found at i:74107973 original size:20 final size:20
Alignment explanation
Indices: 74107937--74107992 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
74107927 CCAATGCATT
* *
74107937 TATGA-ACATCTCGTGTGCA
1 TATGATACATATCATGTGCA
74107956 TATGATACATATCATGTGCA
1 TATGATACATATCATGTGCA
*
74107976 TATCATACATATCATGT
1 TATGATACATATCATGT
74107993 TTATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 5 0.15
20 28 0.85
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (20 bp):
TATGATACATATCATGTGCA
Found at i:74108057 original size:25 final size:25
Alignment explanation
Indices: 74108029--74108076 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74108019 ATATATAAAC
* * *
74108029 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74108054 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74108077 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74114843 original size:28 final size:29
Alignment explanation
Indices: 74114811--74114909 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 29
74114801 ATAATAAGCC
*
74114811 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
*
74114839 CGCACACTTAGTGC-TATATAATC-AACCT
1 CGCACACTTAGTGCTTACATAATCGAA-CT
* * *
74114867 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
74114896 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74114910 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.07
28 35 0.57
29 17 0.28
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:74115129 original size:60 final size:60
Alignment explanation
Indices: 74115053--74115168 Score: 223
Period size: 60 Copynumber: 1.9 Consensus size: 60
74115043 TCCATTCAGC
74115053 ATCATTACATAAACGTTATGACCATTTAAATTAATACAAAATATATGCTTAATGACCAGA
1 ATCATTACATAAACGTTATGACCATTTAAATTAATACAAAATATATGCTTAATGACCAGA
*
74115113 ATCATTACATAGACGTTATGACCATTTAAATTAATACAAAATATATGCTTAATGAC
1 ATCATTACATAAACGTTATGACCATTTAAATTAATACAAAATATATGCTTAATGAC
74115169 TTACCTTGTG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.33
Consensus pattern (60 bp):
ATCATTACATAAACGTTATGACCATTTAAATTAATACAAAATATATGCTTAATGACCAGA
Found at i:74119057 original size:26 final size:26
Alignment explanation
Indices: 74119028--74119079 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
74119018 TAAAAAAATT
*
74119028 CATAAACTGTAAATCAAATAATTATC
1 CATAAACCGTAAATCAAATAATTATC
74119054 CATAAACCGTAAATCAAATAATTATC
1 CATAAACCGTAAATCAAATAATTATC
74119080 TTTACCTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.29
Consensus pattern (26 bp):
CATAAACCGTAAATCAAATAATTATC
Found at i:74122871 original size:20 final size:20
Alignment explanation
Indices: 74122846--74122887 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
74122836 CGTTCTATTT
74122846 ATATTTTATT-TTATATATAA
1 ATATTTT-TTATTATATATAA
*
74122866 ATATTTTTTATTATATTTAA
1 ATATTTTTTATTATATATAA
74122886 AT
1 AT
74122888 TGTTGTTCGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATTTTTTATTATATATAA
Found at i:74123427 original size:82 final size:82
Alignment explanation
Indices: 74123290--74124192 Score: 1779
Period size: 82 Copynumber: 11.0 Consensus size: 82
74123280 TACAAAACGA
*
74123290 ATCAACCATGCCTTCCAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74123355 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74123372 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74123437 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74123454 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74123519 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74123536 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74123601 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74123618 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74123683 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74123700 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74123765 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74123782 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74123847 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74123864 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74123929 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74123946 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74124011 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
74124028 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
74124093 GTTCCTATGACACCAAG
66 GTTCCTATGACACCAAG
*
74124110 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTCTTCCTTTTT
1 ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
*
74124175 GTTCCTATGACACAAAG
66 GTTCCTATGACACCAAG
74124192 A
1 A
74124193 AAACCAATCT
Statistics
Matches: 818, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 818 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (82 bp):
ATCAACCATGCCTTCTAAGAGCAATGACACTTGAAAACTGGTGGATCAAAAGTCTTTTCCTTTTT
GTTCCTATGACACCAAG
Found at i:74126837 original size:19 final size:18
Alignment explanation
Indices: 74126795--74126837 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
74126785 AAAAAAATAC
* *
74126795 CAAATCAAAATTAAAGTT
1 CAAAACAAAATTAAAGCT
74126813 CTAAAACAAAATTAAAAGCT
1 C-AAAACAAAATT-AAAGCT
74126833 CAAAA
1 CAAAA
74126838 GTCCGTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 14 0.67
20 6 0.29
ACGTcount: A:0.60, C:0.14, G:0.05, T:0.21
Consensus pattern (18 bp):
CAAAACAAAATTAAAGCT
Found at i:74130064 original size:41 final size:41
Alignment explanation
Indices: 74130014--74130118 Score: 122
Period size: 41 Copynumber: 2.6 Consensus size: 41
74130004 GTTAATTATT
* * * *
74130014 CCCTGAATTGCACATATGTGCCCCT-ATTTGTACTTCGGTAC
1 CCCTAAATTGCACATACGTGCCCATGA-TTGTACTTCGATAC
74130055 CCCTAAATTGCACATACGTGCCCATGATTGTACTTCGATAC
1 CCCTAAATTGCACATACGTGCCCATGATTGTACTTCGATAC
* * * *
74130096 CCTTGAATTGAACATGCGTGCCC
1 CCCTAAATTGCACATACGTGCCC
74130119 TGTTTACACT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 54 0.98
42 1 0.02
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (41 bp):
CCCTAAATTGCACATACGTGCCCATGATTGTACTTCGATAC
Found at i:74142909 original size:41 final size:39
Alignment explanation
Indices: 74142833--74142912 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 39
74142823 CGAAATCCCA
** *
74142833 ATCAAAATTTTTAATTCTTTTTTTATTTTATTTTTCCAG
1 ATCAAAACATTTAATTCTTTTTTTATTTTACTTTTCCAG
74142872 ATCAAAACATTTAATTCTGTTTTTTATAATTT-CTTTTCCAG
1 ATCAAAACATTTAATTCT-TTTTTTAT--TTTACTTTTCCAG
74142913 GTACGCAGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 16 0.46
40 8 0.23
41 8 0.23
42 3 0.09
ACGTcount: A:0.28, C:0.12, G:0.04, T:0.56
Consensus pattern (39 bp):
ATCAAAACATTTAATTCTTTTTTTATTTTACTTTTCCAG
Found at i:74148472 original size:19 final size:18
Alignment explanation
Indices: 74148450--74148489 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
74148440 CTTTAATTTC
*
74148450 TTTTAATTTATTATTTTTA
1 TTTTAATTTATT-TTATTA
*
74148469 TTTTACTTTATTTTATTA
1 TTTTAATTTATTTTATTA
74148487 TTT
1 TTT
74148490 ACTATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTAATTTATTTTATTA
Found at i:74148478 original size:24 final size:25
Alignment explanation
Indices: 74148451--74148498 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
74148441 TTTAATTTCT
*
74148451 TTTAATTTATTATTT-TTATTTTAC
1 TTTAATTTATTATTTACTATTTTAC
*
74148475 TTTATTTTATTATTTACTATTTTA
1 TTTAATTTATTATTTACTATTTTA
74148499 TTTTTCAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTAATTTATTATTTACTATTTTAC
Found at i:74149416 original size:96 final size:95
Alignment explanation
Indices: 74149243--74149529 Score: 421
Period size: 96 Copynumber: 3.0 Consensus size: 95
74149233 AAATTAATTT
* * * *
74149243 TTAAGAATATGTTGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTATCATCTCTCTTCACGTCAAA
1 TTAAGAGTATGTTGGGCTGAGTAACGA-GGTGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAA
*
74149308 AGGTTCGATATGTTCTTAAGAAAAATAAAAA
65 AGGTTCAATATGTTCTTAAGAAAAATAAAAA
* * *
74149339 TTAGGAGTGTGTTGGGCTGAGTAACTGAGGTGGGGTGTTTGGCTATCATCTCTCTTCGCGTCAAA
1 TTAAGAGTATGTTGGGCTGAGTAAC-GAGGTGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAA
74149404 AGGTTCAATATGTTCTTAAGAAAAATAAAAA
65 AGGTTCAATATGTTCTTAAGAAAAATAAAAA
* * *
74149435 TTAAGAGTATGTTGGGCTGAGTAACCGAGGTGGAGTGCTTGACTATTATCTCTCTTCGCGTCAAA
1 TTAAGAGTATGTTGGGCTGAGTAA-CGAGGTGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAA
* *
74149500 AGGTTCAATATATTCTTAAGCAAAACTAAA
65 AGGTTCAATATGTTCTTAAG-AAAAATAAA
74149530 GAAAAAAAGG
Statistics
Matches: 172, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
96 162 0.94
97 10 0.06
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (95 bp):
TTAAGAGTATGTTGGGCTGAGTAACGAGGTGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAA
GGTTCAATATGTTCTTAAGAAAAATAAAAA
Found at i:74150144 original size:13 final size:13
Alignment explanation
Indices: 74150120--74150155 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
74150110 TTTAATTCCC
74150120 ATTATATTAGGATA
1 ATTAT-TTAGGATA
*
74150134 ATTATTTAGGATT
1 ATTATTTAGGATA
74150147 ATTATTTAG
1 ATTATTTAG
74150156 ATTTATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (13 bp):
ATTATTTAGGATA
Found at i:74150177 original size:12 final size:13
Alignment explanation
Indices: 74150138--74150179 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
74150128 AGGATAATTA
74150138 TTTAGGA-TTATT
1 TTTAGGATTTATT
74150150 ATTTA-GATTTATT
1 -TTTAGGATTTATT
74150163 TTTAGGATTTATT
1 TTTAGGATTTATT
74150176 TTTA
1 TTTA
74150180 TTTATCTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.22
13 21 0.78
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62
Consensus pattern (13 bp):
TTTAGGATTTATT
Found at i:74150182 original size:10 final size:10
Alignment explanation
Indices: 74150169--74150218 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
74150159 TATTTTTAGG
74150169 ATTTATTTTT
1 ATTTATTTTT
*
74150179 ATTTATCTTT
1 ATTTATTTTT
*
74150189 ATTTATCTTT
1 ATTTATTTTT
* *
74150199 AATTATTTGT
1 ATTTATTTTT
74150209 ATTTATTTTT
1 ATTTATTTTT
74150219 TTGGAATTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:74150182 original size:23 final size:24
Alignment explanation
Indices: 74150138--74150189 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
74150128 AGGATAATTA
*
74150138 TTTAGGATTATTATTTAGATTTATT
1 TTTAGGATTATTATTTA-ATTTATC
74150163 TTTAGGATTTATT-TTT-ATTTATC
1 TTTAGGA-TTATTATTTAATTTATC
74150186 TTTA
1 TTTA
74150190 TTTATCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 10 0.40
25 10 0.40
26 5 0.20
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.63
Consensus pattern (24 bp):
TTTAGGATTATTATTTAATTTATC
Found at i:74150245 original size:23 final size:23
Alignment explanation
Indices: 74150219--74150265 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
74150209 ATTTATTTTT
74150219 TTGGAATTTAAGTAGGACTAGAC
1 TTGGAATTTAAGTAGGACTAGAC
74150242 TTGGAATTTAAGTAGGACTAGAC
1 TTGGAATTTAAGTAGGACTAGAC
74150265 T
1 T
74150266 ATCTTTCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.32
Consensus pattern (23 bp):
TTGGAATTTAAGTAGGACTAGAC
Found at i:74152038 original size:19 final size:18
Alignment explanation
Indices: 74151996--74152038 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
74151986 AAAAAAATAC
* *
74151996 CAAATCAAAATTAAAGTT
1 CAAAACAAAATTAAAGCT
74152014 CTAAAACAAAATTAAAAGCT
1 C-AAAACAAAATT-AAAGCT
74152034 CAAAA
1 CAAAA
74152039 GTCCGTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 14 0.67
20 6 0.29
ACGTcount: A:0.60, C:0.14, G:0.05, T:0.21
Consensus pattern (18 bp):
CAAAACAAAATTAAAGCT
Found at i:74155265 original size:41 final size:41
Alignment explanation
Indices: 74155215--74155319 Score: 122
Period size: 41 Copynumber: 2.6 Consensus size: 41
74155205 GTTAATTATT
* * * *
74155215 CCCTGAATTGCACATATGTGCCCCT-ATTTGTACTTCGGTAC
1 CCCTAAATTGCACATACGTGCCCATGA-TTGTACTTCGATAC
74155256 CCCTAAATTGCACATACGTGCCCATGATTGTACTTCGATAC
1 CCCTAAATTGCACATACGTGCCCATGATTGTACTTCGATAC
* * * *
74155297 CCTTGAATTGAACATGCGTGCCC
1 CCCTAAATTGCACATACGTGCCC
74155320 TGTTTACACT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 54 0.98
42 1 0.02
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (41 bp):
CCCTAAATTGCACATACGTGCCCATGATTGTACTTCGATAC
Found at i:74170628 original size:13 final size:13
Alignment explanation
Indices: 74170580--74170628 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
74170570 TAGCATTATA
*
74170580 TTTAAAAAATACT
1 TTTAAAAATTACT
* *
74170593 TTTAAAAAGTAAT
1 TTTAAAAATTACT
* *
74170606 TTTTAGAATTACT
1 TTTAAAAATTACT
74170619 TTTAAAAATT
1 TTTAAAAATT
74170629 TTGATTTAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (13 bp):
TTTAAAAATTACT
Found at i:74172233 original size:24 final size:23
Alignment explanation
Indices: 74172200--74172246 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
74172190 TTTTAAACTA
74172200 TTTATATTATTTAATAATTATATAT
1 TTTATATTA-TTAA-AATTATATAT
*
74172225 TTTAT-TTATTAAAATTTTATAT
1 TTTATATTATTAAAATTATATAT
74172247 ATAATTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 9 0.43
23 4 0.19
24 3 0.14
25 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTATATTATTAAAATTATATAT
Found at i:74174105 original size:116 final size:116
Alignment explanation
Indices: 74173901--74174113 Score: 338
Period size: 116 Copynumber: 1.8 Consensus size: 116
74173891 GAACAAGAGA
* *
74173901 AGGCGGCGTCAATCGGTTGAGAGAGCCAGATATTTAAAGGGGAAGAAATGAGAAGGTATAGGGTT
1 AGGCGGCGCCAATCGGTTAAGAGAGCCAGATATTTAAAGGGGAAGAAATGAGAAGGTATAGGGTT
* **
74173966 AAATTTTAGGTATTATGACAAATTTAACCTTTTACATCTTCTATCAATGGT
66 AAATATTAGGTACAATGACAAATTTAACCTTTTACATCTTCTATCAATGGT
*
74174017 AGGCGGCGGCCAA-CGGTTAAGATAGCCAGATATTTAAAGGGGAAGAAATGAGAAGGTATAGGGT
1 AGGCGGC-GCCAATCGGTTAAGAGAGCCAGATATTTAAAGGGGAAGAAATGAGAAGGTATAGGGT
* *
74174081 TTAATATTAGGTGCAATGACAAATTTAACCTTT
65 TAAATATTAGGTACAATGACAAATTTAACCTTT
74174114 AATTTTTATA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
116 84 0.95
117 4 0.05
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (116 bp):
AGGCGGCGCCAATCGGTTAAGAGAGCCAGATATTTAAAGGGGAAGAAATGAGAAGGTATAGGGTT
AAATATTAGGTACAATGACAAATTTAACCTTTTACATCTTCTATCAATGGT
Found at i:74174220 original size:32 final size:33
Alignment explanation
Indices: 74174155--74174222 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 33
74174145 TTTTTTATTG
* *
74174155 AATTTTATTCTCAATTTCTTTAAAAAAAATTTA
1 AATTTTACTATCAATTTCTTTAAAAAAAATTTA
* *
74174188 AATTTTACTATCAATTT-TTTAAAAACAGTTTA
1 AATTTTACTATCAATTTCTTTAAAAAAAATTTA
74174220 AAT
1 AAT
74174223 GTTTTTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.47
Consensus pattern (33 bp):
AATTTTACTATCAATTTCTTTAAAAAAAATTTA
Found at i:74178606 original size:11 final size:11
Alignment explanation
Indices: 74178592--74178640 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
74178582 TTTATTGTTT
*
74178592 TTTTTCTACTA
1 TTTTGCTACTA
74178603 TTTTGCTACTA
1 TTTTGCTACTA
* *
74178614 TTTTACTATTA
1 TTTTGCTACTA
*
74178625 TGTTGCTACTA
1 TTTTGCTACTA
74178636 TTTTG
1 TTTTG
74178641 TTGTTATTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.18, C:0.14, G:0.08, T:0.59
Consensus pattern (11 bp):
TTTTGCTACTA
Found at i:74178617 original size:22 final size:22
Alignment explanation
Indices: 74178592--74178639 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
74178582 TTTATTGTTT
* *
74178592 TTTTTCTACTATTTTGCTACTA
1 TTTTACTACTATGTTGCTACTA
*
74178614 TTTTACTATTATGTTGCTACTA
1 TTTTACTACTATGTTGCTACTA
74178636 TTTT
1 TTTT
74178640 GTTGTTATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.19, C:0.15, G:0.06, T:0.60
Consensus pattern (22 bp):
TTTTACTACTATGTTGCTACTA
Found at i:74181931 original size:12 final size:12
Alignment explanation
Indices: 74181910--74181940 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
74181900 ACTCGGGGAA
74181910 GAGGCCGTGGTC
1 GAGGCCGTGGTC
*
74181922 GAGGCTGTGGTC
1 GAGGCCGTGGTC
74181934 GAGGCCG
1 GAGGCCG
74181941 AGGTAGTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.52, T:0.16
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:74184670 original size:79 final size:81
Alignment explanation
Indices: 74184534--74184716 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
74184524 TCGAATGATG
* *
74184534 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
74184598 TTTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
74184613 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-CAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
74184675 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
74184693 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
74184717 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:74184725 original size:40 final size:40
Alignment explanation
Indices: 74184534--74184718 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
74184524 TCGAATGATG
* * * *
74184534 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
74184574 TCCGGACTAAGAT-CCGAAGGCATTTTTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74184614 TCCGGGCTAAG-CCCGAAGGCATTGGTGCCAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74184653 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74184694 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74184719 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 32 0.26
40 80 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74184740 original size:79 final size:79
Alignment explanation
Indices: 74184587--74184751 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
74184577 GGACTAAGAT
* * **
74184587 CCGAAGGCATTTTTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCCAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACCAGTTACTAA
*
74184652 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
74184666 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACCAGTTA-C
* *
74184729 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74184745 CCGAAGG
1 CCGAAGG
74184752 TATGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACCAGTTACTAA
ATCCGGGTTAAATC
Found at i:74194614 original size:15 final size:15
Alignment explanation
Indices: 74194575--74194654 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
74194565 GTATCTTGGG
*
74194575 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
74194590 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
74194605 TTTCTTTATT-TCGA
1 TTTCTTTATTCTGGA
*
74194619 GTTTCTCTA-TCTTGGA
1 -TTTCTTTATTC-TGGA
*
74194635 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
74194649 TTTCTT
1 TTTCTT
74194655 ATTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
14 12 0.23
15 36 0.68
16 5 0.09
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:74197093 original size:46 final size:46
Alignment explanation
Indices: 74197040--74197215 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
74197030 TATTTGGGCA
* *
74197040 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGGTGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * **
74197086 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAATAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT--G
* *
74197131 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74197179 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74197216 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.58
47 27 0.25
48 3 0.03
50 6 0.06
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74197195 original size:93 final size:93
Alignment explanation
Indices: 74197036--74197207 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
74197026 GGGATATTTG
* * * *
74197036 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGGTGCGAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
74197101 TTGAGTCCGAGTTCGTGAGATGTAAATA
66 TTGAGTCCGAGTTCGTGAGATGTAAATA
* * *
74197129 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
74197194 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
74197208 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAAATA
Found at i:74199435 original size:7 final size:7
Alignment explanation
Indices: 74199423--74199456 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
74199413 GGTTTCCTCC
74199423 CCATTTA
1 CCATTTA
74199430 CCATTTA
1 CCATTTA
74199437 CCATTTA
1 CCATTTA
74199444 CCATTTA
1 CCATTTA
74199451 CCATTT
1 CCATTT
74199457 TTCATTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.44
Consensus pattern (7 bp):
CCATTTA
Found at i:74199472 original size:5 final size:5
Alignment explanation
Indices: 74199462--74199531 Score: 77
Period size: 5 Copynumber: 13.4 Consensus size: 5
74199452 CATTTTTCAT
* * * *
74199462 TTTTA TTTTA TTTTA TTTTTA TTCTA ATTTA TTTTA TTTTA TTTTG TATTTC
1 TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA
74199514 TTTTA TTTTA CTTTTA TT
1 TTTTA TTTTA -TTTTA TT
74199532 ATTTTTTCAT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
5 41 0.75
6 14 0.25
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:74199479 original size:16 final size:16
Alignment explanation
Indices: 74199455--74199531 Score: 84
Period size: 16 Copynumber: 4.8 Consensus size: 16
74199445 CATTTACCAT
74199455 TTTTCATTTTTATTTTA
1 TTTT-ATTTTTATTTTA
*
74199472 TTTTATTTTTATTCTA
1 TTTTATTTTTATTTTA
*
74199488 ATTTA-TTTTATTTTA
1 TTTTATTTTTATTTTA
* * *
74199503 TTTTGTATTTCTTTTA
1 TTTTATTTTTATTTTA
*
74199519 TTTTACTTTTATT
1 TTTTATTTTTATT
74199532 ATTTTTTCAT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
15 12 0.25
16 32 0.67
17 4 0.08
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.75
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:74199492 original size:26 final size:26
Alignment explanation
Indices: 74199462--74199531 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
74199452 CATTTTTCAT
74199462 TTTTATTTTATTTTATTTT-TA-TTC
1 TTTTATTTTATTTTATTTTGTATTTC
74199486 TAATTTATTTTATTTTATTTTGTATTTC
1 T--TTTATTTTATTTTATTTTGTATTTC
74199514 TTTTATTTTACTTTTATT
1 TTTTATTTTA-TTTTATT
74199532 ATTTTTTCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
24 1 0.02
26 27 0.66
27 9 0.22
28 4 0.10
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (26 bp):
TTTTATTTTATTTTATTTTGTATTTC
Found at i:74199512 original size:21 final size:20
Alignment explanation
Indices: 74199455--74199536 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 20
74199445 CATTTACCAT
74199455 TTTTCATTTTTATTTTATTTTA
1 TTTT-ATTTTTA-TTTATTTTA
* *
74199477 TTTTTATTCTAATTTATTTTA
1 -TTTTATTTTTATTTATTTTA
*
74199498 TTTTATTTTGTATTTCTTTTA
1 TTTTATTTT-TATTTATTTTA
*
74199519 TTTTACTTTTA-TTATTTT
1 TTTTATTTTTATTTATTTT
74199537 TTCATATTAA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
19 6 0.12
20 10 0.20
21 26 0.51
22 5 0.10
23 4 0.08
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (20 bp):
TTTTATTTTTATTTATTTTA
Found at i:74199539 original size:26 final size:24
Alignment explanation
Indices: 74199462--74199539 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 24
74199452 CATTTTTCAT
*
74199462 TTTTATTTTATTTTATTTTTATTC
1 TTTTATTTTATTTTATTTTTTTTC
74199486 TAATTTATTTTATTTTATTTTGTATTTC
1 T--TTTATTTTATTTTATTTT-T-TTTC
74199514 TTTTATTTTACTTTTATTATTTTTTC
1 TTTTATTTTA-TTTTATT-TTTTTTC
74199540 ATATTAATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
24 1 0.02
26 31 0.66
27 9 0.19
28 6 0.13
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (24 bp):
TTTTATTTTATTTTATTTTTTTTC
Found at i:74199597 original size:13 final size:13
Alignment explanation
Indices: 74199579--74199607 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
74199569 ACTCTTTACT
74199579 GTTATTTTATTTA
1 GTTATTTTATTTA
74199592 GTTATTTTATTTA
1 GTTATTTTATTTA
74199605 GTT
1 GTT
74199608 TGGTTGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (13 bp):
GTTATTTTATTTA
Found at i:74212620 original size:27 final size:29
Alignment explanation
Indices: 74212596--74212650 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
74212586 TTGATGAATT
* *
74212596 TGAGTAATTT-GGG-CTAAATTGTGAAAA
1 TGAGAAATTTAGGGACTAAAATGTGAAAA
74212623 TGAGAAATTTAGGGACTAAAATGTGAAA
1 TGAGAAATTTAGGGACTAAAATGTGAAA
74212651 TAAATGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 9 0.38
28 3 0.12
29 12 0.50
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.29
Consensus pattern (29 bp):
TGAGAAATTTAGGGACTAAAATGTGAAAA
Found at i:74213202 original size:44 final size:41
Alignment explanation
Indices: 74213147--74213308 Score: 148
Period size: 43 Copynumber: 3.8 Consensus size: 41
74213137 TGATATCTTT
74213147 TTTCATGTAAGACCACGTCTGGGACATTGGCATCGACTTATGA
1 TTTCATGTAAGACCACGTCTGGGACATTGGCATCGA-TT-TGA
* * ***
74213190 TTTACGTGTAAGACCATGTCTGGGACATCAACATCGTATTTGA
1 TTT-CATGTAAGACCACGTCTGGGACATTGGCATCG-ATTTGA
*
74213233 TTTCATGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGA
1 TTTCATGTAAGACCAC-GTCTGGGACATTGGCATCG--ATTTGA
* ** *
74213276 TTACATGTTAA-ATTACGTCTGGGACGTTGGCAT
1 TTTCATG-TAAGACCACGTCTGGGACATTGGCAT
74213309 GTACGAGCTT
Statistics
Matches: 97, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
42 25 0.26
43 38 0.39
44 33 0.34
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (41 bp):
TTTCATGTAAGACCACGTCTGGGACATTGGCATCGATTTGA
Found at i:74213254 original size:42 final size:43
Alignment explanation
Indices: 74213147--74213258 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 43
74213137 TGATATCTTT
***
74213147 TTTCATGTAAGACCAC-GTCTGGGACATTGGCATCGACTTATGA
1 TTTCATGTAAGACC-CTGTCTGGGACATCAACATCGACTTATGA
* *
74213190 TTTACGTGTAAGACCATGTCTGGGACATCAACATCGTA-TT-TGA
1 TTT-CATGTAAGACCCTGTCTGGGACATCAACATCG-ACTTATGA
74213233 TTTCATGTAAGACCCTGTCTGGGACA
1 TTTCATGTAAGACCCTGTCTGGGACA
74213259 ATGGCATCGA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
42 21 0.36
43 9 0.15
44 28 0.47
45 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (43 bp):
TTTCATGTAAGACCCTGTCTGGGACATCAACATCGACTTATGA
Found at i:74218949 original size:27 final size:27
Alignment explanation
Indices: 74218919--74219096 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74218909 ATATTGAGTC
* * *
74218919 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
74218946 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74218973 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* ** * *
74219001 CGCACACTTAGTTCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74219028 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74219055 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74219082 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74219097 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74219058 original size:82 final size:81
Alignment explanation
Indices: 74218940--74219093 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 81
74218930 TGCTATATAA
* *
74218940 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74219005 CACTTAGTTCCGCATGG
65 CACTTAGTTCCGCATGG
* * **
74219022 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74219086 CACTTAGT
65 CACTTAGT
74219094 GCTGTACAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 14 0.22
82 51 0.78
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTTCCGCATGG
Found at i:74221012 original size:40 final size:40
Alignment explanation
Indices: 74220903--74221055 Score: 195
Period size: 40 Copynumber: 3.9 Consensus size: 40
74220893 GGGCTGTCAC
* *
74220903 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
74220943 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
74220982 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
74221023 A-CCGAGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
74221056 AGCTATATCC
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.34
40 63 0.64
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:74221070 original size:79 final size:79
Alignment explanation
Indices: 74220920--74221081 Score: 204
Period size: 79 Copynumber: 2.1 Consensus size: 79
74220910 CTAAGATCCA
* * *
74220920 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAATC
*
74220985 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * *
74220999 AAGGCATTTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAGCGAGTTA-CTAA
*
74221062 ATCC-GGTTAAATTCCG
63 ATCCGGGTTAAATCCCG
74221078 AAGG
1 AAGG
74221082 TATGTGATTC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAATC
CGGGTTAAATCCCG
Found at i:74224533 original size:39 final size:39
Alignment explanation
Indices: 74224477--74224770 Score: 311
Period size: 39 Copynumber: 7.4 Consensus size: 39
74224467 AATGAAATAT
* *
74224477 TGATTATACTAAATGCTTGCTTAAACGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* *
74224516 TAATTATACTGAATGCTTGCTCAGACGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* ** * * *
74224555 TGATTATATTGAATGCTT-CTTTAACGATCACTATCCAT
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
*
74224593 TGATTATACTGAATGTTTGAATGATTTCTCAAACGAGCATTATCCAC
1 TGATTATACTGAATG-CT---TG----CTCAAACGAGCATTATCCAC
* * * *
74224640 TAATTATATTGACTGCTTTCTCAAACGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* *
74224679 TGATTATACTGAATACTTGCTCAAATGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* * * * *
74224718 TGATTATACTTAATGCTTACTCAAACAAGCATTACCCAT
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
74224757 TGATTATACTGAAT
1 TGATTATACTGAAT
74224771 AAGATTTTTT
Statistics
Matches: 208, Mismatches: 38, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
38 28 0.13
39 150 0.72
42 1 0.00
43 1 0.00
46 1 0.00
47 27 0.13
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (39 bp):
TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
Found at i:74226285 original size:18 final size:17
Alignment explanation
Indices: 74226262--74226307 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
74226252 ATTTAAATTG
74226262 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCG-TTT
*
74226280 CGGTCGC-GTCACGTTT
1 CGGTCGCGGTCGCGTTT
74226296 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
74226308 GACATAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
16 3 0.12
17 5 0.20
18 7 0.28
ACGTcount: A:0.02, C:0.30, G:0.39, T:0.28
Consensus pattern (17 bp):
CGGTCGCGGTCGCGTTT
Found at i:74227670 original size:32 final size:32
Alignment explanation
Indices: 74227629--74227694 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
74227619 TAGAGTCCTC
74227629 TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
1 TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
74227661 TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
1 TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
74227693 TT
1 TT
74227695 CTTCTTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (32 bp):
TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
Found at i:74233736 original size:20 final size:20
Alignment explanation
Indices: 74233711--74233752 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
74233701 AAGTTAATTT
74233711 TTACGGATTAGTCCTTGATG
1 TTACGGATTAGTCCTTGATG
*
74233731 TTACGGATTAGTGCTTGATG
1 TTACGGATTAGTCCTTGATG
74233751 TT
1 TT
74233753 TTGTGTGCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.12, G:0.26, T:0.43
Consensus pattern (20 bp):
TTACGGATTAGTCCTTGATG
Found at i:74234670 original size:21 final size:21
Alignment explanation
Indices: 74234646--74234692 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
74234636 GCACACGCCT
74234646 GTGTGGAAGGGCAACATGCCC
1 GTGTGGAAGGGCAACATGCCC
74234667 GTGTGGAAGGGCAACATGCCC
1 GTGTGGAAGGGCAACATGCCC
74234688 GTGTG
1 GTGTG
74234693 TCATCTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.40, T:0.17
Consensus pattern (21 bp):
GTGTGGAAGGGCAACATGCCC
Found at i:74238544 original size:15 final size:15
Alignment explanation
Indices: 74238490--74238569 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
74238480 CAAAGATAAC
*
74238490 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
74238504 AAAAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
74238519 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
74238534 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
74238549 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
74238564 AAGAAA
1 AAGAAA
74238570 CCCAAGATAT
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
14 8 0.15
15 43 0.83
16 1 0.02
ACGTcount: A:0.60, C:0.12, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:74238578 original size:15 final size:15
Alignment explanation
Indices: 74238501--74238578 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
74238491 AGAAAACCGA
*
74238501 ATAAAAAAATCCAAG
1 ATAAAGAAATCCAAG
* *
74238516 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
74238530 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
74238545 AATAAAGAGATCTAGG
1 -ATAAAGAAATCCAAG
*
74238561 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
74238576 ATA
1 ATA
74238579 TGATACTATT
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 4 0.08
15 42 0.86
16 3 0.06
ACGTcount: A:0.58, C:0.14, G:0.15, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:74241856 original size:46 final size:47
Alignment explanation
Indices: 74241773--74241879 Score: 117
Period size: 46 Copynumber: 2.3 Consensus size: 47
74241763 TTGCACATAG
*
74241773 TCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTACAC-GGA
1 TCACATATCAC--ACCGAGGCCATAGCCCAGACATGGTCTTACACAGGA
* * * * * *
74241821 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTA
1 TCACATATCACACCGAGGCCATAGCCCAGACATGGTCTTACACAGGA
*
74241868 GCACATATCACA
1 TCACATATCACA
74241880 TTTCTCCGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
46 26 0.52
47 13 0.26
48 11 0.22
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (47 bp):
TCACATATCACACCGAGGCCATAGCCCAGACATGGTCTTACACAGGA
Found at i:74246996 original size:47 final size:47
Alignment explanation
Indices: 74246918--74247097 Score: 288
Period size: 47 Copynumber: 3.8 Consensus size: 47
74246908 CCCTTCGGGA
* * * * *
74246918 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74246965 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74247012 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74247059 CTTATCACATATATACACTTTCACATTCAGCACATCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC
74247098 NNNNNNNNNN
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74251319 original size:40 final size:40
Alignment explanation
Indices: 74251273--74251464 Score: 249
Period size: 40 Copynumber: 4.8 Consensus size: 40
74251263 TCAGCATGAT
* * * * *
74251273 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
74251313 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
74251353 TGCTCTTCGGAACTTTGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74251393 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74251433 TGCTCTTCGGGACTTAGCCCGGAGACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
74251465 CTCAATTCTC
Statistics
Matches: 130, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:74253099 original size:96 final size:94
Alignment explanation
Indices: 74252870--74253303 Score: 742
Period size: 96 Copynumber: 4.6 Consensus size: 94
74252860 CTCTTCGGGA
* * * * * * *
74252870 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
74252935 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
74252964 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
74253029 TTTCACATTCATCACATCGGCCATGAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
74253058 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
74253123 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
74253154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATATATAC
74253219 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
74253250 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
74253304 NTCAAATACA
Statistics
Matches: 325, Mismatches: 11, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
94 140 0.43
96 185 0.57
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:74253126 original size:143 final size:142
Alignment explanation
Indices: 74252870--74253303 Score: 755
Period size: 143 Copynumber: 3.0 Consensus size: 142
74252860 CTCTTCGGGA
* * * * * *
74252870 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGCCTTATCACATATATATAC
74252933 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
74252998 TCGGCCATTAGGC
130 TCGGCCATTAGGC
74253011 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATGAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCAT-AGGCCTTATCACATATATATAC
74253076 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
74253141 TCGGCCATTAGGC
130 TCGGCCATTAGGC
*
74253154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGCCTTATCACATATATATAC
74253219 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
74253284 TCGGCCATTAGGC
130 TCGGCCATTAGGC
*
74253297 ATTATCA
1 CTTATCA
74253304 NTCAAATACA
Statistics
Matches: 281, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
140 1 0.00
141 47 0.17
143 232 0.83
144 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATAGGCCTTATCACATATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:74253313 original size:47 final size:47
Alignment explanation
Indices: 74252870--74253303 Score: 742
Period size: 47 Copynumber: 9.1 Consensus size: 47
74252860 CTCTTCGGGA
* * * * * *
74252870 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74252917 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74252964 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74253011 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74253058 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74253107 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74253154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74253201 CTTATAACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74253250 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74253297 ATTATCA
1 CTTATCA
74253304 NTCAAATACA
Statistics
Matches: 370, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 278 0.75
49 92 0.25
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74259223 original size:31 final size:31
Alignment explanation
Indices: 74259188--74259250 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 31
74259178 TTGTTCAAAG
74259188 GATGTTTTAAATGAATAATGGC-GAAAGCTAT
1 GATGTTTTAAATGAATAATGGCAG-AAGCTAT
74259219 GATGTTTTAAATGAATAATGGCAGAAGCTAT
1 GATGTTTTAAATGAATAATGGCAGAAGCTAT
74259250 G
1 G
74259251 TAAAAAGGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (31 bp):
GATGTTTTAAATGAATAATGGCAGAAGCTAT
Found at i:74262490 original size:40 final size:40
Alignment explanation
Indices: 74262446--74262752 Score: 382
Period size: 40 Copynumber: 7.5 Consensus size: 40
74262436 TATTCGGATG
74262446 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
74262486 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
74262529 ATACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
74262569 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
74262612 ATACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
74262652 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
74262692 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
74262732 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
74262753 ATACTTGGGT
Statistics
Matches: 231, Mismatches: 30, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
39 12 0.05
40 147 0.64
41 1 0.00
43 71 0.31
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:74262589 original size:83 final size:83
Alignment explanation
Indices: 74262450--74262752 Score: 465
Period size: 83 Copynumber: 3.7 Consensus size: 83
74262440 CGGATGATAT
* * *
74262450 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
74262515 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
74262533 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
74262598 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
**
74262616 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
74262681 TGC---TAG-TGACTATAT
66 TGCGAGTAGTTG-CTATAC
* * *
74262696 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAG
74262753 ATACTTGGGT
Statistics
Matches: 209, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
79 16 0.08
80 45 0.22
81 2 0.01
83 146 0.70
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (83 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTAGTTGCTATAC
Found at i:74262665 original size:123 final size:124
Alignment explanation
Indices: 74262446--74262727 Score: 421
Period size: 123 Copynumber: 2.3 Consensus size: 124
74262436 TATTCGGATG
* *
74262446 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATATCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCAAAG
**
74262508 GCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
66 GCATTTGTGC--GTAGTTGCTATACCCGGGCTAAGTCCCAAAGGCATTCATGCTAGTGACT
*
74262569 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCAAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCAAAG
* *
74262634 GCATTTGTGC-TAG-TGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
66 GCATTTGTGCGTAGTTG-CTATACCCGGGCTAAGTCCCAAAGGCATTCATGCTAGTGACT
* *
74262692 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
74262728 TGCTATATCC
Statistics
Matches: 146, Mismatches: 9, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
122 2 0.01
123 107 0.73
124 1 0.01
126 36 0.25
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (124 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCAAAG
GCATTTGTGCGTAGTTGCTATACCCGGGCTAAGTCCCAAAGGCATTCATGCTAGTGACT
Found at i:74267242 original size:22 final size:21
Alignment explanation
Indices: 74267192--74267232 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
74267182 ATGTTCAAAT
74267192 TTTTTTTTTCAATTTTTTTAAC
1 TTTTTTTTTCAATTTTTTT-AC
*
74267214 TTTTTTTTTGAATTTTTTT
1 TTTTTTTTTCAATTTTTTT
74267233 CGTATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (21 bp):
TTTTTTTTTCAATTTTTTTAC
Found at i:74267487 original size:31 final size:31
Alignment explanation
Indices: 74267449--74267511 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
74267439 TTGTTCAAAG
74267449 GATGTTTTAAATGAATAATGGCGGAAGCTAT
1 GATGTTTTAAATGAATAATGGCGGAAGCTAT
74267480 GATGTTTTAAATGAATAATGGCGGAAGCTAT
1 GATGTTTTAAATGAATAATGGCGGAAGCTAT
74267511 G
1 G
74267512 TAAAAAGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (31 bp):
GATGTTTTAAATGAATAATGGCGGAAGCTAT
Found at i:74285807 original size:24 final size:24
Alignment explanation
Indices: 74285780--74285829 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
74285770 CATGCATCGA
*
74285780 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
74285804 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
74285828 CA
1 CA
74285830 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:74296637 original size:40 final size:40
Alignment explanation
Indices: 74296582--74296738 Score: 244
Period size: 40 Copynumber: 3.9 Consensus size: 40
74296572 GCATGAGCAT
*
74296582 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG
* *
74296622 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG
74296662 TTGATATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAG
* * *
74296702 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGC
74296739 TTGCGGTTAT
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.03
40 101 0.94
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG
Found at i:74296680 original size:80 final size:80
Alignment explanation
Indices: 74296582--74296734 Score: 270
Period size: 80 Copynumber: 1.9 Consensus size: 80
74296572 GCATGAGCAT
* *
74296582 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGA
74296647 AGGCAATTATGCAAG
66 AGGCAATTATGCAAG
* *
74296662 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGA
74296727 AGGCAATT
66 AGGCAATT
74296735 GTGCTTGCGG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGA
AGGCAATTATGCAAG
Found at i:74296750 original size:80 final size:80
Alignment explanation
Indices: 74296584--74296758 Score: 253
Period size: 80 Copynumber: 2.2 Consensus size: 80
74296574 ATGAGCATTT
* *
74296584 GATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAG
**
74296649 GCAATTATGCAAGTT
66 GCAATTATGCAAGCG
* *
74296664 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAG
* **
74296729 GCAATTGTGCTTGCG
66 GCAATTATGCAAGCG
*
74296744 GTTATATCC-GGCTAA
1 GATATATCCGGGCTAA
74296759 ATTTCGAAGA
Statistics
Matches: 85, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 6 0.07
80 79 0.93
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAG
GCAATTATGCAAGCG
Found at i:74302438 original size:31 final size:31
Alignment explanation
Indices: 74302361--74302457 Score: 90
Period size: 31 Copynumber: 3.1 Consensus size: 31
74302351 ATTGATAAAC
* * * * *
74302361 CATCATCCTCGGGCAATCTAGGATGGTAAGC
1 CATCATCCTCGGGCAATCCAGGGTGGCATGT
* *
74302392 CATCGTCAC-CAGGCAATCCAGGGTGGCATGT
1 CATCATC-CTCGGGCAATCCAGGGTGGCATGT
*
74302423 CATCATCCTCGGGCAATCC-GGGATGACATGT
1 CATCATCCTCGGGCAATCCAGGG-TGGCATGT
74302454 CATC
1 CATC
74302458 GTTTCCAGTT
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
30 4 0.08
31 48 0.91
32 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (31 bp):
CATCATCCTCGGGCAATCCAGGGTGGCATGT
Found at i:74315858 original size:62 final size:61
Alignment explanation
Indices: 74315782--74315903 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 61
74315772 CATTTAATGC
*
74315782 TTAGTAAGTTTTGAGTAACGAAATTATTTACGACTAAAGTATATCGTTCATATGACTAAATA
1 TTAGTAAGTTTTGAGTAACGAAATTATTTACGACTAAAGT-TAGCGTTCATATGACTAAATA
*
74315844 TTAGTAAGTTTTGAGTAACGAAATTATTTACGACTACAGTTAGCGTTCATATGACTAAAT
1 TTAGTAAGTTTTGAGTAACGAAATTATTTACGACTAAAGTTAGCGTTCATATGACTAAAT
74315904 GAATAATTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
61 19 0.33
62 39 0.67
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (61 bp):
TTAGTAAGTTTTGAGTAACGAAATTATTTACGACTAAAGTTAGCGTTCATATGACTAAATA
Found at i:74316345 original size:204 final size:204
Alignment explanation
Indices: 74315995--74316399 Score: 774
Period size: 204 Copynumber: 2.0 Consensus size: 204
74315985 CTAACTAGAG
74315995 GCCGGAAGCTCGTTAATCAATTGAGCCAGTACTATTTGAAAGGAATCAACCTTTCCGATGCATAT
1 GCCGGAAGCTCGTTAATCAATTGAGCCAGTACTATTTGAAAGGAATCAACCTTTCCGATGCATAT
* *
74316060 ACGAAACATACCTTATCGTTTGTATTTTATGAGCGTGTTAATTGAAATTATTACAGCAAGATCGC
66 ACGAAACATACCTTATCGTTTGTATTTTATGAGCGTATTAATTAAAATTATTACAGCAAGATCGC
*
74316125 TCGCTTCCAAACCCAAGTATCTTCGGGATTTAGCCGGATATAGCAACTTGCACAAATGCCTTCGG
131 TCGCTTCCAAACCCAAGTATCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGG
74316190 GTCTTAGCT
196 GTCTTAGCT
74316199 GCCGGAAGCTCGTTAATCAATTGAGCCAGTACTATTTGAAAGGAATCAACCTTTCCGATGCATAT
1 GCCGGAAGCTCGTTAATCAATTGAGCCAGTACTATTTGAAAGGAATCAACCTTTCCGATGCATAT
74316264 ACGAAACATACCTTATCGTTTGTATTTTATGAGCGTATTAATTAAAATTATTACAGCAAGATCGC
66 ACGAAACATACCTTATCGTTTGTATTTTATGAGCGTATTAATTAAAATTATTACAGCAAGATCGC
*
74316329 TCGCTTCCAAACCCAAGTATCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTTGG
131 TCGCTTCCAAACCCAAGTATCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGG
74316394 GTCTTA
196 GTCTTA
74316400 TCCCGGATAT
Statistics
Matches: 197, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
204 197 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (204 bp):
GCCGGAAGCTCGTTAATCAATTGAGCCAGTACTATTTGAAAGGAATCAACCTTTCCGATGCATAT
ACGAAACATACCTTATCGTTTGTATTTTATGAGCGTATTAATTAAAATTATTACAGCAAGATCGC
TCGCTTCCAAACCCAAGTATCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGG
GTCTTAGCT
Found at i:74316427 original size:40 final size:40
Alignment explanation
Indices: 74316349--74316572 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
74316339 ACCCAAGTAT
* *
74316349 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * **
74316388 CTTTGGGTCTTATCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
74316428 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
74316468 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
74316511 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
74316551 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
74316573 CATCCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 10 0.06
40 115 0.71
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:74316531 original size:83 final size:80
Alignment explanation
Indices: 74316349--74316572 Score: 292
Period size: 83 Copynumber: 2.8 Consensus size: 80
74316339 ACCCAAGTAT
* * * * *
74316349 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTTGGGTCTTATCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
74316412 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
*
74316428 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
74316492 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
74316511 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
74316573 CATCCGAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
79 13 0.10
80 47 0.37
81 1 0.01
83 67 0.52
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:74323482 original size:40 final size:40
Alignment explanation
Indices: 74323427--74323998 Score: 1081
Period size: 40 Copynumber: 14.2 Consensus size: 40
74323417 NNNNNNNNNN
74323427 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323467 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323507 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323547 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323587 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323627 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323667 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323707 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323747 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323787 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323827 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
74323867 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
* * *
74323907 CCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACT--T-GCACAAATGCCTTCGGGACTTAG
74323950 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
1 CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
*
74323990 CCCGGATAT
1 CCCAGATAT
74323999 CATCCAAATA
Statistics
Matches: 522, Mismatches: 7, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
40 484 0.93
41 1 0.00
42 1 0.00
43 36 0.07
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
CCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG
Found at i:74335553 original size:46 final size:46
Alignment explanation
Indices: 74335456--74335625 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
74335446 TATGAGAGCC
* * *
74335456 AGTGTAAGACCATGTCTGGGACAGGGCATCGACATTGAGACG-AGTGCT
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGGC-CTGAGACGTA-TGCT
* *
74335504 AGTGTAAGA-CATGTCTGGGACATGCTTCGGCCTCGAGACGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-GAGACGTATGCT
* * * *
74335550 AGTGTAAGA-CATGTCTGGGACGTGCATCGG-CT-ATAAGATATGTT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTGAGACG-TATGCT
74335594 AGTGTAAGACCATGTCTGGGACATGACATCGG
1 AGTGTAAGACCATGTCTGGGACATG-CATCGG
74335626 TATCTGACCC
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
43 3 0.03
44 13 0.12
45 17 0.16
46 49 0.47
47 14 0.13
48 9 0.09
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTGAGACGTATGCT
Found at i:74336536 original size:17 final size:18
Alignment explanation
Indices: 74336501--74336538 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
74336491 GATGAACACG
74336501 GCCTAGCCCACGGGGGTGT
1 GCCTAGCCCAC-GGGGTGT
74336520 GCCTAGCCCAC-GGGTGT
1 GCCTAGCCCACGGGGTGT
74336537 GC
1 GC
74336539 ATTTAGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.42
19 11 0.58
ACGTcount: A:0.11, C:0.34, G:0.39, T:0.16
Consensus pattern (18 bp):
GCCTAGCCCACGGGGTGT
Found at i:74337419 original size:14 final size:13
Alignment explanation
Indices: 74337397--74337426 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
74337387 TAGTTAATAT
74337397 TTTAATAATTTAA
1 TTTAATAATTTAA
74337410 TTTAATTAATTTAA
1 TTTAA-TAATTTAA
74337424 TTT
1 TTT
74337427 TTTAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTAATAATTTAA
Found at i:74339981 original size:37 final size:37
Alignment explanation
Indices: 74339940--74340059 Score: 95
Period size: 37 Copynumber: 3.2 Consensus size: 37
74339930 ATAAAATTAG
74339940 AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
1 AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
* * * * * *
74339977 AATTATATAGAACTCTTGATAATCCGATAAAATTT--AA-A-AA
1 AATTAT-T-G--GT-GTAATTAT--TATAAATTTTAAAAGATAA
74340017 AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
1 AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
74340054 AATTAT
1 AATTAT
74340060 ATACAACTCA
Statistics
Matches: 60, Mismatches: 12, Indels: 22
0.64 0.13 0.23
Matches are distributed among these distances:
33 8 0.13
35 7 0.12
36 2 0.03
37 14 0.23
38 2 0.03
39 2 0.03
40 8 0.13
41 2 0.03
42 7 0.12
44 8 0.13
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.40
Consensus pattern (37 bp):
AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
Done.