Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 226 of 276
Found at i:75330801 original size:142 final size:142
Alignment explanation
Indices: 75330488--75330876 Score: 672
Period size: 142 Copynumber: 2.7 Consensus size: 142
75330478 CCCTTCGGGA
* * * * * * * *
75330488 CTTA-TCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
75330552 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
75330617 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
*
75330631 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
75330696 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
75330761 CGGCCATTAGGC
131 CGGCCATTAGGC
75330773 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
75330838 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
75330877 ATTTAGAATT
Statistics
Matches: 235, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
142 142 0.60
143 3 0.01
144 90 0.38
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (142 bp):
CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:75344218 original size:14 final size:15
Alignment explanation
Indices: 75344199--75344228 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
75344189 ATATTTAACT
75344199 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
75344213 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
75344228 T
1 T
75344229 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:75350344 original size:43 final size:43
Alignment explanation
Indices: 75350283--75350370 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
75350273 ATAAATGAAT
*
75350283 TAAAAAGAAATAGTATCATTTTATATCATATTCTTCCCCAAAA
1 TAAAAAGAAATAATATCATTTTATATCATATTCTTCCCCAAAA
*
75350326 TAAAAAGAAATAATATCATTTTCTATCATATTCTTCCCCAAAA
1 TAAAAAGAAATAATATCATTTTATATCATATTCTTCCCCAAAA
75350369 TA
1 TA
75350371 TACATGGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.35
Consensus pattern (43 bp):
TAAAAAGAAATAATATCATTTTATATCATATTCTTCCCCAAAA
Found at i:75352677 original size:6 final size:6
Alignment explanation
Indices: 75352596--75352661 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
75352586 AAGAAACATT
* * *
75352596 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
75352645 ATCAGA ATCAGA ATCAG
1 ATCAGA ATCAGA ATCAG
75352662 GTGACAGAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
5 2 0.04
6 42 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:75352697 original size:19 final size:19
Alignment explanation
Indices: 75352647--75352699 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
75352637 GTGACAGAAT
*
75352647 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATTAGGTGA
75352666 CAGAATCAGAATTAGGTGA
1 CAGAATCAGAATTAGGTGA
*
75352685 CAGAATTAGAATTAG
1 CAGAATCAGAATTAG
75352700 AATCAGTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.21
Consensus pattern (19 bp):
CAGAATCAGAATTAGGTGA
Found at i:75352702 original size:25 final size:25
Alignment explanation
Indices: 75352617--75352677 Score: 122
Period size: 25 Copynumber: 2.4 Consensus size: 25
75352607 AATCAAAATG
75352617 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
75352642 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
75352667 AGAATCAGAAT
1 AGAATCAGAAT
75352678 TAGGTGACAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.16
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:75352733 original size:31 final size:31
Alignment explanation
Indices: 75352666--75352733 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
75352656 AATCAGGTGA
* * * * *
75352666 CAGAATCAGAATTAGGTGACAGAATTAGAAT
1 CAGAATCAGAATCAGGTAACAAAATCAAAAT
* *
75352697 TAGAATCAGTATCAGGTAACAAAATCAAAAT
1 CAGAATCAGAATCAGGTAACAAAATCAAAAT
75352728 CAGAAT
1 CAGAAT
75352734 GTGAATGCAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.22
Consensus pattern (31 bp):
CAGAATCAGAATCAGGTAACAAAATCAAAAT
Found at i:75353007 original size:67 final size:68
Alignment explanation
Indices: 75352879--75353012 Score: 198
Period size: 67 Copynumber: 2.0 Consensus size: 68
75352869 TCACCAGTTA
* * *
75352879 CAGATATTGTGGCTAGGCCACTAGAACAGATATATATGTGGCAAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACTAGAACAGA-ATATATGTGGCAAAGCCACCAGATTGCAGCGAGG
75352944 CTAC
65 CTAC
* * *
75352948 CAGATATTGTGACGAAGTCACTAGAACAG-ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGC
1 CAGATATTGTGACGAAGCCACTAGAACAGAATATATGTGGCAAAGCCACCAGATTGCAGCGAGGC
75353012 T
66 T
75353013 GCCATAATGC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 34 0.58
69 25 0.42
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (68 bp):
CAGATATTGTGACGAAGCCACTAGAACAGAATATATGTGGCAAAGCCACCAGATTGCAGCGAGGC
TAC
Found at i:75353264 original size:27 final size:27
Alignment explanation
Indices: 75353234--75353454 Score: 273
Period size: 27 Copynumber: 8.2 Consensus size: 27
75353224 AACACCCTAG
* *
75353234 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
75353261 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*** *
75353288 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
**
75353315 GGGTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
75353342 GGATAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
75353369 GGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
75353396 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
75353423 GGGTAAAACGGTAATTCTAG-AAACCGA
1 GGGTAAAATGGTAATTCT-GTAAATCGA
75353450 GGGTA
1 GGGTA
75353455 CTTTGGTAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
27 172 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GGGTAAAATGGTAATTCTGTAAATCGA
Found at i:75353462 original size:81 final size:80
Alignment explanation
Indices: 75353234--75353481 Score: 284
Period size: 81 Copynumber: 3.1 Consensus size: 80
75353224 AACACCCTAG
* ***
75353234 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
*
75353299 TAATTCTATAAATCGA
66 TAATTCT-TAAATTGA
** * * ** *
75353315 GGGTAAAATAATAATTCTGTAAATCGAGGATAAAATAGTAATTTTGTAAATCGAGGGTAAAATGG
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
75353380 TAATTCTGTAAATTGA
66 TAATTCT-TAAATTGA
* * ***
75353396 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAG-AAACCGAGGGTACTTTG
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCT-GTAAATCGAGGGTAAAATG
75353460 GTAATT-TTACAAGTTGA
65 GTAATTCTTA-AA-TTGA
75353477 GGGTA
1 GGGTA
75353482 TTTCAATAAT
Statistics
Matches: 139, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
79 2 0.01
80 3 0.02
81 133 0.96
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (80 bp):
GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
TAATTCTTAAATTGA
Found at i:75354657 original size:6 final size:6
Alignment explanation
Indices: 75354639--75354726 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
75354629 AAGAAACATT
* *
75354639 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
75354688 ATCAGA ATCAGT ATTAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
75354727 ATGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:75354684 original size:31 final size:31
Alignment explanation
Indices: 75354648--75354726 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
75354638 TATCAGAACT
*
75354648 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATTAGGTAAC
*
75354679 AGAATCAGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATTAGGTAAC
*
75354710 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
75354727 ATGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATTAGGTAAC
Found at i:75355124 original size:22 final size:21
Alignment explanation
Indices: 75355096--75355160 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
75355086 GCAAATACGT
75355096 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
75355118 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
75355140 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
75355161 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:75355644 original size:27 final size:27
Alignment explanation
Indices: 75355614--75355916 Score: 355
Period size: 27 Copynumber: 11.2 Consensus size: 27
75355604 AAGTATCTCG
* * *
75355614 GTAATTCCACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
75355641 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
75355668 GTAATTCTATCTTATAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75355694 GATAATTCTACCCTACAAGGGTATTTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
75355721 GATAATTCTACCCTACAGGGGTATTTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
75355748 GATAATTCTACCCTACAGGGTTATTGC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
75355775 GATAATTCTACCCTACAGGGATATTAC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
75355802 GATAATTCTACCTTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
75355830 ATAATTCTACCCTACAGGGGTATTGCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75355857 ATAATTCTACCCTACAGGGGTATTCCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75355884 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
75355911 GTAATT
1 GTAATT
75355917 TTATAAACTA
Statistics
Matches: 245, Mismatches: 29, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 244 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:75355684 original size:54 final size:54
Alignment explanation
Indices: 75355614--75355997 Score: 325
Period size: 54 Copynumber: 7.1 Consensus size: 54
75355604 AAGTATCTCG
* *
75355614 GTAATTCCACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
* * * ** *
75355668 GTAATTCTATCTTATAGGGGTA-TTGCGATAATTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTCA
* * *
75355721 GATAATTCTACCCTACAGGGGTA-TTTCGATAATTCTACCCTACAGGGTTATTGC-
1 G-TAATTCTACCCTACAGGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTCA
* * *
75355775 GATAATTCTACCCTACA-GGG-ATATTACGATAATTCTACCTTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTTA-G-TAATTCTACCCTACAGGGGTATTTCA
* ** * *
75355830 ATAATTCTACCCTACAGGGGTATTGCAATAATTCTACCCTACAGGGGTATTCCA
1 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
** * *** **
75355884 GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTA-TAAACTAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTAC-AGGGGTATTTCA
* ** * ** * *
75355938 GTAATTTTA-CAAACTAGGGGTATTTTGGTAATTCTATTCTATAGGGGTTTTTCA
1 GTAATTCTACCCTAC-AGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
75355992 GTAATT
1 GTAATT
75355998 TCACAATCGA
Statistics
Matches: 271, Mismatches: 49, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
52 1 0.00
53 14 0.05
54 248 0.92
55 5 0.02
56 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:75355929 original size:27 final size:27
Alignment explanation
Indices: 75355899--75355970 Score: 126
Period size: 27 Copynumber: 2.7 Consensus size: 27
75355889 TCTACCCTAC
* *
75355899 AGGGGTATTTCGGTAATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
75355926 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
75355953 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
75355971 CTATTCTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:75355943 original size:81 final size:81
Alignment explanation
Indices: 75355615--75355909 Score: 414
Period size: 81 Copynumber: 3.6 Consensus size: 81
75355605 AGTATCTCGG
* * * * *
75355615 TAATTCCACCCTATAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATC
1 TAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
* *
75355679 TTATAGGGGTATTGCGA
65 CTACAGGGGTATTGCGA
* *
75355696 TAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCC
*
75355761 TACAGGGTTATTGCGA
66 TACAGGGGTATTGCGA
* * * *
75355777 TAATTCTACCCTACAGGGATATTACGATAATTCTACCTTACAAGGGTATTTCAATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCC
*
75355842 TACAGGGGTATTGCAA
66 TACAGGGGTATTGCGA
*
75355858 TAATTCTACCCTACAGGGGTA-TTCCAGTAATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTC
75355910 GGTAATTTTA
Statistics
Matches: 189, Mismatches: 23, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
80 3 0.02
81 185 0.98
82 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCC
TACAGGGGTATTGCGA
Found at i:75356036 original size:27 final size:27
Alignment explanation
Indices: 75356002--75356199 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
75355992 GTAATTTCAC
* *
75356002 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
** *
75356029 AA-CTGAGGGTAAAATTGTAATTTTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
75356056 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
75356083 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* ** * *
75356110 AATTGAGGGTAAAACGAAAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
75356137 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
75356164 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
75356191 AATCGAGGG
1 AATCGAGGG
75356200 CATTTCAGTA
Statistics
Matches: 145, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:75356117 original size:81 final size:81
Alignment explanation
Indices: 75356002--75356199 Score: 281
Period size: 81 Copynumber: 2.4 Consensus size: 81
75355992 GTAATTTCAC
* * * * * *
75356002 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATTG-TAATTTTATAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAA-CGAAAATTTTATAAATCGAGGGT
75356066 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
* * *
75356083 AATCAAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGAAAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGAAAATTTTATAAATCGAGGGTA
75356148 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* *
75356164 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGG
75356200 CATTTCAGTA
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 103 0.99
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGAAAATTTTATAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:75356213 original size:81 final size:80
Alignment explanation
Indices: 75356045--75356219 Score: 242
Period size: 81 Copynumber: 2.2 Consensus size: 80
75356035 GGGTAAAATT
*
75356045 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTATA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTACA
* *
75356110 AATTGAGGGTAAAAC
66 AATCGAGGGCAAAAC
* * * *
75356125 GAAAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAC
1 G-TAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTAC
***
75356190 AAATCGAGGGCATTTC
65 AAATCGAGGGCAAAAC
75356206 AGTAATTTTATAAA
1 -GTAATTTTATAAA
75356220 CCAATGGTAT
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 79 0.98
82 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.30
Consensus pattern (80 bp):
GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTACA
AATCGAGGGCAAAAC
Found at i:75356231 original size:27 final size:27
Alignment explanation
Indices: 75356180--75356350 Score: 112
Period size: 27 Copynumber: 6.3 Consensus size: 27
75356170 GGGTAAAATG
* * *
75356180 GTAATTCTACAAATCGAGGGCATTTCA
1 GTAATTTTACAAATCAAGGGTATTTCA
* * *
75356207 GTAATTTTATAAACCAATGGTATTTCTA
1 GTAATTTTACAAATCAAGGGTATTTC-A
* *
75356235 -TAATTTTAAGAAAGTCAAGGGTATTTCT
1 GTAATTTT-ACAAA-TCAAGGGTATTTCA
** * * **
75356263 GTAATTTTGTAAATTAGGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTCA
*
75356290 GTAATTTTACAAATTGAA-GGTATTTCA
1 GTAATTTTACAAA-TCAAGGGTATTTCA
* * * **
75356317 GTAATTTCACAAACCAATGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTCA
75356344 GTAATTT
1 GTAATTT
75356351 GTAACTAAAG
Statistics
Matches: 111, Mismatches: 27, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
26 2 0.02
27 81 0.73
28 10 0.09
29 18 0.16
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTTCA
Found at i:75356342 original size:54 final size:54
Alignment explanation
Indices: 75356178--75356350 Score: 168
Period size: 54 Copynumber: 3.2 Consensus size: 54
75356168 GAGGGTAAAA
* * * *
75356178 TGGTAATTCTACAAATCGAGGGCATTTCAGTAATTTTATAAACCAATGGTATTT
1 TGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTTATAAACCAATGGTATTT
* * * * * * ** **
75356232 CT-ATAATTTTAAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTT
1 -TGGTAATTTT-ACAAATTGAA-GGTATTTCAGTAATTTTATAAACCAATGGTATTT
* *
75356288 TGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTCACAAACCAATGGTATTT
1 TGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTTATAAACCAATGGTATTT
75356342 TGGTAATTT
1 TGGTAATTT
75356351 GTAACTAAAG
Statistics
Matches: 89, Mismatches: 26, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
54 41 0.46
55 14 0.16
56 34 0.38
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.40
Consensus pattern (54 bp):
TGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTTATAAACCAATGGTATTT
Found at i:75357467 original size:307 final size:307
Alignment explanation
Indices: 75356933--75357496 Score: 950
Period size: 307 Copynumber: 1.8 Consensus size: 307
75356923 AGCCACAAGG
* * *
75356933 CTTTTTGTGTCATAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGGTTTGATT
1 CTTTTTGTGGCACAATTCCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGGTTTGATT
*
75356998 CACCTTAAACCAAAATTTTTGGTAGAGTCCAGATTTGAACCCAAGACTTCTCCAACACTTCTCAG
66 CACCTTAAACCAAAATTTTTGCTAGAGTCCAGATTTGAACCCAAGACTTCTCCAACACTTCTCAG
* *
75357063 CACACTTAACCACTAAAACAAGCCTTCAACTACGAAATTTTCACGCATAACAAAATATTATAAGC
131 CACACTTAACCACTAAAACAAGCCTTCAACTACGAAATTTACACGCACAACAAAATATTATAAGC
* * *
75357128 TATCTTCAATCGCTCCCATGCTCAAGGCCCAAAACTTCTAAGCCCAAATTCAGGGTGTTACAGTT
196 TACCTTCAACCGCTCCCATGCTCAAGGCCCAAAACTTCTAAGCCCAAATGCAGGGTGTTACAGTT
75357193 ACTTCCTTGTCCCCTAAGTGGTGCCACCTTGCCACTACACCACACTC
261 ACTTCCTTGTCCCCTAAGTGGTGCCACCTTGCCACTACACCACACTC
75357240 CTTTTTGTGGCACAATTCCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGGTTTGATT
1 CTTTTTGTGGCACAATTCCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGGTTTGATT
* *
75357305 CACCTTAAACCAAAATTTTTGCTAGAGTCCAGGTTTGAACCCAGGACTTCTCCAACACTTCTCAG
66 CACCTTAAACCAAAATTTTTGCTAGAGTCCAGATTTGAACCCAAGACTTCTCCAACACTTCTCAG
* * * *
75357370 CACACTTAACCACTAAAACAAGCCTT-GATTAAGGAAATTTACATGCACAACAAAATATTATAAG
131 CACACTTAACCACTAAAACAAGCCTTCAACT-ACGAAATTTACACGCACAACAAAATATTATAAG
* * *
75357434 CTACCTTCAACCGCTCCCATGCTGAAGGCCCAAAACTTCTAGGCCTAAATGCAGGGTGTTACA
195 CTACCTTCAACCGCTCCCATGCTCAAGGCCCAAAACTTCTAAGCCCAAATGCAGGGTGTTACA
75357497 TGCTAGGTTT
Statistics
Matches: 238, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
306 2 0.01
307 236 0.99
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (307 bp):
CTTTTTGTGGCACAATTCCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGGTTTGATT
CACCTTAAACCAAAATTTTTGCTAGAGTCCAGATTTGAACCCAAGACTTCTCCAACACTTCTCAG
CACACTTAACCACTAAAACAAGCCTTCAACTACGAAATTTACACGCACAACAAAATATTATAAGC
TACCTTCAACCGCTCCCATGCTCAAGGCCCAAAACTTCTAAGCCCAAATGCAGGGTGTTACAGTT
ACTTCCTTGTCCCCTAAGTGGTGCCACCTTGCCACTACACCACACTC
Found at i:75367658 original size:27 final size:27
Alignment explanation
Indices: 75367628--75367755 Score: 159
Period size: 27 Copynumber: 4.7 Consensus size: 27
75367618 TACTGAAATG
* * *
75367628 CCCTCAATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
75367655 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
75367682 CCCTTGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
75367709 CCCTCGATTTAT-GAAATTACCGTTTTA
1 CCCTCGATTTATAG-AATTACCGTTTTA
* *
75367736 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
75367756 TAAAATACCC
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:75367708 original size:54 final size:54
Alignment explanation
Indices: 75367650--75367754 Score: 185
Period size: 54 Copynumber: 1.9 Consensus size: 54
75367640 AGAATTACCA
*
75367650 TTTTACCCTCGATTTAT-AGAATTACCGTTTTACCCTTGATTTACAAAATTATCG
1 TTTTACCCTCGATTTATGA-AATTACCGTTTTACCCTCGATTTACAAAATTATCG
75367704 TTTTACCCTCGATTTATGAAATTACCGTTTTACCCTCGATTTACAAAATTA
1 TTTTACCCTCGATTTATGAAATTACCGTTTTACCCTCGATTTACAAAATTA
75367755 CTAAAATACC
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
54 48 0.98
55 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (54 bp):
TTTTACCCTCGATTTATGAAATTACCGTTTTACCCTCGATTTACAAAATTATCG
Found at i:75367764 original size:27 final size:27
Alignment explanation
Indices: 75367653--75367874 Score: 85
Period size: 27 Copynumber: 8.2 Consensus size: 27
75367643 ATTACCATTT
* * ****
75367653 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ****
75367680 TACCCTTGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
** ****
75367707 TACCCTCGATTTATGAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
75367734 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* ** * *
75367761 TACCCTTG-TAGGATAGAATTACCAAAA
1 TACCCTCGAT-TTACAAAATTACCAAAA
* **
75367788 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * **
75367815 TTCTC-CGAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
75367842 TACCC-CTGATTTACAAAATTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
75367869 TACCCT
1 TACCCT
75367875 TGACTTTCTA
Statistics
Matches: 155, Mismatches: 34, Indels: 11
0.77 0.17 0.05
Matches are distributed among these distances:
26 3 0.02
27 149 0.96
28 3 0.02
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:75367792 original size:54 final size:51
Alignment explanation
Indices: 75367734--75367876 Score: 133
Period size: 54 Copynumber: 2.6 Consensus size: 51
75367724 ATTACCGTTT
*
75367734 TACCCTCGATTTACAAAATTACTAAAATACCCTTGTAGGATAGAATTACCAAAA
1 TACCC-CGATTTACAAAATTAC-AAAATACCCTTGTAGG-TAAAATTACCAAAA
* ** * ** **
75367788 TACCCCTAGTTTGTAAAATTACCAAAATTCTCCGAGTTTGTAAAATTACCAAAA
1 TACCCCGA-TTTACAAAATTA-CAAAATAC-CCTTGTAGGTAAAATTACCAAAA
75367842 TACCCCTGATTTACAAAATTACAGAAATACCCTTG
1 TACCCC-GATTTACAAAATTACA-AAATACCCTTG
75367877 ACTTTCTAAA
Statistics
Matches: 69, Mismatches: 15, Indels: 11
0.73 0.16 0.12
Matches are distributed among these distances:
53 7 0.10
54 55 0.80
55 7 0.10
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (51 bp):
TACCCCGATTTACAAAATTACAAAATACCCTTGTAGGTAAAATTACCAAAA
Found at i:75367924 original size:27 final size:27
Alignment explanation
Indices: 75367851--75367936 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
75367841 ATACCCCTGA
* * *
75367851 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCATTG-G
*
75367879 TTT-CTAAAAATTATAGAAATACTATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
75367907 TTTACAAAATTACT-GAAATACCATTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
75367934 TTT
1 TTT
75367937 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
27 23 0.47
28 7 0.14
29 19 0.39
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:75368054 original size:27 final size:27
Alignment explanation
Indices: 75367990--75368054 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
75367980 AACCCTAATA
*
75367990 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
75368017 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
75368044 GGTAAAATGAC
1 GGTAAAATGAC
75368055 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:75368979 original size:25 final size:26
Alignment explanation
Indices: 75368856--75369029 Score: 264
Period size: 26 Copynumber: 6.8 Consensus size: 26
75368846 GAGGAAGTGC
*
75368856 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
75368882 AAAAGGGCTTATGTCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
75368908 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
75368934 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
75368960 AAAAGGGCTT-TGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
75368985 AAAAGGGCTT-TGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATCG
75369010 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
75369030 ATTAAAGAGG
Statistics
Matches: 139, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 57 0.41
26 82 0.59
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:75369324 original size:31 final size:31
Alignment explanation
Indices: 75369288--75369371 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
75369278 CGTTTACAGT
* *
75369288 AAAGGCTTTGGCCTAGTGATATGAATTATGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
75369319 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
75369350 AAAGGCTTCTGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
75369372 TCGAGACTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTATGA
Found at i:75372264 original size:20 final size:20
Alignment explanation
Indices: 75372235--75372276 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
75372225 AGCACATGTA
75372235 TTCATAAAATTTCAAAAATT
1 TTCATAAAATTTCAAAAATT
* * *
75372255 TTCATCAAATTTTACAAATT
1 TTCATAAAATTTCAAAAATT
75372275 TT
1 TT
75372277 TATTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
TTCATAAAATTTCAAAAATT
Found at i:75374482 original size:49 final size:51
Alignment explanation
Indices: 75374399--75374501 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 51
75374389 CAAACGGTCT
*
75374399 CAGTATCAGTATCAGTGTGGGCCTTAGCCCATTTCATTTAGGCCTTAGCCCATTA
1 CAGTATCAGTATCAGTGTGGGCCTT----CATTTCATTTACGCCTTAGCCCATTA
75374454 CAGTATCAGTATCAGTGTGGGCC-T-ATTTCATTTACGCCTTAGCCCATT
1 CAGTATCAGTATCAGTGTGGGCCTTCATTTCATTTACGCCTTAGCCCATT
75374502 TTAGTGTCTA
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
49 23 0.49
54 1 0.02
55 23 0.49
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.34
Consensus pattern (51 bp):
CAGTATCAGTATCAGTGTGGGCCTTCATTTCATTTACGCCTTAGCCCATTA
Found at i:75380543 original size:16 final size:16
Alignment explanation
Indices: 75380522--75380555 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
75380512 ATGAATCGAC
*
75380522 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
75380538 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
75380554 AA
1 AA
75380556 CACCCTTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.21, G:0.24, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:75381239 original size:16 final size:16
Alignment explanation
Indices: 75381215--75381255 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
75381205 TGAATCGACC
*
75381215 AAAGCTGAAATGCCGA
1 AAAGCTGAAATGCCAA
*
75381231 AAAGTTGAAATGCCAA
1 AAAGCTGAAATGCCAA
75381247 AAAGCTGAA
1 AAAGCTGAA
75381256 TGTTTGGCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.49, C:0.15, G:0.22, T:0.15
Consensus pattern (16 bp):
AAAGCTGAAATGCCAA
Found at i:75381522 original size:29 final size:28
Alignment explanation
Indices: 75381467--75381581 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
75381457 GTGAGCATGA
* * *
75381467 ATATGAATGTGAATGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
75381495 ATATAAATGTGATTTGGGCCCAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
** * *
75381524 ATATACTTGTGATTTGGGCCTAATAGACC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
75381553 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
75381581 A
1 A
75381582 AATACAGGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 25 0.36
29 45 0.64
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:75382685 original size:17 final size:18
Alignment explanation
Indices: 75382653--75382686 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75382643 TTTAAGAAGG
75382653 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
75382671 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
75382687 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:75385745 original size:16 final size:16
Alignment explanation
Indices: 75385719--75385756 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
75385709 TATGAATCGG
*
75385719 CAAAA-GCCGAAATGT
1 CAAAATGCCGAAAAGT
*
75385734 CGAAATGCCGAAAAGT
1 CAAAATGCCGAAAAGT
75385750 CAAAATG
1 CAAAATG
75385757 TCAAAAAGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.13
Consensus pattern (16 bp):
CAAAATGCCGAAAAGT
Found at i:75386040 original size:29 final size:28
Alignment explanation
Indices: 75385980--75386102 Score: 115
Period size: 29 Copynumber: 4.4 Consensus size: 28
75385970 GTGAGCATGA
* * ** *
75385980 ATATGAATGTGACTGGGCCTAACAGGCA
1 ATATAAATGTGATTGGGCCTAATGGGCC
75386008 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
75386037 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGA-TTGGGCCTAATGGGCC
* * *
75386066 ATAT-GATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
* *
75386093 AGATACATGT
1 ATATAAATGT
75386103 ATGTGAATTT
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
27 19 0.24
28 17 0.21
29 42 0.52
30 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:75390380 original size:27 final size:27
Alignment explanation
Indices: 75390350--75390467 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
75390340 CCTTAATCGA
*
75390350 TAAAATGACTATTTTGCCCTTTTGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
75390377 TAAAATGACTATTTTTCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * *
75390404 TGAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * *
75390431 TAAAATGACAATTCTG-CCTCTATGTGG
1 TAAAATGACTATTTTGCCCT-TATGAGG
75390458 TAAAATGACT
1 TAAAATGACT
75390468 GAAATGCCCT
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.04
27 76 0.96
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:75390476 original size:54 final size:54
Alignment explanation
Indices: 75390364--75390479 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
75390354 ATGACTATTT
* * * * * ***
75390364 TGCCCTTTTGAGGTAAAATGACTATTTTTCCCTTATGAGGTGAAATGACTGTTT
1 TGCCCTTATGAGGTAAAATGACAATTCTGCCCTTATGAGGTAAAATGACTGAAA
* *
75390418 TGCCCTTATGTGGTAAAATGACAATTCTG-CCTCTATGTGGTAAAATGACTGAAA
1 TGCCCTTATGAGGTAAAATGACAATTCTGCCCT-TATGAGGTAAAATGACTGAAA
75390472 TGCCCTTA
1 TGCCCTTA
75390480 CATGGTAAGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 3 0.06
54 48 0.94
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (54 bp):
TGCCCTTATGAGGTAAAATGACAATTCTGCCCTTATGAGGTAAAATGACTGAAA
Found at i:75390873 original size:18 final size:18
Alignment explanation
Indices: 75390850--75390892 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
75390840 CTGTTTAAAT
75390850 TGTTACTG-TACTGATTAC
1 TGTTACTGCT-CTGATTAC
*
75390868 TGTTACTGCTCTGTTTAC
1 TGTTACTGCTCTGATTAC
75390886 TGTTACT
1 TGTTACT
75390893 ATAATGGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 22 0.96
19 1 0.04
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (18 bp):
TGTTACTGCTCTGATTAC
Found at i:75393110 original size:46 final size:46
Alignment explanation
Indices: 75393060--75393232 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
75393050 TGGTTGAGCA
* *
75393060 TCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
75393106 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
75393153 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
75393199 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75393233 GGGCCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 58 0.55
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:75393216 original size:93 final size:93
Alignment explanation
Indices: 75393057--75393227 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
75393047 GGATGGTTGA
*
75393057 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
75393122 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
75393150 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
75393214 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
75393228 ACTTAGGGCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75393492 original size:19 final size:20
Alignment explanation
Indices: 75393457--75393494 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
75393447 ATAAGGTGGT
75393457 AAGATGGTGAATGATGTTTA
1 AAGATGGTGAATGATGTTTA
75393477 AAGAT-GTGATAT-ATGTTT
1 AAGATGGTGA-ATGATGTTT
75393495 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.39
Consensus pattern (20 bp):
AAGATGGTGAATGATGTTTA
Found at i:75395606 original size:42 final size:42
Alignment explanation
Indices: 75395494--75395654 Score: 153
Period size: 43 Copynumber: 3.8 Consensus size: 42
75395484 GAAAAGCTCG
* * *
75395494 TACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAA
* * * * *
75395536 TATCGATGCC-TCTGTCCCAGACAGGGTCTTACACGAAATGAAG
1 TA-CAATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAA
* * * *
75395579 TACGATGCCAATGTCCTAGAGATGGTCTTACACGTAAATCATAA
1 TACAATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA-AA
* *
75395623 TCCAATGCCAACGTCCTAGACATGGTCTTACA
1 TACAATGCCAACGTCCCAGACATGGTCTTACA
75395655 TGATAACACA
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
42 29 0.31
43 37 0.39
44 29 0.31
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
TACAATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAA
Found at i:75399058 original size:98 final size:98
Alignment explanation
Indices: 75398889--75399083 Score: 381
Period size: 98 Copynumber: 2.0 Consensus size: 98
75398879 CTTGGCCGAA
75398889 TTGAAGGAAGGAATAGGGGCAAAGAACTTTCGGCCATTTGAAGGTTTAATAAGGTTAGTATATTG
1 TTGAAGGAAGGAATAGGGGCAAAGAACTTTCGGCCATTTGAAGGTTTAATAAGGTTAGTATATTG
75398954 TGTTAAAGTTGTGAAATTTTAGCTTGTTTTAGG
66 TGTTAAAGTTGTGAAATTTTAGCTTGTTTTAGG
*
75398987 TTGAAGGAAGGAATAGGGGCAAAGAACTTTCGGCCATTTGAATGTTTAATAAGGTTAGTATATTG
1 TTGAAGGAAGGAATAGGGGCAAAGAACTTTCGGCCATTTGAAGGTTTAATAAGGTTAGTATATTG
75399052 TGTTAAAGTTGTGAAATTTTAGCTTGTTTTAG
66 TGTTAAAGTTGTGAAATTTTAGCTTGTTTTAG
75399084 ATTAATTATC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (98 bp):
TTGAAGGAAGGAATAGGGGCAAAGAACTTTCGGCCATTTGAAGGTTTAATAAGGTTAGTATATTG
TGTTAAAGTTGTGAAATTTTAGCTTGTTTTAGG
Found at i:75400138 original size:28 final size:27
Alignment explanation
Indices: 75400081--75400232 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
75400071 TAAATTGTGC
* *
75400081 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
75400108 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
75400136 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75400163 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
75400191 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75400218 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75400233 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:75400146 original size:55 final size:55
Alignment explanation
Indices: 75400081--75400232 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
75400071 TAAATTGTGC
* *
75400081 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
75400136 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
75400191 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
75400233 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:75401558 original size:169 final size:169
Alignment explanation
Indices: 75401351--75401688 Score: 640
Period size: 169 Copynumber: 2.0 Consensus size: 169
75401341 CTTTGGAAAT
75401351 TCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATAGATGTATAGATTCCTCTCTGAGTC
1 TCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATAGATGTATAGATTCCTCTCTGAGTC
*
75401416 TAGTTTCTATAGAAACAAACGGTATCAGTATGGAAGTTCTGTACAGGGAGATATCCAGGTCGTAA
66 TAGTTTCTATAGAAACAAACGGCATCAGTATGGAAGTTCTGTACAGGGAGATATCCAGGTCGTAA
75401481 TGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGAA
131 TGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGAA
*
75401520 TCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATATATGTATAGATTCCTCTCTGAGTC
1 TCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATAGATGTATAGATTCCTCTCTGAGTC
* *
75401585 TAGTTTCTATAGAAACAAACGGCATCAGTATGGAAGTTCTGTACGGGGATATATCCAGGTCGTAA
66 TAGTTTCTATAGAAACAAACGGCATCAGTATGGAAGTTCTGTACAGGGAGATATCCAGGTCGTAA
75401650 TGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGAA
131 TGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGAA
75401689 GACTTTGACT
Statistics
Matches: 165, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
169 165 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (169 bp):
TCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATAGATGTATAGATTCCTCTCTGAGTC
TAGTTTCTATAGAAACAAACGGCATCAGTATGGAAGTTCTGTACAGGGAGATATCCAGGTCGTAA
TGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGAA
Found at i:75404140 original size:70 final size:70
Alignment explanation
Indices: 75404063--75404204 Score: 266
Period size: 70 Copynumber: 2.0 Consensus size: 70
75404053 ATAAAATTCC
75404063 AAATTTGAAATCCAGAAAATTACAACAGCTTTACTACAACCCACATAAAACATTTAAAAGTAATA
1 AAATTTGAAATCCAGAAAATTACAACAGCTTTACTACAACCCACATAAAACATTTAAAAGTAATA
75404128 ATCAA
66 ATCAA
* *
75404133 AAATTTGAAATCTAGAAAATTACAACGGCTTTACTACAACCCACATAAAACATTTAAAAGTAATA
1 AAATTTGAAATCCAGAAAATTACAACAGCTTTACTACAACCCACATAAAACATTTAAAAGTAATA
75404198 ATCAA
66 ATCAA
75404203 AA
1 AA
75404205 CTATAAAATA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.51, C:0.18, G:0.06, T:0.25
Consensus pattern (70 bp):
AAATTTGAAATCCAGAAAATTACAACAGCTTTACTACAACCCACATAAAACATTTAAAAGTAATA
ATCAA
Found at i:75404511 original size:6 final size:6
Alignment explanation
Indices: 75404473--75404591 Score: 66
Period size: 6 Copynumber: 19.3 Consensus size: 6
75404463 AAGAAACATT
* * * *
75404473 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATCAGA ATCAGGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
75404522 ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
75404573 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
75404592 GTGAATGCAG
Statistics
Matches: 84, Mismatches: 18, Indels: 22
0.68 0.15 0.18
Matches are distributed among these distances:
5 6 0.07
6 66 0.79
7 8 0.10
8 4 0.05
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:75404525 original size:25 final size:25
Alignment explanation
Indices: 75404494--75404563 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
75404484 AATCAAAATG
* *
75404494 AGAATCAAAATCAGAATCAGGTGAT
1 AGAATCAGAATCAGAATCAGGTGAC
*
75404519 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
75404544 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
75404564 TATCAGGTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:75404553 original size:31 final size:31
Alignment explanation
Indices: 75404518--75404591 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
75404508 AATCAGGTGA
* *
75404518 TAGAATCAGAATCAGAATTAGGTGACAGAAT
1 TAGAATCAGAATCAGAATCAGGTAACAGAAT
*
75404549 TAGAATCAGAATCAGTATCAGGTAACAGAAT
1 TAGAATCAGAATCAGAATCAGGTAACAGAAT
* *
75404580 CAAAATCAGAAT
1 TAGAATCAGAAT
75404592 GTGAATGCAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.22
Consensus pattern (31 bp):
TAGAATCAGAATCAGAATCAGGTAACAGAAT
Found at i:75404872 original size:67 final size:67
Alignment explanation
Indices: 75404777--75404919 Score: 234
Period size: 67 Copynumber: 2.1 Consensus size: 67
75404767 TATATATCTA
* * * *
75404777 TGGCGAAGCCACCAGATTGCTGTGAGGCTGCCAGATATTGTGAC-GAACTCACCAGAACAGATAT
1 TGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACAGAA-TCACCAGAACAGATAT
75404841 ATG
65 ATG
75404844 TGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACAGAATCACCAGAACAGATATA
1 TGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACAGAATCACCAGAACAGATATA
75404909 TG
66 TG
75404911 TGGCGAGGC
1 TGGCGAGGC
75404920 TGGCAGAACG
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
67 68 0.96
68 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (67 bp):
TGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACAGAATCACCAGAACAGATATA
TG
Found at i:75405174 original size:27 final size:27
Alignment explanation
Indices: 75405144--75405410 Score: 295
Period size: 27 Copynumber: 9.9 Consensus size: 27
75405134 AACACCCTAG
* * *
75405144 GGGTAAAATGGTAATTTTATAAATAGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * *
75405171 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
75405198 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * **
75405225 GGGTAAAACAATAATTTTGTAAATAAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
75405252 GGGTAAAACAGTAATTCTGTTAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
75405279 GGTTAAAAT-GATAATTCTGTAAATCGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
*
75405306 GGGTAAAATAGTAATTTTGTAAAT-AA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
75405332 GGGTAAAATAATAATTCTGTAAACCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
75405359 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
75405386 GGGTAAAACAGTTATTTTGTAAATC
1 GGGTAAAATAGTAATTTTGTAAATC
75405411 TAGGATATTT
Statistics
Matches: 206, Mismatches: 31, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.11
27 182 0.88
28 1 0.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:75405279 original size:81 final size:80
Alignment explanation
Indices: 75405144--75405409 Score: 345
Period size: 81 Copynumber: 3.3 Consensus size: 80
75405134 AACACCCTAG
** * * * *
75405144 GGGTAAAATGGTAATTTTATAAATAGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
1 GGGTAAAACAGTAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA-AG
75405209 TAATTTTGTAAATCGA
65 TAATTTTGTAAATCGA
* * * *
75405225 GGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTTAATCGAGGTTAAAATGA
1 GGGTAAAACAGTAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAAG-
*
75405290 TAATTCTGTAAATCGA
65 TAATTTTGTAAATCGA
* * * *
75405306 GGGTAAAATAGTAATTTTGTAAAT-AAGGGTAAAATAATAATTCTGTAAACCGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA-AG
*
75405370 TAATTTTGTAAATTGA
65 TAATTTTGTAAATCGA
*
75405386 GGGTAAAACAGTTATTTTGTAAAT
1 GGGTAAAACAGTAATTTTGTAAAT
75405410 CTAGGATATT
Statistics
Matches: 160, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 69 0.43
81 91 0.57
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (80 bp):
GGGTAAAACAGTAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAAGT
AATTTTGTAAATCGA
Found at i:75405454 original size:134 final size:134
Alignment explanation
Indices: 75405147--75405417 Score: 317
Period size: 134 Copynumber: 2.0 Consensus size: 134
75405137 ACCCTAGGGG
* * ** ** * * * *
75405147 TAAAATGGTAATTTTATAAATAGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAA
1 TAAAATGATAATTCTATAAACCGAGGGTAAAATAGTAATTTTGTAAAT-AAGGGTAAAACAATAA
* * *
75405212 TTTTGTAAATCGAGGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTTAATC
65 TTCTGTAAACCGAGGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATC
*
75405277 GAGGT
130 GAGGA
* * *
75405282 TAAAATGATAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATAAGGGTAAAATAATAAT
1 TAAAATGATAATTCTATAAACCGAGGGTAAAATAGTAATTTTGTAAATAAGGGTAAAACAATAAT
* * ** * * *
75405347 TCTGTAAACCGAGGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACAGTTATTTTGTAAATCT
66 TCTGTAAACCGAGGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCG
75405412 AGGA
131 AGGA
75405416 TA
1 TA
75405418 TTTGGGTAAT
Statistics
Matches: 114, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
134 74 0.65
135 40 0.35
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.32
Consensus pattern (134 bp):
TAAAATGATAATTCTATAAACCGAGGGTAAAATAGTAATTTTGTAAATAAGGGTAAAACAATAAT
TCTGTAAACCGAGGGTAAAACAATAATTTTGTAAATAAAGGGTAAAACAGTAATTCTGTAAATCG
AGGA
Found at i:75405479 original size:26 final size:27
Alignment explanation
Indices: 75405423--75405480 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
75405413 GGATATTTGG
* *
75405423 GTAATTTTATAAACCGGGGGTACTTTG
1 GTAATGTTATAAACCGGGGGTACTTTA
*
75405450 GTAATGTTAT-AACTGGGGGTA-TTTCA
1 GTAATGTTATAAACCGGGGGTACTTT-A
75405476 GTAAT
1 GTAAT
75405481 TTGGTAAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 3 0.11
26 15 0.56
27 9 0.33
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.38
Consensus pattern (27 bp):
GTAATGTTATAAACCGGGGGTACTTTA
Found at i:75418696 original size:27 final size:27
Alignment explanation
Indices: 75418660--75418713 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
75418650 TGTCATGTGA
* *
75418660 AATTGAATGTCAAATTATTGTTACATG
1 AATTGAATGTCAAATTACTATTACATG
*
75418687 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGTCAAATTACTATTACATG
75418714 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (27 bp):
AATTGAATGTCAAATTACTATTACATG
Found at i:75419132 original size:50 final size:49
Alignment explanation
Indices: 75418954--75419198 Score: 222
Period size: 49 Copynumber: 4.9 Consensus size: 49
75418944 TCTATTGTGA
* * * **
75418954 GGTCACGTATGTAGTACTAAATGCAAACTACTACGTGTACC-GAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATT
** * * * *
75419003 GGTCGTATGTGTAGTACTAAGTGCAGGGTACTATGCGTACCTGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* ** * **
75419053 CGATCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
75419103 AGGTCACATGTGTAGAACTAAGTGAAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
75419153 GGTCGCATGTGTCGTACTAAGTGCAGGCTATTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
75419199 GCCTTGTCTA
Statistics
Matches: 153, Mismatches: 40, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
49 73 0.48
50 45 0.29
51 35 0.23
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:75421164 original size:19 final size:19
Alignment explanation
Indices: 75421126--75421165 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
75421116 AAGCTCACAA
*
75421126 TTTCATATACAACATATAC
1 TTTCATATACAAAATATAC
* *
75421145 TTTCATATATAAAATTTAC
1 TTTCATATACAAAATATAC
75421164 TT
1 TT
75421166 GGCCGATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTCATATACAAAATATAC
Found at i:75422809 original size:14 final size:15
Alignment explanation
Indices: 75422792--75422820 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75422782 TAACGAAAAT
75422792 TTCACACAT-ATAAA
1 TTCACACATAATAAA
75422806 TTCACACATAATAAA
1 TTCACACATAATAAA
75422821 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:75427929 original size:14 final size:15
Alignment explanation
Indices: 75427912--75427943 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
75427902 TAAATCAAAA
75427912 AAATTCACACAT-AT
1 AAATTCACACATAAT
75427926 AAATTCACACATAAT
1 AAATTCACACATAAT
75427941 AAA
1 AAA
75427944 CATAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATTCACACATAAT
Found at i:75430914 original size:8 final size:8
Alignment explanation
Indices: 75430903--75430927 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75430893 TTAAACTTCT
75430903 TCACTTAC
1 TCACTTAC
75430911 TCACTTAC
1 TCACTTAC
75430919 TCACTTAC
1 TCACTTAC
75430927 T
1 T
75430928 TAAATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (8 bp):
TCACTTAC
Found at i:75430935 original size:16 final size:16
Alignment explanation
Indices: 75430916--75430946 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75430906 CTTACTCACT
75430916 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
75430932 TACTTACTTACTTAA
1 TACTCACTTACTTAA
75430947 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:75430952 original size:20 final size:20
Alignment explanation
Indices: 75430913--75430952 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75430903 TCACTTACTC
* *
75430913 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
75430933 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
75430953 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:75431392 original size:55 final size:54
Alignment explanation
Indices: 75431140--75431394 Score: 224
Period size: 55 Copynumber: 4.8 Consensus size: 54
75431130 ACACGGGTAC
* * *
75431140 CTTACC-ATTGCCATGACTTGCCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * * *
75431189 CTTACC-ATTACCATGTCTCGACATGGTCTTACATGGCATTCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
75431242 CTCA-CAAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * *
75431297 CTTATCAA-TGTCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
75431350 CCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
75431395 CAACCCTAAT
Statistics
Matches: 165, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
49 36 0.22
52 4 0.02
53 41 0.25
54 11 0.07
55 68 0.41
56 5 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:75431833 original size:78 final size:78
Alignment explanation
Indices: 75431732--75431885 Score: 238
Period size: 78 Copynumber: 2.0 Consensus size: 78
75431722 CCTTGACTCA
* *
75431732 AACTTTGCCAAAATTACATTTTTGCCCCTAAACTTTTACATATTTACACTTTTGCCCCAAGGATC
1 AACTTTGCCAAAATTACATTTTTGCCCCTAAACTTTCACATATTTACACTTTTACCCCAAGGATC
75431797 ATAAATTAAACAG
66 ATAAATTAAACAG
** *
75431810 AACTTTGGTAAAATTACCA-TTTTGCCCCTAAACTTTCACATATTTACACTTTTACCCCAAGGCT
1 AACTTTGCCAAAATTA-CATTTTTGCCCCTAAACTTTCACATATTTACACTTTTACCCCAAGGAT
*
75431874 CGTAAATTAAAC
65 CATAAATTAAAC
75431886 CTCATCCTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
78 67 0.97
79 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (78 bp):
AACTTTGCCAAAATTACATTTTTGCCCCTAAACTTTCACATATTTACACTTTTACCCCAAGGATC
ATAAATTAAACAG
Found at i:75436355 original size:14 final size:13
Alignment explanation
Indices: 75436302--75436358 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
75436292 TGACACTTTA
*
75436302 TTTTGAAGATATG
1 TTTTAAAGATATG
* *
75436315 TTTTCAAGTTA-G
1 TTTTAAAGATATG
* *
75436327 TTTTTAAGCTATG
1 TTTTAAAGATATG
75436340 TTTTAAAAGATATG
1 TTTT-AAAGATATG
75436354 TTTTA
1 TTTTA
75436359 CGTGTGCTCC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
12 10 0.28
13 15 0.42
14 11 0.31
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.51
Consensus pattern (13 bp):
TTTTAAAGATATG
Found at i:75436406 original size:13 final size:14
Alignment explanation
Indices: 75436388--75436440 Score: 83
Period size: 14 Copynumber: 3.9 Consensus size: 14
75436378 CTATGCTTTC
75436388 AAGTAT-GTTTTAT
1 AAGTATAGTTTTAT
75436401 AAGTATAGTTTTAT
1 AAGTATAGTTTTAT
75436415 AAGTATAGTTTTAT
1 AAGTATAGTTTTAT
75436429 AAGCTAT-GTTTT
1 AAG-TATAGTTTT
75436441 TGCAATCTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
13 6 0.16
14 29 0.76
15 3 0.08
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (14 bp):
AAGTATAGTTTTAT
Found at i:75441409 original size:22 final size:22
Alignment explanation
Indices: 75441383--75441430 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
75441373 AAACCATGAC
75441383 ATACATAAGTCATGGACCTAAT
1 ATACATAAGTCATGGACCTAAT
75441405 ATACATAAGTCATGGACCTAAT
1 ATACATAAGTCATGGACCTAAT
75441427 ATAC
1 ATAC
75441431 TAACTTTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (22 bp):
ATACATAAGTCATGGACCTAAT
Found at i:75444423 original size:20 final size:20
Alignment explanation
Indices: 75444376--75444423 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
75444366 TTAAAGAAGC
*
75444376 AATTAAATCAATTTGATTAA
1 AATTAAATCAAATTGATTAA
* **
75444396 AATCAAATCAAATTGATTGG
1 AATTAAATCAAATTGATTAA
75444416 AATTAAAT
1 AATTAAAT
75444424 AAAGTCAGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.35
Consensus pattern (20 bp):
AATTAAATCAAATTGATTAA
Found at i:75447110 original size:40 final size:40
Alignment explanation
Indices: 75447016--75447131 Score: 171
Period size: 40 Copynumber: 2.9 Consensus size: 40
75447006 TACTCGAATG
*
75447016 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
75447057 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
*
75447097 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
75447132 TGACCATAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
39 1 0.01
40 37 0.55
41 28 0.42
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:75449994 original size:76 final size:77
Alignment explanation
Indices: 75449866--75450114 Score: 243
Period size: 77 Copynumber: 3.2 Consensus size: 77
75449856 TAAAATTCTA
* * * * * * *
75449866 AAACAAAATCAAAATCAATTCTATTGAATGGCAAGATTAAATCCCAAAACAGAATTATTTAATTA
1 AAACAAAATCAAAATAAAATCTGTTAAATAGCAAGAATAAATCCCGAAACAGAATTATTTAATTA
* *
75449931 AATCTTGTTTAG
66 ATTCTTGTTTGG
* *
75449943 AAACAAAATCAAAATAAAATATGTTAAATAGC-AGAATAAATCCCGAAACAGAAATATTTAATTA
1 AAACAAAATCAAAATAAAATCTGTTAAATAGCAAGAATAAATCCCGAAACAGAATTATTTAATTA
*
75450007 ATTTTTCGTTTGG
66 ATTCTT-GTTTGG
* * * *
75450020 AAATAAAATCAAAATCAAATAAAATCTGTTAAACAACGAA-AATAAATCCTGAAACAG-ATTATT
1 AAACAAAATC---A--AAATAAAATCTGTTAAATAGC-AAGAATAAATCCCGAAACAGAATTATT
* *
75450083 GAATTATTTCTTGTTTGG
60 TAATTAATTCTTGTTTGG
*
75450101 AAACAATATCAAAA
1 AAACAAAATCAAAA
75450115 AGGAATAAAA
Statistics
Matches: 141, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
76 36 0.26
77 40 0.28
78 1 0.01
80 1 0.01
81 14 0.10
82 32 0.23
83 16 0.11
84 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (77 bp):
AAACAAAATCAAAATAAAATCTGTTAAATAGCAAGAATAAATCCCGAAACAGAATTATTTAATTA
ATTCTTGTTTGG
Found at i:75450034 original size:83 final size:81
Alignment explanation
Indices: 75449903--75450114 Score: 213
Period size: 82 Copynumber: 2.7 Consensus size: 81
75449893 ATGGCAAGAT
* * ** *
75449903 TAAATCCCAAAACAGAATTATTTAATTAAATCTTGTTTAGAAACAAAATC---A--AAATAAAAT
1 TAAATCCCGAAACAGAA-TATTGAATTATTTCTTGTTTGGAAACAAAATCAAAATCAAATAAAAT
* * *
75449963 ATGTTAAATAGC-AGAA
65 ATGTTAAACAACGAAAA
* *
75449979 TAAATCCCGAAACAGAAATATTTAATTAATTT-TTCGTTTGGAAATAAAATCAAAATCAAATAAA
1 TAAATCCCGAAACAG-AATATTGAATT-ATTTCTT-GTTTGGAAACAAAATCAAAATCAAATAAA
*
75450043 ATCTGTTAAACAACGAAAA
63 ATATGTTAAACAACGAAAA
* * *
75450062 TAAATCCTGAAACAGATTATTGAATTATTTCTTGTTTGGAAACAATATCAAAA
1 TAAATCCCGAAACAGAATATTGAATTATTTCTTGTTTGGAAACAAAATCAAAA
75450115 AGGAATAAAA
Statistics
Matches: 112, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
76 25 0.22
77 18 0.16
80 1 0.01
81 22 0.20
82 29 0.26
83 17 0.15
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (81 bp):
TAAATCCCGAAACAGAATATTGAATTATTTCTTGTTTGGAAACAAAATCAAAATCAAATAAAATA
TGTTAAACAACGAAAA
Found at i:75450122 original size:81 final size:81
Alignment explanation
Indices: 75449903--75450252 Score: 275
Period size: 81 Copynumber: 4.4 Consensus size: 81
75449893 ATGGCAAGAT
** * ** *
75449903 TAAATCCCAAAACAGAATTATTTAATTAAATCTTGTTTAGAAACAAAATC--AA---AATAAAAT
1 TAAATCCTGAAACAG-ATTATTCAATTATTTCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
*
75449963 ATGTTAAATAGC-AGAA
65 CTGTTAAATAGCGAGAA
* * * * *
75449979 TAAATCCCGAAACAGAAATATTTAATTAATTT-TTCGTTTGGAAATAAAATCAAAATCAAATAAA
1 TAAATCCTGAAACAG-ATTATTCAATT-ATTTCTT-GTTTGGAAACAAAATCAAAATCGAATAAA
* * *
75450043 ATCTGTTAAACAACGAAAA
63 ATCTGTTAAATAGCGAGAA
* * **
75450062 TAAATCCTGAAACAGATTATTGAATTATTTCTTGTTTGGAAACAATATCAAAAAGGAATAAAATC
1 TAAATCCTGAAACAGATTATTCAATTATTTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
* * * *
75450127 TATTGAATGGTGAGAA
66 TGTTAAATAGCGAGAA
* * ** * *
75450143 TAAATCCTGAAATAGATTATTCAATTGTTTCTCATTTGGAAACAAAATTAGAATCGAATAAAATC
1 TAAATCCTGAAACAGATTATTCAATTATTTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
* * *
75450208 TTTTAAATGGC-AGGAT
66 TGTTAAATAGCGA-GAA
* * * *
75450224 TAAATCCAGAAATATATTATTAAATTATT
1 TAAATCCTGAAACAGATTATTCAATTATT
75450253 AATTTTTATT
Statistics
Matches: 221, Mismatches: 43, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
76 27 0.12
77 16 0.07
79 2 0.01
80 1 0.00
81 130 0.59
82 28 0.13
83 17 0.08
ACGTcount: A:0.47, C:0.10, G:0.11, T:0.32
Consensus pattern (81 bp):
TAAATCCTGAAACAGATTATTCAATTATTTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
TGTTAAATAGCGAGAA
Found at i:75450897 original size:20 final size:20
Alignment explanation
Indices: 75450872--75450920 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
75450862 AGGAGCAATT
*
75450872 AAATCAATTTGATTAAAATC
1 AAATCAAATTGATTAAAATC
**
75450892 AAATCAAATTGATTGGAATC
1 AAATCAAATTGATTAAAATC
*
75450912 AAATAAAAT
1 AAATCAAAT
75450921 CAAGACATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATC
Found at i:75453279 original size:60 final size:60
Alignment explanation
Indices: 75453186--75453333 Score: 296
Period size: 60 Copynumber: 2.5 Consensus size: 60
75453176 TGTCTAGGCC
75453186 ATGATTCATGAATTTCTTACATACTAAGCAAGAGTTTTTTTGTTTGAATATGGAGATAAT
1 ATGATTCATGAATTTCTTACATACTAAGCAAGAGTTTTTTTGTTTGAATATGGAGATAAT
75453246 ATGATTCATGAATTTCTTACATACTAAGCAAGAGTTTTTTTGTTTGAATATGGAGATAAT
1 ATGATTCATGAATTTCTTACATACTAAGCAAGAGTTTTTTTGTTTGAATATGGAGATAAT
75453306 ATGATTCATGAATTTCTTACATACTAAG
1 ATGATTCATGAATTTCTTACATACTAAG
75453334 TAAGTTTCAT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 88 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (60 bp):
ATGATTCATGAATTTCTTACATACTAAGCAAGAGTTTTTTTGTTTGAATATGGAGATAAT
Found at i:75458692 original size:10 final size:10
Alignment explanation
Indices: 75458666--75458759 Score: 53
Period size: 10 Copynumber: 10.0 Consensus size: 10
75458656 TTAAGTAAAA
75458666 TTAAATTAA-
1 TTAAATTAAT
*
75458675 TCAAATTAAT
1 TTAAATTAAT
75458685 TTAAATTAAT
1 TTAAATTAAT
*
75458695 TTGATATT--T
1 TT-AAATTAAT
75458704 TTGGAAATTAAT
1 TT--AAATTAAT
**
75458716 TTTGATTAA-
1 TTAAATTAAT
*
75458725 GT-AA--AA-
1 TTAAATTAAT
75458731 TTAAATTAA-
1 TTAAATTAAT
75458740 TTAAATTAAT
1 TTAAATTAAT
75458750 TTAAATTAAT
1 TTAAATTAAT
75458760 ATGATAGTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
6 3 0.04
7 2 0.03
8 1 0.01
9 23 0.34
10 31 0.46
11 4 0.06
12 3 0.04
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.47
Consensus pattern (10 bp):
TTAAATTAAT
Found at i:75458713 original size:65 final size:65
Alignment explanation
Indices: 75458634--75458848 Score: 360
Period size: 65 Copynumber: 3.3 Consensus size: 65
75458624 AATCTAAGTG
*
75458634 ATTTTTGGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATTTGA
1 ATTTTT-GGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGA
75458699 T
65 T
*
75458700 ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATTAAATTAATTTAAATTAATATGAT
1 ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGAT
* *
75458765 AGTTTT-GAAATTTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGG
1 ATTTTTGGAAA-TTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGA
75458829 T
65 T
*
75458830 ATTTTTAGAAATTAATTTT
1 ATTTTTGGAAATTAATTTT
75458849 TAAGTCAGAC
Statistics
Matches: 141, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
64 4 0.03
65 127 0.90
66 10 0.07
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.47
Consensus pattern (65 bp):
ATTTTTGGAAATTAATTTTGATTAAGTAAAATTAAATTAATCAAATTAATTTAAATTAATATGAT
Found at i:75458743 original size:9 final size:9
Alignment explanation
Indices: 75458729--75458759 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
75458719 GATTAAGTAA
75458729 AATTAAATT
1 AATTAAATT
75458738 AATTAAATT
1 AATTAAATT
75458747 AATTTAAATT
1 AA-TTAAATT
75458757 AAT
1 AAT
75458760 ATGATAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTAAATT
Found at i:75464745 original size:35 final size:35
Alignment explanation
Indices: 75464699--75464768 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
75464689 TTATCTCATA
75464699 ATACGGGACTCATCTATTTCTCTTGAAAACAAACT
1 ATACGGGACTCATCTATTTCTCTTGAAAACAAACT
75464734 ATACGGGACTCATCTATTTCTCTTGAAAACAAACT
1 ATACGGGACTCATCTATTTCTCTTGAAAACAAACT
75464769 CATTAAGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (35 bp):
ATACGGGACTCATCTATTTCTCTTGAAAACAAACT
Found at i:75486342 original size:14 final size:15
Alignment explanation
Indices: 75486323--75486351 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75486313 TGTCGAAACT
75486323 AAAAAGAAAA-AAAG
1 AAAAAGAAAAGAAAG
75486337 AAAAAGAAAAGAAAG
1 AAAAAGAAAAGAAAG
75486352 GAAGCTAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAGAAAG
Found at i:75488340 original size:27 final size:27
Alignment explanation
Indices: 75488310--75488487 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
75488300 ATATCGAGTC
* * * *
75488310 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
75488337 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75488364 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
75488392 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
75488419 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
75488446 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75488473 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75488488 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:75488449 original size:82 final size:81
Alignment explanation
Indices: 75488331--75488486 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
75488321 TGCTATATAA
*
75488331 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
75488396 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75488413 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75488477 CACTTAGTGC
65 CACTTAGTGC
75488487 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75506016 original size:19 final size:19
Alignment explanation
Indices: 75505992--75506042 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
75505982 ACTATCATGA
75505992 AGAGAACAAAGACGTCCAT
1 AGAGAACAAAGACGTCCAT
*
75506011 AGAGAACAAAGATGTCCAT
1 AGAGAACAAAGACGTCCAT
*
75506030 -GAAGAACGAAGAC
1 AG-AGAACAAAGAC
75506043 TACGGATAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 27 0.96
ACGTcount: A:0.49, C:0.18, G:0.24, T:0.10
Consensus pattern (19 bp):
AGAGAACAAAGACGTCCAT
Found at i:75508756 original size:6 final size:6
Alignment explanation
Indices: 75508738--75508776 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
75508728 TCCTCTCTTT
* * *
75508738 TTTTTA TTCTTA TTTTTA TTTTTC TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
75508777 CAATTTTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:75508782 original size:24 final size:23
Alignment explanation
Indices: 75508737--75508796 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
75508727 CTCCTCTCTT
**
75508737 TTTTTTATTCTTATTTTTATTTT-
1 TTTTTTATT-TTATTTCAATTTTA
75508760 TCTTTTTATTTTCATTTCAATTTTA
1 T-TTTTTATTTT-ATTTCAATTTTA
75508785 TTATTTTATTTT
1 TT-TTTTATTTT
75508797 GAAAGACATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 3 0.10
24 18 0.58
25 10 0.32
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTTTATTTTATTTCAATTTTA
Found at i:75533057 original size:27 final size:27
Alignment explanation
Indices: 75533000--75533059 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
75532990 ATACATATCA
*
75533000 TAGGGGCATATAAGCCATTTTACCATG
1 TAGGGGCATATAAGCCATTTTACAATG
* * *
75533027 TAGGGGCATTTCAGTCATTTTATCAAT-
1 TAGGGGCATATAAGCCATTTTA-CAATG
75533054 TAGGGG
1 TAGGGG
75533060 GTCTAAGTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (27 bp):
TAGGGGCATATAAGCCATTTTACAATG
Found at i:75537149 original size:32 final size:32
Alignment explanation
Indices: 75537113--75537184 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
75537103 ATGGCATTAT
* *
75537113 AACTGATATTGGTTTTGATATGGGCTAGGCCC
1 AACTGATATTGATTTTGAGATGGGCTAGGCCC
75537145 AACTGATATTGATTTTGAGATGGGCTAGGCCC
1 AACTGATATTGATTTTGAGATGGGCTAGGCCC
*
75537177 AATTGATA
1 AACTGATA
75537185 CTATGATGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (32 bp):
AACTGATATTGATTTTGAGATGGGCTAGGCCC
Found at i:75538910 original size:6 final size:6
Alignment explanation
Indices: 75538880--75539072 Score: 128
Period size: 6 Copynumber: 31.3 Consensus size: 6
75538870 AAGAAACATT
* * * *
75538880 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAAA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
75538927 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * * *
75538978 ATCAGT ATCAGGTA A-CAGA ATTAGA ATCAGA ACCAGA ATCAAA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
75539029 A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
75539073 GTGAATGCAA
Statistics
Matches: 145, Mismatches: 25, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
5 10 0.07
6 115 0.79
7 13 0.09
8 7 0.05
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:75538936 original size:19 final size:19
Alignment explanation
Indices: 75538912--75539044 Score: 103
Period size: 19 Copynumber: 6.8 Consensus size: 19
75538902 GAATTAGAAT
*
75538912 CAGAATCAAAATCAGGTGA
1 CAGAATCAAAATCAGGTAA
75538931 CAGAATCAAAATCA-G-AA
1 CAGAATCAAAATCAGGTAA
* *
75538948 TCAGAATCAGAATTAGGTAA
1 -CAGAATCAAAATCAGGTAA
75538968 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATC--AA--A--ATCAGGTAA
* *
75538993 CAGAATTAGAATCA-G-AA
1 CAGAATCAAAATCAGGTAA
*
75539010 CCAGAATCAAAATTAGGTAA
1 -CAGAATCAAAATCAGGTAA
*
75539030 CAGAATCAGAATCAG
1 CAGAATCAAAATCAG
75539045 TATCAGGTAA
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
17 3 0.03
18 25 0.28
19 40 0.44
20 4 0.04
21 2 0.02
23 2 0.02
25 14 0.16
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (19 bp):
CAGAATCAAAATCAGGTAA
Found at i:75538971 original size:37 final size:37
Alignment explanation
Indices: 75538907--75539001 Score: 120
Period size: 37 Copynumber: 2.5 Consensus size: 37
75538897 AATGAGAATT
* * *
75538907 AGAATCAGAATCAAAATCAGGTGACAGAATCAAAATC
1 AGAATCAGAATCAGAATTAGGTAACAGAATCAAAATC
*
75538944 AGAATCAGAATCAGAATTAGGTAACAGAATCAGAATC
1 AGAATCAGAATCAGAATTAGGTAACAGAATCAAAATC
*
75538981 AGTATCAGGTAA-CAGAATTAG
1 AGAATCA-G-AATCAGAATTAG
75539002 AATCAGAACC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
37 39 0.76
38 10 0.20
39 2 0.04
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATTAGGTAACAGAATCAAAATC
Found at i:75538989 original size:62 final size:62
Alignment explanation
Indices: 75538907--75539072 Score: 269
Period size: 62 Copynumber: 2.7 Consensus size: 62
75538897 AATGAGAATT
** * * *
75538907 AGAATCAGAATCAAAATCAGGTGACAGAATCAAAATCAGAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAAC
* *
75538969 AGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAACCAGAATCAAAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAAC
75539031 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
75539073 GTGAATGCAA
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAAC
Found at i:75539009 original size:37 final size:37
Alignment explanation
Indices: 75538968--75539050 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
75538958 AATTAGGTAA
** *
75538968 CAGAATCAGAATCAGTATCAGGTAACAGAATTAGAAT
1 CAGAATCAGAATCAAAATCAGGTAACAGAATCAGAAT
* *
75539005 CAGAACCAGAATCAAAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAAAATCAGGTAACAGAATCAGAAT
*
75539042 CAGTATCAG
1 CAGAATCAG
75539051 GTAACAGAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (37 bp):
CAGAATCAGAATCAAAATCAGGTAACAGAATCAGAAT
Found at i:75539069 original size:25 final size:25
Alignment explanation
Indices: 75538907--75539072 Score: 123
Period size: 25 Copynumber: 6.7 Consensus size: 25
75538897 AATGAGAATT
* *
75538907 AGAATCAGAATCAAAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
75538932 AGAATCAAAATCAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCAGGTAA-C
*
75538956 AGAATTAGGTAA-CAGAATCA-G-AATC
1 AGAATCA-G-AATCAGAATCAGGTAA-C
* *
75538981 AGTATCAGGTAA-CAGAATTA-G-AATC
1 AGAATCA-G-AATCAGAATCAGGTAA-C
* * *
75539006 AGAACCAGAATCAAAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
75539031 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
75539056 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
75539073 GTGAATGCAA
Statistics
Matches: 119, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
23 3 0.03
24 16 0.13
25 96 0.81
26 4 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:75539517 original size:27 final size:27
Alignment explanation
Indices: 75539487--75539792 Score: 271
Period size: 27 Copynumber: 11.3 Consensus size: 27
75539477 GGGGTAAAAT
* *
75539487 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
75539514 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * *
75539541 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
75539568 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *** * * *
75539595 GGTAATTCTATTTTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * * *
75539622 AGTAATTCTACTCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
**
75539649 AAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
75539676 GGTAATTCTACTCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
75539703 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
75539730 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
75539757 GG-CATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
75539784 GGTAATTTT
1 GGTAATTTT
75539793 GTAAATCGAG
Statistics
Matches: 231, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
26 13 0.06
27 206 0.89
28 12 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:75539619 original size:81 final size:81
Alignment explanation
Indices: 75539491--75539782 Score: 415
Period size: 81 Copynumber: 3.6 Consensus size: 81
75539481 TAAAATGGTA
* * * * *
75539491 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACTTTACAGGGGTATTTTAGTAATTCTACCCT
*
75539555 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCAGT
* * *
75539571 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTATTTTATAGGGGTATTTTAGTAATTCTACTCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACTTTACAGGGGTATTTTAGTAATTCTACCCT
* *
75539636 ACAGGGGTATTTTAAT
66 ACAGGGGTATTTCAGT
* *
75539652 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTTAGTAATTTTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACTTTACAGGGGTATTTTAGTAATTCTACCCT
75539717 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* * ** *
75539733 ATTTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTACAAGGGTATTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACTTTACAGGGGTATTT
75539783 CGGTAATTTT
Statistics
Matches: 189, Mismatches: 22, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
80 4 0.02
81 185 0.98
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACTTTACAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:75539804 original size:27 final size:27
Alignment explanation
Indices: 75539774--75540168 Score: 331
Period size: 27 Copynumber: 14.7 Consensus size: 27
75539764 CTACCCTACA
* ** *
75539774 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCT
*** * ** *
75539801 AGGGTAAAATAGTAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTACAAATCT
* * *
75539828 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCT
*** ** *
75539855 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCT
* *
75539882 AGGGTATTTTAGTAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCT
75539908 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCT
*
75539935 AGGGGTATTTTGATAATTTTACAAAT-T
1 A-GGGTATTTTGGTAATTTTACAAATCT
75539962 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCT
* * *
75539989 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCT
*
75540017 AGGGTATTTTAGTAATTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTACAAATCT
** * *
75540043 AGGGGTA-TTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCT
* *
75540070 AGGGTATTTTAGTAATTTTACAAA-CC
1 AGGGTATTTTGGTAATTTTACAAATCT
* *
75540096 AGGGGTATTTTGGTGATTTTATAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCT
*
75540123 AAGGGTATTTTAGTAATTTTACAAA-CT
1 -AGGGTATTTTGGTAATTTTACAAATCT
75540150 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTTGGTAATTT
75540169 GGTAAACTAA
Statistics
Matches: 308, Mismatches: 49, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
26 26 0.08
27 279 0.91
28 3 0.01
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCT
Found at i:75540046 original size:81 final size:81
Alignment explanation
Indices: 75539829--75540168 Score: 391
Period size: 81 Copynumber: 4.2 Consensus size: 81
75539819 TGTAAATCAA
* ** * * * ** *
75539829 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTTA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAG-GGGTATTTTA
*
75539893 GTAATTTCACAAA-TCAG
65 GTAATTTTACAAACT-AG
* * * *
75539910 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-GATAATTTTACAAATTAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAACTAGGGGTATTTTA
75539974 GTAATTTTACAAACTAG
65 GTAATTTTACAAACTAG
* *
75539991 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTA-TTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAG
** * *
75540055 TAATTTTGTAAACCAA
66 TAATTTTACAAACTAG
* * * * * *
75540071 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAG
75540136 TAATTTTACAAACTAG
66 TAATTTTACAAACTAG
75540152 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
75540169 GGTAAACTAA
Statistics
Matches: 220, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
80 69 0.31
81 146 0.66
82 5 0.02
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAG
TAATTTTACAAACTAG
Found at i:75540177 original size:27 final size:27
Alignment explanation
Indices: 75539883--75540168 Score: 387
Period size: 27 Copynumber: 10.6 Consensus size: 27
75539873 TACAGGTCGA
* *
75539883 GGGTATTTTAGTAATTTCACAAA-TCAG
1 GGGTATTTTGGTAATTTTACAAACT-AG
75539910 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
75539937 GGGTATTTTGATAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
75539964 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
75539991 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
75540018 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
75540045 GGGTA-TTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
75540071 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
75540098 GGGTATTTTGGTGATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
75540125 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
75540152 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
75540169 GGTAAACTAA
Statistics
Matches: 225, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 21 0.09
27 203 0.90
28 1 0.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:75540184 original size:107 final size:107
Alignment explanation
Indices: 75539883--75540184 Score: 417
Period size: 107 Copynumber: 2.8 Consensus size: 107
75539873 TACAGGTCGA
* * * * * * *
75539883 GGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
** * * * *
75539948 TAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAACTAG
66 TAATTTTGTAAACTA-AGGTATTTTAGTAATTTTACAAACCAG
75539991 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTA-TTTGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
*
75540055 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
66 TAATTTTGTAAACTAA-GGTATTTTAGTAATTTTACAAACCAG
* *
75540098 GGGTATTTTGGTGATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
* *
75540163 TAATTTGGTAAACTAAAGTATT
66 TAATTTTGTAAACTAAGGTATT
75540185 CTAAACAGGG
Statistics
Matches: 173, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
107 101 0.58
108 72 0.42
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.41
Consensus pattern (107 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
TAATTTTGTAAACTAAGGTATTTTAGTAATTTTACAAACCAG
Found at i:75543358 original size:20 final size:21
Alignment explanation
Indices: 75543333--75543374 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
75543323 TTCTCCTAAC
75543333 CAATTGATTCACTTTCC-TTT
1 CAATTGATTCACTTTCCATTT
75543353 CAATTGATTCACTTTCCATTT
1 CAATTGATTCACTTTCCATTT
75543374 C
1 C
75543375 TTAACCTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.21, C:0.26, G:0.05, T:0.48
Consensus pattern (21 bp):
CAATTGATTCACTTTCCATTT
Found at i:75544566 original size:31 final size:32
Alignment explanation
Indices: 75544515--75544584 Score: 115
Period size: 31 Copynumber: 2.2 Consensus size: 32
75544505 AATTGAAATA
* *
75544515 GGCTAGGCCTAACTGATATTGGTTCTGATATG
1 GGCTAGGCCTAACTGATATTGATTCTGAGATG
75544547 GGCTAGGCCTAA-TGATATTGATTCTGAGATG
1 GGCTAGGCCTAACTGATATTGATTCTGAGATG
75544578 GGCTAGG
1 GGCTAGG
75544585 TCCAATTGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 24 0.67
32 12 0.33
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.31
Consensus pattern (32 bp):
GGCTAGGCCTAACTGATATTGATTCTGAGATG
Found at i:75562283 original size:24 final size:24
Alignment explanation
Indices: 75562251--75562362 Score: 109
Period size: 24 Copynumber: 4.6 Consensus size: 24
75562241 TCTTACTCAT
*
75562251 TCGCACACATAGTGCCACGT-TTCC
1 TCGCACACATAGTGCCACGTAAT-C
* *
75562275 TCGCACACATAGTGCTATGTAATC
1 TCGCACACATAGTGCCACGTAATC
* *
75562299 TCGCACACATAGTGCCACGTAGTTT
1 TCGCACACATAGTGCCACGTA-ATC
* * * *
75562324 TTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCACGTAATC
*
75562348 TCTCACACATAGTGC
1 TCGCACACATAGTGC
75562363 TGAAATTTCT
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
24 51 0.72
25 20 0.28
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAATC
Found at i:75562355 original size:49 final size:48
Alignment explanation
Indices: 75562251--75562362 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 48
75562241 TCTTACTCAT
* ** *
75562251 TCGCACACATAGTGCCACGTTTCCTCGCACACATAGTGCTATGTAATC
1 TCGCACACATAGTGCCACGTTTCCTCGCACACATAGTGCCACATAACC
* * *
75562299 TCGCACACATAGTGCCACGTAGTT-TTTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCACGT--TTCCTCGCACACATAGTGCCACATAACC
*
75562348 TCTCACACATAGTGC
1 TCGCACACATAGTGC
75562363 TGAAATTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
48 20 0.37
49 32 0.59
50 2 0.04
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
TCGCACACATAGTGCCACGTTTCCTCGCACACATAGTGCCACATAACC
Found at i:75565065 original size:93 final size:93
Alignment explanation
Indices: 75564906--75565076 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
75564896 GCCCATAAGT
* *
75564906 GAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
75564971 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
75564999 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
75565064 CGAGTTCGGATGC
66 CGAGCTCGGATGC
75565077 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:75565073 original size:46 final size:46
Alignment explanation
Indices: 75564898--75565073 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
75564888 TGTAACCCGC
* *
75564898 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
75564944 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* * *
75564994 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
*
75565037 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
75565074 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 63 0.57
47 28 0.25
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:75567172 original size:21 final size:21
Alignment explanation
Indices: 75567148--75567199 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
75567138 ACCCCTTGTG
75567148 CTTGGTTGCAACATCGTATGC
1 CTTGGTTGCAACATCGTATGC
75567169 CTTGGTTGCAACATCGTATGC
1 CTTGGTTGCAACATCGTATGC
75567190 CTAT-GTTGCA
1 CT-TGGTTGCA
75567200 CCCAAACCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (21 bp):
CTTGGTTGCAACATCGTATGC
Found at i:75567569 original size:14 final size:14
Alignment explanation
Indices: 75567529--75567570 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
75567519 AATCCATTTG
75567529 TATCTCATTTCTTT-
1 TATCTC-TTTCTTTA
75567543 TAT-TCTATTCTTTA
1 TATCTCT-TTCTTTA
75567557 TATCTCTTTCTTTA
1 TATCTCTTTCTTTA
75567571 ACATTGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.04
13 8 0.32
14 13 0.52
15 3 0.12
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.64
Consensus pattern (14 bp):
TATCTCTTTCTTTA
Found at i:75571472 original size:20 final size:20
Alignment explanation
Indices: 75571433--75571472 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75571423 AAACTTCTTC
* *
75571433 ACTTACTCACTTATTTAAAT
1 ACTTACTCACTTAATCAAAT
*
75571453 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
75571473 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:75571847 original size:55 final size:53
Alignment explanation
Indices: 75571722--75571854 Score: 169
Period size: 53 Copynumber: 2.5 Consensus size: 53
75571712 CTTACCATTT
*
75571722 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCATTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCATTATGAACTCACCAATG
* * * * * *
75571775 CCAAGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCATTAT-G-AACTCACCAATG
75571830 CCATGTCTTGACATGGTCTTACATG
1 CCATGTCTTGACATGGTCTTACATG
75571855 ATTTCCTTGC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.03
53 32 0.48
54 1 0.01
55 32 0.48
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCATTATGAACTCACCAATG
Found at i:75571865 original size:55 final size:52
Alignment explanation
Indices: 75571722--75571918 Score: 166
Period size: 55 Copynumber: 3.6 Consensus size: 52
75571712 CTTACCATTT
*
75571722 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCATTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATGAACTCACCAATG
* * * * * *
75571775 CCAAGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACAT-GTATCC-TTGCCTTAT-G-AACTCACCAATG
* * *
75571830 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTT
1 CCATGTCTTGACATGGTCTTACATG-TATCCTTGCCTTATG-AA-CTCACCAA-TG
**
75571885 CCATACCTT-AGCATGGTCTTACATGGTATCCTTG
1 CCATGTCTTGA-CATGGTCTTACAT-GTATCCTTG
75571919 AACCATAATG
Statistics
Matches: 117, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
52 2 0.02
53 35 0.30
54 10 0.09
55 67 0.57
56 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (52 bp):
CCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTATGAACTCACCAATG
Found at i:75574098 original size:40 final size:40
Alignment explanation
Indices: 75574035--75574958 Score: 1737
Period size: 40 Copynumber: 23.1 Consensus size: 40
75574025 TGGGATTTAA
* *
75574035 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCACACAAATGCCTTCGGGACTTAGC
75574075 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574115 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574155 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574195 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574235 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574275 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574315 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574355 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574395 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574435 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574475 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574515 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574555 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574595 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574635 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574675 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574715 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574755 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574795 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
75574835 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
*
75574875 CCGGATATAGTAACTCACACAAACGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
* * **
75574915 CC-GAAACTAGTCACT-AGCGTAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCA-CACAAATGCCTTCGGGACTTAGC
75574955 CCGG
1 CCGG
75574959 TTATCATCCA
Statistics
Matches: 872, Mismatches: 8, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
39 5 0.01
40 866 0.99
41 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
Found at i:75589017 original size:34 final size:34
Alignment explanation
Indices: 75588968--75589033 Score: 116
Period size: 34 Copynumber: 1.9 Consensus size: 34
75588958 GAATGATAGT
75588968 AGGAATGAGAGGTATAAACTCCTCGAACCACCGC
1 AGGAATGAGAGGTATAAACTCCTCGAACCACCGC
75589002 AGGAATGAG-GCGTATAAACTCCTCGAACCACC
1 AGGAATGAGAG-GTATAAACTCCTCGAACCACC
75589034 ATGATCATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 1 0.03
34 30 0.97
ACGTcount: A:0.35, C:0.27, G:0.23, T:0.15
Consensus pattern (34 bp):
AGGAATGAGAGGTATAAACTCCTCGAACCACCGC
Found at i:75612252 original size:40 final size:39
Alignment explanation
Indices: 75612208--75612358 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 39
75612198 GGATATAACT
* * *
75612208 ACTCGCTCAAATGCCTTCCGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT--AGTA
*
75612248 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTAGTA
*
75612288 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
* * *
75612327 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
75612359 TTATCATCCA
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 34 0.34
40 64 0.64
42 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
Found at i:75612920 original size:329 final size:328
Alignment explanation
Indices: 75612293--75612951 Score: 1183
Period size: 329 Copynumber: 2.0 Consensus size: 328
75612283 TAGTAACTCG
* * * *
75612293 CACAAATGCCTTCGGGACTTAGCCCGGATTAGTCACTAGCGCAGATGCCTTCGGGACTTAGCCCG
1 CACAAACGCCTTCGGGACTTAGCCCGAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCG
* * *
75612358 GTTATCATCCAAATATTCATACACATATCAATAAATCATGACACATCTATATTTCATTTTCATAA
66 GTTATCATCCAAACATTCATACACATATCAACAAATCATGACACATCTATATTCCATTTTCATAA
** *
75612423 TTGGAGTTCAAACACACGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGCCACATACAAAC
131 TCAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGCCACATACAAAC
75612488 AGCATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCGTCACATGTATAG
196 AGCATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCGTCACATGTATAG
75612553 ACAAATTAACTCAACATAAAATTCAAGTAGAATCATCATATCACCGTATATTTGTTACGCTCATA
261 ACAAATTAACTCAACATAAAATTCAAGTAGAATCATCATATCACCGTATATTTGTTACGCTCATA
75612618 CGT
326 CGT
*
75612621 CACAAACGCCTTCGGGACTTAGCCCGAAACTAGTCACTAGCGTAAATGCCTTCGGGACTTAGCCC
1 CACAAACGCCTTCGGGACTTAGCCCG-AACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
* *
75612686 GGTTATCATCCAAACATTCATGCACATATCAACAAATCATGACACATTTATATTCCATTTTCATA
65 GGTTATCATCCAAACATTCATACACATATCAACAAATCATGACACATCTATATTCCATTTTCATA
75612751 ATCAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGCCACATACAAA
130 ATCAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGCCACATACAAA
*
75612816 CAGCATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATGCGGCTACCCGTCACATGTATA
195 CAGCATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCGTCACATGTATA
75612881 GACAAATTAACTCAACATAAAATTCAAGTAGAATCATCATATCACCGTATATTTGTTACGCTCAT
260 GACAAATTAACTCAACATAAAATTCAAGTAGAATCATCATATCACCGTATATTTGTTACGCTCAT
75612946 ACGT
325 ACGT
75612950 CA
1 CA
75612952 TGACTTAATC
Statistics
Matches: 316, Mismatches: 14, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
328 25 0.08
329 291 0.92
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (328 bp):
CACAAACGCCTTCGGGACTTAGCCCGAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCG
GTTATCATCCAAACATTCATACACATATCAACAAATCATGACACATCTATATTCCATTTTCATAA
TCAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGCCACATACAAAC
AGCATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCGTCACATGTATAG
ACAAATTAACTCAACATAAAATTCAAGTAGAATCATCATATCACCGTATATTTGTTACGCTCATA
CGT
Found at i:75613116 original size:62 final size:62
Alignment explanation
Indices: 75612995--75613117 Score: 203
Period size: 62 Copynumber: 2.0 Consensus size: 62
75612985 CTCGAAAACT
*
75612995 TACCTCGGATGTTGTCGAACGATTTCGATGGCTATTCGACCACTTTTTCTTCCTTTTTATCG
1 TACCTCGGATGTTGTCGAACGATTTCGATGGCTATTCGACCACTTTTTCTTCCTCTTTATCG
* *
75613057 TACCTCGGGTGTTGTCGAACGGTTTCGATGGCTATTCGACCACTTTTTCCTTCC-CTTTATC
1 TACCTCGGATGTTGTCGAACGATTTCGATGGCTATTCGACCACTTTTT-CTTCCTCTTTATC
75613118 AGATTTAGAT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 52 0.91
63 5 0.09
ACGTcount: A:0.15, C:0.26, G:0.19, T:0.41
Consensus pattern (62 bp):
TACCTCGGATGTTGTCGAACGATTTCGATGGCTATTCGACCACTTTTTCTTCCTCTTTATCG
Found at i:75619095 original size:29 final size:29
Alignment explanation
Indices: 75619025--75619136 Score: 102
Period size: 29 Copynumber: 3.9 Consensus size: 29
75619015 ACCCCTACAT
*
75619025 ACATGCATATGGCCCACTAGGCCCAA-TC
1 ACATTCATATGGCCCACTAGGCCCAATTC
** * * *
75619053 TTATTCAAATGGCCCTTCT-GGCCCAGTTC
1 ACATTCATATGGCCC-ACTAGGCCCAATTC
* *
75619082 ATATTCTTATGGCCCACTAGGCCCAATTC
1 ACATTCATATGGCCCACTAGGCCCAATTC
* * *
75619111 ACATTCATATGGTCCATTATGCCCAA
1 ACATTCATATGGCCCACTAGGCCCAA
75619137 ATCATAATTC
Statistics
Matches: 65, Mismatches: 16, Indels: 5
0.76 0.19 0.06
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAATTC
Done.