Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 224 of 276
Found at i:74656365 original size:24 final size:24
Alignment explanation
Indices: 74656338--74656386 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
74656328 CGTATATTTA
*
74656338 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
74656362 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
74656386 T
1 T
74656387 GTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:74656607 original size:22 final size:21
Alignment explanation
Indices: 74656574--74656620 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
74656564 AGAATTATTT
74656574 AAAATTAATATAAAAGA-TATA
1 AAAATTAATATAAAA-ATTATA
74656595 AAAATTCAATATAAAAATTATA
1 AAAATT-AATATAAAAATTATA
74656617 AAAA
1 AAAA
74656621 AGTCAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (21 bp):
AAAATTAATATAAAAATTATA
Found at i:74656662 original size:40 final size:40
Alignment explanation
Indices: 74656618--74656701 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
74656608 AAAATTATAA
*
74656618 AAAAGTCAA-AAATTAGCGGCGTTTATGATAAAAACGCCGC
1 AAAAGGCAATAAA-TAGCGGCGTTTATGATAAAAACGCCGC
* *
74656658 AAAAGGCAATCAATAGCGGCGTTTATGATAAAAACGTCGC
1 AAAAGGCAATAAATAGCGGCGTTTATGATAAAAACGCCGC
74656698 AAAA
1 AAAA
74656702 AGTAATTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 38 0.95
41 2 0.05
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (40 bp):
AAAAGGCAATAAATAGCGGCGTTTATGATAAAAACGCCGC
Found at i:74669787 original size:33 final size:33
Alignment explanation
Indices: 74669750--74669850 Score: 202
Period size: 33 Copynumber: 3.1 Consensus size: 33
74669740 TTCTTTCAAA
74669750 TATTAATAACTTTCTATTATTAAATAATATTCT
1 TATTAATAACTTTCTATTATTAAATAATATTCT
74669783 TATTAATAACTTTCTATTATTAAATAATATTCT
1 TATTAATAACTTTCTATTATTAAATAATATTCT
74669816 TATTAATAACTTTCTATTATTAAATAATATTCT
1 TATTAATAACTTTCTATTATTAAATAATATTCT
74669849 TA
1 TA
74669851 CTACTATATT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 68 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (33 bp):
TATTAATAACTTTCTATTATTAAATAATATTCT
Found at i:74670392 original size:43 final size:43
Alignment explanation
Indices: 74670305--74670394 Score: 126
Period size: 43 Copynumber: 2.1 Consensus size: 43
74670295 ATTGGAAAAG
** *
74670305 CGCCGCTAAAAGTCACGGCTTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGTCACGGCTTTTAAAGGCGCTTTTCCAACAAA
* * *
74670348 CGCCGCTAAAAGTCACGGCTTTTAAAGGCGTTTTTTCAATAAA
1 CGCCGCTAAAAGTCACGGCTTTTAAAGGCGCTTTTCCAACAAA
74670391 CGCC
1 CGCC
74670395 ACAAAGTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAAGTCACGGCTTTTAAAGGCGCTTTTCCAACAAA
Found at i:74675186 original size:22 final size:20
Alignment explanation
Indices: 74675161--74675200 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
74675151 AAATTTAATA
*
74675161 TTGAAAGTGCAAAAAGAAAAAG
1 TTGAAAATG-AAAAA-AAAAAG
74675183 TTGAAAATGAAAAAAAAA
1 TTGAAAATGAAAAAAAAA
74675201 CGTAAAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.65, C:0.03, G:0.17, T:0.15
Consensus pattern (20 bp):
TTGAAAATGAAAAAAAAAAG
Found at i:74676348 original size:25 final size:25
Alignment explanation
Indices: 74676304--74676358 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
74676294 CTTCCGTGTT
*
74676304 TATTTTTTAAATTTACT-AAATAATA
1 TATTTTATAAATTTACTAAAAT-ATA
**
74676329 TATTTTATAAATTTTTTAAAATATA
1 TATTTTATAAATTTACTAAAATATA
74676354 TATTT
1 TATTT
74676359 GTTAATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (25 bp):
TATTTTATAAATTTACTAAAATATA
Found at i:74679840 original size:16 final size:16
Alignment explanation
Indices: 74679799--74679840 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
74679789 AAATCTATCT
* **
74679799 AATTTATTTAAATTTA
1 AATTTATTTGAATCCA
74679815 AATTTATTTGAATCCA
1 AATTTATTTGAATCCA
74679831 AATTTATTTG
1 AATTTATTTG
74679841 GACATATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (16 bp):
AATTTATTTGAATCCA
Found at i:74686596 original size:30 final size:31
Alignment explanation
Indices: 74686553--74686617 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 31
74686543 TATTAGTATT
74686553 ACTAATACATAAAATAATATT-ATA-ATATATA
1 ACTAATACAT-AAA-AATATTAATACATATATA
*
74686584 ACTATTAC-TAAAAATATTAATACATATATA
1 ACTAATACATAAAAATATTAATACATATATA
74686614 ACTA
1 ACTA
74686618 CAATTATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
28 6 0.19
29 6 0.19
30 12 0.39
31 7 0.23
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.35
Consensus pattern (31 bp):
ACTAATACATAAAAATATTAATACATATATA
Found at i:74693849 original size:7 final size:7
Alignment explanation
Indices: 74693839--74693871 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
74693829 GAAAAAAGAA
74693839 AAAATTG
1 AAAATTG
74693846 AAAATTG
1 AAAATTG
74693853 AAAATTG
1 AAAATTG
*
74693860 AAAAATG
1 AAAATTG
74693867 AAAAT
1 AAAAT
74693872 AAAATTGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (7 bp):
AAAATTG
Found at i:74693863 original size:21 final size:19
Alignment explanation
Indices: 74693838--74693878 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 19
74693828 TGAAAAAAGA
74693838 AAAAATTGAAAATTGAAAATTG
1 AAAAA-TGAAAA-T-AAAATTG
74693860 AAAAATGAAAATAAAATTG
1 AAAAATGAAAATAAAATTG
74693879 TTCTCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 1 0.05
21 6 0.32
22 5 0.26
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (19 bp):
AAAAATGAAAATAAAATTG
Found at i:74698525 original size:47 final size:46
Alignment explanation
Indices: 74698410--74698672 Score: 248
Period size: 46 Copynumber: 5.7 Consensus size: 46
74698400 ATTCGTGTAT
* * ** *
74698410 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGCTACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACTTGA-GATGA
* * *
74698456 GAGCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGAC-TTGAGATGA
* *
74698504 GGGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTTGAGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGA-CTTGAGATG-A
* *
74698551 -AGCCAGTGTAAGA-CATGTCTGGGACATGCATTGACTATGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACT-TGAGATGA
* * * *
74698596 TA-ATCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAA
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGACTTGAGATGA
* * *
74698643 GAGCCAGTGTAAGACCGTGTCTAGGACATG
1 GAGCTAGTGTAAGACCATGTCTGGGACATG
74698673 GCATTGGCAC
Statistics
Matches: 182, Mismatches: 24, Indels: 22
0.80 0.11 0.10
Matches are distributed among these distances:
45 3 0.02
46 75 0.41
47 71 0.39
48 31 0.17
49 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACTTGAGATGA
Found at i:74698664 original size:140 final size:140
Alignment explanation
Indices: 74698415--74698672 Score: 342
Period size: 140 Copynumber: 1.8 Consensus size: 140
74698405 TGTATGAGCT
* * * *
74698415 AGTGTAAGACATGTCTGGGACATGCATTGGCTACATTATGAGAGCTAGTGTAAGACCAAGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATTGACTACATGATGAAAGCTAATGTAAGACCAAGTCTGG
* * * * *
74698480 GACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGA
66 GACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTTGA
74698545 GACGTAAGCC
131 GACGTAAGCC
* * *
74698555 AGTGTAAGACATGTCTGGGACATGCATTGACTATGA-GATGATAATC-AATGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATTGACTA-CATGATGA-AAGCTAATGTAAGACCAAGTCT
* *
74698618 GGGACATGGCATCGAC-TTGAGATAAGAGCCAGTGTAAGACCGTGTCTAGGACATG
64 GGGACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGA-CATGTCTAGGACATG
74698673 GCATTGGCAC
Statistics
Matches: 101, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
139 19 0.19
140 79 0.78
141 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATTGACTACATGATGAAAGCTAATGTAAGACCAAGTCTGG
GACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTTGA
GACGTAAGCC
Found at i:74698673 original size:47 final size:47
Alignment explanation
Indices: 74698410--74698676 Score: 251
Period size: 47 Copynumber: 5.7 Consensus size: 47
74698400 ATTCGTGTAT
* * * ** *
74698410 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-GATGA
* * * *
74698456 GAGCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATGA
* * *
74698504 GGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTTGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGAGATG-A
*
74698551 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGACTATGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGATGA
* ** * *
74698596 TAATCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGA
* *
74698643 GAGCCAGTGTAAGACCGTGTCTAGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
74698677 TGGCACCTTA
Statistics
Matches: 188, Mismatches: 24, Indels: 17
0.82 0.10 0.07
Matches are distributed among these distances:
45 3 0.02
46 75 0.40
47 77 0.41
48 31 0.16
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGA
Found at i:74699658 original size:22 final size:22
Alignment explanation
Indices: 74699615--74699656 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
74699605 TGTTGGAATG
*
74699615 CTCACACGAGTGTGTTGCCCCT
1 CTCACACGAGCGTGTTGCCCCT
*
74699637 CTCACACGGGCGTG-TGCCCC
1 CTCACACGAGCGTGTTGCCCC
74699657 CTGTGTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.26, T:0.21
Consensus pattern (22 bp):
CTCACACGAGCGTGTTGCCCCT
Found at i:74700987 original size:82 final size:82
Alignment explanation
Indices: 74700850--74701016 Score: 282
Period size: 82 Copynumber: 2.0 Consensus size: 82
74700840 AAGAAGAGAC
* * *
74700850 AGATGGGGAAATCACATCAGTTCTCTTCAAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
1 AGATGGGGAAATCACATCAATCCTCATCAAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
74700915 TC-AGTGGGTTTTCTAAT
66 TCGA-TGGGTTTTCTAAT
*
74700932 AGATGGGGAAATCACATCAATCCTCATCTAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
1 AGATGGGGAAATCACATCAATCCTCATCAAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
74700997 TCGATGGGTTTTCTAAT
66 TCGATGGGTTTTCTAAT
74701014 AGA
1 AGA
74701017 AACAAGAACC
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
82 79 0.99
83 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (82 bp):
AGATGGGGAAATCACATCAATCCTCATCAAAAAGATCAAGAGAGTTTACTACCCGATCGAATGCT
TCGATGGGTTTTCTAAT
Found at i:74706143 original size:36 final size:36
Alignment explanation
Indices: 74706100--74706173 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
74706090 GCCTGAAATG
*
74706100 AATGACATGATTTTGACGATGTTGCTATGATGATGA
1 AATGACATCATTTTGACGATGTTGCTATGATGATGA
74706136 AATGACATCATTTTGACGATGTTGCTATGATGATGA
1 AATGACATCATTTTGACGATGTTGCTATGATGATGA
74706172 AA
1 AA
74706174 GTTGTGTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.35
Consensus pattern (36 bp):
AATGACATCATTTTGACGATGTTGCTATGATGATGA
Found at i:74709330 original size:30 final size:30
Alignment explanation
Indices: 74709295--74709351 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
74709285 TTTATGAGTC
74709295 TAGGGGCAAAAA-TGTAATTTTGACAAAGTT
1 TAGGGG-AAAAATTGTAATTTTGACAAAGTT
*
74709325 TAGGGGAAAAATTGTAATTTTGCCAAA
1 TAGGGGAAAAATTGTAATTTTGACAAA
74709352 ATATGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAATTGTAATTTTGACAAAGTT
Found at i:74709734 original size:20 final size:19
Alignment explanation
Indices: 74709711--74709751 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
74709701 TACTTGATAA
74709711 ATATGAAATGCTACCAAGT
1 ATATGAAATGCTACCAAGT
*
74709730 NATATGAAATGCTATCAAGT
1 -ATATGAAATGCTACCAAGT
74709750 AT
1 AT
74709752 CGGTTCTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.29
Consensus pattern (19 bp):
ATATGAAATGCTACCAAGT
Found at i:74715230 original size:46 final size:47
Alignment explanation
Indices: 74715172--74715396 Score: 190
Period size: 47 Copynumber: 4.8 Consensus size: 47
74715162 ATTCGTGTGT
* *
74715172 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-GATGA
* * ** **
74715218 GAGCCAGTGTAAGACCAAGTCTGGGACATGGCATTGGCATTGAGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACAGATGA
* *
74715266 GGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC-AGATGA
* ** * * **
74715312 TAATCAGTGTGAGACCATGTCTGGGACATGGCATCGACTTGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAGATGA
* * * *
74715358 TGAGCCAGTGTAAGATCGTGTTTAGGACATGGCATCGGC
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
74715397 ACCTTATCCT
Statistics
Matches: 138, Mismatches: 34, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
45 1 0.01
46 33 0.24
47 73 0.53
48 29 0.21
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAGATGA
Found at i:74715386 original size:94 final size:94
Alignment explanation
Indices: 74715171--74715396 Score: 283
Period size: 94 Copynumber: 2.4 Consensus size: 94
74715161 CATTCGTGTG
** *
74715171 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCAA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAA
* *
74715236 GTCTGGGACATGGCATTGGCATTGAGACA
66 GTCTGGGACATGGCATCGACATTGAGACA
* * * * * *
74715265 AGGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAATCAGTGTGAGACCAT
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAA
*
74715330 GTCTGGGACATGGCATCGAC-TTGAGATA
66 GTCTGGGACATGGCATCGACATTGAGACA
* * * *
74715358 TGAGCCAGTGTAAGATCGTGTTTAGGACATGGCATCGGC
1 TGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
74715397 ACCTTATCCT
Statistics
Matches: 112, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
93 19 0.17
94 85 0.76
95 8 0.07
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (94 bp):
TGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAACCAGTGTAAGACCAA
GTCTGGGACATGGCATCGACATTGAGACA
Found at i:74716381 original size:21 final size:22
Alignment explanation
Indices: 74716342--74716382 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
74716332 TTGGAATGCT
*
74716342 CACATGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
74716364 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
74716383 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:74719116 original size:47 final size:45
Alignment explanation
Indices: 74718956--74719318 Score: 259
Period size: 47 Copynumber: 7.8 Consensus size: 45
74718946 GGGATATATT
* *
74718956 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATGT--GAG
** * * * *
74719005 TGCTAATGCGTGTCCCAGACATGTCTTACACTAGC-A-CAACTCTTA-
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC-A-TGTGAG
* * *
74719050 GCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATCACTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCA-TGT-GAG
* * **
74719097 GCTGATGCATGTCCCAGACATGTCGTACACTGGC-ACTCATGTCTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATGTGAG
*
74719142 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-ATA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCAT-GTGA-G
* * * ** * * *
74719191 GCTGATACATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATGT-GAG
* * *
74719237 GCCGATGCTATGTCCCAGACATGCTCTTACACTGGCTTTCATAATGTG
1 GCCGATGC-ATGTCCCAGACATG-TCTTACACTGGCTATCAT-GTGAG
* *
74719285 GCCGAAGCATGTCCCAGACACGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
74719319 GCACAAAACA
Statistics
Matches: 251, Mismatches: 44, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
44 29 0.12
45 7 0.03
46 47 0.19
47 89 0.35
48 57 0.23
49 17 0.07
50 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATGTGAG
Found at i:74719202 original size:94 final size:94
Alignment explanation
Indices: 74718955--74719315 Score: 382
Period size: 94 Copynumber: 3.9 Consensus size: 94
74718945 TGGGATATAT
* * * *
74718955 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGAGTGCTAATGCGTGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA-GAG-GCTGATACATGTC
* *
74719019 CCAGACATGTCTTACACTAGCAC-AACTCT-
64 CCAGACATGTCTTACACTAGCACTCAGTCTG
* * * * *
74719048 TAGCCGATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATCACT-GTCGAGGCTGATGCATGTC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-TAGTAGAGGCTGATACATGTC
* *
74719110 CCAGACATGTCGTACACTGGCACTCATGTCTG
64 CCAGACATGTCTTACACTAGCACTCA-GTCTG
*
74719142 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATA-GCTGATACATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTAGAGGCTGATACATGTCCC
*
74719206 AGACATGTCTTACACTAGCCCTC-GTCTGG
66 AGACATGTCTTACACTAGCACTCAGTCT-G
* * * * * *
74719235 ATGCCGATGCTATGTCCCAGACATGCTCTTACACTGGCTTTCATAAT-GTGGCCGA-AGCATGTC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTAGAGGCTGATA-CATGTC
*
74719298 CCAGACACGTCTTACACT
64 CCAGACATGTCTTACACT
74719316 GGCGCACAAA
Statistics
Matches: 227, Mismatches: 28, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
91 32 0.14
92 25 0.11
93 26 0.11
94 123 0.54
95 21 0.09
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTAGAGGCTGATACATGTCCC
AGACATGTCTTACACTAGCACTCAGTCTG
Found at i:74719220 original size:141 final size:135
Alignment explanation
Indices: 74718956--74719318 Score: 343
Period size: 141 Copynumber: 2.6 Consensus size: 135
74718946 GGGATATATT
* ** *
74718956 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGAGTGCTAATGCGTGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-T-C-TGTGCCGATGCATGTCCC
* * * * * * *
74719021 AGACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCTAGACACGTCTTACACTGGCTA
61 AGACATGTCTTACACTGGCACAACTCATAGCCGATACATGTCCCAGACACGTCTTACACTAGCCA
74719086 TC-ACTGTCGAG
126 TCGACTG--GAG
* * *
74719097 GCTGATGCATGTCCCAGACATGTCGTACACTGGCACTCATGTCTGTGCCGATGCCATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-TCTGTGCCGATG-CATGTCCCAGA
* * *
74719162 CATGGTCTTACACTGGCTATCATAGT-ATAGCTGATACATGTCCCAGACATGTCTTACACTAGCC
64 CAT-GTCTTACACTGGC-A-CA-ACTCATAGCCGATACATGTCCCAGACACGTCTTACACTAGCC
* * *
74719226 CTCGTCTGGAT
125 ATCGACTGGAG
* ** *
74719237 GCCGATGCTATGTCCCAGACATGCTCTTACACTGGCTTTCATAATGTGGCCGAAGCATGTCCCAG
1 GCCGATGC-ATGTCCCAGACATG-TCTTACACTGGCTCTCATTCTGT-GCCGATGCATGTCCCAG
*
74719302 ACACGTCTTACACTGGC
63 ACATGTCTTACACTGGC
74719319 GCACAAAACA
Statistics
Matches: 184, Mismatches: 29, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
137 7 0.04
138 14 0.08
139 30 0.16
140 37 0.20
141 70 0.38
142 26 0.14
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (135 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTCTGTGCCGATGCATGTCCCAGACA
TGTCTTACACTGGCACAACTCATAGCCGATACATGTCCCAGACACGTCTTACACTAGCCATCGAC
TGGAG
Found at i:74728427 original size:26 final size:26
Alignment explanation
Indices: 74728396--74728529 Score: 250
Period size: 26 Copynumber: 5.2 Consensus size: 26
74728386 TGAAATGCCC
*
74728396 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
74728422 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74728448 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
74728474 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
74728500 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74728526 ATCA
1 ATCA
74728530 ATTTGTACCA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74730005 original size:123 final size:123
Alignment explanation
Indices: 74729658--74730142 Score: 519
Period size: 123 Copynumber: 4.0 Consensus size: 123
74729648 GTTTTGAATA
* ** * * * * * * *
74729658 AAACACCACTAAAAACTGAGCAATAGCGACATTTTTGGTCAAAACGCCACTAAGAACCGAGCAAT
1 AAACGCCACTAAAAACCAAGCATTAGCGGCATTTCTGATCATAACGCCATTAAAAACCGAGCAAT
* ** * * * *
74729723 AGCGGCATTT-TGAAT-AAAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
66 AGTGGTGTTTCT-AGTCCAAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTGGTCC
* * * ** * *
74729780 AAACGCCACTAAGAATCGAGCATTAGCATCATTTCTGATCCTAA-GCCACTAAAAACCGAGCAAT
1 AAACGCCACTAAAAACCAAGCATTAGCGGCATTTCTGATCATAACGCCATTAAAAACCGAGCAAT
* ** *
74729844 AGTGGTGTTTCTAATCCAAACGCCACTAAAAACCGAGCAATAGTAGTGTTTCTGGTCC
66 AGTGGTGTTTCTAGTCCAAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTGGTCC
* *
74729902 AAATGCCACTAAAAACCAAGCATTAGCGGCATTTCTGATCATAACGCCATTAAAAACCTAGCAAT
1 AAACGCCACTAAAAACCAAGCATTAGCGGCATTTCTGATCATAACGCCATTAAAAACCGAGCAAT
** *
74729967 AGTGGTGTTTCTAGTCCAAACGCCACTAAAAATTGAGCAATAGCGGCGTTTCTAGTCC
66 AGTGGTGTTTCTAGTCCAAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTGGTCC
* * * *
74730025 AAACGCCACTAAAAACCTAGCAATAGCGGCGTTTCTGGTCCA-AACGCCATTAAAAACCGAGCAA
1 AAACGCCACTAAAAACCAAGCATTAGCGGCATTTCTGAT-CATAACGCCATTAAAAACCGAGCAA
* ** * * * * *
74730089 TAGCGGCATTTTTGGTCCAAACACCACTAAAAATCGAGCAATAACGGCGTTTCT
65 TAGTGGTGTTTCTAGTCCAAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCT
74730143 ACTCAAAACA
Statistics
Matches: 308, Mismatches: 51, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
121 29 0.09
122 107 0.35
123 170 0.55
124 2 0.01
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (123 bp):
AAACGCCACTAAAAACCAAGCATTAGCGGCATTTCTGATCATAACGCCATTAAAAACCGAGCAAT
AGTGGTGTTTCTAGTCCAAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTGGTCC
Found at i:74730154 original size:41 final size:41
Alignment explanation
Indices: 74729658--74730143 Score: 471
Period size: 41 Copynumber: 11.9 Consensus size: 41
74729648 GTTTTGAATA
* * * * * * *
74729658 AAACACCACTAAAAACTGAGCAATAGCGACATTTTTGGTCA
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
* * * *
74729699 AAACGCCACTAAGAACCGAGCAATAGCGGCATTT-TGAAT-A
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCT-AGTCC
* * *
74729739 AAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
* * * ** *
74729780 AAACGCCACTAAGAATCGAGCATTAGCATCATTTCT-GATCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAG-TCC
* * * *
74729821 TAA-GCCACTAAAAACCGAGCAATAGTGGTGTTTCTAATCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
** * *
74729861 AAACGCCACTAAAAACCGAGCAATAGTAGTGTTTCTGGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
* * * *
74729902 AAATGCCACTAAAAACCAAGCATTAGCGGCATTTCT-GAT-C
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAG-TCC
* * * *
74729942 ATAACGCCATTAAAAACCTAGCAATAGTGGTGTTTCTAGTCC
1 A-AACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
**
74729984 AAACGCCACTAAAAATTGAGCAATAGCGGCGTTTCTAGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
* *
74730025 AAACGCCACTAAAAACCTAGCAATAGCGGCGTTTCTGGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
* * * *
74730066 AAACGCCATTAAAAACCGAGCAATAGCGGCATTTTTGGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
* * *
74730107 AAACACCACTAAAAATCGAGCAATAACGGCGTTTCTA
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTA
74730144 CTCAAAACAC
Statistics
Matches: 366, Mismatches: 69, Indels: 20
0.80 0.15 0.04
Matches are distributed among these distances:
40 67 0.18
41 296 0.81
42 3 0.01
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (41 bp):
AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCTAGTCC
Found at i:74731078 original size:21 final size:21
Alignment explanation
Indices: 74731026--74731079 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
74731016 TTTAAGTTAT
74731026 GGTTTAAGGTTTGTTATTTTG
1 GGTTTAAGGTTTGTTATTTTG
* **
74731047 GGCTTGGGGTTTGTTATTTTG
1 GGTTTAAGGTTTGTTATTTTG
74731068 GGTTTAAGGTTT
1 GGTTTAAGGTTT
74731080 AGGGTATATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.11, C:0.02, G:0.33, T:0.54
Consensus pattern (21 bp):
GGTTTAAGGTTTGTTATTTTG
Found at i:74731499 original size:21 final size:21
Alignment explanation
Indices: 74731455--74731499 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
74731445 AATTAATTTT
*
74731455 ATTTTATTTAAAAGTTTAATA
1 ATTTTATTTAAAAGTTTAAAA
74731476 ATTTTA-TTAAAAGTTTATAAA
1 ATTTTATTTAAAAGTTTA-AAA
74731497 ATT
1 ATT
74731500 ATACAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
ATTTTATTTAAAAGTTTAAAA
Found at i:74731545 original size:32 final size:32
Alignment explanation
Indices: 74731444--74731545 Score: 99
Period size: 32 Copynumber: 3.3 Consensus size: 32
74731434 AAAATCATAC
74731444 AAATTAATTTTATTTTATTTAAAAGTTTAAT-
1 AAATTAATTTTATTTTATTTAAAAGTTTAATA
* * ** *
74731475 AATTTTATTAAAAGTTTA--TAAAA--TT-ATA
1 AAATTAATT-TTATTTTATTTAAAAGTTTAATA
74731503 CAAATTAATTTTATTTTATTTAAAAGTTTAATA
1 -AAATTAATTTTATTTTATTTAAAAGTTTAATA
74731536 AAATTAATTT
1 AAATTAATTT
74731546 ACTTTAGGCT
Statistics
Matches: 53, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
27 2 0.04
28 7 0.13
29 7 0.13
30 10 0.19
31 7 0.13
32 17 0.32
33 3 0.06
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (32 bp):
AAATTAATTTTATTTTATTTAAAAGTTTAATA
Found at i:74732512 original size:9 final size:9
Alignment explanation
Indices: 74732500--74732537 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
74732490 CATTTGAAAA
74732500 TTAATGTTT
1 TTAATGTTT
*
74732509 TTAATG-AT
1 TTAATGTTT
74732517 TTAAT-TTT
1 TTAATGTTT
74732525 TTAATGTTT
1 TTAATGTTT
74732534 TTAA
1 TTAA
74732538 CGATTTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 12 0.48
9 13 0.52
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (9 bp):
TTAATGTTT
Found at i:74733145 original size:11 final size:11
Alignment explanation
Indices: 74733129--74733154 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74733119 CTTTGCCAAT
74733129 TCTTCTTATTG
1 TCTTCTTATTG
74733140 TCTTCTTATTG
1 TCTTCTTATTG
74733151 TCTT
1 TCTT
74733155 GGATTTACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.19, G:0.08, T:0.65
Consensus pattern (11 bp):
TCTTCTTATTG
Found at i:74736025 original size:103 final size:105
Alignment explanation
Indices: 74735865--74736166 Score: 482
Period size: 103 Copynumber: 2.8 Consensus size: 105
74735855 TTGAATATGT
*
74735865 TATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
1 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
74735930 ACCTAATTAAATTAAATTGTATTTAAAG-TTT-TTTTAAA
66 ACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
74735968 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
1 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
74736033 ACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
66 ACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
* * *
74736073 TATTTTATTTTATTTTATTTTAATTTAATCACAAAAAATATTTTATTTACTTTTATTTTATTGTT
1 TATTTTATTTTATTTTA---T--TTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTT
* * *
74736138 AAATAACTTAATTAAATTAAATTTTATTT
61 AAATTACCTAATTAAATTAAATTGTATTT
74736167 TTAAATATTG
Statistics
Matches: 185, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
103 92 0.50
104 3 0.02
105 24 0.13
108 1 0.01
110 65 0.35
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (105 bp):
TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATT
ACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAA
Found at i:74736465 original size:9 final size:9
Alignment explanation
Indices: 74736440--74736735 Score: 107
Period size: 9 Copynumber: 32.0 Consensus size: 9
74736430 ATATCATATC
74736440 TTACATAAT
1 TTACATAAT
74736449 TTACATAAT
1 TTACATAAT
*
74736458 TTACATAAC
1 TTACATAAT
74736467 TTACATAA-
1 TTACATAAT
74736475 -TACATAAAT
1 TTACAT-AAT
74736484 ATGTATCAT-AT
1 -T-TA-CATAAT
*
74736495 CGTACATAAT
1 -TTACATAAT
*
74736505 TTACATAAG
1 TTACATAAT
* * * *
74736514 ATAAACAAC
1 TTACATAAT
74736523 TTACATAA-
1 TTACATAAT
74736531 -TACATAAAT
1 TTACAT-AAT
74736540 ATATATCAT-AT
1 -T-TA-CATAAT
74736551 CTTACATAAT
1 -TTACATAAT
*
74736561 TTACATAAG
1 TTACATAAT
* * * *
74736570 ATAAACAAC
1 TTACATAAT
74736579 TTACATAA-
1 TTACATAAT
74736587 -TACATAAAT
1 TTACAT-AAT
74736596 ATATATCAT-AT
1 -T-TA-CATAAT
74736607 CTTACATAAT
1 -TTACATAAT
*
74736617 TTACATAAG
1 TTACATAAT
* * *
74736626 ATAAACAACT
1 TTACATAA-T
74736636 TT-CATAAT
1 TTACATAAT
*
74736644 TTACATAAC
1 TTACATAAT
*
74736653 TTACATGA-
1 TTACATAAT
74736661 -TACATAAAT
1 TTACAT-AAT
74736670 ATATATCAT-AT
1 -T-TA-CATAAT
74736681 CTTACATAAT
1 -TTACATAAT
74736691 TTACATAAT
1 TTACATAAT
* *
74736700 TCGA-ATAAC
1 T-TACATAAT
74736709 TTACATAAT
1 TTACATAAT
*
74736718 TTACATAAC
1 TTACATAAT
74736727 TTACATAAT
1 TTACATAAT
74736736 ACATAAATAT
Statistics
Matches: 215, Mismatches: 40, Indels: 64
0.67 0.13 0.20
Matches are distributed among these distances:
7 20 0.09
8 11 0.05
9 135 0.63
10 18 0.08
11 11 0.05
12 8 0.04
13 12 0.06
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (9 bp):
TTACATAAT
Found at i:74736506 original size:56 final size:56
Alignment explanation
Indices: 74736420--74736643 Score: 385
Period size: 56 Copynumber: 4.0 Consensus size: 56
74736410 AATCTCAGCA
** * *
74736420 ACATAAATATATATCATATCTTACATAATTTACATAATTTACATAACTTACATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
* *
74736476 ACATAAATATGTATCATATCGTACATAATTTACATAAGATAAACAACTTACATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
74736532 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
*
74736588 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTTCATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
74736644 TTACATAACT
Statistics
Matches: 159, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 159 1.00
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.35
Consensus pattern (56 bp):
ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
Found at i:74736654 original size:74 final size:74
Alignment explanation
Indices: 74736576--74736755 Score: 299
Period size: 74 Copynumber: 2.4 Consensus size: 74
74736566 TAAGATAAAC
*
74736576 AACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAAGAT-AAACAACTTTCA
1 AACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAA-ATCAAACAACTTACA
74736640 TAATTTACAT
65 TAATTTACAT
* * * *
74736650 AACTTACATGATACATAAATATATATCATATCTTACATAATTTACATAATTCGAATAACTTACAT
1 AACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAAATCAAACAACTTACAT
74736715 AATTTACAT
66 AATTTACAT
74736724 AACTTACATAATACATAAATATATATCATATC
1 AACTTACATAATACATAAATATATATCATATC
74736756 ATAACTTACA
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
73 1 0.01
74 98 0.99
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.37
Consensus pattern (74 bp):
AACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAAATCAAACAACTTACAT
AATTTACAT
Found at i:74736695 original size:112 final size:112
Alignment explanation
Indices: 74736420--74736699 Score: 332
Period size: 112 Copynumber: 2.5 Consensus size: 112
74736410 AATCTCAGCA
* * * * *
74736420 ACATAAATATATATCATATCTTACATAATTTACATAATTTACATAACTTACATAATACATAAATA
1 ACATAAATATACATCATATCATAAATAATATACATAACTTACATAACTTACATAATACATAAATA
*
74736485 TGTATCATATCGTACATAATTTACATAAGATAAACAACTTACATAAT
66 TATATCATATCGTACATAATTTACATAAGATAAACAACTTACATAAT
* * * * ** * *
74736532 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAATACATAAATA
1 ACATAAATATACATCATATCATAAATAATATACATAACTTACATAACTTACATAATACATAAATA
* *
74736597 TATATCATATCTTACATAATTTACATAAGATAAACAACTTTCATAATTT
66 TATATCATATCGTACATAATTTACATAAGATAAACAACTTACATAA--T
* * * *
74736646 ACATAACT-TACATGATA-CATAAAT-ATATATCATATCTTACATAATTTACATAAT
1 ACATAAATATACATCATATCATAAATAATATA-CATAACTTACATAACTTACATAAT
74736700 TCGAATAACT
Statistics
Matches: 146, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
111 4 0.03
112 127 0.87
113 7 0.05
114 8 0.05
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.36
Consensus pattern (112 bp):
ACATAAATATACATCATATCATAAATAATATACATAACTTACATAACTTACATAATACATAAATA
TATATCATATCGTACATAATTTACATAAGATAAACAACTTACATAAT
Found at i:74736734 original size:27 final size:27
Alignment explanation
Indices: 74736676--74736768 Score: 79
Period size: 27 Copynumber: 3.5 Consensus size: 27
74736666 AAATATATAT
*
74736676 CATATCTTACATAATTTACATAA-TT-
1 CATAACTTACATAATTTACATAACTTA
74736701 CGAATAACTTACATAATTTACATAACTTA
1 C--ATAACTTACATAATTTACATAACTTA
* * * *
74736730 CATAA--TACATAA-ATATATATCATA
1 CATAACTTACATAATTTACATAACTTA
74736754 TCATAACTTACATAA
1 -CATAACTTACATAA
74736769 CTTAATTATA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
24 8 0.14
25 13 0.23
27 32 0.57
28 2 0.04
29 1 0.02
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.37
Consensus pattern (27 bp):
CATAACTTACATAATTTACATAACTTA
Found at i:74742571 original size:31 final size:31
Alignment explanation
Indices: 74742535--74742600 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
74742525 TGTATTTTTT
74742535 ATGCTACATTTGCTATTTTTGGTTGGATTCA
1 ATGCTACATTTGCTATTTTTGGTTGGATTCA
* * *
74742566 ATGCTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGCTACATTTGCTATTTTTGGTTGGATTCA
74742597 ATGC
1 ATGC
74742601 AGGAAGGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.18, C:0.11, G:0.21, T:0.50
Consensus pattern (31 bp):
ATGCTACATTTGCTATTTTTGGTTGGATTCA
Found at i:74742698 original size:43 final size:44
Alignment explanation
Indices: 74742650--74742872 Score: 171
Period size: 43 Copynumber: 5.2 Consensus size: 44
74742640 TATGCCAAAA
*
74742650 TTAGCGGCG-TTTGT-AACAAAAGCACCGCTAAAAACCATGACTT
1 TTAGCGGCGCTTT-TCAACAAAAGCACCGCTAAAAGCCATGACTT
* * * *
74742693 TTAGCGGCG--TTTCACCCAAAAACGCCACTAAAAGCCATGACTT
1 TTAGCGGCGCTTTTCA-ACAAAAGCACCGCTAAAAGCCATGACTT
* * * *
74742736 TTAGCAGCGCTTTTCCCACAAATG--CTGCTAAAAGCCATGACTT
1 TTAGCGGCGCTTTT-CAACAAAAGCACCGCTAAAAGCCATGACTT
* * *
74742779 TTAGTGGCGCTTTTCCCACAAATGCA--GCTAAAAGCCATGACTT
1 TTAGCGGCGCTTTT-CAACAAAAGCACCGCTAAAAGCCATGACTT
* * * *
74742822 TTAGCGGCTCTTTTC-CCACAAA-CGCCGCTAAAAGTCATGATCTT
1 TTAGCGGCGCTTTTCAACA-AAAGCACCGCTAAAAGCCATGA-CTT
74742866 TT-GCGGC
1 TTAGCGGC
74742873 ATTTTTTCAA
Statistics
Matches: 149, Mismatches: 20, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
41 4 0.03
42 6 0.04
43 126 0.85
44 5 0.03
45 7 0.05
46 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (44 bp):
TTAGCGGCGCTTTTCAACAAAAGCACCGCTAAAAGCCATGACTT
Found at i:74742774 original size:86 final size:86
Alignment explanation
Indices: 74742674--74742872 Score: 260
Period size: 86 Copynumber: 2.3 Consensus size: 86
74742664 AACAAAAGCA
*
74742674 CCGCTAAAAACCATGACTTTTAGCGGCG-TTTCACCCAAAAACGCCA-CTAAAAGCCATGACTTT
1 CCGCTAAAAGCCATGACTTTTAGCGGCGCTTT-ACCCAAAAACG-CAGCTAAAAGCCATGACTTT
*
74742737 TAGCAGCGCTTTTCCCACAAATG
64 TAGCAGCGCTTTTCCCACAAACG
* * * * *
74742760 CTGCTAAAAGCCATGACTTTTAGTGGCGCTTTTCCCACAAATGCAGCTAAAAGCCATGACTTTTA
1 CCGCTAAAAGCCATGACTTTTAGCGGCGCTTTACCCAAAAACGCAGCTAAAAGCCATGACTTTTA
* *
74742825 GCGGCTCTTTTCCCACAAACG
66 GCAGCGCTTTTCCCACAAACG
*
74742846 CCGCTAAAAGTCATGATCTTTT-GCGGC
1 CCGCTAAAAGCCATGA-CTTTTAGCGGC
74742873 ATTTTTTCAA
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
85 2 0.02
86 88 0.90
87 8 0.08
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (86 bp):
CCGCTAAAAGCCATGACTTTTAGCGGCGCTTTACCCAAAAACGCAGCTAAAAGCCATGACTTTTA
GCAGCGCTTTTCCCACAAACG
Found at i:74742889 original size:44 final size:43
Alignment explanation
Indices: 74742674--74742893 Score: 187
Period size: 43 Copynumber: 5.1 Consensus size: 43
74742664 AACAAAAGCA
* *
74742674 CCGCTAAAAACCATGACTTTTAGCGG--CGTTTCACCCAA-AAACG
1 CCGCTAAAAGCCATGACTTTTAGCGGCTCTTTTCA---AACAAACG
* * * ** *
74742717 CCACTAAAAGCCATGACTTTTAGCAGCGCTTTTCCCACAAATG
1 CCGCTAAAAGCCATGACTTTTAGCGGCTCTTTTCAAACAAACG
* * * ** *
74742760 CTGCTAAAAGCCATGACTTTTAGTGGCGCTTTTCCCACAAATG
1 CCGCTAAAAGCCATGACTTTTAGCGGCTCTTTTCAAACAAACG
* **
74742803 CAGCTAAAAGCCATGACTTTTAGCGGCTCTTTTCCCACAAACG
1 CCGCTAAAAGCCATGACTTTTAGCGGCTCTTTTCAAACAAACG
* * *
74742846 CCGCTAAAAGTCATGATCTTTT-GCGGCATTTTTTCAAATAAACG
1 CCGCTAAAAGCCATGA-CTTTTAGCGGC-TCTTTTCAAACAAACG
74742890 CCGC
1 CCGC
74742894 AAATTTTTGC
Statistics
Matches: 151, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.01
43 124 0.82
44 21 0.14
45 5 0.03
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (43 bp):
CCGCTAAAAGCCATGACTTTTAGCGGCTCTTTTCAAACAAACG
Found at i:74745493 original size:40 final size:40
Alignment explanation
Indices: 74745449--74745599 Score: 174
Period size: 40 Copynumber: 4.0 Consensus size: 40
74745439 TTACAGTACC
* *
74745449 ACTTGGTGTGTAGGGCTGGATGGGTCGATTTTGTCCCCAT
1 ACTTGGTGTGTAGGGCTGGATGGGTCAATTTTATCCCCAT
*
74745489 ACTTGGTGTGTAGGGCTGGGTGGGTCAATTTTATCCCC--
1 ACTTGGTGTGTAGGGCTGGATGGGTCAATTTTATCCCCAT
* * * *
74745527 AC------AGTAGGACTGGATGGGTCGATTTTGTCCCCAT
1 ACTTGGTGTGTAGGGCTGGATGGGTCAATTTTATCCCCAT
*
74745561 ACTTGGTGTGTAGGGCTGGGTGGGTCAATTTTATCCCCA
1 ACTTGGTGTGTAGGGCTGGATGGGTCAATTTTATCCCCA
74745600 CATGGTGTGT
Statistics
Matches: 90, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
32 25 0.28
34 2 0.02
38 2 0.02
40 61 0.68
ACGTcount: A:0.15, C:0.19, G:0.33, T:0.33
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGATGGGTCAATTTTATCCCCAT
Found at i:74745534 original size:32 final size:32
Alignment explanation
Indices: 74745498--74745601 Score: 91
Period size: 32 Copynumber: 3.0 Consensus size: 32
74745488 TACTTGGTGT
74745498 GTAGGGCTGGGTGGGTCAATTTTATCCCCACA
1 GTAGGGCTGGGTGGGTCAATTTTATCCCCACA
* * * * *
74745530 GTAGGACTGGATGGGTCGATTTTGTCCCCATACTTGGTGT
1 GTAGGGCTGGGTGGGTCAATTTTATCCCC--AC------A
74745570 GTAGGGCTGGGTGGGTCAATTTTATCCCCACA
1 GTAGGGCTGGGTGGGTCAATTTTATCCCCACA
74745602 TGGTGTGTTG
Statistics
Matches: 54, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
32 25 0.46
34 2 0.04
38 2 0.04
40 25 0.46
ACGTcount: A:0.17, C:0.20, G:0.32, T:0.31
Consensus pattern (32 bp):
GTAGGGCTGGGTGGGTCAATTTTATCCCCACA
Found at i:74745575 original size:72 final size:72
Alignment explanation
Indices: 74745458--74745601 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
74745448 CACTTGGTGT
*
74745458 GTAGGGCTGGATGGGTCGATTTTGTCCCCATACTTGGTGTGTAGGGCTGGGTGGGTCAATTTTAT
1 GTAGGACTGGATGGGTCGATTTTGTCCCCATACTTGGTGTGTAGGGCTGGGTGGGTCAATTTTAT
74745523 CCCCACA
66 CCCCACA
74745530 GTAGGACTGGATGGGTCGATTTTGTCCCCATACTTGGTGTGTAGGGCTGGGTGGGTCAATTTTAT
1 GTAGGACTGGATGGGTCGATTTTGTCCCCATACTTGGTGTGTAGGGCTGGGTGGGTCAATTTTAT
74745595 CCCCACA
66 CCCCACA
74745602 TGGTGTGTTG
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.16, C:0.19, G:0.33, T:0.32
Consensus pattern (72 bp):
GTAGGACTGGATGGGTCGATTTTGTCCCCATACTTGGTGTGTAGGGCTGGGTGGGTCAATTTTAT
CCCCACA
Found at i:74752738 original size:41 final size:38
Alignment explanation
Indices: 74752691--74752791 Score: 132
Period size: 41 Copynumber: 2.6 Consensus size: 38
74752681 TTTTACAGTA
74752691 CCACTTGGTGTGTAGGGTTGGATGGGTCGATTTTTATCC
1 CCACTTGGTGTGTAGGGTTGGATGGGTCGA-TTTTATCC
*
74752730 CCATACTTGGTGTGTAGGGCTGCG-TGGGTCGATTTTATCC
1 CC--ACTTGGTGTGTAGGGTTG-GATGGGTCGATTTTATCC
* *
74752770 CCACATGGTGTGTTGGGTTGGA
1 CCACTTGGTGTGTAGGGTTGGA
74752792 CAGAGATGGT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
37 1 0.02
38 15 0.28
39 2 0.04
40 10 0.19
41 25 0.46
42 1 0.02
ACGTcount: A:0.13, C:0.17, G:0.35, T:0.36
Consensus pattern (38 bp):
CCACTTGGTGTGTAGGGTTGGATGGGTCGATTTTATCC
Found at i:74756464 original size:11 final size:11
Alignment explanation
Indices: 74756450--74756506 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
74756440 ATTGAATTAA
*
74756450 TAAAATACTAT
1 TAAAATAATAT
74756461 TAAAATAAGTAT
1 TAAAATAA-TAT
*
74756473 TAAATTTAATAT
1 TAAA-ATAATAT
*
74756485 T-AAAT-TTAT
1 TAAAATAATAT
74756494 TAAAATAATAT
1 TAAAATAATAT
74756505 TA
1 TA
74756507 TTTTTGAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
9 4 0.11
10 5 0.14
11 14 0.38
12 11 0.30
13 3 0.08
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
TAAAATAATAT
Found at i:74773408 original size:330 final size:330
Alignment explanation
Indices: 74772807--74773463 Score: 1107
Period size: 330 Copynumber: 2.0 Consensus size: 330
74772797 AACCCATATG
* *
74772807 ACATCTTTCTTTTTCGGAGTCATAGGTAGTCTTGTCACAAAATCCATGGTAATTCCGTCCCACTT
1 ACATCTTTCTTTTTCGGAGTCATAGGTAGTCCTCTCACAAAATCCATGGTAATTCCGTCCCACTT
*
74772872 CCATTCGGGGACCATTACAGGTTGTAACAAACTTGAAGGAACTTGATATTCAGCTTTAACTTGCT
66 CCATTCGGGGACCATTACAGGTTGTAACAAACCTGAAGGAACTTGATATTCAGCTTTAACTTGCT
* * * *
74772937 AATATACCAGGCATTTCGATACAAATTTAGAAACATCTCTTTTCATGTCGCTCCCCCAGTACATC
131 AACATACCAGGCATTTCGATACAAATTCAGAAACATCTCTTTTCATGCCGCTCCACCAGTACATC
* *
74773002 TTCTTTAAATTGTTGTACATCTTGGTACTTCCTGGGTGAACTAACAAACGACTATTATATGCTTC
196 TTCTTTAAATCGTTGTACATCTTGGTACTTCCCGGGTGAACTAACAAACGACTATTATATGCTTC
*
74773067 TTGCAAAATCTTCCGAATCAGTTCATTATCTTTGGGTACACAAACCCTATCTCTAAACATTAAAC
261 TTGCAAAATCTTCCGAATAAGTTCATTATCTTTGGGTACACAAACCCTATCTCTAAACATTAAAC
74773132 ATTAA
326 ATTAA
* * *
74773137 ACATCTTTCTTTTTTGGAGTCATAGGTAGTCCTCTCACAAAGTCCATGGTAATTCTGTCCCACTT
1 ACATCTTTCTTTTTCGGAGTCATAGGTAGTCCTCTCACAAAATCCATGGTAATTCCGTCCCACTT
* * * *
74773202 CCATTTGGGGACCATTACAGGTTGTAATAAACCTGAAGGCACTTGATGTTCAGCTTTAACTTGCT
66 CCATTCGGGGACCATTACAGGTTGTAACAAACCTGAAGGAACTTGATATTCAGCTTTAACTTGCT
* *
74773267 GACATACCAGGCATTTTGATACAAATTCAGAAACATCTCTTTTCATGCCGCTCCACCAGTACATC
131 AACATACCAGGCATTTCGATACAAATTCAGAAACATCTCTTTTCATGCCGCTCCACCAGTACATC
* *
74773332 TTCTTTAAATCGTTGTACATCTTGGTACTTCCCGGGTGAACTAATAAACGACTATTATGTGCTTC
196 TTCTTTAAATCGTTGTACATCTTGGTACTTCCCGGGTGAACTAACAAACGACTATTATATGCTTC
* *
74773397 TTGCAAAATCTTCTGAATAATTTCATTATCTTTGGGTACACAAACCCTATCTCTAAACATTAAAC
261 TTGCAAAATCTTCCGAATAAGTTCATTATCTTTGGGTACACAAACCCTATCTCTAAACATTAAAC
74773462 AT
326 AT
74773464 CCCTTAGGAC
Statistics
Matches: 304, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
330 304 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (330 bp):
ACATCTTTCTTTTTCGGAGTCATAGGTAGTCCTCTCACAAAATCCATGGTAATTCCGTCCCACTT
CCATTCGGGGACCATTACAGGTTGTAACAAACCTGAAGGAACTTGATATTCAGCTTTAACTTGCT
AACATACCAGGCATTTCGATACAAATTCAGAAACATCTCTTTTCATGCCGCTCCACCAGTACATC
TTCTTTAAATCGTTGTACATCTTGGTACTTCCCGGGTGAACTAACAAACGACTATTATATGCTTC
TTGCAAAATCTTCCGAATAAGTTCATTATCTTTGGGTACACAAACCCTATCTCTAAACATTAAAC
ATTAA
Found at i:74783924 original size:120 final size:121
Alignment explanation
Indices: 74783711--74783940 Score: 399
Period size: 120 Copynumber: 1.9 Consensus size: 121
74783701 GAGAATTGAG
* * *
74783711 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
74783776 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCA-AAAAGTATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCACAAAAGTATTCGTGCT
* * *
74783831 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
74783896 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCACAAAA
66 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCACAAAA
74783941 AACCAATTAT
Statistics
Matches: 103, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
120 99 0.96
121 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (121 bp):
AGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCACAAAAGTATTCGTGCT
Found at i:74783934 original size:40 final size:40
Alignment explanation
Indices: 74783711--74783931 Score: 336
Period size: 40 Copynumber: 5.5 Consensus size: 40
74783701 GAGAATTGAG
*
74783711 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
74783751 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * *
74783791 AGTGATATATCCGGACTAAGTTCCAAAAAGTATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
74783831 AGTGATATATCCAGG-TTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCC-GGACTAAGTCCCGAAGAGCATTCGTGCT
* *
74783871 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
74783911 AGTGATATATCCGGACTAAGT
1 AGTGATATATCCGGACTAAGT
74783932 TCCACAAAAA
Statistics
Matches: 163, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.01
40 159 0.98
41 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:74786789 original size:47 final size:47
Alignment explanation
Indices: 74786736--74787195 Score: 812
Period size: 47 Copynumber: 9.7 Consensus size: 47
74786726 TTAGGATTCT
74786736 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
74786783 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
74786830 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
74786877 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
74786924 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
74786971 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
74787018 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
74787065 ATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * * *
74787114 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
74787161 ACGTGGTGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74787196 TCCCGAAGGG
Statistics
Matches: 400, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 354 0.88
49 46 0.12
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:74787370 original size:37 final size:37
Alignment explanation
Indices: 74787314--74787392 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74787304 CCGAGCTCTA
* * *
74787314 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74787351 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74787388 AAGAC
1 AAGAC
74787393 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74796045 original size:16 final size:17
Alignment explanation
Indices: 74796014--74796046 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74796004 TATGTAGCTA
*
74796014 GATTTTTTGTATAAATT
1 GATTTTTTGGATAAATT
74796031 GATTTTTTGGA-AAATT
1 GATTTTTTGGATAAATT
74796047 ATATTTGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (17 bp):
GATTTTTTGGATAAATT
Found at i:74796242 original size:4 final size:4
Alignment explanation
Indices: 74796235--74796274 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
74796225 TCACACACAA
*
74796235 AAAT AAAT AAAT AAAT AAAT AAAT AATAA AAAT AAA- AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT
74796275 TATTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.09
4 26 0.81
5 3 0.09
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:74803398 original size:20 final size:21
Alignment explanation
Indices: 74803359--74803398 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74803349 GAATTAATGG
74803359 CTACACGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
*
74803380 CTACATGGGCGTG-TGCCCT
1 CTACACGGGCGTGTTGCCCT
74803399 GTTCTAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.33, G:0.30, T:0.28
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:74807927 original size:4 final size:4
Alignment explanation
Indices: 74807920--74807968 Score: 64
Period size: 4 Copynumber: 12.2 Consensus size: 4
74807910 TTGCTTGTAC
* *
74807920 ATAA ATAA ATAA ATAA ATAAA ATGA A-AA TTAA ATAA ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
74807968 A
1 A
74807969 GGCTCAAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 1 0.03
4 34 0.87
5 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:74813230 original size:49 final size:50
Alignment explanation
Indices: 74813172--74813405 Score: 285
Period size: 49 Copynumber: 4.7 Consensus size: 50
74813162 ATCTCGTATG
* *
74813172 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CTAATTATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACA
* * ** * *
74813221 CGTAGTAGCCTGCACTTAGTACTACAC-CGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACA
* * * * * *
74813270 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-TTATCCGGTACA
* *
74813321 CATAGTAGCCTGCACTTAGTACTACACATGCTACC-AATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACA
*
74813370 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCT
74813406 CACAATAGAT
Statistics
Matches: 156, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.02
49 106 0.68
50 10 0.06
51 37 0.24
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACA
Found at i:74813345 original size:100 final size:97
Alignment explanation
Indices: 74813172--74813403 Score: 295
Period size: 100 Copynumber: 2.4 Consensus size: 97
74813162 ATCTCGTATG
* * * *
74813172 CATAGTAGCCTGCACTTAGTACTACACATGCGACTAATTATCCAGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCAGTACACATAGTAGCCTGCACT
* *
74813237 TAGTACTACACCGTG-ACCTAACCATCTGATACA
66 TAGTACTACA-CATGCACC-AACCATCCGATACA
* ** *
74813270 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCCAGTACACATAGTAGCCTGCA
** *
74813335 CTTAGTACTACACATGCTACCAATTATCCGGTACA
64 CTTAGTACTACACATGC-ACCAACCATCCGATACA
74813370 CATAGTAGCCTGCACTTAGTACTACACACGTGAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGAC
74813404 CTCACAATAG
Statistics
Matches: 116, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
98 30 0.26
99 7 0.06
100 76 0.66
101 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (97 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCAGTACACATAGTAGCCTGCACT
TAGTACTACACATGCACCAACCATCCGATACA
Found at i:74816457 original size:14 final size:16
Alignment explanation
Indices: 74816438--74816470 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
74816428 TTTTTTTAAA
74816438 AAATTA-TAAAA-ATT
1 AAATTATTAAAATATT
74816452 AAATTATTAAAATATT
1 AAATTATTAAAATATT
74816468 AAA
1 AAA
74816471 ATAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 5 0.29
16 6 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATTATTAAAATATT
Found at i:74838367 original size:26 final size:26
Alignment explanation
Indices: 74838331--74838384 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
74838321 GTTTGATGTG
74838331 TTAGCAAGTAAAAGTAGAACACCAAT
1 TTAGCAAGTAAAAGTAGAACACCAAT
74838357 TTAGCAAGTAAAAGTAGAACACCAAT
1 TTAGCAAGTAAAAGTAGAACACCAAT
74838383 TT
1 TT
74838385 CCTTCTGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (26 bp):
TTAGCAAGTAAAAGTAGAACACCAAT
Found at i:74843653 original size:13 final size:13
Alignment explanation
Indices: 74843635--74843663 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
74843625 CGTAAACAAT
74843635 TTTTTGTGTCATG
1 TTTTTGTGTCATG
74843648 TTTTTGTGTCATG
1 TTTTTGTGTCATG
74843661 TTT
1 TTT
74843664 ATCATAGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.21, T:0.66
Consensus pattern (13 bp):
TTTTTGTGTCATG
Found at i:74845968 original size:94 final size:90
Alignment explanation
Indices: 74845803--74846023 Score: 268
Period size: 92 Copynumber: 2.4 Consensus size: 90
74845793 GTATTACTAA
* *
74845803 AACTTTCAAAATGTATGAAAAAGGCCCTCAAACTTAAAAAAAAAACAATTAAACACTTGCTCTCT
1 AACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTAAAAAAAAAACAATTAAACACTTG--CTC-
* *
74845868 TTTTTTTTTTGCACTCAATTGGGTACTTC
63 -TTGTTTTTTGCACTCAATTGAGTACTTC
* * *
74845897 AACTTTCAAAATGCATCAAAAATGCCCTCAAACTTGAGAAAAGAAGAAGCAATTAAGCTA-TTG-
1 AACTTTCAAAATGCATCAAAAAGGCCCTCAAACTT-A-AAAA-AA-AAACAATTAAAC-ACTTGC
*
74845960 T-TTGTTTTTTGCACTCAATTGAGTACTTG
61 TCTTGTTTTTTGCACTCAATTGAGTACTTC
74845989 AACTTTCAAAATGCATCAAAAAGGCCCTCAAACTT
1 AACTTTCAAAATGCATCAAAAAGGCCCTCAAACTT
74846024 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
92 59 0.52
94 32 0.28
95 2 0.02
96 4 0.04
97 2 0.02
98 13 0.12
99 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (90 bp):
AACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTAAAAAAAAAACAATTAAACACTTGCTCTTG
TTTTTTGCACTCAATTGAGTACTTC
Found at i:74846091 original size:89 final size:91
Alignment explanation
Indices: 74845870--74846101 Score: 272
Period size: 92 Copynumber: 2.6 Consensus size: 91
74845860 TGCTCTCTTT
* * *
74845870 TTTTTTTTGCACTCAATTGGGTACTTCAACTTTCAAAATGCATCAAAAATGCCCTCAAACTTGAG
1 TTTTTTTTGCACTCAATTGGATACTTGAACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTGAG
* * **
74845935 AAAAGAAGAAGCAATTAAGCTATTGT
66 AAAAGAAGAAGAAATTAAGCCATTAC
*
74845961 TTGTTTTTTGCACTCAATT-GAGTACTTGAACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTT
1 TT-TTTTTTGCACTCAATTGGA-TACTTGAACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTG
*** * *
74846025 TTCAAA-AA-AAGAAATTAGGCCCTTAC
64 AGAAAAGAAGAAGAAATTAAGCCATTAC
* ** *
74846051 TTTTTTTTGCATTCAATTGGATACTTGAACTGCCAAAATGCATAAAAAAGG
1 TTTTTTTTGCACTCAATTGGATACTTGAACTTTCAAAATGCATCAAAAAGG
74846102 TTCTTTGACT
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
89 42 0.35
90 16 0.13
91 5 0.04
92 58 0.48
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (91 bp):
TTTTTTTTGCACTCAATTGGATACTTGAACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTGAG
AAAAGAAGAAGAAATTAAGCCATTAC
Found at i:74846302 original size:39 final size:39
Alignment explanation
Indices: 74846259--74846341 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
74846249 AATTTTAATT
*
74846259 AAAATTATTAAAAATTATTAAAATCAT-AAAAAAATATAG
1 AAAATT-TTAAAAATTATAAAAATCATAAAAAAAATATAG
** ** *
74846298 AAAATTTTAAATTTTATAAAAATTGTAAAAAAAATATAT
1 AAAATTTTAAAAATTATAAAAATCATAAAAAAAATATAG
74846337 AAAAT
1 AAAAT
74846342 ATATAGAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 15 0.41
39 22 0.59
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (39 bp):
AAAATTTTAAAAATTATAAAAATCATAAAAAAAATATAG
Found at i:74846308 original size:58 final size:58
Alignment explanation
Indices: 74846246--74846359 Score: 142
Period size: 58 Copynumber: 2.0 Consensus size: 58
74846236 ATCAAATATA
* * *
74846246 TTAAATTTTAATTAAAATTAT-TAAAAATTAT-TAAAATCATAAAAAAATATAGAAAATT
1 TTAAATTTT-ATAAAAATTATAAAAAAAATATATAAAAT-ATAAAAAAATATAGAAAATT
* * *
74846304 TTAAATTTTATAAAAATTGTAAAAAAAATATATAAAATATATAGAAATATAGAAAA
1 TTAAATTTTATAAAAATTATAAAAAAAATATATAAAATATAAAAAAATATAGAAAA
74846360 AAATTATAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
57 9 0.19
58 33 0.69
59 6 0.12
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.35
Consensus pattern (58 bp):
TTAAATTTTATAAAAATTATAAAAAAAATATATAAAATATAAAAAAATATAGAAAATT
Found at i:74846411 original size:69 final size:67
Alignment explanation
Indices: 74846286--74846437 Score: 148
Period size: 69 Copynumber: 2.2 Consensus size: 67
74846276 TTAAAATCAT
* * * *
74846286 AAAAAAATATAGAAAATTTTAAATTTTATAAAAATTGTAAAAAAAATATATAAAATATATAGAAA
1 AAAAAAAT-TATAAAATTTTAAATTATATAAAAATTATAAAAAAAATACA-AAAA-ATATA-AAA
*
74846351 TATA-G
62 TATATA
* * *
74846356 AAAAAAATTATAAAATTTTATATTATA-AGAAAATTAT-AAAAAAATGCAAAGAAATATAAAATT
1 AAAAAAATTATAAAATTTTAAATTATATA-AAAATTATAAAAAAAATACAAA-AAATATAAAATA
*
74846419 TGTA
64 TATA
74846423 AAAAAAATTATAAAA
1 AAAAAAATTATAAAA
74846438 ATTATTTTAC
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
66 5 0.07
67 22 0.31
68 12 0.17
69 23 0.33
70 8 0.11
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (67 bp):
AAAAAAATTATAAAATTTTAAATTATATAAAAATTATAAAAAAAATACAAAAAATATAAAATATA
TA
Found at i:74846642 original size:14 final size:14
Alignment explanation
Indices: 74846623--74846652 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74846613 TTTTTATGCA
74846623 TTTTATAATTTTAT
1 TTTTATAATTTTAT
*
74846637 TTTTATGATTTTAT
1 TTTTATAATTTTAT
74846651 TT
1 TT
74846653 AAAATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTTATAATTTTAT
Found at i:74846693 original size:19 final size:19
Alignment explanation
Indices: 74846657--74846700 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
74846647 TTATTTAAAA
74846657 TTTTATAATTTAATAATAT
1 TTTTATAATTTAATAATAT
*
74846676 TTTTATGAATTTTA-AATAT
1 TTTTAT-AATTTAATAATAT
74846695 TTTTAT
1 TTTTAT
74846701 TTAAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTATAATTTAATAATAT
Found at i:74847013 original size:89 final size:89
Alignment explanation
Indices: 74846851--74847064 Score: 231
Period size: 89 Copynumber: 2.4 Consensus size: 89
74846841 GTTAAATGGT
* * * *
74846851 CTTTTTGATATATTTTGACAGTTTAAGTACTCAATTGAGTGCAAAAAAAAGCAAGAGATTAATTG
1 CTTTTTGATACATTTTGAAAGTTTAAGTACTCAACTGAGTGCAAAAAAAAGAAAGAGATTAATTG
* **
74846916 CTTTTTTTG-AAAAAGTTTGGGGGC
66 C-TATTTTGAAAAAAGTTTGAAGGC
* * *
74846940 CTTTTTGATACATTTTGAAAGTTCAAGTGCTCAACTGAGTGCAAAAAAAA-AAAGTAGGGCTTAA
1 CTTTTTGATACATTTTGAAAGTTTAAGTACTCAACTGAGTGCAAAAAAAAGAAAG-A--GATTAA
74847004 TTGC-ATTTTGTAAAAAAGTTTGAAGGC
63 TTGCTATTTTG-AAAAAAGTTTGAAGGC
*
74847031 CTTTTTTTG-TACATTTTAAAAGTTTAAGTA-TCAA
1 C--TTTTTGATACATTTTGAAAGTTTAAGTACTCAA
74847065 ATTGAATGAA
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
88 3 0.03
89 51 0.49
91 27 0.26
92 18 0.17
93 6 0.06
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (89 bp):
CTTTTTGATACATTTTGAAAGTTTAAGTACTCAACTGAGTGCAAAAAAAAGAAAGAGATTAATTG
CTATTTTGAAAAAAGTTTGAAGGC
Found at i:74847077 original size:91 final size:91
Alignment explanation
Indices: 74846909--74847079 Score: 204
Period size: 91 Copynumber: 1.9 Consensus size: 91
74846899 AAGCAAGAGA
* * * ** * *
74846909 TTAATTGCTTTTTTTGAAAAAGTTTGGGGGCCTTTTTGATACATTTTGAAAGTTCAAGTGCTCAA
1 TTAATTGCATTTTGTAAAAAAGTTTGAAGGCCTTTTTGATACATTTTAAAAGTTCAAGTGATCAA
*
74846974 CTGAGTGCAAAAAAAAAAAGTAGGGC
66 CTGAATGCAAAAAAAAAAAGTAGGGC
*
74847000 TTAATTGCATTTTGTAAAAAAGTTTGAAGGCCTTTTTTTG-TACATTTTAAAAGTTTAAGT-ATC
1 TTAATTGCATTTTGTAAAAAAGTTTGAAGGCC--TTTTTGATACATTTTAAAAGTTCAAGTGATC
*
74847063 AAATTGAATG-AAAAAAA
64 -AACTGAATGCAAAAAAA
74847080 CAGACTTAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
91 36 0.54
92 25 0.37
93 6 0.09
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (91 bp):
TTAATTGCATTTTGTAAAAAAGTTTGAAGGCCTTTTTGATACATTTTAAAAGTTCAAGTGATCAA
CTGAATGCAAAAAAAAAAAGTAGGGC
Found at i:74847379 original size:12 final size:12
Alignment explanation
Indices: 74847358--74847387 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
74847348 TTTGTTGCTA
74847358 AAACGAAAACGT
1 AAACGAAAACGT
*
74847370 AAACGTAAACGT
1 AAACGAAAACGT
74847382 AAACGA
1 AAACGA
74847388 GAGGATTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.10
Consensus pattern (12 bp):
AAACGAAAACGT
Found at i:74854891 original size:26 final size:26
Alignment explanation
Indices: 74854855--74854964 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
74854845 CATGAAATTC
74854855 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
74854881 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
74854907 TTATCATGAAACATTTAACTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
74854933 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
74854959 TTATCA
1 TTATCA
74854965 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:74857460 original size:32 final size:32
Alignment explanation
Indices: 74857421--74857484 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
74857411 AGATACTTTC
74857421 AAAAATACTTTATCACTGACTTGATACTCAAT
1 AAAAATACTTTATCACTGACTTGATACTCAAT
*
74857453 AAAAATACTTTATTACTGACTTGATACTCAAT
1 AAAAATACTTTATCACTGACTTGATACTCAAT
74857485 TTCTTTTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.36
Consensus pattern (32 bp):
AAAAATACTTTATCACTGACTTGATACTCAAT
Found at i:74860882 original size:224 final size:224
Alignment explanation
Indices: 74860492--74860937 Score: 768
Period size: 224 Copynumber: 2.0 Consensus size: 224
74860482 GCTACTAGCT
*
74860492 CTATTACCGGCATTTCTCAGGGGTCTCCCTTTTGTAGCCGTACTATTCGATCTCGCACTCTGAAA
1 CTATTACCAGCATTTCTCAGGGGTCTCCCTTTTGTAGCCGTACTATTCGATCTCGCACTCTGAAA
* * * **
74860557 TTTTTCTTTCTTGATCATCTTAGGATAGTCATTAATATAGTGGCCTTGAGAACCACATTGGAAAC
66 TTTTTCTTTCTCGATCATCTCAGGACAGTCATTAATATAGTGGCCTTGAGAACCACATCAGAAAC
*
74860622 AAGATCCATCATTCATCCTACACATACCAAAATGGCTTCTACCACATTGTTGGCACTCGGATTTA
131 AAGATCCATCATTCATCCTACACATACCAAAATGGCTTCAACCACATTGTTGGCACTCGGATTTA
74860687 GAAGGCCGAGCATTACCCACACTAGCCCC
196 GAAGGCCGAGCATTACCCACACTAGCCCC
* *
74860716 CTATTACCAGTATTTCTCAGGGGTCTTCCTTTTGTAGCCGTACTATTC-AGTCTCGCACTCTGAA
1 CTATTACCAGCATTTCTCAGGGGTCTCCCTTTTGTAGCCGTACTATTCGA-TCTCGCACTCTGAA
*
74860780 ATTTTTCTTTCTCGATCATCTCAGGACAGTTATTAATATAGTGGCCTTGAGAACCACATCAGAAA
65 ATTTTTCTTTCTCGATCATCTCAGGACAGTCATTAATATAGTGGCCTTGAGAACCACATCAGAAA
* *
74860845 CAAGATCCATCATTCGTCCTACACATACCAAAATGGCTTCAACCACATTGTTGGCACTCGGGTTT
130 CAAGATCCATCATTCATCCTACACATACCAAAATGGCTTCAACCACATTGTTGGCACTCGGATTT
74860910 AGAAGGCCGAGCATTACCCACACTAGCC
195 AGAAGGCCGAGCATTACCCACACTAGCC
74860938 ACAGATGTAC
Statistics
Matches: 209, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
223 1 0.00
224 208 1.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (224 bp):
CTATTACCAGCATTTCTCAGGGGTCTCCCTTTTGTAGCCGTACTATTCGATCTCGCACTCTGAAA
TTTTTCTTTCTCGATCATCTCAGGACAGTCATTAATATAGTGGCCTTGAGAACCACATCAGAAAC
AAGATCCATCATTCATCCTACACATACCAAAATGGCTTCAACCACATTGTTGGCACTCGGATTTA
GAAGGCCGAGCATTACCCACACTAGCCCC
Found at i:74864311 original size:18 final size:19
Alignment explanation
Indices: 74864288--74864331 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
74864278 TGTTATTTAC
*
74864288 ATTTGTGGAAGA-AATCAA
1 ATTTGTGGAACATAATCAA
74864306 ATTTGT-GAACATAATCAA
1 ATTTGTGGAACATAATCAA
74864324 ACTTTGTG
1 A-TTTGTG
74864332 AGGGTTCTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.18
18 13 0.59
19 5 0.23
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (19 bp):
ATTTGTGGAACATAATCAA
Found at i:74864584 original size:15 final size:15
Alignment explanation
Indices: 74864547--74864585 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
74864537 GAATAACCTA
* *
74864547 AACCCTAAGCTTAAC
1 AACCCTAGGCCTAAC
74864562 AACCCTAGGCCTAAC
1 AACCCTAGGCCTAAC
74864577 AACCCTAGG
1 AACCCTAGG
74864586 AAGTCAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.36, C:0.36, G:0.13, T:0.15
Consensus pattern (15 bp):
AACCCTAGGCCTAAC
Found at i:74867474 original size:42 final size:42
Alignment explanation
Indices: 74867422--74867519 Score: 162
Period size: 42 Copynumber: 2.3 Consensus size: 42
74867412 ATAGCCCAGC
74867422 TATGGTCTTACA-AGAAATCTCATATTGATGCCATATCCTAGA
1 TATGGTCTTACACA-AAATCTCATATTGATGCCATATCCTAGA
* *
74867464 TGTGGTCTTACACAAAATCTCATATTGATGTCATATCCTAGA
1 TATGGTCTTACACAAAATCTCATATTGATGCCATATCCTAGA
74867506 TATGGTCTTACACA
1 TATGGTCTTACACA
74867520 TAGTCTCGGT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 51 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTCATATTGATGCCATATCCTAGA
Found at i:74868839 original size:85 final size:85
Alignment explanation
Indices: 74868696--74868874 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
74868686 GGCTGGCCAT
74868696 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
74868761 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
74868781 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
74868846 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
74868866 GAGCATGGG
1 GAGCATGGG
74868875 CAATAAAATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:74870330 original size:47 final size:47
Alignment explanation
Indices: 74870279--74870375 Score: 122
Period size: 47 Copynumber: 2.1 Consensus size: 47
74870269 TTAGGATTTT
* ** *
74870279 ATGTGATGGATGTAAACATGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTAAACATGAATATATGTGATAAGGCCAAATGGCCA
* * * *
74870326 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTAAACATGAATATATGTGATAAGGCCAAATGGCCA
74870373 ATG
1 ATG
74870376 CGAAACGTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTAAACATGAATATATGTGATAAGGCCAAATGGCCA
Found at i:74870438 original size:46 final size:46
Alignment explanation
Indices: 74870349--74870439 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
74870339 GAACATGAAT
* * * *
74870349 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
74870395 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
74870440 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:74870634 original size:37 final size:37
Alignment explanation
Indices: 74870584--74870674 Score: 173
Period size: 37 Copynumber: 2.5 Consensus size: 37
74870574 GGAAATATAT
*
74870584 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
74870621 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
74870658 TCCGGGTAAGACCCGAT
1 TCCGGGTAAGACCCGAT
74870675 NNNNNNNNNN
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:74873855 original size:15 final size:15
Alignment explanation
Indices: 74873835--74873867 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
74873825 TTTACTAAAT
74873835 TTAGCAAACAACTGC
1 TTAGCAAACAACTGC
74873850 TTAGCAAACAACTGC
1 TTAGCAAACAACTGC
74873865 TTA
1 TTA
74873868 TCTCTTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (15 bp):
TTAGCAAACAACTGC
Found at i:74877078 original size:42 final size:42
Alignment explanation
Indices: 74877028--74877108 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
74877018 AGCCCAGCTA
*
74877028 TGGTCTTACAAGAAATCTCATATCGATGCCATATCCTAGATG
1 TGGTCTTACAAGAAATCTCATAACGATGCCATATCCTAGATG
*
74877070 TGGTCTTACACGAAATCTCATAACGATGCCATATCCTAG
1 TGGTCTTACAAGAAATCTCATAACGATGCCATATCCTAG
74877109 TCTCGGTAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (42 bp):
TGGTCTTACAAGAAATCTCATAACGATGCCATATCCTAGATG
Found at i:74890110 original size:22 final size:22
Alignment explanation
Indices: 74890079--74890211 Score: 140
Period size: 22 Copynumber: 6.0 Consensus size: 22
74890069 ACTCTGCATA
*
74890079 ACATGCGAGCCTATATGTTAGT
1 ACATGTGAGCCTATATGTTAGT
*
74890101 ACATGAGAGCCTATATGTTAGT
1 ACATGTGAGCCTATATGTTAGT
* * * **
74890123 CCATGTGAGCTTGTACATTAGT
1 ACATGTGAGCCTATATGTTAGT
* ** *
74890145 ATATGCAAGCCTATACGTTAGT
1 ACATGTGAGCCTATATGTTAGT
* *
74890167 TCATGTGAACCTATATGTTAGT
1 ACATGTGAGCCTATATGTTAGT
*
74890189 ACATGTGAGCTTATATGTTAGT
1 ACATGTGAGCCTATATGTTAGT
74890211 A
1 A
74890212 TGTGCAAACC
Statistics
Matches: 88, Mismatches: 23, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 88 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (22 bp):
ACATGTGAGCCTATATGTTAGT
Found at i:74890194 original size:66 final size:66
Alignment explanation
Indices: 74890081--74890218 Score: 186
Period size: 66 Copynumber: 2.1 Consensus size: 66
74890071 TCTGCATAAC
* * * * *
74890081 ATGCGAGCCTATATGTTAGTACATGAGAGCCTATATGTTAGTCCATGTGAGCTTGTACATTAGTA
1 ATGCAAGCCTATACGTTAGTACATGAGAACCTATATGTTAGTACATGTGAGCTTATACATTAGTA
74890146 T
66 T
* * **
74890147 ATGCAAGCCTATACGTTAGTTCATGTGAACCTATATGTTAGTACATGTGAGCTTATATGTTAGTA
1 ATGCAAGCCTATACGTTAGTACATGAGAACCTATATGTTAGTACATGTGAGCTTATACATTAGTA
74890212 T
66 T
*
74890213 GTGCAA
1 ATGCAA
74890219 ACCCCTAAGG
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (66 bp):
ATGCAAGCCTATACGTTAGTACATGAGAACCTATATGTTAGTACATGTGAGCTTATACATTAGTA
T
Found at i:74890237 original size:15 final size:15
Alignment explanation
Indices: 74890217--74890257 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
74890207 TAGTATGTGC
74890217 AAACCCCTAAGGTGA
1 AAACCCCTAAGGTGA
*
74890232 AAACCCCTAAGGTGC
1 AAACCCCTAAGGTGA
74890247 AAACCCCTAAG
1 AAACCCCTAAG
74890258 TTTGTGAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.39, C:0.32, G:0.17, T:0.12
Consensus pattern (15 bp):
AAACCCCTAAGGTGA
Found at i:74892154 original size:20 final size:19
Alignment explanation
Indices: 74892107--74892152 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
74892097 TATGATCAAG
74892107 TAAATTTTGCTCAAAAATT
1 TAAATTTTGCTCAAAAATT
74892126 TAAATTTTGCTCAAAAATT
1 TAAATTTTGCTCAAAAATT
74892145 TAAATTTT
1 TAAATTTT
74892153 TGTCTCATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (19 bp):
TAAATTTTGCTCAAAAATT
Found at i:74894306 original size:17 final size:17
Alignment explanation
Indices: 74894286--74894324 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
74894276 TACATAAATG
*
74894286 ATATATATACAATAAAA
1 ATATATAAACAATAAAA
*
74894303 ATATATAAAGAATAAAA
1 ATATATAAACAATAAAA
74894320 ATATA
1 ATATA
74894325 AAATAATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (17 bp):
ATATATAAACAATAAAA
Found at i:74894388 original size:26 final size:25
Alignment explanation
Indices: 74894358--74894415 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
74894348 AAAATATACT
74894358 TATAATAAAAAAATATGATATTTAATA
1 TATAATAAAAAAATA-G-TATTTAATA
***
74894385 -ATAATTTTAAAATAGTATTTAATA
1 TATAATAAAAAAATAGTATTTAATA
74894409 TATAATA
1 TATAATA
74894416 TATAATAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
24 9 0.35
25 6 0.23
26 11 0.42
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (25 bp):
TATAATAAAAAAATAGTATTTAATA
Found at i:74894393 original size:12 final size:13
Alignment explanation
Indices: 74894375--74894423 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
74894365 AAAAAATATG
74894375 ATATTTAATAATA
1 ATATTTAATAATA
74894388 AT-TTTAA-AATA
1 ATATTTAATAATA
*
74894399 GTATTTAATATATA
1 ATATTTAATA-ATA
*
74894413 ATATATAATAA
1 ATATTTAATAA
74894424 CAAAAACAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:74894803 original size:7 final size:7
Alignment explanation
Indices: 74894791--74894845 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
74894781 ATATGTAAGA
74894791 ATAATAT
1 ATAATAT
74894798 ATAATAT
1 ATAATAT
74894805 AT-ATA-
1 ATAATAT
74894810 AGTAATAT
1 A-TAATAT
74894818 ATAA-A-
1 ATAATAT
74894823 ATAATTAT
1 ATAA-TAT
*
74894831 ATGATAT
1 ATAATAT
74894838 ATAATAT
1 ATAATAT
74894845 A
1 A
74894846 AAAATAAGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
5 5 0.12
6 5 0.12
7 26 0.65
8 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (7 bp):
ATAATAT
Found at i:74894803 original size:35 final size:33
Alignment explanation
Indices: 74894750--74894840 Score: 89
Period size: 33 Copynumber: 2.7 Consensus size: 33
74894740 TATATAGTAG
* *
74894750 TATAAAA-AATGACATAATA-ATATGAAAGTATATA
1 TATAAAATAATTATATAATATATAT--AAGTA-ATA
*
74894784 TGTAAGAATAA-TATATAATATATATAAGTAATA
1 TATAA-AATAATTATATAATATATATAAGTAATA
*
74894817 TATAAAATAATTATATGATATATA
1 TATAAAATAATTATATAATATATA
74894841 ATATAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
32 5 0.10
33 19 0.40
34 9 0.19
35 9 0.19
36 6 0.12
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.35
Consensus pattern (33 bp):
TATAAAATAATTATATAATATATATAAGTAATA
Found at i:74894817 original size:11 final size:10
Alignment explanation
Indices: 74894790--74894843 Score: 51
Period size: 9 Copynumber: 5.4 Consensus size: 10
74894780 TATATGTAAG
74894790 AATAATATAT
1 AATAATATAT
74894800 AAT-ATATAT
1 AATAATATAT
74894809 AAGTAATATAT
1 AA-TAATATAT
74894820 AA-AATA-ATT
1 AATAATATA-T
*
74894829 ATATGATATAT
1 A-ATAATATAT
74894840 AATA
1 AATA
74894844 TAAAAATAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
8 1 0.03
9 14 0.39
10 7 0.19
11 13 0.36
12 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (10 bp):
AATAATATAT
Found at i:74894825 original size:22 final size:22
Alignment explanation
Indices: 74894765--74894848 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 22
74894755 AAAATGACAT
*
74894765 AATAATATGAAAGTATATATGTAAG
1 AATAATAT-AAA--ATATATATAAG
*
74894790 AATAATATATAATATATATAAG
1 AATAATATAAAATATATATAAG
* *
74894812 TAAT-ATATAAAATAATTATATGAT
1 -AATAATATAAAAT-A-TATATAAG
74894836 ATATAATATAAAA
1 A-ATAATATAAAA
74894849 ATAAGATTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
22 18 0.37
23 5 0.10
24 10 0.20
25 16 0.33
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (22 bp):
AATAATATAAAATATATATAAG
Found at i:74901083 original size:12 final size:13
Alignment explanation
Indices: 74901065--74901113 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
74901055 AAAAAATATG
74901065 ATATTTAATAATA
1 ATATTTAATAATA
74901078 AT-TTTAA-AATA
1 ATATTTAATAATA
*
74901089 GTATTTAATATATA
1 ATATTTAATA-ATA
*
74901103 ATATATAATAA
1 ATATTTAATAA
74901114 CAAAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:74901112 original size:24 final size:24
Alignment explanation
Indices: 74901057--74901110 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
74901047 CTTATAATAA
*
74901057 AAAATATGATATTTAATAATAATTTT
1 AAAATA-G-TATTTAATAATAATTAT
74901083 AAAATAGTATTTAATATATAATATAT
1 AAAATAGTATTTAATA-ATAAT-TAT
74901109 AA
1 AA
74901111 TAACAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 9 0.36
25 6 0.24
26 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATAGTATTTAATAATAATTAT
Found at i:74901468 original size:7 final size:7
Alignment explanation
Indices: 74901456--74901516 Score: 51
Period size: 7 Copynumber: 9.1 Consensus size: 7
74901446 ATATGTAAGA
74901456 ATAATAT
1 ATAATAT
74901463 ATAATAT
1 ATAATAT
74901470 AT-ATAT
1 ATAATAT
74901476 AT-ATA-
1 ATAATAT
74901481 AGTAATAT
1 A-TAATAT
74901489 ATAA-A-
1 ATAATAT
74901494 ATAATTAT
1 ATAA-TAT
*
74901502 ATGATAT
1 ATAATAT
*
74901509 ATAGTAT
1 ATAATAT
74901516 A
1 A
74901517 AAAATAAGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
5 5 0.11
6 11 0.24
7 25 0.56
8 4 0.09
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (7 bp):
ATAATAT
Found at i:74901477 original size:15 final size:15
Alignment explanation
Indices: 74901459--74901516 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 15
74901449 TGTAAGAATA
74901459 ATATATAATATATAT
1 ATATATAATATATAT
74901474 ATATATAAGTA-ATAT
1 ATATATAA-TATATAT
*
74901489 ATAAAATAAT-TATAT
1 AT-ATATAATATATAT
*
74901504 GATATATAGTATA
1 -ATATATAATATA
74901517 AAAATAAGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
15 24 0.69
16 11 0.31
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.41
Consensus pattern (15 bp):
ATATATAATATATAT
Found at i:74907315 original size:40 final size:40
Alignment explanation
Indices: 74907206--74907393 Score: 272
Period size: 40 Copynumber: 4.7 Consensus size: 40
74907196 TATTTGGATG
* * *
74907206 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
74907246 A-ATTCCGGGCTAAG-CTCGAAGGCATTTGTGCGAGCTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74907285 ATATCCGGGCTAAGTCGCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74907325 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
74907365 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
74907394 AGCAAGTAGC
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 34 0.25
40 100 0.75
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74912474 original size:40 final size:40
Alignment explanation
Indices: 74912418--74912642 Score: 339
Period size: 40 Copynumber: 5.6 Consensus size: 40
74912408 CGGATGACAA
* *
74912418 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
74912458 CCGGGCTAAG-CTCCGAAGGCGTTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
*
74912498 CCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
74912538 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74912578 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
74912618 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74912643 AGCAAGTAGT
Statistics
Matches: 171, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 167 0.98
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74912554 original size:80 final size:80
Alignment explanation
Indices: 74912418--74912674 Score: 344
Period size: 80 Copynumber: 3.2 Consensus size: 80
74912408 CGGATGACAA
* * *
74912418 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CTCCGAAGGCGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTC-CCGAAGGCATT
74912481 TGTGCAAGTTACTATAT
64 TGTGCAAGTTACTATAT
*
74912498 CCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
74912563 TGCGAGTTACTATAT
66 TGCAAGTTACTATAT
* *
74912578 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCA-CCGGGCTAAGTCCCAAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCCGGGCTAAGTCCCGAAGGCATTT
* *
74912642 GAGCAAG-TAGTTATAT
65 GTGCAAGTTA-CTATAT
* *
74912658 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
74912675 ATGCTTGGGT
Statistics
Matches: 159, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
79 16 0.10
80 140 0.88
81 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGTTACTATAT
Found at i:74912657 original size:120 final size:120
Alignment explanation
Indices: 74912418--74912674 Score: 335
Period size: 120 Copynumber: 2.1 Consensus size: 120
74912408 CGGATGACAA
* *
74912418 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCTCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
* ** *
74912483 TGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAT
66 TGCAAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTTGAGCAAGTTACTATAT
* *
74912538 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCTGGGCTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGCT-CCGAAGGCATT
* *
74912601 TGTGCGAGTTACTATCA-CCGGGCTAAGTCCCAAAGGCATTTGAGCAAG-TAGTTATAT
64 TGTGCAAGTTACTAT-ATCCGGGCTAAGTCCCAAAGGCATTTGAGCAAGTTA-CTATAT
* *
74912658 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
74912675 ATGCTTGGGT
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
119 19 0.16
120 101 0.83
121 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
TGCAAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTTGAGCAAGTTACTATAT
Found at i:74912941 original size:22 final size:21
Alignment explanation
Indices: 74912900--74912943 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
74912890 GAATGTGCAT
74912900 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
74912922 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
74912944 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:74919230 original size:9 final size:9
Alignment explanation
Indices: 74919211--74919247 Score: 65
Period size: 9 Copynumber: 4.0 Consensus size: 9
74919201 TTTAGTACCT
74919211 AGAACTTGAA
1 AGAA-TTGAA
74919221 AGAATTGAA
1 AGAATTGAA
74919230 AGAATTGAA
1 AGAATTGAA
74919239 AGAATTGAA
1 AGAATTGAA
74919248 TGCTCAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 23 0.85
10 4 0.15
ACGTcount: A:0.54, C:0.03, G:0.22, T:0.22
Consensus pattern (9 bp):
AGAATTGAA
Found at i:74922894 original size:39 final size:39
Alignment explanation
Indices: 74922840--74922918 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
74922830 ACACTATGTA
74922840 TGATTATGCTAAACCTAATTTAATAGGAACTGAGTCAAG
1 TGATTATGCTAAACCTAATTTAATAGGAACTGAGTCAAG
* *
74922879 TGATTATTCTAAACCTAATTTAATAGGAACTGAGTTAAG
1 TGATTATGCTAAACCTAATTTAATAGGAACTGAGTCAAG
74922918 T
1 T
74922919 ATAGTTAGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (39 bp):
TGATTATGCTAAACCTAATTTAATAGGAACTGAGTCAAG
Found at i:74935808 original size:13 final size:13
Alignment explanation
Indices: 74935792--74935822 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
74935782 TGCAGTTTTT
*
74935792 ACACGGCCGTGTA
1 ACACGACCGTGTA
74935805 ACACGACCGTGTA
1 ACACGACCGTGTA
74935818 ACACG
1 ACACG
74935823 TCCATGTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.13
Consensus pattern (13 bp):
ACACGACCGTGTA
Found at i:74938021 original size:33 final size:33
Alignment explanation
Indices: 74937979--74938044 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
74937969 AAAGTCCATG
*
74937979 GTAACTCTTTCTCATTTCCA-TTCTGGTATTGTA
1 GTAACTCTTTCCCATTTCCATTTC-GGTATTGTA
74938012 GTAACTCTTTCCCATTTCCATTTCGGTATTGTA
1 GTAACTCTTTCCCATTTCCATTTCGGTATTGTA
74938045 ATTGGCTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.90
34 3 0.10
ACGTcount: A:0.18, C:0.23, G:0.12, T:0.47
Consensus pattern (33 bp):
GTAACTCTTTCCCATTTCCATTTCGGTATTGTA
Found at i:74941234 original size:41 final size:41
Alignment explanation
Indices: 74941072--74941297 Score: 270
Period size: 40 Copynumber: 5.6 Consensus size: 41
74941062 GCTACTCGTT
* *
74941072 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
74941112 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* *
74941152 CAAATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* *
74941191 CAAATGCCTTC-GGATCTTAGTCCGGATATTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAACTCGCA
* * * *
74941232 CAAATGCCTTC-GGATCTTAGTCCGGATA-TGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
74941273 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74941298 CATCATTCAA
Statistics
Matches: 167, Mismatches: 12, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 79 0.47
41 53 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:74941237 original size:80 final size:80
Alignment explanation
Indices: 74941072--74941297 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 80
74941062 GCTACTCGTT
* *
74941072 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
74941137 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* * **
74941152 CAAATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCAGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
74941214 GGATATTAGTATCTCGCA
64 GGAT-TTAGTAACTCGCA
* * * * * *
74941232 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCAGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
74941295 GGA
64 GGA
74941298 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 4 0.03
79 43 0.34
80 36 0.29
81 30 0.24
82 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:74945663 original size:26 final size:25
Alignment explanation
Indices: 74945634--74945718 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 25
74945624 AAAATGAAAT
74945634 AAAGAATAAATAAAAGAAAGAAAAAA
1 AAAGAATAAA-AAAAGAAAGAAAAAA
*
74945660 AAAGAA-AAAGAAACAGAGAAGAAACGAA
1 AAAGAATAAA-AAA-AGA-AAGAAA-AAA
* * *
74945688 ATAGAAATAAAGAAAG-AAGAAAAGA
1 AAAG-AATAAAAAAAGAAAGAAAAAA
74945713 AAAGAA
1 AAAGAA
74945719 AAAGGAGAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
24 2 0.04
25 10 0.21
26 15 0.32
27 6 0.13
28 7 0.15
29 4 0.09
30 3 0.06
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (25 bp):
AAAGAATAAAAAAAGAAAGAAAAAA
Found at i:74945667 original size:5 final size:5
Alignment explanation
Indices: 74945645--74945720 Score: 50
Period size: 5 Copynumber: 14.8 Consensus size: 5
74945635 AAGAATAAAT
* * *
74945645 AAAAG -AAAG AAAAA AAAAG AAAAAG AAACAG AGAAG AAACG AAATAG
1 AAAAG AAAAG AAAAG AAAAG -AAAAG AAA-AG AAAAG AAAAG AAA-AG
*
74945692 AAATA- AAGAA- AGAAG AAAAG AAAAG AAAA
1 AAA-AG AA-AAG AAAAG AAAAG AAAAG AAAA
74945721 AGGAGAAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 6 0.11
5 35 0.61
6 16 0.28
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:74945727 original size:26 final size:25
Alignment explanation
Indices: 74945646--74945728 Score: 78
Period size: 26 Copynumber: 3.1 Consensus size: 25
74945636 AGAATAAATA
* *
74945646 AAAGAAAGAAAAAAAAAGAAAAAGAA
1 AAAG-AAGAAAAGAAAAGAAAAAGAG
*
74945672 ACAGAGAAGAAACGAAATAGAAATAA-AG
1 A-A-AGAAGAAAAGAAA-AGAAA-AAGAG
74945700 AAAGAAGAAAAGAAAAGAAAAAGGAG
1 AAAGAAGAAAAGAAAAGAAAAA-GAG
74945726 AAA
1 AAA
74945729 TTAGGGTTTG
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
24 2 0.04
25 5 0.11
26 18 0.38
27 11 0.23
28 9 0.19
29 2 0.04
ACGTcount: A:0.75, C:0.02, G:0.20, T:0.02
Consensus pattern (25 bp):
AAAGAAGAAAAGAAAAGAAAAAGAG
Found at i:74948329 original size:40 final size:40
Alignment explanation
Indices: 74948229--74948400 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
74948219 GCTCCTCGTT
* * *
74948229 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
74948269 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
74948308 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
74948348 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
74948388 CAAATGCCTTCGG
1 CAAATGCCTTCGG
74948401 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:74956274 original size:40 final size:40
Alignment explanation
Indices: 74956174--74956345 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
74956164 GCTCCTCGTT
* * * *
74956174 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
74956214 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
74956253 CGAATGCCTTCAGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
74956293 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
74956333 CAAATGCCTTCGG
1 CAAATGCCTTCGG
74956346 ATCTTAGTCT
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74956382 original size:40 final size:43
Alignment explanation
Indices: 74956330--74956435 Score: 119
Period size: 50 Copynumber: 2.3 Consensus size: 43
74956320 TTTGTATCTC
74956330 GCACAAATGCCTTCGGA-T-C-TTAGTCTGGGTATATTCACTTA
1 GCACAAA-GCCTTCGGACTCCGTTAGTCTGGGTATATTCACTTA
74956371 GCACAAAGCCTTCGGGACTTAGCCCGGATTAGTCTGGGTATATTCACTTA
1 GCACAAAGCCTTC-GGAC-T---CC-G-TTAGTCTGGGTATATTCACTTA
74956421 GCACAAAGCCTTCGG
1 GCACAAAGCCTTCGG
74956436 GACTTAGCCC
Statistics
Matches: 55, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
40 6 0.11
41 10 0.18
43 1 0.02
47 1 0.02
49 2 0.04
50 35 0.64
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (43 bp):
GCACAAAGCCTTCGGACTCCGTTAGTCTGGGTATATTCACTTA
Found at i:74956420 original size:50 final size:50
Alignment explanation
Indices: 74956349--74956448 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
74956339 CCTTCGGATC
74956349 TTAGTCTGGGTATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TTAGTCTGGGTATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
74956399 TTAGTCTGGGTATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TTAGTCTGGGTATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
74956449 CAGCATTCAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (50 bp):
TTAGTCTGGGTATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
Found at i:74960157 original size:6 final size:6
Alignment explanation
Indices: 74960148--74960210 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
74960138 AATAAAATTG
* * * * *
74960148 AAATGA AAATCA AAATCA AAAGAA ATATAA AAAT-A AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
74960195 GAATAA ATAATAA AAA
1 AAATAA A-AATAA AAA
74960211 AATAGGAGGA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
5 5 0.11
6 36 0.77
7 6 0.13
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:74960185 original size:17 final size:17
Alignment explanation
Indices: 74960153--74960201 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
74960143 AATTGAAATG
*
74960153 AAAATCAAAATCAAAAGA
1 AAAATAAAAAT-AAAAGA
* *
74960171 AATATAAAAATAAAATA
1 AAAATAAAAATAAAAGA
*
74960188 AAAATAAGAATAAA
1 AAAATAAAAATAAA
74960202 TAATAAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (17 bp):
AAAATAAAAATAAAAGA
Found at i:74960191 original size:29 final size:31
Alignment explanation
Indices: 74960148--74960210 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
74960138 AATAAAATTG
*
74960148 AAATGAAAATCAAAATCAA-AAGAAAT-ATAA
1 AAATGAAAATAAAAAT-AAGAAGAAATAATAA
*
74960178 AAAT-AAAATAAAAATAAGAATAAATAATAA
1 AAATGAAAATAAAAATAAGAAGAAATAATAA
74960208 AAA
1 AAA
74960211 AATAGGAGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 2 0.07
29 16 0.55
30 11 0.38
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (31 bp):
AAATGAAAATAAAAATAAGAAGAAATAATAA
Done.