Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 225 of 276
Found at i:74975777 original size:119 final size:120
Alignment explanation
Indices: 74975567--74975782 Score: 278
Period size: 119 Copynumber: 1.8 Consensus size: 120
74975557 TCCTCGTTCA
* *
74975567 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
* *
74975632 TTAGTAACTCGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
74975687 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-AGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
* * *
74975749 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
64 ATATAGTAAC-TAGCACAAATGCCATCGGGACTTA
74975783 GCCCAGACAT
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.04
119 59 0.72
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:74975783 original size:40 final size:40
Alignment explanation
Indices: 74975565--74975786 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
74975555 GCTCCTCGTT
* *
74975565 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
74975605 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
74975645 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
74975685 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
74975724 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
74975765 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
74975787 AGACATCATT
Statistics
Matches: 157, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 31 0.20
40 114 0.73
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:74985542 original size:44 final size:43
Alignment explanation
Indices: 74985479--74985835 Score: 462
Period size: 44 Copynumber: 8.1 Consensus size: 43
74985469 TGGAGATAGT
* *
74985479 AGATTTGGCGCCTCTGTATTGACAGAGAGCAGATCGAATATGAC
1 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGAT-AC
* ** *
74985523 AGATTTGGAGTCTCTGTATTGTTAGAGAGCAGATTGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATA-C
* *
74985567 ATATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATAGC
1 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATA-C
* * * * ** *
74985611 AGATTTGACGTCTCTGTATCGACGGGGAGCAGATAAAAAATAAC
1 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGAT-AC
*
74985655 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATTGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATA-C
74985699 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGAC
1 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGAT-AC
* *
74985743 AGATTTGGCGTCTCTGTGTTGACAGAGAGCAGATCGAAGAAGAC
1 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG-ATAC
*
74985787 AGATTTGGCGTCTCTGTATTAGCCAGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATT-GACAGAGAGCAGATCGAAGATA-C
74985832 AGAT
1 AGAT
74985836 CTGACATTCG
Statistics
Matches: 274, Mismatches: 32, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.01
44 246 0.90
45 26 0.09
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (43 bp):
AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAC
Found at i:74985891 original size:90 final size:89
Alignment explanation
Indices: 74985497--74985941 Score: 360
Period size: 88 Copynumber: 5.0 Consensus size: 89
74985487 CGCCTCTGTA
* * * ** *
74985497 TTGACAGAGAGCAGATCGAATATGACAGATTTGGAGTCTCTGTATT-GTTAGAGAGCAGATTGAA
1 TTGACAGAGAGCAGATCGAAGAAGACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGAA
* * * *
74985561 GATAGCATATTTGGCGTCTCTGTA--
66 GATAGCAGATCTGACAT-TC-GTATG
* * * * * **
74985585 TTGACAGAGAGCAGATCAAAGATAG-CAGATTTGACGTCTCTGTA-TCGACGGGGAGCAGATAAA
1 TTGACAGAGAGCAGATCGAAGA-AGACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGA
* * * * *
74985648 AAATAACAGATTTGGCGTCTCTGTA--
65 AGATAGCAGATCTGACAT-TC-GTATG
*
74985673 TTGACAGAGAGCAGATTGAAGATAG-CAGATTTGGCGTCTCTGTATT-GACAGAGAGCAGATCGA
1 TTGACAGAGAGCAGATCGAAGA-AGACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGA
* * * *
74985736 AGAT-GACAGATTTGGCGTCTC-TGTG
65 AGATAG-CAGATCTGACAT-TCGTATG
*
74985761 TTGACAGAGAGCAGATCGAAGAAGACAGATTTGGCGTCTCTGTATTAGCCAGAGAGCAGATCGAA
1 TTGACAGAGAGCAGATCGAAGAAGACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGAA
74985826 GATAGCAGATCTGACATTCGTATG
66 GATAGCAGATCTGACATTCGTATG
* * * * * *
74985850 TTCG-CATCGA-AGTAGATCGAA-AATGACAGATTTGGCATCTCTGTGTTAGACGGGGAACAGAT
1 TT-GACA--GAGAGCAGATCGAAGAA-GACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGAT
* *
74985912 CGAAGATAGTAGATCTGACATTTGTATG
62 CGAAGATAGCAGATCTGACATTCGTATG
74985940 TT
1 TT
74985942 TATATCGAAG
Statistics
Matches: 304, Mismatches: 39, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
86 1 0.00
87 3 0.01
88 186 0.61
89 40 0.13
90 72 0.24
91 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (89 bp):
TTGACAGAGAGCAGATCGAAGAAGACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGAA
GATAGCAGATCTGACATTCGTATG
Found at i:74985949 original size:90 final size:90
Alignment explanation
Indices: 74985698--74985975 Score: 273
Period size: 90 Copynumber: 3.1 Consensus size: 90
74985688 TTGAAGATAG
* * * * * *
74985698 CAGATTTGGCGTCTCTGTATT-GACAGAGAGCAGATCGAAGAT-GACAGATTTGGCGTCTC-TGT
1 CAGATTTGGCATCTCTGTATTAGACAGAGAACAGATCGAAGATAG-CAGATCTGACAT-TCGTAT
*
74985760 GTTGACA--GAGAGCAGATCGAAGAA-GA
64 GTTCACATCGA-AGCAGATCGAA-AATGA
* * *
74985786 CAGATTTGGCGTCTCTGTATTAGCCAGAGAGCAGATCGAAGATAGCAGATCTGACATTCGTATGT
1 CAGATTTGGCATCTCTGTATTAGACAGAGAACAGATCGAAGATAGCAGATCTGACATTCGTATGT
* *
74985851 TCGCATCGAAGTAGATCGAAAATGA
66 TCACATCGAAGCAGATCGAAAATGA
* * * * *
74985876 CAGATTTGGCATCTCTGTGTTAGACGGGGAACAGATCGAAGATAGTAGATCTGACATTTGTATGT
1 CAGATTTGGCATCTCTGTATTAGACAGAGAACAGATCGAAGATAGCAGATCTGACATTCGTATGT
* * *
74985941 TTATATCGAAGCAGA-CTGAAGATGA
66 TCACATCGAAGCAGATC-GAAAATGA
*
74985966 CATATTTGGC
1 CAGATTTGGC
74985976 CTCTTTGTTT
Statistics
Matches: 161, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
88 23 0.14
89 39 0.24
90 97 0.60
91 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (90 bp):
CAGATTTGGCATCTCTGTATTAGACAGAGAACAGATCGAAGATAGCAGATCTGACATTCGTATGT
TCACATCGAAGCAGATCGAAAATGA
Found at i:74986002 original size:90 final size:90
Alignment explanation
Indices: 74985682--74986008 Score: 267
Period size: 90 Copynumber: 3.7 Consensus size: 90
74985672 ATTGACAGAG
* * *
74985682 AGCAGATTGAAGAT-AGCAGATTTGGCGTCTCTGTATT-GAC-AGAGAGCAGATCGAAGAT-GAC
1 AGCAGATCGAAGATGA-CAGATTTGGCATCTCTGTATTAGGCAAG-GAGCAGATCGAAGATAG-C
* * * * *
74985743 AGATTTGGCGTCTC-TGTGTTGACA--GA
63 AGATCTGACAT-TCGTATGTTCACATCGA
* * *
74985769 GAGCAGATCGAAGAAGACAGATTTGGCGTCTCTGTATTA-GCCAGAGAGCAGATCGAAGATAGCA
1 -AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGGCAAG-GAGCAGATCGAAGATAGCA
*
74985833 GATCTGACATTCGTATGTTCGCATCGA
64 GATCTGACATTCGTATGTTCACATCGA
* * * * ** * *
74985860 AGTAGATCGAAAATGACAGATTTGGCATCTCTGTGTTAGACGGGGAACAGATCGAAGATAGTAGA
1 AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGGCAAGGAGCAGATCGAAGATAGCAGA
* * *
74985925 TCTGACATTTGTATGTTTATATCGA
66 TCTGACATTCGTATGTTCACATCGA
* * * * * *
74985950 AGCAGA-CTGAAGATGACATATTTGGCCTCTTTGTTTTAGGCAAGGAGTAGATCAAAGAT
1 AGCAGATC-GAAGATGACAGATTTGGCATCTCTGTATTAGGCAAGGAGCAGATCGAAGAT
74986009 TTCAGCATGG
Statistics
Matches: 195, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
88 36 0.18
89 36 0.18
90 119 0.61
91 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGGCAAGGAGCAGATCGAAGATAGCAGA
TCTGACATTCGTATGTTCACATCGA
Found at i:74987592 original size:20 final size:22
Alignment explanation
Indices: 74987538--74987592 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 22
74987528 ATTTTAATCC
74987538 TTTTATATATACATTTTACATATA
1 TTTTATATAT--ATTTTACATATA
*
74987562 ATTTAT-T-TATTTTA-A-ATA
1 TTTTATATATATTTTACATATA
74987580 TTTTATATATATT
1 TTTTATATATATT
74987593 ATTTATTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
18 8 0.30
19 2 0.07
20 10 0.37
22 1 0.04
23 1 0.04
24 5 0.19
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTATATATATTTTACATATA
Found at i:74987694 original size:21 final size:21
Alignment explanation
Indices: 74987676--74987718 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
74987666 TCGTATTACT
*
74987676 TATATTTCATTGTATATTATA
1 TATATTTCATTATATATTATA
*
74987697 TATATTTTATTATATATTATA
1 TATATTTCATTATATATTATA
74987718 T
1 T
74987719 TTTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
TATATTTCATTATATATTATA
Found at i:74987709 original size:14 final size:14
Alignment explanation
Indices: 74987690--74987787 Score: 58
Period size: 14 Copynumber: 6.4 Consensus size: 14
74987680 TTTCATTGTA
74987690 TATTATATATATTT
1 TATTATATATATTT
74987704 TATTATATATTATATTT
1 TA-T-TATA-TATATTT
74987721 TATTATATAT-TGTT
1 TATTATATATAT-TT
74987735 CT-TTATATTATCTTCATTT
1 -TATTATA-TA---T-ATTT
74987754 TATTATATATTATTT
1 TATTATATA-TATTT
*
74987769 TATTATTTAT-TATT
1 TATTATATATAT-TT
74987783 TATTA
1 TATTA
74987788 GCATATATAT
Statistics
Matches: 70, Mismatches: 1, Indels: 26
0.72 0.01 0.27
Matches are distributed among these distances:
13 2 0.03
14 20 0.29
15 20 0.29
16 7 0.10
17 9 0.13
18 4 0.06
19 7 0.10
20 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (14 bp):
TATTATATATATTT
Found at i:74987713 original size:33 final size:31
Alignment explanation
Indices: 74987676--74987779 Score: 106
Period size: 33 Copynumber: 3.2 Consensus size: 31
74987666 TCGTATTACT
74987676 TATATTTCATTGTATATTATATATATTTTATTA
1 TATATTTCATT-T-TATTATATATATTTTATTA
74987709 TATATTAT-ATTTTATTATATAT-TGTTCT-TTA
1 TATATT-TCATTTTATTATATATAT-TT-TATTA
74987740 TATTATCTTCATTTTATTATATATTATTTTATTA
1 TA-TAT-TTCATTTTATTATATA-TATTTTATTA
*
74987774 TTTATT
1 TATATT
74987780 ATTTATTAGC
Statistics
Matches: 61, Mismatches: 1, Indels: 19
0.75 0.01 0.23
Matches are distributed among these distances:
30 1 0.02
31 17 0.28
32 7 0.11
33 27 0.44
34 8 0.13
35 1 0.02
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (31 bp):
TATATTTCATTTTATTATATATATTTTATTA
Found at i:74987719 original size:17 final size:17
Alignment explanation
Indices: 74987693--74987781 Score: 84
Period size: 17 Copynumber: 5.5 Consensus size: 17
74987683 CATTGTATAT
74987693 TATA-TATATTTTATTA
1 TATATTATATTTTATTA
74987709 TATATTATATTTTATTA
1 TATATTATATTTTATTA
*
74987726 TATATTGT-TCTTTA-TA
1 TATATTATAT-TTTATTA
74987742 T-TATCT-TCATTTTATTA
1 TATAT-TAT-ATTTTATTA
74987759 TATA-T-TATTTTATTA
1 TATATTATATTTTATTA
*
74987774 TTTATTAT
1 TATATTAT
74987782 TTATTAGCAT
Statistics
Matches: 62, Mismatches: 2, Indels: 17
0.77 0.02 0.21
Matches are distributed among these distances:
15 16 0.26
16 16 0.26
17 28 0.45
18 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (17 bp):
TATATTATATTTTATTA
Found at i:74987766 original size:7 final size:7
Alignment explanation
Indices: 74987752--74987787 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
74987742 TTATCTTCAT
74987752 TTTATTA
1 TTTATTA
*
74987759 TATATTA
1 TTTATTA
74987766 TTTTATTA
1 -TTTATTA
74987774 TTTATTA
1 TTTATTA
74987781 TTTATTA
1 TTTATTA
74987788 GCATATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTATTA
Found at i:74987778 original size:19 final size:19
Alignment explanation
Indices: 74987630--74987782 Score: 52
Period size: 21 Copynumber: 7.7 Consensus size: 19
74987620 ATGTAAAAAA
74987630 ATTA-TTATAT-TTATTTT
1 ATTATTTATATATTATTTT
*
74987647 -TTATTTATGTGATTATTTATCGT
1 ATTATTTATAT-ATTA-TT-T--T
* *
74987670 ATTACTTATAT-TTCATTGT
1 ATTATTTATATATT-ATTTT
74987689 A-TA-TTATATA-TATTTT
1 ATTATTTATATATTATTTT
*
74987705 ATTATATATTATATTTTATTATAT
1 A-T-TAT-TTATATATTATT-T-T
* * *
74987729 ATTGTTCTTTATATTATCTTC
1 ATTATT-TATATATTAT-TTT
*
74987750 ATTTTATTATATATTATTTT
1 ATTAT-TTATATATTATTTT
74987770 ATTATTTAT-TATT
1 ATTATTTATATATT
74987783 TATTAGCATA
Statistics
Matches: 101, Mismatches: 14, Indels: 41
0.65 0.09 0.26
Matches are distributed among these distances:
16 8 0.08
17 12 0.12
18 6 0.06
19 11 0.11
20 8 0.08
21 21 0.21
22 20 0.20
23 5 0.05
24 10 0.10
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (19 bp):
ATTATTTATATATTATTTT
Found at i:74990803 original size:20 final size:20
Alignment explanation
Indices: 74990763--74990803 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
74990753 CTTCTAATTG
*
74990763 TATTTATATATATTATTATA
1 TATTTATATATAATATTATA
74990783 TATTTATATA-AATATTGATA
1 TATTTATATATAATATT-ATA
74990803 T
1 T
74990804 GCTAATCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TATTTATATATAATATTATA
Found at i:74991315 original size:15 final size:15
Alignment explanation
Indices: 74991295--74991324 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74991285 TTTTAATTAA
*
74991295 AATTAAATTTAATTT
1 AATTAAATTAAATTT
74991310 AATTAAATTAAATTT
1 AATTAAATTAAATTT
74991325 TATGAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATTAAATTAAATTT
Found at i:74991326 original size:21 final size:21
Alignment explanation
Indices: 74991286--74991324 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
74991276 TGATGTTCTT
74991286 TTTAATTAAAATTAAATTTAA
1 TTTAATTAAAATTAAATTTAA
74991307 TTTAATT-AAATTAAATTT
1 TTTAATTAAAATTAAATTT
74991325 TATGAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTAATTAAAATTAAATTTAA
Found at i:74993878 original size:47 final size:46
Alignment explanation
Indices: 74993809--74994029 Score: 225
Period size: 47 Copynumber: 4.7 Consensus size: 46
74993799 ATTTGTGTGT
* * *
74993809 TAGTGTAAGACATGTCTGGGACATGGCATTGGCATTGAGACGAAAGC
1 TAGTGTAAGACATGTCTGGGACATGGCATCGGC-TCGAGATGAAAGC
* *
74993856 TAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGATGTAAGC
1 TAGTGTAAGACATGTCTGGGACATGGCATC-GGCTCGAGATGAAAGC
* *
74993902 CAGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGTGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGGCATCGGCT-CGAGA--TGAAAGC
* * *
74993950 TAGTGTAAGACCATGTCTGGGACATGTCATCGACTTGATGGATG--AGC
1 TAGTGTAAGA-CATGTCTGGGACATGGCATCGGCTCGA--GATGAAAGC
* *
74993997 CAGTGTAAGACCATGTCTGGGATATGGCATCGG
1 TAGTGTAAGA-CATGTCTGGGACATGGCATCGG
74994030 TATTATACCT
Statistics
Matches: 149, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
45 3 0.02
46 47 0.32
47 58 0.39
48 14 0.09
49 18 0.12
50 7 0.05
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGGCATCGGCTCGAGATGAAAGC
Found at i:74995786 original size:46 final size:45
Alignment explanation
Indices: 74995655--74995871 Score: 142
Period size: 46 Copynumber: 4.7 Consensus size: 45
74995645 GTCAGGTGCT
* *
74995655 GATGCAATGTCCCAGACATGGTCTTACACTGGCA-CATCTCGTA-GCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTAGCATCGTCTCG-AGGCC
* *
74995701 GATGCATGTTCCAGACATGTC-TACCACTGGCTTAT-GTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTA-CACTAGC--ATCGTCTCGAGGCC
* * * *
74995747 AATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCA-TCGTCTCGAGGCC
* * * *
74995793 GATGCCATGTCCCAGACGTGGTCTTACA-TTG-ACTC-TCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCA-TCGTC-T--CGAGGCC
* *
74995841 GATGCATGTTCCAGGCATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
74995872 TCACAGAAGT
Statistics
Matches: 136, Mismatches: 20, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
43 2 0.01
44 11 0.08
45 16 0.12
46 63 0.46
47 30 0.22
48 14 0.10
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATCGTCTCGAGGCC
Found at i:75008631 original size:17 final size:17
Alignment explanation
Indices: 75008606--75008639 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75008596 AATATTACTA
75008606 AAAACTGTAAAAAATAT
1 AAAACTGTAAAAAATAT
* *
75008623 AAAATTGTAAAGAATAT
1 AAAACTGTAAAAAATAT
75008640 TTAGAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAACTGTAAAAAATAT
Found at i:75013540 original size:46 final size:46
Alignment explanation
Indices: 75013385--75013649 Score: 198
Period size: 46 Copynumber: 5.7 Consensus size: 46
75013375 GGGTTATATT
* *
75013385 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-TACGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAGTA--TG
* * * * * *
75013434 TGCTGATGCATGTCCCAGATATGTCTTACACTAGCACATC-T-CT-TA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC-TCATAGTATG
* * *
75013479 GCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCATAGTATG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAGTATG
* * * * * * *
75013525 GCTGATGCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTGGAT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-AGTATG
* * *
75013571 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAGTATG
* * *
75013619 GCCAAAGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
75013650 AGCGCACAAA
Statistics
Matches: 168, Mismatches: 38, Indels: 22
0.74 0.17 0.10
Matches are distributed among these distances:
43 2 0.01
44 30 0.18
45 1 0.01
46 49 0.29
47 30 0.18
48 36 0.21
49 14 0.08
50 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAGTATG
Found at i:75013630 original size:94 final size:93
Alignment explanation
Indices: 75013384--75013652 Score: 321
Period size: 94 Copynumber: 2.9 Consensus size: 93
75013374 TGGGTTATAT
* * *
75013384 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCTGATGCATGTCC
* *
75013449 CAGATATGTCTTACACTAGCACATCTCTTA
64 CAGACATGTCTTACACTAGCACATCTCTGA
* * * * *
75013479 -GCCGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCA
* *
75013541 AACATGTCTTACACTAGC-CCTCGTCTGGA
66 GACATGTCTTACACTAGCACATC-TCT-GA
* ** * *
75013570 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCAAAGCATGTCCTA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCA
75013635 GACATGTCTTACACTAGC
66 GACATGTCTTACACTAGC
75013653 GCACAAATCA
Statistics
Matches: 146, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
89 3 0.02
90 35 0.24
91 2 0.01
92 26 0.18
93 22 0.15
94 58 0.40
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACATCTCTGA
Found at i:75021035 original size:44 final size:47
Alignment explanation
Indices: 75020977--75021099 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 47
75020967 AAGCGTGCTA
*
75020977 ATGCATGTCCCAAACATGTCTTACACTAGCACATCTCT-T-A-GCCG
1 ATGCATGTCCCAAACATGTCTTACACTGGCACATCTCTGTCAGGCCG
* * *
75021021 ATGCGTGTCCCAAACACGTCTTACACTGGC-TATCTCTGTCGAGGCCG
1 ATGCATGTCCCAAACATGTCTTACACTGGCACATCTCTGTC-AGGCCG
* *
75021068 ATGCATGTCCTAGACATGTCTTACACTGGCAC
1 ATGCATGTCCCAAACATGTCTTACACTGGCAC
75021100 TCATTTTCCA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
43 6 0.09
44 28 0.43
46 1 0.02
47 30 0.46
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
ATGCATGTCCCAAACATGTCTTACACTGGCACATCTCTGTCAGGCCG
Found at i:75021133 original size:91 final size:93
Alignment explanation
Indices: 75020927--75021148 Score: 233
Period size: 91 Copynumber: 2.4 Consensus size: 93
75020917 TATATTGCCG
* * * *
75020927 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATAAGCGTGCTAATGCATGTCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAT-AGCGGGCCAATGCATGTCCCAAAC
*
75020992 ATGTCTTACACTAGCACATCTCTTAGCCG
65 ATGTCTTACACTAGCACATCTCTTAGCCA
* * * * * * *
75021021 ATG-CGTGTCCCAAACA-CGTCTTACACTGGCTATC-TCT-GTCGAGGCCGATGCATGTCCTAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATAG-CG-GGCCAATGCATGTCCCAAA
* *
75021082 CATGTCTTACACTGGCAC-TCAT-TT-TCCA
64 CATGTCTTACACTAGCACATC-TCTTAGCCA
75021110 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA
75021149 GTATGGCTGA
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
89 6 0.06
90 17 0.16
91 51 0.49
92 17 0.16
93 10 0.10
94 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATAGCGGGCCAATGCATGTCCCAAACA
TGTCTTACACTAGCACATCTCTTAGCCA
Found at i:75023277 original size:46 final size:44
Alignment explanation
Indices: 75023227--75023339 Score: 120
Period size: 46 Copynumber: 2.5 Consensus size: 44
75023217 CGTATGCTAG
75023227 TGTAAGACATGTCTGGGACATGCATCAGGCT-CGAGATGTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATC-GGCTACGAGATGT--GCCAA
* * * * ** *
75023273 TGTAAGGCTTGTTTGGGACATGCATCGGCTACGAGCTGTGTTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAA
75023317 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
75023340 ATATCTGTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
44 8 0.15
45 17 0.31
46 30 0.55
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAA
Found at i:75024091 original size:20 final size:20
Alignment explanation
Indices: 75024066--75024103 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
75024056 TGATGGGGGG
75024066 CAAGAATATC-AAGTTGGATT
1 CAAGAA-ATCAAAGTTGGATT
75024086 CAAGAAATCAAAGTTGGA
1 CAAGAAATCAAAGTTGGA
75024104 GGAGAGAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.24
Consensus pattern (20 bp):
CAAGAAATCAAAGTTGGATT
Found at i:75026050 original size:46 final size:46
Alignment explanation
Indices: 75025998--75026179 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
75025988 AGTGTGCTCT
*
75025998 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
75026044 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
75026090 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
75026136 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
75026180 TCATGTCAAA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 123 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:75037436 original size:21 final size:21
Alignment explanation
Indices: 75037410--75037452 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
75037400 TTTGGGTGGA
*
75037410 TCAGCTCTCACGAGCTTTTGT
1 TCAGCTCTCACGAGCTTCTGT
75037431 TCAGCTCTCACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
75037452 T
1 T
75037453 GGCATGTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.30, G:0.19, T:0.37
Consensus pattern (21 bp):
TCAGCTCTCACGAGCTTCTGT
Found at i:75040619 original size:6 final size:6
Alignment explanation
Indices: 75040599--75040635 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
75040589 CAGCACAGAG
75040599 AAAAAT -AAAAT -AAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
75040636 GAACACACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:75044894 original size:6 final size:6
Alignment explanation
Indices: 75044883--75044933 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
75044873 CCAGTTTGAG
75044883 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
75044931 AAA
1 AAA
75044934 GAACACACAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:75045111 original size:21 final size:21
Alignment explanation
Indices: 75045087--75045129 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
75045077 GGATTGAAAC
75045087 ACCTTATCCTAATCAAAATAA
1 ACCTTATCCTAATCAAAATAA
*
75045108 ACCTTATCCTAATCAATATAA
1 ACCTTATCCTAATCAAAATAA
75045129 A
1 A
75045130 ATAGATGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (21 bp):
ACCTTATCCTAATCAAAATAA
Found at i:75046558 original size:24 final size:23
Alignment explanation
Indices: 75046516--75046567 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
75046506 CATGAATATT
75046516 ATATATATAATAATGTATAAAAA
1 ATATATATAATAATGTATAAAAA
* *
75046539 CATATATATAA-AATATTATACAAA
1 -ATATATATAATAAT-GTATAAAAA
75046563 ATATA
1 ATATA
75046568 AAACAATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (23 bp):
ATATATATAATAATGTATAAAAA
Found at i:75046724 original size:17 final size:16
Alignment explanation
Indices: 75046693--75046734 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
75046683 CTTTTTCTTT
*
75046693 TAAAAAAAATGAATTA
1 TAAAAAAAATCAATTA
75046709 TAAAAAAAAGTCAATTA
1 TAAAAAAAA-TCAATTA
*
75046726 -AAATAAAAT
1 TAAAAAAAAT
75046735 TAAAATGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 1 0.04
16 16 0.70
17 6 0.26
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (16 bp):
TAAAAAAAATCAATTA
Found at i:75051753 original size:47 final size:47
Alignment explanation
Indices: 75051682--75051849 Score: 273
Period size: 47 Copynumber: 3.6 Consensus size: 47
75051672 CCCTTCGGGA
* * * *
75051682 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
75051729 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
75051776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
75051823 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
75051850 TATTCAAATA
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:75051760 original size:25 final size:25
Alignment explanation
Indices: 75051732--75051810 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
75051722 ACTCGGCCCT
75051732 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
75051757 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
75051779 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
75051804 ATCACAT
1 ATCACAT
75051811 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:75058158 original size:21 final size:20
Alignment explanation
Indices: 75058124--75058162 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
75058114 ATATAAATGA
75058124 ATTTAATATCAATTTAATCC
1 ATTTAATATCAATTTAATCC
*
75058144 ATTTCATATTCAATTTAAT
1 ATTTAATA-TCAATTTAAT
75058163 TCAATTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTAATATCAATTTAATCC
Found at i:75059083 original size:18 final size:18
Alignment explanation
Indices: 75059060--75059096 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
75059050 TTGTTACAAC
75059060 TCTCCCGCCTTAAAGAAT
1 TCTCCCGCCTTAAAGAAT
75059078 TCTCCCGCCTTAAAGAAT
1 TCTCCCGCCTTAAAGAAT
75059096 T
1 T
75059097 TTCGTCCTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.32, G:0.11, T:0.30
Consensus pattern (18 bp):
TCTCCCGCCTTAAAGAAT
Found at i:75067767 original size:16 final size:15
Alignment explanation
Indices: 75067731--75067778 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
75067721 TATATAAACG
*
75067731 AATTTAATGTCAATTT
1 AATTTAAT-TCAATTC
* *
75067747 GATTTATTTCATATTC
1 AATTTAATTCA-ATTC
75067763 AATTTAATTCAATTC
1 AATTTAATTCAATTC
75067778 A
1 A
75067779 CATCCTAAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 8 0.31
16 18 0.69
ACGTcount: A:0.35, C:0.10, G:0.04, T:0.50
Consensus pattern (15 bp):
AATTTAATTCAATTC
Found at i:75072077 original size:10 final size:10
Alignment explanation
Indices: 75072043--75072089 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
75072033 GAATTTGATG
75072043 TCAATTTAA-
1 TCAATTTAAT
*
75072052 TCCATTTCATAT
1 TCAATTT-A-AT
75072064 TCAATTTAAT
1 TCAATTTAAT
75072074 TCAATTTAAT
1 TCAATTTAAT
75072084 TCAATT
1 TCAATT
75072090 CACATCCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 6 0.18
10 19 0.58
11 2 0.06
12 6 0.18
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (10 bp):
TCAATTTAAT
Found at i:75073427 original size:17 final size:16
Alignment explanation
Indices: 75073376--75073429 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 16
75073366 ATATTGAGTC
75073376 AAAAATATATAATATAA
1 AAAAATA-ATAATATAA
* *
75073393 ACAAATAAT-AT-TAC
1 AAAAATAATAATATAA
75073407 AAAAATAATAATATAA
1 AAAAATAATAATATAA
*
75073423 GAAAATA
1 AAAAATA
75073430 TGTACATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
14 10 0.33
15 4 0.13
16 10 0.33
17 6 0.20
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.26
Consensus pattern (16 bp):
AAAAATAATAATATAA
Found at i:75073488 original size:21 final size:21
Alignment explanation
Indices: 75073462--75073513 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
75073452 TGCGAAAATA
*
75073462 TATAAAATTTATATACCAAAG
1 TATAAAATTTATATACAAAAG
75073483 TATAAAATTTATATACAAAAG
1 TATAAAATTTATATACAAAAG
75073504 TATAAAATTT
1 TATAAAATTT
75073514 GACCAACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (21 bp):
TATAAAATTTATATACAAAAG
Found at i:75079513 original size:50 final size:50
Alignment explanation
Indices: 75079394--75079675 Score: 280
Period size: 50 Copynumber: 5.6 Consensus size: 50
75079384 GTTGTGAGAA
* * *** *
75079394 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG--TTAGGT
*
75079446 CACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * ** * ** *
75079496 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATATTTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTT-AGGT
* * * *
75079547 CACGTGTGTAGTACTAAGTGTAGGCTATTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
** * * ** *
75079597 CACGCGTGTAGTACTAGGTGCAGTCTACTACGTGTACTGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
75079646 CACATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
75079676 TGCATACCAG
Statistics
Matches: 186, Mismatches: 41, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
49 30 0.16
50 82 0.44
51 36 0.19
52 38 0.20
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:75079581 original size:101 final size:101
Alignment explanation
Indices: 75079445--75079675 Score: 288
Period size: 101 Copynumber: 2.3 Consensus size: 101
75079435 TGGTTTTAGG
* *
75079445 TCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCGCATGTGTAGTAC
1 TCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACACGTGTAGTAC
75079510 TAAGTGCAGGCTACTATGCATACCTGATATTTTCAA
66 TAAGTGCAGGCTACTATGCATACCTGATATTTTCAA
* * * * *
75079546 TCACGTGTGTAGTACTAAGTGTAGGCTATTACGTGTATCAGATGGTTAGGTCACGCGTGTAGTAC
1 TCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACACGTGTAGTAC
* * * ** * **
75079611 TAGGTGCAGTCTACTACGTGTA-CTGGAT-TGTT-GG
66 TAAGTGCAGGCTACTATGCATACCT-GATATTTTCAA
*
75079645 TCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACCTGTGTAGTACTAAGTGCAGGCTACTA
75079676 TGCATACCAG
Statistics
Matches: 111, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
99 28 0.25
100 5 0.05
101 78 0.70
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACACGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCTGATATTTTCAA
Found at i:75079689 original size:150 final size:152
Alignment explanation
Indices: 75079398--75079689 Score: 419
Period size: 150 Copynumber: 1.9 Consensus size: 152
75079388 TGAGAACACA
* * *
75079398 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCACCTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAAATGG-TTTAGGTCACCTGTGTAGTACTAA
*
75079463 GTGCAGGCTACTACGTGTACCAGATGGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
65 GTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
*
75079528 CATACCTGATATTTTCAATCACG
130 CATACCAGATATTTTCAATCACG
* * * * *
75079551 TGTGTAGTACTAAGTGTAGGCTATTACGTGTATCAGATGG-TTAGGTCACGC-GTGTAGTACTAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAAATGGTTTAGGTCAC-CTGTGTAGTACTAA
* ** *
75079614 GTGCAGTCTACTACGTGTACTGGATTGTT-GGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
65 GTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
75079678 CATACCAGATAT
130 CATACCAGATAT
75079690 CTTCGGTTAC
Statistics
Matches: 124, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
150 45 0.36
151 45 0.36
152 1 0.01
153 33 0.27
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (152 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAAATGGTTTAGGTCACCTGTGTAGTACTAAG
TGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC
ATACCAGATATTTTCAATCACG
Found at i:75083447 original size:15 final size:15
Alignment explanation
Indices: 75083427--75083486 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
75083417 TATGATATTG
75083427 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
75083442 TATCTTGGATTTCTC
1 TATCTTGGATTTCTT
*
75083457 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
* * *
75083472 AATCCTGGTTTTCTT
1 TATCTTGGATTTCTT
75083487 GTTATCTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.13, C:0.18, G:0.13, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:75087010 original size:101 final size:100
Alignment explanation
Indices: 75086843--75087024 Score: 240
Period size: 101 Copynumber: 1.8 Consensus size: 100
75086833 TGGTTTTAGG
* * * *
75086843 TCACCTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTTAGGTCGCACGCGTTGTAC
1 TCACCTGTGTAATACTAAGTGCAGACTACTACATGTACCAGATGGTCAGGTC-CACGCGTTATAC
*
75086908 TAGGTGCAGGCTACTATGCGTAGCCGATAGTTCCGA
65 TAAGTGCAGGCTACTATGCGTAGCCGATAGTTCCGA
* * * * *
75086944 TCACTTGTGTAATAGTAAGTGCAGGCTACTACATGTATCAGATGGTCAGGT-CACGTGTGTAATA
1 TCACCTGTGTAATACTAAGTGCAGACTACTACATGTACCAGATGGTCAGGTCCACGCGT-T-ATA
75087008 CTAAGTGCAGGCTACTA
64 CTAAGTGCAGGCTACTA
75087025 CATGTACCAG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
99 6 0.09
100 1 0.01
101 62 0.90
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACCTGTGTAATACTAAGTGCAGACTACTACATGTACCAGATGGTCAGGTCCACGCGTTATACT
AAGTGCAGGCTACTATGCGTAGCCGATAGTTCCGA
Found at i:75087013 original size:50 final size:50
Alignment explanation
Indices: 75086840--75087066 Score: 201
Period size: 50 Copynumber: 4.5 Consensus size: 50
75086830 AAATGGTTTT
* * * *
75086840 AGGTCACCTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTC
* * *** *
75086890 AGGTCGCACGCGT-T-GTACTAGGTGCAGGCTACTATGCGTAGCC-GATAGTTC
1 AGGT--CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAGAT-GGTC
* * * * * *
75086941 CGATCACTTGTGTAATAGTAAGTGCAGGCTACTACATGTATCAGATGGTC
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTC
* *
75086991 AGGTCACGTGTGTAATACTAAGTGCAGGCTACTACATGTACCAGATTGT-
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTC
* * *
75087040 TGGTCGCATGTGTAGTACTAAGTGCAG
1 AGGTCACGTGTGTAGTACTAAGTGCAG
75087067 CTATGCGTAC
Statistics
Matches: 140, Mismatches: 30, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
49 28 0.20
50 77 0.55
51 30 0.21
52 5 0.04
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTC
Found at i:75087301 original size:16 final size:15
Alignment explanation
Indices: 75087280--75087309 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75087270 GAATGGAGTA
75087280 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
75087296 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
75087310 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:75090834 original size:20 final size:18
Alignment explanation
Indices: 75090800--75090836 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
75090790 TTTTATGTTG
75090800 ATATGTTTAATTTAATTA
1 ATATGTTTAATTTAATTA
75090818 ATATGATTTAGATTTAATT
1 ATATG-TTTA-ATTTAATT
75090837 CATGTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
ATATGTTTAATTTAATTA
Found at i:75104612 original size:32 final size:32
Alignment explanation
Indices: 75104574--75104637 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
75104564 CATTGTCGAG
75104574 TTTGTCTCTACTCAACAAATGACCCTTCACAT
1 TTTGTCTCTACTCAACAAATGACCCTTCACAT
75104606 TTTGTCTCTACTCAACAAATGACCCTTCACAT
1 TTTGTCTCTACTCAACAAATGACCCTTCACAT
75104638 CTTAGAACGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.31, G:0.06, T:0.34
Consensus pattern (32 bp):
TTTGTCTCTACTCAACAAATGACCCTTCACAT
Found at i:75112457 original size:51 final size:51
Alignment explanation
Indices: 75112372--75112469 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
75112362 CCTTATAACT
* *
75112372 TGTAACACATCTATAATGAACTCGAACCTCTCAACGAGCTTGGATGCTACA
1 TGTAACACATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATGCTACA
* *
75112423 TGTATCACATCCATTATGAACTCGAACCAT-TCAACGAGCTCGGATGC
1 TGTAACACATCCATAATGAACTCGAACC-TCTCAACGAGCTCGGATGC
75112470 CTCATATATC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (51 bp):
TGTAACACATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATGCTACA
Found at i:75112480 original size:51 final size:51
Alignment explanation
Indices: 75112377--75112480 Score: 140
Period size: 51 Copynumber: 2.0 Consensus size: 51
75112367 TAACTTGTAA
* * *
75112377 CACATCTATAATGAACTCGAACCTCTCAACGAGCTTGGATGCTACATGTAT
1 CACATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATGCTACATATAT
*
75112428 CACATCCATTATGAACTCGAACCAT-TCAACGAGCTCGGATGCCT-CATATAT
1 CACATCCATAATGAACTCGAACC-TCTCAACGAGCTCGGATG-CTACATATAT
75112479 CA
1 CA
75112481 TGAACTTGGA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
51 44 0.94
52 3 0.06
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (51 bp):
CACATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATGCTACATATAT
Found at i:75117960 original size:43 final size:43
Alignment explanation
Indices: 75117912--75118060 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 43
75117902 GTTATTGAGA
* * *
75117912 TGTGATTACATGTAAGAGCATGTCTGGGACATTGGCATTGTAG
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAG
* * *
75117955 TGTGATTATGCGTAAGACCATGTCTGGGACATTGGCATCGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAG
* * * * *
75117998 TATGATT-CGTGTAAGACCCTGTCTGGGATAGTAGCATCGATA-
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAG
* * *
75118040 TGTCATAACATGTAAGACCAT
1 TGTGATTACGTGTAAGACCAT
75118061 ATCTAGGATA
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
42 30 0.35
43 56 0.65
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAG
Found at i:75123686 original size:27 final size:27
Alignment explanation
Indices: 75123656--75123721 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
75123646 GCATCTTATA
*
75123656 TTGATTCT-ATATTGGGCTTAGGCCCAC
1 TTGATTCTGATAATGGGC-TAGGCCCAC
* *
75123683 TTGATTCTGTTAATGGGCTAGGCCCAA
1 TTGATTCTGATAATGGGCTAGGCCCAC
75123710 TTG-TTACTGATA
1 TTGATT-CTGATA
75123722 TTGAGAATGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.06
27 24 0.73
28 7 0.21
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (27 bp):
TTGATTCTGATAATGGGCTAGGCCCAC
Found at i:75125201 original size:61 final size:61
Alignment explanation
Indices: 75125098--75125252 Score: 222
Period size: 61 Copynumber: 2.5 Consensus size: 61
75125088 CCTATCAGAC
*
75125098 ATTTCAAAGTAATGTTCAAAACACACTTACTGCAAAAGAAATCCCTGTAATTTTTAAAACT
1 ATTTCAAAGTAATGTTCAAAACACACTTATTGCAAAAGAAATCCCTGTAATTTTTAAAACT
* * * * *
75125159 ATTTCGAAGTAATGTTCACAACCCACTTATTGCAGAAA-AAATCCTTGTAATTTTTAGAACT
1 ATTTCAAAGTAATGTTCAAAACACACTTATTGCA-AAAGAAATCCCTGTAATTTTTAAAACT
* *
75125220 ATTTTAAAGTAATGATCAAAACACACTTATTGC
1 ATTTCAAAGTAATGTTCAAAACACACTTATTGC
75125253 TCTAAGCCTA
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 79 0.96
62 3 0.04
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (61 bp):
ATTTCAAAGTAATGTTCAAAACACACTTATTGCAAAAGAAATCCCTGTAATTTTTAAAACT
Found at i:75130585 original size:29 final size:28
Alignment explanation
Indices: 75130543--75130599 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
75130533 GCGAGTTATA
75130543 CTGATTTGGATTCGGGCCATGAATATCAG
1 CTGATTTGGATTCGGGCCATG-ATATCAG
*
75130572 CTGATTTGGCTTCGGGCCATGATATCAG
1 CTGATTTGGATTCGGGCCATGATATCAG
75130600 TAGTTCAGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (28 bp):
CTGATTTGGATTCGGGCCATGATATCAG
Found at i:75138287 original size:18 final size:17
Alignment explanation
Indices: 75138255--75138296 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
75138245 GGTTTTAGAA
75138255 AATTTATTTTATTTTATT
1 AATTT-TTTTATTTTATT
*
75138273 TATTTTTTTATTTTTATT
1 AATTTTTTTA-TTTTATT
75138291 AATTTT
1 AATTTT
75138297 GATTATTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
AATTTTTTTATTTTATT
Found at i:75142889 original size:12 final size:12
Alignment explanation
Indices: 75142872--75142897 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75142862 GCTATAAAGC
75142872 TTACTTTGTTTA
1 TTACTTTGTTTA
75142884 TTACTTTGTTTA
1 TTACTTTGTTTA
75142896 TT
1 TT
75142898 TCCATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (12 bp):
TTACTTTGTTTA
Found at i:75157424 original size:21 final size:21
Alignment explanation
Indices: 75157389--75157429 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75157379 TGAGTATTTT
75157389 GATGTTTAAATGATAGATTATG
1 GATGTTTAAATGATAG-TTATG
*
75157411 GATGTTT-GATGATAGTTAT
1 GATGTTTAAATGATAGTTAT
75157430 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 7 0.39
22 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (21 bp):
GATGTTTAAATGATAGTTATG
Found at i:75163171 original size:40 final size:39
Alignment explanation
Indices: 75163127--75163278 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 39
75163117 CGAGATTTAG
75163127 CCGGATATAACAACTCACACAAATGCCTTCGGGTCTCAGC
1 CCGGATATAACAACTCACACAAATGCCTTCGGGTCT-AGC
* *
75163167 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCACACAAATGCCTTCGGGTC-TAGC
* * *
75163207 CCGGATATAATC-ACT-AGCATAAATGCCTTTGGGACATAGC
1 CCGGATATAA-CAACTCA-CACAAATGCCTTCGGGTC-TAGC
* * *
75163247 CCGGATATAGCAACTCGCACGAATGCCTTCGG
1 CCGGATATAACAACTCACACAAATGCCTTCGG
75163279 ATCTTAGTCC
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 91 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAACAACTCACACAAATGCCTTCGGGTCTAGC
Found at i:75163248 original size:80 final size:79
Alignment explanation
Indices: 75163114--75163290 Score: 227
Period size: 80 Copynumber: 2.2 Consensus size: 79
75163104 ACCCAAGTAT
*
75163114 CTTCGAGAT-TTAGCCGGATATAACAACTCACACAAATGCCTTCGGGTCTCAGCCCGGATATAGC
1 CTTCG-GATCTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGACTCAGCCCGGATATAGC
75163178 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * *
75163193 CTTCGGGTCTTAGCCCGGATATAATC-ACT-AGCATAAATGCCTTTGGGACAT-AGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATATAA-CAACTCA-CACAAATGCCTTCGGGAC-TCAGCCCGGATAT
*
75163255 AGCAACTCGCACGAATGC
62 AGCAACTCGCACAAATGC
75163273 CTTCGGATCTTAGTCCGG
1 CTTCGGATCTTAG-CCGG
75163291 TTATCATCCG
Statistics
Matches: 86, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 10 0.12
80 72 0.84
81 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGACTCAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:75170437 original size:40 final size:39
Alignment explanation
Indices: 75170378--75170542 Score: 199
Period size: 40 Copynumber: 4.2 Consensus size: 39
75170368 ACCCAAGTAT
*
75170378 CTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTAGCCCGGATATAACAACTCGCACAAATGC
*
75170417 CTTCGGGTCTCAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCT-AGCCCGGATATAACAACTCGCACAAATGC
* * *
75170457 CTTTGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTC-TAGCCCGGATATAA-CAACTCGCACAAATGC
* * *
75170497 CTTCGGGATATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGG-TCTAGCCCGGATATAACAACTCGCACAAATGC
75170537 CTTCGG
1 CTTCGG
75170543 ATCTTAGTCC
Statistics
Matches: 108, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 10 0.09
40 93 0.86
41 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
CTTCGGGTCTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:75170524 original size:80 final size:79
Alignment explanation
Indices: 75170378--75170554 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 79
75170368 ACCCAAGTAT
* *
75170378 CTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTCAGCCCGGATATAGC
1 CTTC-GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGTATCAGCCCGGATATAGC
75170442 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * *
75170457 CTTTGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGATAT-AGCCCGGATATA
1 CTTCGGATCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGG-TATCAGCCCGGATATA
*
75170520 GCAACTCGCACGAATGC
63 GCAACTCGCACAAATGC
75170537 CTTCGGATCTTAGTCCGG
1 CTTCGGATCTTAG-CCGG
75170555 TTATCATCCG
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.04
79 7 0.08
80 72 0.85
81 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGTATCAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:75180384 original size:23 final size:24
Alignment explanation
Indices: 75180341--75180385 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
75180331 ATGTTCAAAT
75180341 TCATCAAGTGAATAAATCAACATG
1 TCATCAAGTGAATAAATCAACATG
75180365 TCATCAA-TGAATACAA-CAACA
1 TCATCAAGTGAATA-AATCAACA
75180386 AATTGATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.49, C:0.20, G:0.09, T:0.22
Consensus pattern (24 bp):
TCATCAAGTGAATAAATCAACATG
Found at i:75198187 original size:46 final size:45
Alignment explanation
Indices: 75198039--75198251 Score: 180
Period size: 46 Copynumber: 4.6 Consensus size: 45
75198029 CACTTCTGTG
* * * *
75198039 AGCCAGTGTAAGACAAGTCTGGGACATGCATCGGCCAC-ATTATGA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * * ** *
75198084 GAGTCGGTGTAAGACCATGTCTAGGACATGTCATCGGTGTTGAGACGA
1 -AGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGACGA
**
75198132 ATGATAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 A-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
* * * * *
75198179 AGCCAGTGTAAGACATGTCTGGAACATGCATCAG-CTATGAGATGT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGA
75198224 A-CCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGA-CATGTCTGGGACATG
75198252 GCATAGGCAC
Statistics
Matches: 135, Mismatches: 25, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
44 11 0.08
45 17 0.13
46 58 0.43
47 30 0.22
48 18 0.13
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:75200512 original size:37 final size:37
Alignment explanation
Indices: 75200451--75200566 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
75200441 TTATTACGAA
* * * * *
75200451 GTCTTACCCGAACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
75200488 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
*
75200525 GTCTTACCCGGACAAAATCCCCACATGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
75200562 GTCTT
1 GTCTT
75200567 TAGAGCTCGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:75200721 original size:47 final size:47
Alignment explanation
Indices: 75200667--75200962 Score: 341
Period size: 47 Copynumber: 6.4 Consensus size: 47
75200657 CTCGGCCCTG
75200667 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
75200714 TCACATATATATACACTTTCACATTCATCACATCGGCCATTCA-TCAC--A
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGGC-CTTA
* ** * *
75200762 TCGGCCAT-TAGGC-CTTATCACATAT-AT-ACA-----CTTTCA--CATTCA
1 TC--ACATATATACACTT-TCACAT-TCATCACATCGGCCATT-AGGCCTT-A
75200804 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
75200851 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
75200898 TCACATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
75200945 TCACATATATACACTTTC
1 TCACATATATACACTTTC
75200963 TTGGCTGAAT
Statistics
Matches: 214, Mismatches: 13, Indels: 44
0.79 0.05 0.16
Matches are distributed among these distances:
40 5 0.02
41 16 0.07
42 9 0.04
46 7 0.03
47 129 0.60
48 9 0.04
49 36 0.17
50 3 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:75200756 original size:16 final size:16
Alignment explanation
Indices: 75200735--75200770 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
75200725 TACACTTTCA
75200735 CATTCATCACATCGGC
1 CATTCATCACATCGGC
75200751 CATTCATCACATCGGC
1 CATTCATCACATCGGC
75200767 CATT
1 CATT
75200771 AGGCCTTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.36, G:0.11, T:0.28
Consensus pattern (16 bp):
CATTCATCACATCGGC
Found at i:75200771 original size:65 final size:63
Alignment explanation
Indices: 75200686--75200889 Score: 291
Period size: 72 Copynumber: 3.1 Consensus size: 63
75200676 TACACTTTCA
75200686 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
1 CATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGC
75200751 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATATATAC
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC----AT--
**
75200816 ACTTTC
60 -C-GGC
75200822 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 -CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
75200886 CATT
1 CATT
75200890 AGGCCTTATC
Statistics
Matches: 126, Mismatches: 4, Indels: 20
0.84 0.03 0.13
Matches are distributed among these distances:
63 29 0.23
64 1 0.01
65 33 0.26
67 2 0.02
68 2 0.02
70 1 0.01
71 1 0.01
72 57 0.45
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (63 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:75200812 original size:25 final size:25
Alignment explanation
Indices: 75200778--75200834 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
75200768 ATTAGGCCTT
75200778 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
75200803 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
75200828 ATCACAT
1 ATCACAT
75200835 CGGCCATTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.37, C:0.28, G:0.00, T:0.35
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:75203790 original size:40 final size:40
Alignment explanation
Indices: 75203745--75203979 Score: 219
Period size: 40 Copynumber: 5.9 Consensus size: 40
75203735 CGAATACACG
* *
75203745 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
75203785 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
75203825 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
75203865 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** * *
75203905 GTAACTC-GCACAAATGC-CTTCGGGACTTAACCCGGATTTA
1 -TCAC-CAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* **
75203945 GTAACTC-GCACCAATGC-CTTCGGG-CTTAGCCCGGA
1 -TCAC-CAGCATGAATGCTCTTCGGGACTTAGCCCGGA
75203980 ATTAGTAACT
Statistics
Matches: 166, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
39 10 0.06
40 145 0.87
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:75203966 original size:120 final size:119
Alignment explanation
Indices: 75203745--75203979 Score: 262
Period size: 120 Copynumber: 2.0 Consensus size: 119
75203735 CGAATACACG
* * *
75203745 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGA
* * * **
75203810 TTTAGCACGGATATATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
66 CTTAACACGGATATATAACTAGCACCAATGCTCTTCGG-ACTTAGCCCGGATACA
* * *
75203865 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATAGTAAC-TC-GCACAAATGC-CTTCG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGG--ATA-TAACACCAGCACAAATGCTCTTCG
* * * *
75203927 GGACTTAACCCGGATTTAGTAACTCGCACCAATGC-CTTCGGGCTTAGCCCGGA
63 GGACTTAACACGGATATA-TAACTAGCACCAATGCTCTTCGGACTTAGCCCGGA
75203980 ATTAGTAACT
Statistics
Matches: 96, Mismatches: 15, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
119 11 0.11
120 56 0.58
121 21 0.22
122 4 0.04
123 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (119 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGA
CTTAACACGGATATATAACTAGCACCAATGCTCTTCGGACTTAGCCCGGATACA
Found at i:75204043 original size:79 final size:81
Alignment explanation
Indices: 75203882--75204059 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 81
75203872 CATGAATGCT
* * *
75203882 CTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
1 CTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAG
* *
75203946 TAACTCGCACCAATGC
66 TAACTAGCACCAAAGC
** *
75203962 CTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGAATATG
1 CTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGAATATA
*
75204024 GTCACTTAGCA-CAAAGC
65 GTAAC-TAGCACCAAAGC
75204041 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
75204060 CATCATTCGA
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.04
79 59 0.69
80 23 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAG
TAACTAGCACCAAAGC
Found at i:75205989 original size:79 final size:81
Alignment explanation
Indices: 75205880--75206062 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
75205870 TACTCGTTCA
* *
75205880 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
75205943 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
75205960 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
75206023 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
75206039 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
75206063 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:75206062 original size:40 final size:40
Alignment explanation
Indices: 75205859--75206062 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
75205849 CGGAATTTAA
** *
75205859 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75205899 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75205939 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75205978 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
75206018 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75206058 CCGGA
1 CCGGA
75206063 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75218566 original size:17 final size:17
Alignment explanation
Indices: 75218541--75218600 Score: 84
Period size: 17 Copynumber: 3.5 Consensus size: 17
75218531 GTCGGGCAGA
*
75218541 CCGTATGTCACACACGC
1 CCGTGTGTCACACACGC
75218558 CCGTGTGTCACACACGC
1 CCGTGTGTCACACACGC
* *
75218575 TCGTGTGTCACACAAGC
1 CCGTGTGTCACACACGC
*
75218592 ACGTGTGTC
1 CCGTGTGTC
75218601 TGCCCGTGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.20, C:0.35, G:0.23, T:0.22
Consensus pattern (17 bp):
CCGTGTGTCACACACGC
Found at i:75219479 original size:48 final size:48
Alignment explanation
Indices: 75219376--75219503 Score: 157
Period size: 48 Copynumber: 2.7 Consensus size: 48
75219366 AGGGGTAGAG
* * * **
75219376 TGTCGATGCCATGTCCCAAACATAGTGTTACACTAGCTCTCGTCTCAA
1 TGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAA
** ** *
75219424 TACCGATGCCATGTCCCTGACATGGTCTTACACTAGCTCTCATAACAT
1 TGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAA
*
75219472 TGTCGATGCCATGTTCCAAACATGGTCTTACA
1 TGTCGATGCCATGTCCCAAACATGGTCTTACA
75219504 TTGGCACACC
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (48 bp):
TGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAA
Found at i:75222287 original size:25 final size:26
Alignment explanation
Indices: 75222226--75222299 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
75222216 CAAGGTAACA
*
75222226 TGCCACAAAGGCTTTCAGAGAGAGTT
1 TGCCACAAAGGCTTTCAAAGAGAGTT
*
75222252 AGCCACAAAGGCTTTCTAAAG-GA-TT
1 TGCCACAAAGGCTTTC-AAAGAGAGTT
75222277 TGCCACAAAGGCTTTTCAAAGAG
1 TGCCACAAAGGC-TTTCAAAGAG
75222300 TTTTGTGTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 17 0.40
26 22 0.52
27 3 0.07
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
TGCCACAAAGGCTTTCAAAGAGAGTT
Found at i:75222304 original size:26 final size:24
Alignment explanation
Indices: 75222226--75222302 Score: 93
Period size: 25 Copynumber: 3.0 Consensus size: 24
75222216 CAAGGTAACA
75222226 TGCCACAAAGGCTTTCAGAGAGAGTT
1 TGCCACAAAGGCTTTCA-A-AGAGTT
*
75222252 AGCCACAAAGGCTTTCTAAAG-GATT
1 TGCCACAAAGGCTTTC-AAAGAG-TT
75222277 TGCCACAAAGGCTTTTCAAAGAGTT
1 TGCCACAAAGGC-TTTCAAAGAGTT
75222302 T
1 T
75222303 TGTGTTTACC
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
24 1 0.02
25 22 0.49
26 21 0.47
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (24 bp):
TGCCACAAAGGCTTTCAAAGAGTT
Found at i:75233298 original size:9 final size:10
Alignment explanation
Indices: 75233284--75233330 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
75233274 GAAAATTTGT
75233284 AATTTTTTA-
1 AATTTTTTAG
*
75233293 AATTTTTTAT
1 AATTTTTTAG
75233303 ATATTTTTTAG
1 A-ATTTTTTAG
*
75233314 -ATTTTTTTG
1 AATTTTTTAG
75233323 AATTTTTT
1 AATTTTTT
75233331 TATTTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 17 0.52
10 8 0.24
11 8 0.24
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (10 bp):
AATTTTTTAG
Found at i:75233483 original size:9 final size:9
Alignment explanation
Indices: 75233469--75233511 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
75233459 ATATCAATTT
75233469 ATTATTCGA
1 ATTATTCGA
75233478 ATTATTCGA
1 ATTATTCGA
* *
75233487 ACTATTTGA
1 ATTATTCGA
*
75233496 ATTATTTGA
1 ATTATTCGA
*
75233505 GTTATTC
1 ATTATTC
75233512 AAATCGTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.49
Consensus pattern (9 bp):
ATTATTCGA
Found at i:75240546 original size:23 final size:24
Alignment explanation
Indices: 75240515--75240603 Score: 78
Period size: 23 Copynumber: 3.8 Consensus size: 24
75240505 TATAATATTC
**
75240515 ACGAACATGTTCATTTAAC-TTAA
1 ACGAACATGTTCATCGAACATTAA
* *
75240538 TCGAACATGTTTA-CGAACATTAA
1 ACGAACATGTTCATCGAACATTAA
75240561 ACGAACATGTTCAT-GAACATATAA
1 ACGAACATGTTCATCGAACAT-TAA
** *
75240585 TTGAATATGTTCA-CGAACA
1 ACGAACATGTTCATCGAACA
75240604 ATGTTAATAA
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
22 3 0.06
23 32 0.60
24 18 0.34
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.30
Consensus pattern (24 bp):
ACGAACATGTTCATCGAACATTAA
Found at i:75241216 original size:13 final size:13
Alignment explanation
Indices: 75241198--75241224 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75241188 GAGTCAGACA
75241198 TAGATTTAGGTCC
1 TAGATTTAGGTCC
75241211 TAGATTTAGGTCC
1 TAGATTTAGGTCC
75241224 T
1 T
75241225 TTGTATTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (13 bp):
TAGATTTAGGTCC
Found at i:75249262 original size:13 final size:13
Alignment explanation
Indices: 75249244--75249269 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75249234 GGGCTCACTT
75249244 ACACTGATTTGAA
1 ACACTGATTTGAA
75249257 ACACTGATTTGAA
1 ACACTGATTTGAA
75249270 GCAAATCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ACACTGATTTGAA
Found at i:75250630 original size:26 final size:26
Alignment explanation
Indices: 75250593--75250676 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
75250583 TGATACAAAT
* *
75250593 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
75250619 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
75250645 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
75250671 TGATAA
1 TGATAA
75250677 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:75259430 original size:13 final size:13
Alignment explanation
Indices: 75259412--75259439 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75259402 TGATCTCTTC
75259412 TGGGTATTCTATA
1 TGGGTATTCTATA
75259425 TGGGTATTCTATA
1 TGGGTATTCTATA
75259438 TG
1 TG
75259440 CTCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:75272520 original size:50 final size:50
Alignment explanation
Indices: 75272222--75272630 Score: 231
Period size: 46 Copynumber: 8.6 Consensus size: 50
75272212 ATTTGTGTGC
* * * * *
75272222 CAGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-CACAT-TATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGT
* * * * *
75272268 CAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGA--CGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGT
* * * * * * *
75272315 CTAGTGTAA-AACATGTTTGGGATAT-GCATCGGCCTCGAGATGT-A-AGC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGT
* * * *
75272362 CAGTGTAAGA-CATGTTTGAGACAT-GCATTGGC-TACGAGATGT----GT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATA-GATATGTGAGAGT
* * * * * * *
75272406 CAGTATACGACCATGTCTTGGACATGGCATCGGCACATATA-GAG-GTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGT
*
75272454 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATAGATATGTGAGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGT
* * * * * * *
75272504 TAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGAT-TTTAATAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGT
* * * *
75272553 CAGTGTAAGACTATAG-CTGGGACATGGCATCGAC-TTG--ATG-GATGAGC
1 CAGTGTAAGACCAT-GTCTGGGACATGGCATCGGCATAGATATGTGA-GAGT
*
75272600 CAGTGTAAGACCATGTCTGAGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
75272631 CGTATTATAC
Statistics
Matches: 284, Mismatches: 57, Indels: 43
0.74 0.15 0.11
Matches are distributed among these distances:
44 9 0.03
45 13 0.05
46 68 0.24
47 59 0.21
48 59 0.21
49 37 0.13
50 39 0.14
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGT
Found at i:75274276 original size:20 final size:20
Alignment explanation
Indices: 75274251--75274317 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
75274241 AGAATCTTTA
75274251 TGGGGAGAGTCCAGGTCCGT
1 TGGGGAGAGTCCAGGTCCGT
* * * **
75274271 TGGGGA-ATTTCAGAATCTTT
1 TGGGGAGAGTCCAG-GTCCGT
75274291 ATGGGGAGAGTCCAGGTCCGT
1 -TGGGGAGAGTCCAGGTCCGT
75274312 TGGGGA
1 TGGGGA
75274318 TTTACCTCCA
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
19 5 0.15
20 15 0.44
21 9 0.26
22 5 0.15
ACGTcount: A:0.19, C:0.15, G:0.40, T:0.25
Consensus pattern (20 bp):
TGGGGAGAGTCCAGGTCCGT
Found at i:75274292 original size:41 final size:41
Alignment explanation
Indices: 75274236--75274317 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
75274226 TGGTCAATTT
75274236 ATTTCAGAATCTTTATGGGGAGAGTCCAGGTCCGTTGGGGA
1 ATTTCAGAATCTTTATGGGGAGAGTCCAGGTCCGTTGGGGA
75274277 ATTTCAGAATCTTTATGGGGAGAGTCCAGGTCCGTTGGGGA
1 ATTTCAGAATCTTTATGGGGAGAGTCCAGGTCCGTTGGGGA
75274318 TTTACCTCCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.15, G:0.34, T:0.29
Consensus pattern (41 bp):
ATTTCAGAATCTTTATGGGGAGAGTCCAGGTCCGTTGGGGA
Found at i:75274297 original size:21 final size:22
Alignment explanation
Indices: 75274236--75274299 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 22
75274226 TGGTCAATTT
75274236 ATTTCAGAATCTTTATGGGGAG
1 ATTTCAGAATCTTTATGGGGAG
* * * **
75274258 AGTCCAG-GTCCGT-TGGGGA-
1 ATTTCAGAATCTTTATGGGGAG
75274277 ATTTCAGAATCTTTATGGGGAG
1 ATTTCAGAATCTTTATGGGGAG
75274299 A
1 A
75274300 GTCCAGGTCC
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
19 5 0.17
20 9 0.31
21 9 0.31
22 6 0.21
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (22 bp):
ATTTCAGAATCTTTATGGGGAG
Found at i:75277028 original size:47 final size:47
Alignment explanation
Indices: 75276917--75277053 Score: 141
Period size: 47 Copynumber: 2.9 Consensus size: 47
75276907 ATAAAGGACG
* * * **
75276917 GGATTTTGGGGTTTTCGAGCAACAAAAAGACTGAGAAAGAAAAGGGATG
1 GGATTTTGAGG-TTTCAAGCAA-AAAAAGACCGAGAAAGAAAAGGGAAA
* *
75276966 GGA-TTTGTGGTTTCAAGCAAAAAAAGTCCGAGAAAGAAAAGGGAAA
1 GGATTTTGAGGTTTCAAGCAAAAAAAGACCGAGAAAGAAAAGGGAAA
* * * *
75277012 TGATTTTGAGGTTTCAAGCAAAGAAAATATCAAGAAAGAAAA
1 GGATTTTGAGGTTTCAAGCAAA-AAAAGACCGAGAAAGAAAA
75277054 TAATTCGTAT
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
46 24 0.32
47 26 0.35
48 21 0.28
49 3 0.04
ACGTcount: A:0.45, C:0.08, G:0.27, T:0.20
Consensus pattern (47 bp):
GGATTTTGAGGTTTCAAGCAAAAAAAGACCGAGAAAGAAAAGGGAAA
Found at i:75277051 original size:15 final size:16
Alignment explanation
Indices: 75277025--75277055 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
75277015 TTTTGAGGTT
75277025 TCAAGCAAAGAAAATA
1 TCAAGCAAAGAAAATA
75277041 TCAAG-AAAGAAAATA
1 TCAAGCAAAGAAAATA
75277056 ATTCGTATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.65, C:0.10, G:0.13, T:0.13
Consensus pattern (16 bp):
TCAAGCAAAGAAAATA
Found at i:75277177 original size:40 final size:40
Alignment explanation
Indices: 75277122--75277260 Score: 197
Period size: 40 Copynumber: 3.5 Consensus size: 40
75277112 AAAGTAAAAA
75277122 ACCTTTTGCAGCGTTTTTAACACAAATGTCGCTATTGCTT
1 ACCTTTTGCAGCGTTTTTAACACAAATGTCGCTATTGCTT
* *
75277162 ACCTTTTGCAGCGTTTTTACCATAAATGTCGCTATTGCTT
1 ACCTTTTGCAGCGTTTTTAACACAAATGTCGCTATTGCTT
* * ***
75277202 ACCTTTTGCGGCGTTTTTATCACAAACACCGCTATTGCTT
1 ACCTTTTGCAGCGTTTTTAACACAAATGTCGCTATTGCTT
**
75277242 ACCTTTTGTTGCGTTTTTA
1 ACCTTTTGCAGCGTTTTTA
75277261 TCAAAAACAC
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.42
Consensus pattern (40 bp):
ACCTTTTGCAGCGTTTTTAACACAAATGTCGCTATTGCTT
Found at i:75277261 original size:40 final size:40
Alignment explanation
Indices: 75277122--75277299 Score: 194
Period size: 40 Copynumber: 4.4 Consensus size: 40
75277112 AAAGTAAAAA
* ***
75277122 ACCTTTTGCAGCGTTTTTAACACAAATGTCGCTATTGCTT
1 ACCTTTTGCAGCGTTTTTATCACAAACACCGCTATTGCTT
* * ***
75277162 ACCTTTTGCAGCGTTTTTACCATAAATGTCGCTATTGCTT
1 ACCTTTTGCAGCGTTTTTATCACAAACACCGCTATTGCTT
*
75277202 ACCTTTTGCGGCGTTTTTATCACAAACACCGCTATTGCTT
1 ACCTTTTGCAGCGTTTTTATCACAAACACCGCTATTGCTT
** * * *
75277242 ACCTTTTGTTGCGTTTTTATCAAAAACACCGGTACTGCTTT
1 ACCTTTTGCAGCGTTTTTATCACAAACACCGCTATTGC-TT
* *
75277283 ACCTATTGCAGCATTTT
1 ACCTTTTGCAGCGTTTT
75277300 CCATCCAAAC
Statistics
Matches: 120, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 105 0.88
41 15 0.12
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (40 bp):
ACCTTTTGCAGCGTTTTTATCACAAACACCGCTATTGCTT
Found at i:75280046 original size:22 final size:22
Alignment explanation
Indices: 75280005--75280046 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
75279995 AAGATAAAAC
*
75280005 AATTAAAATAAATAACTAAGAT
1 AATTAAAAAAAATAACTAAGAT
75280027 AATTAAAACAAAATAA-TAAG
1 AATTAAAA-AAAATAACTAAG
75280047 TCTACGGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (22 bp):
AATTAAAAAAAATAACTAAGAT
Found at i:75280306 original size:27 final size:24
Alignment explanation
Indices: 75280249--75280306 Score: 62
Period size: 28 Copynumber: 2.2 Consensus size: 24
75280239 TAAAACTCTT
*
75280249 TTAAAAGAAACTCAAGAGAAATTC
1 TTAAAAGAAACTCAAGAGAAATTA
*
75280273 TTGAAAAGAAAAACTCAAAGAGAATTTA
1 TT-AAAAG--AAACTC-AAGAGAAATTA
75280301 TTAAAA
1 TTAAAA
75280307 ATAAAAGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 5 0.18
27 10 0.36
28 11 0.39
ACGTcount: A:0.57, C:0.09, G:0.12, T:0.22
Consensus pattern (24 bp):
TTAAAAGAAACTCAAGAGAAATTA
Found at i:75280312 original size:27 final size:27
Alignment explanation
Indices: 75280256--75280312 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
75280246 CTTTTAAAAG
*
75280256 AAACTCAAGAGAAATTCTTGAAAAGAA
1 AAACTCAAGAGAAATTATTGAAAAGAA
* * *
75280283 AAACTCAAAGAGAATTTATTAAAAATAA
1 AAACTC-AAGAGAAATTATTGAAAAGAA
75280311 AA
1 AA
75280313 GAGAAGTTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.21
Consensus pattern (27 bp):
AAACTCAAGAGAAATTATTGAAAAGAA
Found at i:75289749 original size:178 final size:178
Alignment explanation
Indices: 75289450--75289824 Score: 642
Period size: 178 Copynumber: 2.1 Consensus size: 178
75289440 ATTTCGGTCT
*
75289450 AGTAATTTTTTTAAATTGATAGTTAATTAAAATATAAGGATTAAATCATAAAAATGGTAAAAGTT
1 AGTAATTTTATTAAATTGATAGTTAATTAAAATATAAGGATTAAATCATAAAAATGGTAAAAGTT
* *
75289515 TAATCGCTTTAGATTTTTAATTAGCTAATAGAACAAAAGAGCAATTGTTAATAGTGGATAGTGGA
66 TAATCGCTATAGATTTTTAATTAGCTAATAGAACAAAAGAGAAATTGTTAATAGTGGATAGTGGA
75289580 ATTTCATGATGGAATCCACTTTGTTTGATTAGTAGATAAATAAGATTA
131 ATTTCATGATGGAATCCACTTTGTTTGATTAGTAGATAAATAAGATTA
* *
75289628 AGTAATTTTATTAAATTGATAGTTAATTAAAGTATAAGGATTAAATCGTAAAAATGGTAAAAGTT
1 AGTAATTTTATTAAATTGATAGTTAATTAAAATATAAGGATTAAATCATAAAAATGGTAAAAGTT
* *
75289693 TAATTGCTATAGATTTTTAATTAGCTAATAGAGCAAAAGAGAAATTGTTAATAGTGGATAGTGGA
66 TAATCGCTATAGATTTTTAATTAGCTAATAGAACAAAAGAGAAATTGTTAATAGTGGATAGTGGA
* *
75289758 ATTTCATGATGGAATCCACTTTTTTTTATTAGTAGATAAATAAGATTA
131 ATTTCATGATGGAATCCACTTTGTTTGATTAGTAGATAAATAAGATTA
*
75289806 AGTAAATTGTGATTAAATT
1 AGT-AATT-TTATTAAATT
75289825 AATTAAGTAA
Statistics
Matches: 185, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
178 172 0.93
179 4 0.02
180 9 0.05
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.38
Consensus pattern (178 bp):
AGTAATTTTATTAAATTGATAGTTAATTAAAATATAAGGATTAAATCATAAAAATGGTAAAAGTT
TAATCGCTATAGATTTTTAATTAGCTAATAGAACAAAAGAGAAATTGTTAATAGTGGATAGTGGA
ATTTCATGATGGAATCCACTTTGTTTGATTAGTAGATAAATAAGATTA
Found at i:75295106 original size:47 final size:47
Alignment explanation
Indices: 75294946--75295262 Score: 222
Period size: 47 Copynumber: 6.7 Consensus size: 47
75294936 TGGGATACAT
* * *
75294946 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTAT--G
* * * *
75294996 TGCTGATGCATGTCCCAGACA-CGTCTTACACTAGCTATCTC-TGTCAAG
1 TGCCGATGCATGTCCCAGACATGGTCTTACACTAGC--TCTCATCT-ATG
* * * *
75295044 -GCCGATGTATGTCCCAGACAT-GTCTTACTCTAGCACTCATCTCTG
1 TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATG
* * * * *
75295089 TGCCGATGCCATATCCCAGACATGGTTTTACATTGGCTCTCATAATATG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTATG
* * *
75295138 -GCTGATGCATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTGGATG
1 TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT--ATG
* * * *
75295185 T--CGATGCCATATCCCAGACATAGTCTTACACTGGCTCTCATAATATG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTATG
* * *
75295232 -GGCGAAGCATGTCCTAGACAT-GTCTTACACT
1 TGCCGATGCATGTCCCAGACATGGTCTTACACT
75295263 GGCGCACAAA
Statistics
Matches: 211, Mismatches: 39, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
45 5 0.02
46 37 0.18
47 86 0.41
48 53 0.25
49 19 0.09
50 11 0.05
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATG
Found at i:75295153 original size:94 final size:94
Alignment explanation
Indices: 75295046--75295262 Score: 303
Period size: 94 Copynumber: 2.3 Consensus size: 94
75295036 CTGTCAAGGC
* * *
75295046 CGATGTATGTCCCAGACATGTCTTACTCTAGCACTCATCTCTG-TGCCGATGCCATATCCCAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCT-GGATGCCGATGCCATATCCCAGAC
* * *
75295110 ATGGTTTTACATTGGCTCTCATAATAT-GG
65 ATAGTCTTACACTGGCTCTCATAATATGGG
* * *
75295139 CTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGATGTCGATGCCATATCCCAGAC
1 C-GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTGGATGCCGATGCCATATCCCAGAC
75295204 ATAGTCTTACACTGGCTCTCATAATATGGG
65 ATAGTCTTACACTGGCTCTCATAATATGGG
* *
75295234 CGAAGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
75295263 GGCGCACAAA
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
93 2 0.02
94 105 0.95
95 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTGGATGCCGATGCCATATCCCAGACA
TAGTCTTACACTGGCTCTCATAATATGGG
Found at i:75295251 original size:141 final size:141
Alignment explanation
Indices: 75294953--75295265 Score: 350
Period size: 141 Copynumber: 2.2 Consensus size: 141
75294943 CATTGCCAAT
75294953 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAGACAC
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATAT-CGTGCTGATGCATGTCCCAGACAC
* * * *
75295018 GTCTTACACTAGCTATCTCTGTCAAGGCCGATGTATGTCCCAGACATGTCTTACTCTAGCACTCA
65 GTCTTACACTAGCCATCTCTG-CAAGGCCGATGCATATCCCAGACATGTCTTACACTAGCACTCA
* * *
75295083 TCTCTGTGCCGAT
129 TATATGTGCCGAA
* * * *
75295096 GCCATATCCCAGACATGGTTTTACATTGGCTCTCATAATAT-G-GCTGATGCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATCGTGCTGATGCATGTCCCAGACAC
* * * * * *
75295159 GTCTTACACTAGCCCTCGTCTG-GATGTCGATGCCATATCCCAGACATAGTCTTACACTGGCTCT
65 GTCTTACACTAGCCATC-TCTGCAAGGCCGATG-CATATCCCAGACAT-GTCTTACACTAGCACT
*
75295223 CATAATATG-GGCGAA
127 CAT-ATATGTGCCGAA
*
75295238 G-CATGTCCTAGACAT-GTCTTACACTGGC
1 GCCATGTCCCAGACATGGTCTTACACTGGC
75295266 GCACAAATCA
Statistics
Matches: 143, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
140 18 0.13
141 59 0.41
142 26 0.18
143 36 0.25
144 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (141 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGTGCTGATGCATGTCCCAGACACG
TCTTACACTAGCCATCTCTGCAAGGCCGATGCATATCCCAGACATGTCTTACACTAGCACTCATA
TATGTGCCGAA
Found at i:75296950 original size:7 final size:7
Alignment explanation
Indices: 75296928--75296970 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
75296918 TATAGCACTT
75296928 TAATAACA
1 TAATAA-A
*
75296936 TTATAAA
1 TAATAAA
75296943 TAATAAA
1 TAATAAA
75296950 TAATAAA
1 TAATAAA
75296957 TAATAAA
1 TAATAAA
75296964 TAATAAA
1 TAATAAA
75296971 ATACTAATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
7 28 0.85
8 5 0.15
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (7 bp):
TAATAAA
Found at i:75307794 original size:21 final size:20
Alignment explanation
Indices: 75307770--75307808 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75307760 GTGTAAATGT
75307770 AGTAACATAATTGTTATTTTA
1 AGTAACATAA-TGTTATTTTA
**
75307791 AGTAATTTAATGTTATTT
1 AGTAACATAATGTTATTT
75307809 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
AGTAACATAATGTTATTTTA
Found at i:75309615 original size:21 final size:22
Alignment explanation
Indices: 75309574--75309615 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
75309564 AGGCCCTAAA
*
75309574 ACTACATTAGAAATGATTTGGG
1 ACTACATTAGAAATCATTTGGG
75309596 ACTACATTAGAAA-CATTTGG
1 ACTACATTAGAAATCATTTGG
75309616 AAAGTATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (22 bp):
ACTACATTAGAAATCATTTGGG
Found at i:75311547 original size:49 final size:49
Alignment explanation
Indices: 75311484--75311582 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
75311474 CAAAAATCAC
75311484 ATTACAAAACTTGTTTATTTATCAACAAGGTCTCATAATCTATCATTAA
1 ATTACAAAACTTGTTTATTTATCAACAAGGTCTCATAATCTATCATTAA
75311533 ATTACAAAACTTGTTTATTTATCAACAAGGTCTCATAATCTATCATTAA
1 ATTACAAAACTTGTTTATTTATCAACAAGGTCTCATAATCTATCATTAA
75311582 A
1 A
75311583 CATCAATAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.38
Consensus pattern (49 bp):
ATTACAAAACTTGTTTATTTATCAACAAGGTCTCATAATCTATCATTAA
Found at i:75313351 original size:35 final size:35
Alignment explanation
Indices: 75313261--75313411 Score: 144
Period size: 35 Copynumber: 4.3 Consensus size: 35
75313251 GCTTTCTGTT
* * * *
75313261 TTGGTGTGTTTCGGTTGGACTAGCTCTGATGAGCA
1 TTGGTGTGTTTAGGATGGATTAGCTCTTATGAGCA
* * * * * *
75313296 CTGATGTGTTTCGAAAGGATTAGCTTTTATGAGCA
1 TTGGTGTGTTTAGGATGGATTAGCTCTTATGAGCA
* *
75313331 TTGGTGTGTTTAGGAGGGATTAGC-CATTACGAGCA
1 TTGGTGTGTTTAGGATGGATTAGCTC-TTATGAGCA
* *
75313366 TTGGTGTGTTCA-GATGGATTGGCTCTTATGAGCA
1 TTGGTGTGTTTAGGATGGATTAGCTCTTATGAGCA
75313400 TCTGGTGTGTTT
1 T-TGGTGTGTTT
75313412 TGGTTAGATT
Statistics
Matches: 93, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
34 18 0.19
35 75 0.81
ACGTcount: A:0.19, C:0.12, G:0.32, T:0.38
Consensus pattern (35 bp):
TTGGTGTGTTTAGGATGGATTAGCTCTTATGAGCA
Found at i:75320714 original size:40 final size:41
Alignment explanation
Indices: 75320529--75320714 Score: 193
Period size: 40 Copynumber: 4.6 Consensus size: 41
75320519 CCAGCATGAT
* *
75320529 TGCTCTTCGGAACCTAGCCCGGATATAA-CACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
* **
75320569 TGCTCTTCGGAACTTAGTCCGGATA-CCTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
* * * * * *
75320609 TGCTCTTCGGAATTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
** *
75320650 TGC-CTTCGGGTCTTAGCCCGGATATAATCACTAGCTC-AA
1 TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
*
75320689 TTGC-CTTCGGGACTTAGCCCGGATAT
1 -TGCTCTTCGGAACTTAGCCCGGATAT
75320715 CATTCAAATG
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.02
40 106 0.88
41 13 0.11
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (41 bp):
TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
Found at i:75321043 original size:29 final size:29
Alignment explanation
Indices: 75321004--75321082 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75320994 CTTAATAATC
*
75321004 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75321034 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75321063 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75321083 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75321128 original size:43 final size:43
Alignment explanation
Indices: 75321067--75321295 Score: 458
Period size: 43 Copynumber: 5.3 Consensus size: 43
75321057 ATTTCAAGCC
75321067 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75321110 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75321153 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75321196 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75321239 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75321282 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75321296 TGAAAACCAA
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 186 1.00
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (43 bp):
CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
Found at i:75321568 original size:51 final size:51
Alignment explanation
Indices: 75321487--75321589 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
75321477 TAGTCATAAC
75321487 ACTCCTTCAAAATTGCATCACTTATACCCTTATAATTCAATCCAAATCGAA
1 ACTCCTTCAAAATTGCATCACTTATACCCTTATAATTCAATCCAAATCGAA
*
75321538 ACTCTTTCAAAATTGCATCACTTATACCCTTATAATTCAATCCAAATCGAA
1 ACTCCTTCAAAATTGCATCACTTATACCCTTATAATTCAATCCAAATCGAA
75321589 A
1 A
75321590 TTCAAATACG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (51 bp):
ACTCCTTCAAAATTGCATCACTTATACCCTTATAATTCAATCCAAATCGAA
Found at i:75323275 original size:38 final size:37
Alignment explanation
Indices: 75323202--75323280 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
75323192 TATTACGAAA
* *
75323202 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
75323239 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
75323277 TCTT
1 TCTT
75323281 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:75323477 original size:47 final size:47
Alignment explanation
Indices: 75323402--75323595 Score: 226
Period size: 47 Copynumber: 4.0 Consensus size: 47
75323392 TTCGGGACTT
* * * * * * *
75323402 ATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCC
*
75323449 GTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATGGCC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC------CC
**
75323502 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 --ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCC
75323551 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
75323596 TTATCACAAT
Statistics
Matches: 128, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
47 82 0.64
53 2 0.02
55 44 0.34
ACGTcount: A:0.27, C:0.32, G:0.11, T:0.30
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCC
Found at i:75323513 original size:55 final size:55
Alignment explanation
Indices: 75323450--75323599 Score: 244
Period size: 47 Copynumber: 2.9 Consensus size: 55
75323440 CTCGGCCCCG
75323450 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATGGCCTTA
75323505 TCACATATATACACTTTCACATTCATCACATCGGCC---A----TTA-GGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATGGCCTTA
75323552 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
75323600 CACAATTTAG
Statistics
Matches: 87, Mismatches: 0, Indels: 16
0.84 0.00 0.16
Matches are distributed among these distances:
47 43 0.49
48 3 0.03
50 1 0.01
52 1 0.01
54 3 0.03
55 36 0.41
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (55 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATGGCCTTA
Found at i:75323575 original size:102 final size:102
Alignment explanation
Indices: 75323399--75323599 Score: 312
Period size: 102 Copynumber: 2.0 Consensus size: 102
75323389 CCCTTCGGGA
* * * * * *
75323399 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCCATCACATATATACAC
75323464 TTTCACATTCATCACATCGGCCATTAGGCCTTATGGC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATGGC
* * **
75323501 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCCATCACATATATACAC
75323566 TTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTAT
75323600 CACAATTTAG
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 89 1.00
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.32
Consensus pattern (102 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCCATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATGGC
Found at i:75327145 original size:40 final size:41
Alignment explanation
Indices: 75326960--75327145 Score: 193
Period size: 40 Copynumber: 4.6 Consensus size: 41
75326950 CCAGCATGAT
* *
75326960 TGCTCTTCGGAACCTAGCCCGGATATAA-CACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
* **
75327000 TGCTCTTCGGAACTTAGTCCGGATA-CCTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
* * * * * *
75327040 TGCTCTTCGGAATTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
** *
75327081 TGC-CTTCGGGTCTTAGCCCGGATATAATCACTAGCTC-AA
1 TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
*
75327120 TTGC-CTTCGGGACTTAGCCCGGATAT
1 -TGCTCTTCGGAACTTAGCCCGGATAT
75327146 CATTCAAATG
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.02
40 106 0.88
41 13 0.11
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (41 bp):
TGCTCTTCGGAACTTAGCCCGGATATAATCACTAGCACGAA
Found at i:75327474 original size:29 final size:29
Alignment explanation
Indices: 75327435--75327513 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75327425 CTTAATAATC
*
75327435 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75327465 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75327494 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75327514 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75327559 original size:43 final size:43
Alignment explanation
Indices: 75327498--75328371 Score: 1748
Period size: 43 Copynumber: 20.3 Consensus size: 43
75327488 ATTTCAAGCC
75327498 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327541 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327584 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327627 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327670 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327713 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327756 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327799 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327842 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327885 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327928 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75327971 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328014 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328057 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328100 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328143 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328186 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328229 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328272 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328315 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
75328358 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75328372 TGAAAACCAA
Statistics
Matches: 831, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 831 1.00
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.26
Consensus pattern (43 bp):
CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCT
Found at i:75329431 original size:64 final size:64
Alignment explanation
Indices: 75329330--75329456 Score: 245
Period size: 64 Copynumber: 2.0 Consensus size: 64
75329320 GATCCAGAAA
*
75329330 CCGTTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGTTCATATGATTGTTTC
1 CCGTTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGCTCATATGATTGTTTC
75329394 CCGTTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGCTCATATGATTGTTT
1 CCGTTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGCTCATATGATTGTTT
75329457 TGTTACTTTC
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (64 bp):
CCGTTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGCTCATATGATTGTTTC
Found at i:75330364 original size:38 final size:37
Alignment explanation
Indices: 75330291--75330369 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
75330281 TATTACGAAA
* *
75330291 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
75330328 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
75330366 TCTT
1 TCTT
75330370 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:75330566 original size:47 final size:47
Alignment explanation
Indices: 75330488--75330876 Score: 661
Period size: 47 Copynumber: 8.2 Consensus size: 47
75330478 CCCTTCGGGA
* * * * * *
75330488 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75330535 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75330582 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75330631 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75330679 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75330726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75330773 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75330821 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75330868 CTTATCACA
1 CTTATCACA
75330877 ATTTAGAATT
Statistics
Matches: 326, Mismatches: 12, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
47 191 0.59
48 89 0.27
49 42 0.13
50 4 0.01
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75330717 original size:95 final size:94
Alignment explanation
Indices: 75330488--75330876 Score: 661
Period size: 95 Copynumber: 4.1 Consensus size: 94
75330478 CCCTTCGGGA
* * * * * * *
75330488 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
75330553 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
75330582 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA-TCACATATATA
75330647 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACTTTCACATTCATCACATCGGCCATTAGGC
*
75330679 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
75330744 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
75330773 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACA
75330838 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
75330868 CTTATCACA
1 CTTATCACA
75330877 ATTTAGAATT
Statistics
Matches: 283, Mismatches: 8, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
94 60 0.21
95 136 0.48
96 36 0.13
97 51 0.18
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Done.