Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 227 of 276
Found at i:75633302 original size:19 final size:19
Alignment explanation
Indices: 75633260--75633300 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
75633250 AGAAAAAGTG
75633260 AAAAGTAAGAACGAGAAGA
1 AAAAGTAAGAACGAGAAGA
75633279 AAAAGTACAGAAC-A-AAGA
1 AAAAGTA-AGAACGAGAAGA
75633297 AAAA
1 AAAA
75633301 AGCATTGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.68, C:0.07, G:0.20, T:0.05
Consensus pattern (19 bp):
AAAAGTAAGAACGAGAAGA
Found at i:75636211 original size:16 final size:15
Alignment explanation
Indices: 75636186--75636271 Score: 56
Period size: 16 Copynumber: 5.7 Consensus size: 15
75636176 AAAAAAAGTA
75636186 ATAA-AAATAATAAT
1 ATAATAAATAATAAT
*
75636200 CATAATAAATAACAAAT
1 -ATAATAAATAA-TAAT
* * *
75636217 ATAATGAAGAATAAC
1 ATAATAAATAATAAT
75636232 AGTAAT-AATAATGAAT
1 A-TAATAAATAAT-AAT
75636248 ACTAATAAAT-A-AAT
1 A-TAATAAATAATAAT
75636262 A-AATAAATAA
1 ATAATAAATAA
75636272 AATTACTAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
12 7 0.12
13 1 0.02
14 4 0.07
15 12 0.21
16 27 0.47
17 6 0.11
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.26
Consensus pattern (15 bp):
ATAATAAATAATAAT
Found at i:75636231 original size:19 final size:21
Alignment explanation
Indices: 75636207--75636246 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
75636197 AATCATAATA
75636207 AATAACA-AAT-ATAATGAAG
1 AATAACAGAATAATAATGAAG
75636226 AATAACAGTAATAATAATGAA
1 AATAACAG-AATAATAATGAA
75636247 TACTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
21 3 0.17
22 8 0.44
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.23
Consensus pattern (21 bp):
AATAACAGAATAATAATGAAG
Found at i:75638046 original size:27 final size:27
Alignment explanation
Indices: 75638015--75638273 Score: 331
Period size: 27 Copynumber: 9.6 Consensus size: 27
75638005 TTAGTTTACC
*
75638015 AAATTACCAAAAAACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
75638042 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
75638069 AAATTACC-AAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
75638095 AAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75638122 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75638149 AAATTACCAAAACACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75638176 AAATTACCAAAATACCCATGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75638203 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75638230 AAATTACCAAAATACCTCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
75638257 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
75638274 TCGACCTTTA
Statistics
Matches: 199, Mismatches: 32, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 22 0.11
27 177 0.89
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75638166 original size:54 final size:54
Alignment explanation
Indices: 75638005--75638274 Score: 371
Period size: 54 Copynumber: 5.0 Consensus size: 54
75637995 TTAGAATACT
** *
75638005 TTAGTTTACCAAATTACCAAAAAACCCCTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * *
75638059 TTGGTTTACAAAATTACC-AAATACCCCTGGTTTGTAAAATTACTAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * *
75638112 TTAGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAACACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* *
75638166 TTGGTTTATAAAATTACCAAAATACCCATGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * * * **
75638220 CTAGTTTGTAAAATTACCAAAATACCTCTGATTTGTGAAATTACTGAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
75638274 T
1 T
75638275 CGACCTTTAA
Statistics
Matches: 190, Mismatches: 25, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
53 48 0.25
54 142 0.75
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
Found at i:75638286 original size:54 final size:55
Alignment explanation
Indices: 75638015--75638344 Score: 352
Period size: 54 Copynumber: 6.1 Consensus size: 55
75638005 TTAGTTTACC
* * *
75638015 AAATTACCAAAAAACCCCTGGTTTGTAAAATTACCAAAATACCCTTG-GTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTTATA
* *
75638069 AAATTACC-AAATACCCCTGGTTTGTAAAATTACTAAAATACCCT-TAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTTATA
* * * *
75638122 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAACACCCTTG-GTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTTATA
* * *
75638176 AAATTACCAAAATACCCATGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTTATA
* * * ** **
75638230 AAATTACCAAAATACCTCTGATTTGTGAAATTACTGAAATACCCTCGACCTT-TA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTTATA
** * * *** *
75638284 AAATTACTGAGATACCTC-AACTTGTAAAATTACCAAAGTACCCTCGA-TTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTTATA
*
75638337 GAATTACC
1 AAATTACC
75638345 GTTTTACCCT
Statistics
Matches: 233, Mismatches: 37, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.01
53 78 0.33
54 149 0.64
55 4 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (55 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTTATA
Found at i:75638286 original size:81 final size:80
Alignment explanation
Indices: 75638015--75638343 Score: 308
Period size: 81 Copynumber: 4.1 Consensus size: 80
75638005 TTAGTTTACC
* * * * * **
75638015 AAATTACCAAAAAACCCCTG-GTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACC-A
1 AAATTACTAAAATA-CCCTGAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
*
75638078 AATACCCCTGGTTTGTA
65 AATA-CCCTGATTTGTA
* *
75638095 AAATTACTAAAATACCCTTAGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACTAAAATACCCTGAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
* * *
75638160 ACACCCTTGGTTTATA
66 ATACCC-TGATTTGTA
* *
75638176 AAATTACCAAAATACCCATG-GTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAATTACTAAAATACCC-TGAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
*
75638240 AATACCTCTGATTTGTG
65 AATACC-CTGATTTGTA
* ** ** * * **
75638257 AAATTACTGAAATACCCTCGACCTT-TAAAATTACTGAGATACCTC-AACTTGTAAAATTACCAA
1 AAATTACTAAAATACCCT-GAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
* *
75638320 AGTACCCTCGATTTATA
65 AATACCCT-GATTTGTA
*
75638337 GAATTAC
1 AAATTAC
75638344 CGTTTTACCC
Statistics
Matches: 208, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
79 6 0.03
80 85 0.41
81 113 0.54
82 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
AAATTACTAAAATACCCTGAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCTGATTTGTA
Found at i:75638325 original size:26 final size:27
Alignment explanation
Indices: 75638037--75638325 Score: 135
Period size: 27 Copynumber: 10.8 Consensus size: 27
75638027 AACCCCTGGT
***
75638037 TTGTAAAATTACCAAAATACC-CTTGG
1 TTGTAAAATTACCAAAATACCTCTAAC
* ***
75638063 TT-TACAAAATTACC-AAATACCCCTGGT
1 TTGT--AAAATTACCAAAATACCTCTAAC
* **
75638090 TTGTAAAATTACTAAAATACC-CTTAGT
1 TTGTAAAATTACCAAAATACCTC-TAAC
* * * **
75638117 TTATAAAATCACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCTCTAAC
* ***
75638144 TTGTAAAATTACCAAAACACC-CTTGGT
1 TTGTAAAATTACCAAAATACCTC-TAAC
* ***
75638171 TTATAAAATTACCAAAATACC-CATGGT
1 TTGTAAAATTACCAAAATACCTC-TAAC
* **
75638198 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCTCTAAC
* *
75638225 TTGTAAAATTACCAAAATACCTCTGAT
1 TTGTAAAATTACCAAAATACCTCTAAC
* ** * *
75638252 TTGTGAAATTACTGAAATACCCTCGACC
1 TTGTAAAATTACCAAAATA-CCTCTAAC
** *
75638280 TT-TAAAATTACTGAGATACCTC-AAC
1 TTGTAAAATTACCAAAATACCTCTAAC
*
75638305 TTGTAAAATTACCAAAGTACC
1 TTGTAAAATTACCAAAATACC
75638326 CTCGATTTAT
Statistics
Matches: 219, Mismatches: 33, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
25 5 0.02
26 37 0.17
27 168 0.77
28 9 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCTCTAAC
Found at i:75638388 original size:54 final size:54
Alignment explanation
Indices: 75638322--75638650 Score: 426
Period size: 54 Copynumber: 6.1 Consensus size: 54
75638312 ATTACCAAAG
* * *
75638322 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
** ** * * *
75638376 TACCCTTAATTTACAGAATTATTGTTTTACCCTCAATTTAAAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
* * *
75638430 TACTCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
* * * *
75638484 TACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
* * * *
75638538 TATCCTCGATTTACAGAATTACCATTTTACCCTCAATTTA-AAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAA-AATTACCATTT
* * *
75638592 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
75638646 TACCC
1 TACCC
75638651 CTAGGGTGTT
Statistics
Matches: 242, Mismatches: 31, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
53 2 0.01
54 238 0.98
55 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
Found at i:75638423 original size:81 final size:81
Alignment explanation
Indices: 75638322--75638650 Score: 415
Period size: 81 Copynumber: 4.1 Consensus size: 81
75638312 ATTACCAAAG
* * * * * **
75638322 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTAATT
1 TACCCTCAATTTAAAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* *
75638387 TACAGAATTATTGTTT
66 TACAGAATTACTATTT
* * **
75638403 TACCCTCAATTTAAAAAATTATCATTTTACTCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCAATTTAAAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
75638468 TACAAAATTACTATTT
66 TACAGAATTACTATTT
* ** * * *
75638484 TACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTATCCTCGATT
1 TACCCTCAATTTAAAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
75638549 TACAGAATTACCATTT
66 TACAGAATTACTATTT
* * *
75638565 TACCCTCAATTTAAAGAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCAATTTAAAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* * *
75638630 TATAAAATTACCATTT
66 TACAGAATTACTATTT
75638646 TACCC
1 TACCC
75638651 CTAGGGTGTT
Statistics
Matches: 217, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 217 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (81 bp):
TACCCTCAATTTAAAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
TACAGAATTACTATTT
Found at i:75638643 original size:27 final size:27
Alignment explanation
Indices: 75638322--75638650 Score: 372
Period size: 27 Copynumber: 12.2 Consensus size: 27
75638312 ATTACCAAAG
* * *
75638322 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
75638349 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
** * ***
75638376 TACCCTTAATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
75638403 TACCCTCAATTTAAAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * **
75638430 TACTCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
75638457 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* **
75638484 TACCCTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
75638511 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
75638538 TATCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
75638565 TACCCTCAATTTA-AAGAATTACTATTT
1 TACCCTCGATTTACAA-AATTACCATTT
* *
75638592 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
75638619 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
75638646 TACCC
1 TACCC
75638651 CTAGGGTGTT
Statistics
Matches: 265, Mismatches: 35, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 263 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:75638931 original size:27 final size:26
Alignment explanation
Indices: 75638887--75638937 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
75638877 CTCGCTGCAA
*
75638887 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
75638914 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
75638938 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:75639092 original size:31 final size:31
Alignment explanation
Indices: 75639057--75639136 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
75639047 TTGCATTCAC
*
75639057 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
* * *
75639088 ATTCTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
75639119 ATTCTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTG
75639137 ATTCTAGTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTG
Found at i:75639096 original size:6 final size:6
Alignment explanation
Indices: 75639057--75639150 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
75639047 TTGCATTCAC
* * *
75639057 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
75639106 -TCACCTG ATTCTG ATTCTG ATTTTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75639151 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.06
6 57 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75639150 original size:18 final size:18
Alignment explanation
Indices: 75639057--75639150 Score: 77
Period size: 19 Copynumber: 5.1 Consensus size: 18
75639047 TTGCATTCAC
*
75639057 ATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTG
*
75639075 -TTACCTGATACTGATTCTG
1 ATT--CTGATTCTGATTCTG
* *
75639094 ATTCTAATTCTG-TCACCTG
1 ATTCTGATTCTGAT--TCTG
*
75639113 ATTCTGATTCTGATTTTG
1 ATTCTGATTCTGATTCTG
75639131 ATTCTGATTCT-AGTTCTG
1 ATTCTGATTCTGA-TTCTG
75639149 AT
1 AT
75639151 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 27 0.45
20 3 0.05
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTGATTCTG
Found at i:75644665 original size:13 final size:13
Alignment explanation
Indices: 75644647--75644673 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75644637 GCCCGGTAGG
75644647 GACACGCCCGTGT
1 GACACGCCCGTGT
75644660 GACACGCCCGTGT
1 GACACGCCCGTGT
75644673 G
1 G
75644674 CGATTGCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:75659384 original size:23 final size:24
Alignment explanation
Indices: 75659354--75659407 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 24
75659344 AGGAAAGCCT
75659354 CATT-CTATTG-TCATACCCATGC
1 CATTACTATTGCTCATACCCATGC
* *
75659376 CATTACTA-TGCTCATTCTCATGC
1 CATTACTATTGCTCATACCCATGC
*
75659399 TATTACTAT
1 CATTACTAT
75659408 GCTAATGTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.24, C:0.28, G:0.07, T:0.41
Consensus pattern (24 bp):
CATTACTATTGCTCATACCCATGC
Found at i:75660770 original size:6 final size:6
Alignment explanation
Indices: 75660761--75660821 Score: 97
Period size: 6 Copynumber: 10.3 Consensus size: 6
75660751 GATGATGATG
* *
75660761 TTTAAT TTTA-T TTTATC TTTATT TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
75660808 TTTATT TTTATT TT
1 TTTATT TTTATT TT
75660822 ATGTTTTTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
5 5 0.10
6 47 0.90
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:75666571 original size:50 final size:50
Alignment explanation
Indices: 75666504--75666767 Score: 332
Period size: 50 Copynumber: 5.3 Consensus size: 50
75666494 TGATAATATG
*
75666504 ATCGGCACAAAGCCATCGATAATAGATCGGCACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCAT
* *
75666554 ATCAGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCGT
1 ATCGGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCAT
* * * * *
75666604 ATCGGCACAAAGTCATCGATAAAAGATCGGAACATAGCCGTCATTATCAT
1 ATCGGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCAT
* * *
75666654 ATCGGCACAAAGCCATCGATAACAGATCGGCAGAAAGCCATCAATACCAT
1 ATCGGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCAT
* * * * * * * *
75666704 ATCGGTACAAAGCCATCAATAACATACCAGCATGA-AGCCTTCAATAGCAT
1 ATCGGCACAAAGCCATCGATAACAGATCGGCA-CATAGCCATCAATATCAT
*
75666754 ATTGGCACAAAGCC
1 ATCGGCACAAAGCC
75666768 TTCAATAGCA
Statistics
Matches: 186, Mismatches: 27, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
50 184 0.99
51 2 0.01
ACGTcount: A:0.39, C:0.26, G:0.17, T:0.19
Consensus pattern (50 bp):
ATCGGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCAT
Found at i:75666729 original size:25 final size:25
Alignment explanation
Indices: 75666504--75666794 Score: 258
Period size: 25 Copynumber: 11.6 Consensus size: 25
75666494 TGATAATATG
* * *
75666504 ATCGGCACAAAGCCATCGATAATAG
1 ATCGGCACAAAGCCATCAATAACAT
* *
75666529 ATCGGCACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATCAATAACAT
* * *
75666554 ATCAGCACAAAGCCATCGATAACAG
1 ATCGGCACAAAGCCATCAATAACAT
* * *
75666579 ATCGGCACATAGCCATCAATATCGT
1 ATCGGCACAAAGCCATCAATAACAT
* * * *
75666604 ATCGGCACAAAGTCATCGATAAAAG
1 ATCGGCACAAAGCCATCAATAACAT
* * * * *
75666629 ATCGGAACATAGCCGTCATTATCAT
1 ATCGGCACAAAGCCATCAATAACAT
* *
75666654 ATCGGCACAAAGCCATCGATAACAG
1 ATCGGCACAAAGCCATCAATAACAT
* *
75666679 ATCGGCAGAAAGCCATCAATACCAT
1 ATCGGCACAAAGCCATCAATAACAT
*
75666704 ATCGGTACAAAGCCATCAATAACAT
1 ATCGGCACAAAGCCATCAATAACAT
* * ** * *
75666729 ACCAGCATGAAGCCTTCAATAGCAT
1 ATCGGCACAAAGCCATCAATAACAT
* * *
75666754 ATTGGCACAAAGCCTTCAATAGCAT
1 ATCGGCACAAAGCCATCAATAACAT
**
75666779 ATTAGCACAAAGCCAT
1 ATCGGCACAAAGCCAT
75666795 AATCAGAATA
Statistics
Matches: 206, Mismatches: 60, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 206 1.00
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (25 bp):
ATCGGCACAAAGCCATCAATAACAT
Found at i:75667045 original size:41 final size:40
Alignment explanation
Indices: 75666941--75667062 Score: 154
Period size: 41 Copynumber: 3.0 Consensus size: 40
75666931 TAAAAGCCAC
* *
75666941 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCTCAAT
* ** *
75666981 CGATGGATCCATAGTCGTTAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGAT-CTCAAT
* *
75667022 CGGTGGATCCACGGTTGTCAAGCAACCATACGATTCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGA-TCTCAAT
75667063 TTCTTCCTCT
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
40 29 0.43
41 38 0.56
42 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCTCAAT
Found at i:75667356 original size:27 final size:27
Alignment explanation
Indices: 75667322--75667561 Score: 175
Period size: 27 Copynumber: 8.9 Consensus size: 27
75667312 GGTAAATCTA
*
75667322 CAAACCAAGGGTATTTCGATAATTTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
** * *
75667349 CAAGCCAATGGTATTTCTG-TAATTTTT
1 CAAATCAAGGGTATTTC-GATAATTTTG
* * * *
75667376 TAAAGTTAAGGGTATTTTTG-TAATGTTG
1 CAAA-TCAAGGGTA-TTTCGATAATTTTG
* * *
75667404 TAAATCAAGGGTATTTTTG-TAATTTTC
1 CAAATCAAGGGTA-TTTCGATAATTTTG
* *
75667431 CAAATCAAGGGTATTTTGATAATTTTC
1 CAAATCAAGGGTATTTCGATAATTTTG
* * * *
75667458 CAAATTAGGGGTATTTTGATAATTTTA
1 CAAATCAAGGGTATTTCGATAATTTTG
* *
75667485 CAAATCGAGGGTATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
* *
75667512 TAAACCAAGGGTA-TTC-AGTAATTTTG
1 CAAATCAAGGGTATTTCGA-TAATTTTG
* * *
75667538 TAAACCAAGGGTATTTCAATAATT
1 CAAATCAAGGGTATTTCGATAATT
75667562 CTACCCTATA
Statistics
Matches: 178, Mismatches: 28, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
26 29 0.16
27 127 0.71
28 19 0.11
29 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGATAATTTTG
Found at i:75667470 original size:54 final size:54
Alignment explanation
Indices: 75667300--75667561 Score: 206
Period size: 54 Copynumber: 4.9 Consensus size: 54
75667290 TTTCAACCTA
* * * * * **
75667300 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTGCAAGC
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAAT
* * ** * * * *
75667354 CAATGGTATTTCTGTAATTTTTTAAAGTTAAGGGTATTTTTG-TAATGTTGTAAAT
1 CAAGGGTATTTTTGTAATTTTACAAA-TCAAGGGTA-TTTCGATAATTTTGCAAAT
* * *
75667409 CAAGGGTATTTTTGTAATTTTCCAAATCAAGGGTATTTTGATAATTTTCCAAAT
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAAT
* * * * * *
75667463 TAGGGGTA-TTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTGTAAAC
1 CAAGGGTATTTTTG-TAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAAT
** ** * *
75667517 CAAGGGTA-TTCAGTAATTTTGTAAACCAAGGGTATTTCAATAATT
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGATAATT
75667562 CTACCCTATA
Statistics
Matches: 162, Mismatches: 42, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
53 36 0.22
54 84 0.52
55 38 0.23
56 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAAT
Found at i:75667507 original size:81 final size:82
Alignment explanation
Indices: 75667320--75667536 Score: 235
Period size: 81 Copynumber: 2.7 Consensus size: 82
75667310 TTGGTAAATC
* * * * **
75667320 TACAAACCAAGGGTATTTCGATAATTTTGCAAGCCAATGGTATTTCTGTAATTTTTTAAAGTTAA
1 TACAAATCAAGGGTATTTCGGTAATTTTGCAAACCAAGGGTATTTCTGTAATTTTCCAAAGTTAA
75667385 GGGTATTTTTGTAATGT
66 GGGTATTTTTGTAATGT
** ** * *
75667402 TGTAAATCAAGGGTATTTTTGTAATTTTCCAAATCAAGGGTATTT-TGATAATTTTCCAAA-TTA
1 TACAAATCAAGGGTATTTCGGTAATTTTGCAAACCAAGGGTATTTCTG-TAATTTTCCAAAGTTA
* *
75667465 GGGGTA-TTTTGATAATTT
65 AGGGTATTTTTG-TAATGT
* * *
75667483 TACAAATCGAGGGTATTTCGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTT
1 TACAAATCAAGGGTATTTCGGTAATTTTGCAAACCAAGGGTATTTCTGTAATTTT
75667537 GTAAACCAAG
Statistics
Matches: 109, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
80 14 0.13
81 50 0.46
82 45 0.41
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (82 bp):
TACAAATCAAGGGTATTTCGGTAATTTTGCAAACCAAGGGTATTTCTGTAATTTTCCAAAGTTAA
GGGTATTTTTGTAATGT
Found at i:75667574 original size:27 final size:27
Alignment explanation
Indices: 75667543--75667625 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
75667533 TTTTGTAAAC
*
75667543 CAAGGGTATTTCAATAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* *
75667570 TAA-GGCATTTCAGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* *
75667596 CAAGGGTATTTCAGTAATACTAGCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
75667623 CAA
1 CAA
75667626 TATGAGATTC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.48
27 25 0.52
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:75672864 original size:20 final size:20
Alignment explanation
Indices: 75672839--75672940 Score: 87
Period size: 20 Copynumber: 4.9 Consensus size: 20
75672829 TAGAGCATGA
* *
75672839 CACAAAGGCTAGCAGAATGC
1 CACAAAGGCTAACAGAATAC
** *
75672859 CACAAAGGCCTTATTAGAATAT
1 CACAAAGG-C-TAACAGAATAC
* *
75672881 CACAGAGGCTAACAAAATAC
1 CACAAAGGCTAACAGAATAC
*
75672901 CACAAAGGCCATATCAGAATAC
1 CACAAAGG-C-TAACAGAATAC
*
75672923 CACAGAGGCTAACAGAAT
1 CACAAAGGCTAACAGAAT
75672941 GTCAAAAAGA
Statistics
Matches: 64, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
20 30 0.47
21 4 0.06
22 30 0.47
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.15
Consensus pattern (20 bp):
CACAAAGGCTAACAGAATAC
Found at i:75672904 original size:42 final size:42
Alignment explanation
Indices: 75672839--75672936 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
75672829 TAGAGCATGA
* * * * * * *
75672839 CACAAAGGCTAGCAGAATGCCACAAAGGCCTTATTAGAATAT
1 CACAGAGGCTAACAAAATACCACAAAGGCCATATCAGAATAC
75672881 CACAGAGGCTAACAAAATACCACAAAGGCCATATCAGAATAC
1 CACAGAGGCTAACAAAATACCACAAAGGCCATATCAGAATAC
75672923 CACAGAGGCTAACA
1 CACAGAGGCTAACA
75672937 GAATGTCAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.44, C:0.24, G:0.17, T:0.14
Consensus pattern (42 bp):
CACAGAGGCTAACAAAATACCACAAAGGCCATATCAGAATAC
Found at i:75674224 original size:22 final size:22
Alignment explanation
Indices: 75674196--75674240 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
75674186 CCTTTGGCAA
75674196 TAACTTAAACAAAACTTACTCT
1 TAACTTAAACAAAACTTACTCT
75674218 TAACTTAAACAAAACTTACTCT
1 TAACTTAAACAAAACTTACTCT
75674240 T
1 T
75674241 TCCCTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (22 bp):
TAACTTAAACAAAACTTACTCT
Found at i:75681394 original size:24 final size:25
Alignment explanation
Indices: 75681338--75681428 Score: 89
Period size: 24 Copynumber: 3.7 Consensus size: 25
75681328 GACTCACCAC
* * *
75681338 AGCTCGTAAGAGCTTACTGATATATT
1 AGCTCATAAGAGCTTACTCAT-TTTT
75681364 AGCTCATAAGAGCTTACT-ATTTTT
1 AGCTCATAAGAGCTTACTCATTTTT
** *
75681388 AGCTCATTGGAGCTTA-TCA-TTTC
1 AGCTCATAAGAGCTTACTCATTTTT
*
75681411 AGCTCATATGAGCTTACT
1 AGCTCATAAGAGCTTACT
75681429 GTTCAGCTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
23 18 0.32
24 19 0.34
25 2 0.04
26 17 0.30
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.37
Consensus pattern (25 bp):
AGCTCATAAGAGCTTACTCATTTTT
Found at i:75681423 original size:23 final size:24
Alignment explanation
Indices: 75681364--75681472 Score: 99
Period size: 23 Copynumber: 4.8 Consensus size: 24
75681354 CTGATATATT
*
75681364 AGCTCATA-AGAGCTTA-CTATTTTT
1 AGCTCATATAGAGCTTATC-A-TTTC
*
75681388 AGCTCAT-TGGAGCTTATCATTTC
1 AGCTCATATAGAGCTTATCATTTC
75681411 AGCTCATAT-GAGCTTA-C-TGTTC
1 AGCTCATATAGAGCTTATCAT-TTC
*
75681433 AGCTCA-ATAGAGCTTATCGTTTC
1 AGCTCATATAGAGCTTATCATTTC
*
75681456 AGCT-AAATAGAGCTTAT
1 AGCTCATATAGAGCTTAT
75681473 TGTCCATCAG
Statistics
Matches: 75, Mismatches: 2, Indels: 17
0.80 0.02 0.18
Matches are distributed among these distances:
21 3 0.04
22 18 0.24
23 36 0.48
24 17 0.23
25 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (24 bp):
AGCTCATATAGAGCTTATCATTTC
Found at i:75681456 original size:45 final size:46
Alignment explanation
Indices: 75681364--75681459 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 46
75681354 CTGATATATT
* * * *
75681364 AGCTCATAAGAGCTTACTATTTTTAGCTCATTGGAGCTTATCATTTC
1 AGCTCATAAGAGCTTAC-ATGTTCAGCTCAATAGAGCTTATCATTTC
* *
75681411 AGCTCATATGAGCTTAC-TGTTCAGCTCAATAGAGCTTATCGTTTC
1 AGCTCATAAGAGCTTACATGTTCAGCTCAATAGAGCTTATCATTTC
75681456 AGCT
1 AGCT
75681460 AAATAGAGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 27 0.63
47 16 0.37
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (46 bp):
AGCTCATAAGAGCTTACATGTTCAGCTCAATAGAGCTTATCATTTC
Found at i:75684193 original size:26 final size:26
Alignment explanation
Indices: 75684164--75684216 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
75684154 TCAAATTAGG
75684164 AAATAAAGATATTATGTATCTAATAT
1 AAATAAAGATATTATGTATCTAATAT
75684190 AAATAAAGATATTATGTATCTAATAT
1 AAATAAAGATATTATGTATCTAATAT
75684216 A
1 A
75684217 CTTTTTTTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.38
Consensus pattern (26 bp):
AAATAAAGATATTATGTATCTAATAT
Found at i:75684787 original size:11 final size:12
Alignment explanation
Indices: 75684747--75684790 Score: 54
Period size: 11 Copynumber: 3.6 Consensus size: 12
75684737 TTTGATACTC
75684747 TGTTTTCAAGATA
1 TGTTTT-AAGATA
*
75684760 TGTTTTTAAGTTA
1 TG-TTTTAAGATA
75684773 TGTTTTAA-ATA
1 TGTTTTAAGATA
75684784 TGTTTTA
1 TGTTTTA
75684791 CACGTGCTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 9 0.32
12 6 0.21
13 9 0.32
14 4 0.14
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (12 bp):
TGTTTTAAGATA
Found at i:75684859 original size:14 final size:14
Alignment explanation
Indices: 75684810--75684859 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
75684800 CTATGCGAGC
75684810 CTATGTTTTAAAAG
1 CTATGTTTTAAAAG
75684824 C-ATGTTTTAAAAG
1 CTATGTTTTAAAAG
** *
75684837 -TACAATTTTATAAG
1 CTA-TGTTTTAAAAG
75684851 CTATGTTTT
1 CTATGTTTT
75684860 TATGAGTTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
13 13 0.46
14 13 0.46
15 2 0.07
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (14 bp):
CTATGTTTTAAAAG
Found at i:75688789 original size:27 final size:27
Alignment explanation
Indices: 75688722--75688848 Score: 150
Period size: 27 Copynumber: 4.7 Consensus size: 27
75688712 TTAGTTTACC
75688722 AAATTACCAAAATACCCCTGATTTGT-
1 AAATTACCAAAATACCCCTGATTTGTA
* ** * *
75688748 GAATTACTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
75688775 AATTTACCAAAATACCCTTGGTTTGCA
1 AAATTACCAAAATACCCCTGATTTGTA
75688802 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
75688829 AAATTACCAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
75688849 TAAGGTAGAG
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:75688862 original size:27 final size:27
Alignment explanation
Indices: 75688803--75689052 Score: 279
Period size: 27 Copynumber: 9.3 Consensus size: 27
75688793 TGGTTTGCAA
* ** *
75688803 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
75688830 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75688857 AGTTACTGAAATACCCCTGTAGGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75688883 AAGTTACTGAAATACCCCTATAGGGTAG
1 AA-TTACCGAAATACCCCTGTAGGGTAG
* * *
75688911 AGTTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
75688938 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75688965 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75688992 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
75689019 AATTACCGAGATAACCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
75689046 AATTACC
1 AATTACC
75689053 ATTTTGCCCC
Statistics
Matches: 198, Mismatches: 22, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
26 3 0.02
27 194 0.98
28 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:75689154 original size:11 final size:11
Alignment explanation
Indices: 75689138--75689202 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
75689128 ATATTGTTAT
75689138 ACATGATATGC
1 ACATGATATGC
75689149 ACATGATATG-
1 ACATGATATGC
**
75689159 TTATGATATGC
1 ACATGATATGC
75689170 ACATGATATGC
1 ACATGATATGC
* *
75689181 -TATGATATAC
1 ACATGATATGC
* *
75689191 TCATTATATGC
1 ACATGATATGC
75689202 A
1 A
75689203 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.38
11 26 0.62
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (11 bp):
ACATGATATGC
Found at i:75689201 original size:21 final size:21
Alignment explanation
Indices: 75689140--75689188 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
75689130 ATTGTTATAC
*
75689140 ATGATATGCACATGATATGTT
1 ATGATATGCACATGATATGCT
75689161 ATGATATGCACATGATATGCT
1 ATGATATGCACATGATATGCT
75689182 ATGATAT
1 ATGATAT
75689189 ACTCATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (21 bp):
ATGATATGCACATGATATGCT
Found at i:75692503 original size:27 final size:28
Alignment explanation
Indices: 75692441--75692504 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
75692431 CAGTCACTTG
75692441 CCCACAAGGGCAAAATAGTCATTTAACA
1 CCCACAAGGGCAAAATAGTCATTTAACA
* * *
75692469 CCC-TAAGGGCAAAATGGT-AGTTTTAC-
1 CCCACAAGGGCAAAATAGTCA-TTTAACA
75692495 CCCACAAGGG
1 CCCACAAGGG
75692505 TATCTCGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.13
27 23 0.77
28 3 0.10
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (28 bp):
CCCACAAGGGCAAAATAGTCATTTAACA
Found at i:75692548 original size:27 final size:27
Alignment explanation
Indices: 75692492--75692786 Score: 394
Period size: 27 Copynumber: 11.0 Consensus size: 27
75692482 ATGGTAGTTT
* *
75692492 TACCCCACAAGGGTATCTC-GTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
75692518 TACCCTACAGGGGTATTTTGGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
75692545 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
**
75692572 TACCCTACAAGGGTATTTTAGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
75692599 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* * *
75692626 TATCCTACAAGGGTATTTCAGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
75692653 TACCCTACAAGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* **
75692680 TACCCTACAGGGGTATTTCAATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* * *
75692707 TACCCTATAGGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
75692734 TACCCTACAAGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
75692761 TACCCTACAAGGGTATTTCGATAATT
1 TACCCTACAAGGGTATTTCGGTAATT
75692787 TTGTAAATCG
Statistics
Matches: 241, Mismatches: 27, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
26 15 0.06
27 226 0.94
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATTC
Found at i:75692855 original size:27 final size:26
Alignment explanation
Indices: 75692825--75692979 Score: 139
Period size: 27 Copynumber: 5.7 Consensus size: 26
75692815 TGTAAATTAG
*
75692825 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAA-TCGA
* *
75692852 GGGTATTTTAGTAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACA-ATCGA
** ** *
75692879 GGGTATTTCAGTAATTTCCCAAATCAGG
1 GGGTATTTTGGTAATTTTAC-AATC-GA
* *
75692907 GGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAATCGA
* * *
75692933 GGGGTATTTTGGTAATTTTATAAACTA
1 -GGGTATTTTGGTAATTTTACAATCGA
75692960 GGGGTATTTTGGTAATTTTA
1 -GGGTATTTTGGTAATTTTA
75692980 TAAACCAATG
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
27 90 0.83
28 18 0.17
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAATCGA
Found at i:75692938 original size:55 final size:54
Alignment explanation
Indices: 75692852--75693004 Score: 148
Period size: 54 Copynumber: 2.8 Consensus size: 54
75692842 TACAAGTCGA
* ** * * *
75692852 GGGTATTTTAGTAATTTTAC-AGGTCGAGGGTATTTCAGTAATTTCCCAAA-TCAGG
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAGTAATTTCACAAACT-A-G
* * *
75692907 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTCACAAACTAG
* * **
75692961 GGGTATTTTGGTAATTTTATAAACCAATGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTT
75693005 GGTAAAATAA
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
54 40 0.49
55 38 0.46
56 4 0.05
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTCACAAACTAG
Found at i:75692965 original size:82 final size:82
Alignment explanation
Indices: 75692824--75692977 Score: 186
Period size: 82 Copynumber: 1.9 Consensus size: 82
75692814 CTGTAAATTA
* * * ** *
75692824 GGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAGGTCGAGGGTATTTCA
1 GGGGTACTTTGGTAATTTTACAACTAGAGGGTATTTTAGTAATTTTAAAACTAGAGGGTATTTCA
75692889 GTAATTTCCCAAATCAG
66 GTAATTTCCCAAATCAG
* *
75692906 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATAAACTAG-GGGTATTT
1 GGGGTACTTTGGTAATTTTAC-AACTAGAGGGTATTTTAGTAATTTTA-AAACTAGAGGGTATTT
**
75692969 TGGTAATTT
64 CAGTAATTT
75692978 TATAAACCAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
82 53 0.88
83 7 0.12
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.40
Consensus pattern (82 bp):
GGGGTACTTTGGTAATTTTACAACTAGAGGGTATTTTAGTAATTTTAAAACTAGAGGGTATTTCA
GTAATTTCCCAAATCAG
Found at i:75692980 original size:27 final size:27
Alignment explanation
Indices: 75692906--75693004 Score: 153
Period size: 27 Copynumber: 3.7 Consensus size: 27
75692896 CCCAAATCAG
*
75692906 GGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTATAAACTA
75692933 GGGGTATTTTGGTAATTTTATAAACTA
1 GGGGTATTTTGGTAATTTTATAAACTA
*
75692960 GGGGTATTTTGGTAATTTTATAAACCA
1 GGGGTATTTTGGTAATTTTATAAACTA
** *
75692987 ATGGTATTTTAGTAATTT
1 GGGGTATTTTGGTAATTT
75693005 GGTAAAATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTATAAACTA
Found at i:75694630 original size:25 final size:25
Alignment explanation
Indices: 75694602--75694671 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
75694592 CTCTTTTAAT
*
75694602 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
75694627 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
75694652 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
75694672 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:75694906 original size:27 final size:27
Alignment explanation
Indices: 75694877--75695090 Score: 259
Period size: 27 Copynumber: 7.9 Consensus size: 27
75694867 GGGCAAAATG
* * * *
75694877 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
75694904 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
75694931 GTATTTCTACCCTACAAAGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
75694958 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * *
75694985 GTAACTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
75695012 GTAATTTTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
75695039 GTAATTCTACCCTAC-AGGGATATTTCA
1 GTAATTCTACCCTACAAGGG-TATTTCA
* *
75695066 GTAATTCTACCCTATAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
75695091 TAATATTTTA
Statistics
Matches: 161, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 4 0.02
27 154 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:75695023 original size:81 final size:81
Alignment explanation
Indices: 75694877--75695090 Score: 304
Period size: 81 Copynumber: 2.6 Consensus size: 81
75694867 GGGCAAAATG
* * * * * *
75694877 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACC
75694942 CTACAAAGGTATTTCA
66 CTACAAAGGTATTTCA
* * *
75694958 GTAATTCTACCCTACAGGGGTATTTTAGTAACTCTACCCTATAGGGGTATTTCGGTAATTT-TAC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGT-ATTTCTAC
* *
75695022 CCTACAAGGGTATTTCG
65 CCTACAAAGGTATTTCA
*
75695039 GTAATTCTACCCTACAGGGATATTTCAGTAATTCTACCCTATAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
75695091 TAATATTTTA
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
81 114 0.97
82 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACC
CTACAAAGGTATTTCA
Found at i:75695115 original size:26 final size:27
Alignment explanation
Indices: 75695085--75695144 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
75695075 CCCTATAGGG
*
75695085 GTATTTTAAT-ATTTTACAAATCAAGA
1 GTATTTTAATAATTTCACAAATCAAGA
** *
75695111 GTATTTCGATAATTTCACAAATCGAGA
1 GTATTTTAATAATTTCACAAATCAAGA
75695138 GTATTTT
1 GTATTTT
75695145 CGTAATTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.42
Consensus pattern (27 bp):
GTATTTTAATAATTTCACAAATCAAGA
Found at i:75695130 original size:27 final size:27
Alignment explanation
Indices: 75695095--75695261 Score: 126
Period size: 27 Copynumber: 6.2 Consensus size: 27
75695085 GTATTTTAAT
75695095 ATTTTACAAATCAAGAGTA-TTTCGATA
1 ATTTTACAAATCAAGAGTATTTTCG-TA
* *
75695122 ATTTCACAAATCGAGAGTATTTTCGTA
1 ATTTTACAAATCAAGAGTATTTTCGTA
* * * *
75695149 ATTTTAC-AAGCTAGGGGTATTTTGGTA
1 ATTTTACAAATC-AAGAGTATTTTCGTA
* * * *
75695176 ATTTTACAAACCAGGGGTATTTTAGTA
1 ATTTTACAAATCAAGAGTATTTTCGTA
* *
75695203 ATTTTACAAA-CTAGGGGTATTTT-GTTA
1 ATTTTACAAATC-AAGAGTATTTTCG-TA
* * * *
75695230 ATTTTACTAATCGAGGGTATTTTGGTA
1 ATTTTACAAATCAAGAGTATTTTCGTA
75695257 ATTTT
1 ATTTT
75695262 GTAAACTAAG
Statistics
Matches: 120, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
26 5 0.04
27 105 0.88
28 10 0.08
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (27 bp):
ATTTTACAAATCAAGAGTATTTTCGTA
Found at i:75695170 original size:54 final size:54
Alignment explanation
Indices: 75695083--75695302 Score: 214
Period size: 54 Copynumber: 4.1 Consensus size: 54
75695073 TACCCTATAG
* * * *
75695083 GGGTATTTTAAT-ATTTTACAAA-TCAAGAGTATTTCGATAATTTCACAAATCGA
1 GGGTATTTTAGTAATTTTACAAACT-AGGGGTATTTCGATAATTTTACAAATCGA
* * * * * *
75695136 GAGTATTTTCGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAATCGA
* * *
75695189 GGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGTTAATTTTACTAATCGA
1 -GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAATCGA
* ** * **
75695244 GGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTC-AGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGA-TAATTTTACAAATCGA
75695298 GGGTA
1 GGGTA
75695303 AAACGGTAAT
Statistics
Matches: 137, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
53 11 0.08
54 123 0.90
55 3 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAATCGA
Found at i:75695273 original size:27 final size:27
Alignment explanation
Indices: 75695138--75695288 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
75695128 CAAATCGAGA
* *
75695138 GTATTTTCGTAATTTTACAAGCTAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
*
75695165 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
*
75695192 GTATTTTAGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
* * *
75695219 GTATTTTGTTAATTTTACTAA-TCGAGG
1 GTATTTTGGTAATTTTACAAACTAG-GG
** *
75695246 GTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTGGTAATTTTACAAACTAGGG
**
75695273 GTATTTCAGTAATTTT
1 GTATTTTGGTAATTTT
75695289 GTAAATCGAG
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 2 0.02
27 102 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACTAGGG
Found at i:75695300 original size:27 final size:27
Alignment explanation
Indices: 75695238--75695437 Score: 111
Period size: 27 Copynumber: 7.4 Consensus size: 27
75695228 TAATTTTACT
*
75695238 AATCGAGGGTATTTTGGTAATTTTGTA
1 AATCGAGGGTATTTCGGTAATTTTGTA
* *
75695265 AA-CTAAGGGTATTTCAGTAATTTTGTA
1 AATC-GAGGGTATTTCGGTAATTTTGTA
*** * *
75695292 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTATTTCGGTAATTTTGTA
** * * *
75695319 AATCGAGGGTAAAAT-AGTAATTCTATA
1 AATCGAGGGT-ATTTCGGTAATTTTGTA
* ** * *
75695346 AATCAAGGGTAAAAT-GGTAATTCTATA
1 AATCGAGGGT-ATTTCGGTAATTTTGTA
** *
75695373 AATCGAGGGTAAAAT-GGTAATTCTGTA
1 AATCGAGGGT-ATTTCGGTAATTTTGTA
*** *
75695400 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTATTTCGGTAATTTTGTA
75695427 AATCGAGGGTA
1 AATCGAGGGTA
75695438 AAATGGTAAT
Statistics
Matches: 152, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
26 4 0.03
27 144 0.95
28 4 0.03
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTATTTCGGTAATTTTGTA
Found at i:75695302 original size:81 final size:81
Alignment explanation
Indices: 75695081--75695302 Score: 229
Period size: 81 Copynumber: 2.8 Consensus size: 81
75695071 TCTACCCTAT
** * * * *
75695081 AGGGGTATTTTAAT-ATTTTACAAATCAAGAGTATTTC-GATAATTTCACAAATCGAGAGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTT
*
75695144 TCGTAATTTTACAAGCT
65 TCGTAATTTTACAAGCG
* * *
75695161 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAATCGA-GGGTATTT
*
75695225 T-GTTAATTTTACTAATCG
65 TCG-TAATTTTAC-AAGCG
** * **
75695243 A-GGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTA
75695303 AAACGGTAAT
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
80 15 0.13
81 95 0.81
82 7 0.06
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTT
CGTAATTTTACAAGCG
Found at i:75695438 original size:27 final size:27
Alignment explanation
Indices: 75695281--75695505 Score: 351
Period size: 27 Copynumber: 8.3 Consensus size: 27
75695271 GGGTATTTCA
* *
75695281 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
75695308 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
75695335 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
75695362 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
75695389 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
75695416 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
75695443 GTAATTCTGAAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
75695470 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
75695497 GTAATTCTG
1 GTAATTCTG
75695506 GAAACGAACT
Statistics
Matches: 182, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:75700950 original size:21 final size:21
Alignment explanation
Indices: 75700925--75700975 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
75700915 ATTTTGATAT
*
75700925 ACATGATATGACATGACATGC
1 ACATGATATGACATGACATGA
** *
75700946 ACATGATATGTTATGAGATGA
1 ACATGATATGACATGACATGA
75700967 ACATGATAT
1 ACATGATAT
75700976 ACTTATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (21 bp):
ACATGATATGACATGACATGA
Found at i:75701094 original size:24 final size:25
Alignment explanation
Indices: 75701021--75701105 Score: 127
Period size: 25 Copynumber: 3.4 Consensus size: 25
75701011 GGAGGAAGTG
* *
75701021 CAAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAT
*
75701046 CGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAT
75701071 CAAAAAGGGCTTTGCCCCAG-TTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAT
*
75701095 TAAAAAGGGCT
1 CAAAAAGGGCT
75701106 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 14 0.25
25 41 0.75
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAT
Found at i:75701115 original size:25 final size:24
Alignment explanation
Indices: 75701021--75701119 Score: 117
Period size: 25 Copynumber: 4.0 Consensus size: 24
75701011 GGAGGAAGTG
* *
75701021 CAAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAG-TTAT
*
75701046 CGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAG-TTAT
75701071 CAAAAAGGGCTTTGCCCCAGTTAT
1 CAAAAAGGGCTTTGCCCCAGTTAT
* **
75701095 TAAAAAGGGCTAGGCCTCCAGTTAT
1 CAAAAAGGGCTTTGCC-CCAGTTAT
75701120 GATAAAGCAG
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
24 17 0.26
25 49 0.74
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAAGGGCTTTGCCCCAGTTAT
Found at i:75701377 original size:30 final size:31
Alignment explanation
Indices: 75701310--75701385 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
75701300 CACTTACAAT
* *
75701310 AAAGGCTTCGGCCTAGTGATATGAATTTTGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
75701341 AAAGGCTTCGGCCCAGTGTTATGAATTATG-
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
75701371 AAAGGCTTCAGCCCA
1 AAAGGCTTCGGCCCA
75701386 ATATATGTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 14 0.34
31 27 0.66
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTATGA
Found at i:75703910 original size:18 final size:19
Alignment explanation
Indices: 75703873--75703910 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
75703863 ATCTCACATA
75703873 ATTTAAACCAACTAACTCAT
1 ATTTAAACC-ACTAACTCAT
*
75703893 ATTTAAACC-CTAATTCAT
1 ATTTAAACCACTAACTCAT
75703911 CCTTTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (19 bp):
ATTTAAACCACTAACTCAT
Found at i:75709008 original size:27 final size:27
Alignment explanation
Indices: 75708978--75709155 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75708968 ATATTGAGTC
* * * *
75708978 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
75709005 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75709032 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
75709060 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
75709087 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
75709114 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75709141 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75709156 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:75709117 original size:82 final size:81
Alignment explanation
Indices: 75708999--75709154 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75708989 TGCTATATAA
* *
75708999 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
75709064 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75709081 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75709145 CACTTAGTGC
65 CACTTAGTGC
75709155 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75717071 original size:27 final size:27
Alignment explanation
Indices: 75717041--75717218 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75717031 ATATTGAGTC
* * * *
75717041 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
75717068 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75717095 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
75717123 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
75717150 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
75717177 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75717204 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75717219 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:75717180 original size:82 final size:81
Alignment explanation
Indices: 75717062--75717217 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75717052 TGCTATATAA
* *
75717062 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
75717127 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75717144 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75717208 CACTTAGTGC
65 CACTTAGTGC
75717218 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75719686 original size:30 final size:31
Alignment explanation
Indices: 75719652--75719722 Score: 72
Period size: 37 Copynumber: 2.1 Consensus size: 31
75719642 AAAGTCCATG
*
75719652 GTAA-CTCTTTGCCATTTCCACTCCAGTATT
1 GTAACCTCTTTCCCATTTCCACTCCAGTATT
75719682 GTAACCGGCTGCTCTTTCCCATTTCCACTCCAGTATT
1 GTAA----C--CTCTTTCCCATTTCCACTCCAGTATT
75719719 GTAA
1 GTAA
75719723 TTGGCTATAG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
30 4 0.12
37 29 0.88
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.37
Consensus pattern (31 bp):
GTAACCTCTTTCCCATTTCCACTCCAGTATT
Found at i:75724270 original size:26 final size:26
Alignment explanation
Indices: 75724212--75724301 Score: 128
Period size: 26 Copynumber: 3.4 Consensus size: 26
75724202 ACATTTGGTA
* *
75724212 CTGATTCTG-TATTGGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGGC-TAAG-CCAC
75724239 CTGATTCTGTTAATGGGCTAAGCCAC
1 CTGATTCTGTTAATGGGCTAAGCCAC
75724265 CTGATTCTGTTAATGGGCTAAGCCAC
1 CTGATTCTGTTAATGGGCTAAGCCAC
*
75724291 CTGATACTGTT
1 CTGATTCTGTT
75724302 TCTGTGATAG
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
26 40 0.68
27 12 0.20
28 7 0.12
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (26 bp):
CTGATTCTGTTAATGGGCTAAGCCAC
Found at i:75728832 original size:50 final size:50
Alignment explanation
Indices: 75728757--75728856 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
75728747 TGGCATAGAG
* *
75728757 TTAGTACCGGGAACTACTCTGATTTTGAGAGCTCCATATAGAATGTCTCT
1 TTAGTACCGAGAACTACTCTGATTTTGAAAGCTCCATATAGAATGTCTCT
*
75728807 TTAGTACCGAGAACTACTCTGATTTTGAAAGCTCCGTATAGAATGTCTCT
1 TTAGTACCGAGAACTACTCTGATTTTGAAAGCTCCATATAGAATGTCTCT
75728857 GACCGAGTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (50 bp):
TTAGTACCGAGAACTACTCTGATTTTGAAAGCTCCATATAGAATGTCTCT
Found at i:75734187 original size:30 final size:30
Alignment explanation
Indices: 75734131--75734187 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
75734121 AGGCACTTCT
*
75734131 ACACGGGTGATCCACACACCCGTGTGTGAC
1 ACACGGGTGATCCACACACCCCTGTGTGAC
**
75734161 ACACGGGTAGA-CCACATGCCCCTGTGT
1 ACACGGGT-GATCCACACACCCCTGTGT
75734188 CATGGCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 21 0.91
31 2 0.09
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (30 bp):
ACACGGGTGATCCACACACCCCTGTGTGAC
Found at i:75736963 original size:27 final size:26
Alignment explanation
Indices: 75736925--75736983 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
75736915 AGTATGGCTG
* * *
75736925 CCAGAACTGATATTTTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
75736951 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
75736978 CCAGAA
1 CCAGAA
75736984 TCAAATAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:75736995 original size:27 final size:27
Alignment explanation
Indices: 75736943--75737005 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
75736933 GATATTTTGA
* * *
75736943 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAAATAATGTGG
75736970 CAGAGCCACCAGA-ATCAAATAATGTGG
1 CAGAGCCACCAGATA-CAAATAATGTGG
*
75736997 CAAAGCCAC
1 CAGAGCCAC
75737006 TAACAGAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (27 bp):
CAGAGCCACCAGATACAAATAATGTGG
Found at i:75737281 original size:27 final size:26
Alignment explanation
Indices: 75737244--75737298 Score: 92
Period size: 27 Copynumber: 2.1 Consensus size: 26
75737234 GTCATCAAAT
75737244 ACAGATATTGTGGCAGAGCCACCAGA
1 ACAGATATTGTGGCAGAGCCACCAGA
*
75737270 ACAGATATTTGTGGCATAGCCACCAGA
1 ACAGATA-TTGTGGCAGAGCCACCAGA
75737297 AC
1 AC
75737299 GCTTCCTCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (26 bp):
ACAGATATTGTGGCAGAGCCACCAGA
Found at i:75737570 original size:27 final size:27
Alignment explanation
Indices: 75737550--75738683 Score: 1638
Period size: 27 Copynumber: 42.2 Consensus size: 27
75737540 GGGTATCTAG
75737550 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75737576 ----TTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75737599 GTAACTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75737626 GTAATTTTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75737653 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75737680 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75737707 GTAATTCTACCCTATAAGGGTATTTCT
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75737734 GTAATTCTACCCTATAGTGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75737761 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75737788 GTAATTTTATCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
75737815 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75737842 GTAATTTTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75737869 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75737895 GATAACTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
75737923 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75737950 GTAATTTTATCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75737977 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738004 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738031 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738058 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738085 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738112 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738139 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738166 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738193 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738220 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738247 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738274 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738301 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738328 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738355 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75738382 GTAATTTTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738409 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738435 GATAACTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
75738463 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75738490 GTATTTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
75738517 GTAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75738544 GTAATTCTACCCTACAAGGGTA-TTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75738570 GTAATTCTACCGTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75738597 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
75738623 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
75738651 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
75738678 GTAATT
1 GTAATT
75738684 TTACAAATCG
Statistics
Matches: 1024, Mismatches: 72, Indels: 23
0.92 0.06 0.02
Matches are distributed among these distances:
22 21 0.02
26 24 0.02
27 976 0.95
28 3 0.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:75737576 original size:19 final size:19
Alignment explanation
Indices: 75737549--75737596 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 19
75737539 AGGGTATCTA
*
75737549 GGTAATTCTACCCTACAGG
1 GGTATTTCTACCCTACAGG
75737568 GGTATTTCTTCTACCCTACAGG
1 GGTA--T-TTCTACCCTACAGG
75737590 GGTATTT
1 GGTATTT
75737597 TAGTAACTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 6 0.24
20 1 0.04
22 18 0.72
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (19 bp):
GGTATTTCTACCCTACAGG
Found at i:75738698 original size:27 final size:27
Alignment explanation
Indices: 75738668--75738792 Score: 121
Period size: 27 Copynumber: 4.7 Consensus size: 27
75738658 TACCCTACAG
*
75738668 GGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
75738695 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** ** * * *
75738721 CAGTGCTTCGGTAATTTTATAAA-CCA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
75738747 GGGGTACTTT-GGTAATTTTACAAGTCGA
1 -GGGTA-TTTCAGTAATTTTACAAATCGA
75738775 GGGTATTTCAGTAATTTT
1 GGGTATTTCAGTAATTTT
75738793 GTAAACTAAA
Statistics
Matches: 77, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
26 25 0.32
27 48 0.62
28 4 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:75742365 original size:24 final size:24
Alignment explanation
Indices: 75742336--75742400 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
75742326 ACCCCCTTCC
75742336 CCCTTCCCTTTCCTTTC-TCTTTCT
1 CCCTTCCCTTTCCTTTCTTCTTT-T
** **
75742360 TTCTTCCCCATCCTTTCTTCTTTT
1 CCCTTCCCTTTCCTTTCTTCTTTT
*
75742384 CCCTTCCCTTTCTTTTC
1 CCCTTCCCTTTCCTTTC
75742401 CCCTTTCATC
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
24 26 0.84
25 5 0.16
ACGTcount: A:0.02, C:0.43, G:0.00, T:0.55
Consensus pattern (24 bp):
CCCTTCCCTTTCCTTTCTTCTTTT
Found at i:75742977 original size:83 final size:83
Alignment explanation
Indices: 75742846--75743095 Score: 464
Period size: 83 Copynumber: 3.0 Consensus size: 83
75742836 TATTCTAGTT
* * * *
75742846 TTTACTTTCATTAGTGTTAGGGTTTACACATTTTATAACTACAGTTTTATTTTTACTTAGATTCT
1 TTTACTTTCATTAGTGTTGGGGTATACACATTTTAGAACTATAGTTTTATTTTTACTTAGATTCT
75742911 ATTTTTTCCTTTGTCTTG
66 ATTTTTTCCTTTGTCTTG
75742929 TTTACTTTCATTAGTGTTGGGGTATACACATTTTAGAACTATAGTTTTATTTTTACTTAGATTCT
1 TTTACTTTCATTAGTGTTGGGGTATACACATTTTAGAACTATAGTTTTATTTTTACTTAGATTCT
75742994 ATTTTTTCCTTTGTCTTG
66 ATTTTTTCCTTTGTCTTG
75743012 TTTACTTTCATTAGTGTTGGGGTATACACATTTTAGAACTATAGTTTTATTTTTACTTAGATTCT
1 TTTACTTTCATTAGTGTTGGGGTATACACATTTTAGAACTATAGTTTTATTTTTACTTAGATTCT
75743077 ATTTTTTCCTTTGTCTTG
66 ATTTTTTCCTTTGTCTTG
75743095 T
1 T
75743096 GGTTAAATAC
Statistics
Matches: 163, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 163 1.00
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.55
Consensus pattern (83 bp):
TTTACTTTCATTAGTGTTGGGGTATACACATTTTAGAACTATAGTTTTATTTTTACTTAGATTCT
ATTTTTTCCTTTGTCTTG
Found at i:75752982 original size:32 final size:32
Alignment explanation
Indices: 75752946--75753010 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
75752936 CATATAATTA
75752946 TAACATTTATCAATAACAAAATGTCATACTCT
1 TAACATTTATCAATAACAAAATGTCATACTCT
75752978 TAACATTTATCAATAACAAAATGTCATACTCT
1 TAACATTTATCAATAACAAAATGTCATACTCT
75753010 T
1 T
75753011 TGATCCATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.18, G:0.03, T:0.35
Consensus pattern (32 bp):
TAACATTTATCAATAACAAAATGTCATACTCT
Found at i:75753817 original size:17 final size:19
Alignment explanation
Indices: 75753787--75753822 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
75753777 CAACCCATAT
75753787 TGTAACACCCCT-AACCCG
1 TGTAACACCCCTAAACCCG
75753805 TGTAACA-CCCTAAACCCG
1 TGTAACACCCCTAAACCCG
75753823 ACCTGGACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.31, C:0.42, G:0.11, T:0.17
Consensus pattern (19 bp):
TGTAACACCCCTAAACCCG
Found at i:75754487 original size:18 final size:18
Alignment explanation
Indices: 75754464--75754515 Score: 79
Period size: 17 Copynumber: 2.9 Consensus size: 18
75754454 CTTGGCCCAT
75754464 TGCAGTAACAGTAAACAA
1 TGCAGTAACAGTAAACAA
* *
75754482 TGCAGTAATAGT-AACAG
1 TGCAGTAACAGTAAACAA
75754499 TGCAGTAACAGTAAACA
1 TGCAGTAACAGTAAACA
75754516 GTATGCAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 15 0.50
18 15 0.50
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAA
Found at i:75754517 original size:18 final size:18
Alignment explanation
Indices: 75754464--75754517 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
75754454 CTTGGCCCAT
*
75754464 TGCAGTAACAGTAAACAA
1 TGCAGTAACAGTAAACAG
*
75754482 TGCAGTAATAGT-AACAG
1 TGCAGTAACAGTAAACAG
75754499 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAAACAG
75754517 T
1 T
75754518 ATGCAAGTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
17 15 0.47
18 17 0.53
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.20
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:75754872 original size:27 final size:27
Alignment explanation
Indices: 75754839--75754937 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 27
75754829 ACATAGGGGT
* *
75754839 AAAACAGTCATCTTACTATAAAAGGGC
1 AAAACAGTCATTTTACCATAAAAGGGC
* * *
75754866 AAAACAGCCATTTTACCCTATAAGGGC
1 AAAACAGTCATTTTACCATAAAAGGGC
* * * *
75754893 AAAACAGTCATTTTACCTTAGAAGCGT
1 AAAACAGTCATTTTACCATAAAAGGGC
* *
75754920 AAAATAATCATTTTACCA
1 AAAACAGTCATTTTACCA
75754938 ATTAGGGGTC
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCATAAAAGGGC
Found at i:75757992 original size:18 final size:18
Alignment explanation
Indices: 75757966--75758020 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
75757956 CTTGGTCCAT
*
75757966 TGCAGTAACAGTAAACAG
1 TGCAATAACAGTAAACAG
75757984 TGCAATAACAGT-AACAG
1 TGCAATAACAGTAAACAG
* *
75758001 TACAATAATAGTAAACAG
1 TGCAATAACAGTAAACAG
75758019 TG
1 TG
75758021 TAGTAACAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 15 0.47
18 17 0.53
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (18 bp):
TGCAATAACAGTAAACAG
Found at i:75758411 original size:27 final size:26
Alignment explanation
Indices: 75758378--75758451 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
75758368 ACTATAAAAG
*
75758378 GGCAAAAGAGTCATTTTACCCCATAA
1 GGCAAAACAGTCATTTTACCCCATAA
* *
75758404 GTGCAAAACTGTCATTTTACCTCATAA
1 G-GCAAAACAGTCATTTTACCCCATAA
*
75758431 GGCCAAAATAGTCATTTTACC
1 GG-CAAAACAGTCATTTTACC
75758452 AATTAGGGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (26 bp):
GGCAAAACAGTCATTTTACCCCATAA
Found at i:75760731 original size:43 final size:43
Alignment explanation
Indices: 75760670--75760842 Score: 167
Period size: 43 Copynumber: 4.0 Consensus size: 43
75760660 AAAGCTTGTA
** *
75760670 CGATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATAT
1 CGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATAT
* * *
75760713 CGATGCCACTGTCCCAGACAG-GGTCTTACA-CAAACTCATATA-
1 CGATGCCAATGTCCCAGAC-GTGGTCTTACATGAAA-TCAAATAT
**
75760755 CGATGCCAATGTCCCAGAAATGGTCTTAC-TCGTAAATCACAA-AT
1 CGATGCCAATGTCCCAGACGTGGTCTTACAT-G-AAATCA-AATAT
* * *
75760799 CGATGCCAATATCCCAGACGTGGTCTTACACGAAATCACATAT
1 CGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATAT
75760842 C
1 C
75760843 ATAATCCTAT
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
42 28 0.27
43 44 0.42
44 32 0.31
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATAT
Found at i:75760824 original size:86 final size:85
Alignment explanation
Indices: 75760668--75760829 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 85
75760658 GAAAAGCTTG
** * *
75760668 TACGATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACA
1 TACGATGCCAACATCCCAGAAATGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACA
75760733 GGGTCTTACACAAACTCATA
66 GGGTCTTACACAAACTCATA
**
75760753 TACGATGCCAATGTCCCAGAAATGGTCTTAC-TCGTAAATCACAA-ATCGATGCCAATATCCCAG
1 TACGATGCCAACATCCCAGAAATGGTCTTACAT-GT-AATCA-AATATCGATGCCAATATCCCAG
75760816 AC-GTGGTCTTACAC
63 ACAG-GGTCTTACAC
75760830 GAAATCACAT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
84 1 0.01
85 30 0.45
86 34 0.51
87 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (85 bp):
TACGATGCCAACATCCCAGAAATGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACA
GGGTCTTACACAAACTCATA
Found at i:75762365 original size:13 final size:13
Alignment explanation
Indices: 75762347--75762372 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75762337 TTTTTCCATG
75762347 GATGAGTCATTAA
1 GATGAGTCATTAA
75762360 GATGAGTCATTAA
1 GATGAGTCATTAA
75762373 AATATCTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
GATGAGTCATTAA
Found at i:75766864 original size:14 final size:14
Alignment explanation
Indices: 75766845--75766879 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
75766835 GCGAGAGGAA
75766845 GCTTACCAGTGGTG
1 GCTTACCAGTGGTG
75766859 GCTTACCAGTGGTG
1 GCTTACCAGTGGTG
75766873 GCTTACC
1 GCTTACC
75766880 GTGAAAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.14, C:0.26, G:0.31, T:0.29
Consensus pattern (14 bp):
GCTTACCAGTGGTG
Found at i:75772685 original size:48 final size:48
Alignment explanation
Indices: 75772629--75772860 Score: 245
Period size: 48 Copynumber: 4.8 Consensus size: 48
75772619 GGTGAATTGT
*
75772629 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
* * * * * * *
75772677 TGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
* **
75772725 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATC-A--C
1 CGATGCCATGTCCCAAACATGGTCTTACACTGG--CTCAC-ATGTCGAGGC
* * * *
75772773 TGATGCCATGTTCCAAACATGGTTTTACACTGGCTCACATGTCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
* * * *
75772821 CGATACCATGTCCCAGACATGGTCTTACACTTGCACACAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT
75772861 ATCACCCAAA
Statistics
Matches: 149, Mismatches: 29, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
45 3 0.02
46 5 0.03
48 134 0.90
50 5 0.03
51 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
Found at i:75772793 original size:96 final size:95
Alignment explanation
Indices: 75772629--75772851 Score: 272
Period size: 96 Copynumber: 2.3 Consensus size: 95
75772619 GGTGAATTGT
* * **
75772629 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACACATCGA-GCTGATGCCATGTCCCAAA
* *
75772694 CATGGTCTTACACTAGCTCTCGTCTCAAT-GC
65 CATGGTCTTACACTAGCTCACATCTC-ATGGC
*
75772725 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATC-A-CTGATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCAC-ACATCGAGCTGATGCCATGTCCCA
* * * *
75772788 AACATGGTTTTACACTGGCTCACATGTCGTGGC
63 AACATGGTCTTACACTAGCTCACATCTCATGGC
*
75772821 CGATACCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
75772852 TGCACACATA
Statistics
Matches: 111, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
95 1 0.01
96 101 0.91
98 6 0.05
99 3 0.03
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACACATCGAGCTGATGCCATGTCCCAAAC
ATGGTCTTACACTAGCTCACATCTCATGGC
Found at i:75783778 original size:151 final size:151
Alignment explanation
Indices: 75783495--75783885 Score: 611
Period size: 151 Copynumber: 2.6 Consensus size: 151
75783485 CCGTTGTGAA
* * *
75783495 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACTAAATTGATAGGTCGCATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
* *
75783560 TAAGTGAAGGCTACTACACGTACCCGTTAACTTCGATCACGTGTGTAGTACTATGTGCAGGCTAC
66 TAAGTGAAGGCTACTATACGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
*
75783625 TACATGTATCAGAAGGTTAAG
131 TACATGTATCAGAAGGGTAAG
* *
75783646 TCACATGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
* * *
75783711 TAAGTGTAGGCTACTATGCGTACCCGTTAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCTAC
66 TAAGTGAAGGCTACTATACGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
* * *
75783776 TACGTGTGTCAGATGGGTAAG
131 TACATGTATCAGAAGGGTAAG
* * * *
75783797 TCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGTATGTATAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
*
75783862 TAAGTGCAGGCTACTATACGTACC
66 TAAGTGAAGGCTACTATACGTACC
75783886 AGACAGCTTC
Statistics
Matches: 218, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 218 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
TAAGTGAAGGCTACTATACGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
TACATGTATCAGAAGGGTAAG
Found at i:75783781 original size:28 final size:28
Alignment explanation
Indices: 75783749--75783832 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
75783739 AACTTTGATC
75783749 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
75783777 ACGTGTGTCAG-A-T--GGGTAAG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
75783799 ACGTGTGCAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
75783827 ACGTGT
1 ACGTGT
75783833 ACCAGATTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 1 0.02
25 8 0.20
26 1 0.02
27 2 0.05
28 15 0.37
29 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:75783835 original size:101 final size:100
Alignment explanation
Indices: 75783495--75783877 Score: 297
Period size: 101 Copynumber: 3.8 Consensus size: 100
75783485 CCGTTGTGAA
* * * * * * *
75783495 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACTA-AATTGATAGGTCGCATGTGTAATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAA-CGTTAAGTCACATGTGTAGTA
* * ** ** **
75783559 CTAAGTGAAGGCTACTACA-CGTACC-CGTTAACTTCG
65 CTAAGTGCAGGCTACTA-AGTGTACCAAATGGA-TAAG
* * * *
75783595 ATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCAGAAGGTTAAGTCACATGTGTAGTA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAACGTTAAGTCACATGTGTAGTA
* *
75783660 CTAAGTGCAGGCTACTAAGTGTACCAAATTGATAGG
65 CTAAGTGCAGGCTACTAAGTGTACCAAATGGATAAG
* * * * * * * * *
75783696 TCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTTGA-TCACGTGTGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG--AACGTTAAGTCACATGTGTAGT
* ** * *
75783760 ACTAAGTGCAGGCTACTACGTGTGTCAGATGGGTAAG
64 ACTAAGTGCAGGCTACTAAGTGTACCAAATGGATAAG
* ** * * ** *
75783797 TCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGTATGTATAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAACGTTAAGTCACATGTGTAGTAC
75783862 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
75783878 TACGTACCAG
Statistics
Matches: 222, Mismatches: 54, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
99 2 0.01
100 60 0.27
101 150 0.68
102 10 0.05
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAACGTTAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTAAGTGTACCAAATGGATAAG
Found at i:75783885 original size:50 final size:50
Alignment explanation
Indices: 75783504--75783888 Score: 308
Period size: 50 Copynumber: 7.7 Consensus size: 50
75783494 ATCACGTGTA
* * *
75783504 TAGTACTAAGTGCAGGCTACTACGTGTACTAAATTGATAGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
* * * * * * * * *
75783554 TAATACTAAGTGAAGGCTACTACACGTACCCG-TTAACTTCGATCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA--TAGGTCGCATGTG
* * ** * * *
75783605 TAGTACTATGTGCAGGCTACTACATGTATCAGAAGGTTAAGTCACATGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
*
75783655 TAGTACTAAGTGCAGGCTACTA-AGTGTACCAAATTGATAGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACA-TGTACCAGATTGATAGGTCGCATGTG
* *** * * * * * *
75783705 TAGTACTAAGTGTAGGCTACTATGCGTACCCG-TTAACTTTGATCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA--TAGGTCGCATGTG
* ** * * * * *
75783756 TAGTACTAAGTGCAGGCTACTACGTGTGTCAGATGGGTAAGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
* * * *
75783806 CAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGTATGTA
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
* *
75783856 TAGTACTAAGTGCAGGCTACTATACGTACCAGA
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGA
75783889 CAGCTTCGGT
Statistics
Matches: 257, Mismatches: 70, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
49 7 0.03
50 179 0.70
51 70 0.27
52 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
Found at i:75783968 original size:31 final size:31
Alignment explanation
Indices: 75783930--75783991 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
75783920 GGCCACCGGT
75783930 TATCTATTATTATTTCGATGAGTTCAACGGG
1 TATCTATTATTATTTCGATGAGTTCAACGGG
75783961 TATCTATTATTATTTCGATGAGTTCAACGGG
1 TATCTATTATTATTTCGATGAGTTCAACGGG
75783992 AAATTTACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (31 bp):
TATCTATTATTATTTCGATGAGTTCAACGGG
Found at i:75787439 original size:15 final size:15
Alignment explanation
Indices: 75787419--75787462 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
75787409 TATGATATTA
75787419 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
75787433 TTATCTTGGATTTCTC
1 -TATCTTGGATTTCTC
*
75787449 TATCTTGGACTTCT
1 TATCTTGGATTTCT
75787463 TAATCCTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.52
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:75787477 original size:30 final size:30
Alignment explanation
Indices: 75787419--75787477 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
75787409 TATGATATTA
* *
75787419 TATCTTGGATTTCCTTATCTTGGATTTCTC
1 TATCTTGGACTTCCTTATCCTGGATTTCTC
*
75787449 TATCTTGGACTT-CTTAATCCTGGTTTTCT
1 TATCTTGGACTTCCTT-ATCCTGGATTTCT
75787478 TGTTATCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.53
Consensus pattern (30 bp):
TATCTTGGACTTCCTTATCCTGGATTTCTC
Found at i:75790725 original size:151 final size:151
Alignment explanation
Indices: 75790442--75790832 Score: 611
Period size: 151 Copynumber: 2.6 Consensus size: 151
75790432 CCGTTGTGAA
* * *
75790442 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACTAAATTGATAGGTCGCATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
* *
75790507 TAAGTGAAGGCTACTACACGTACCCGTTAACTTCGATCACGTGTGTAGTACTATGTGCAGGCTAC
66 TAAGTGAAGGCTACTATACGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
*
75790572 TACATGTATCAGAAGGTTAAG
131 TACATGTATCAGAAGGGTAAG
* *
75790593 TCACATGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
* * *
75790658 TAAGTGTAGGCTACTATGCGTACCCGTTAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCTAC
66 TAAGTGAAGGCTACTATACGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
* * *
75790723 TACGTGTGTCAGATGGGTAAG
131 TACATGTATCAGAAGGGTAAG
* * * *
75790744 TCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGTATGTATAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
*
75790809 TAAGTGCAGGCTACTATACGTACC
66 TAAGTGAAGGCTACTATACGTACC
75790833 AGACAGCTTC
Statistics
Matches: 218, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 218 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTAC
TAAGTGAAGGCTACTATACGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
TACATGTATCAGAAGGGTAAG
Found at i:75790728 original size:28 final size:28
Alignment explanation
Indices: 75790696--75790779 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
75790686 AACTTTGATC
75790696 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
75790724 ACGTGTGTCAG-A-T--GGGTAAG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
75790746 ACGTGTGCAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
75790774 ACGTGT
1 ACGTGT
75790780 ACCAGATTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 1 0.02
25 8 0.20
26 1 0.02
27 2 0.05
28 15 0.37
29 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:75790782 original size:101 final size:100
Alignment explanation
Indices: 75790442--75790824 Score: 297
Period size: 101 Copynumber: 3.8 Consensus size: 100
75790432 CCGTTGTGAA
* * * * * * *
75790442 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACTA-AATTGATAGGTCGCATGTGTAATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAA-CGTTAAGTCACATGTGTAGTA
* * ** ** **
75790506 CTAAGTGAAGGCTACTACA-CGTACC-CGTTAACTTCG
65 CTAAGTGCAGGCTACTA-AGTGTACCAAATGGA-TAAG
* * * *
75790542 ATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCAGAAGGTTAAGTCACATGTGTAGTA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAACGTTAAGTCACATGTGTAGTA
* *
75790607 CTAAGTGCAGGCTACTAAGTGTACCAAATTGATAGG
65 CTAAGTGCAGGCTACTAAGTGTACCAAATGGATAAG
* * * * * * * * *
75790643 TCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTTGA-TCACGTGTGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG--AACGTTAAGTCACATGTGTAGT
* ** * *
75790707 ACTAAGTGCAGGCTACTACGTGTGTCAGATGGGTAAG
64 ACTAAGTGCAGGCTACTAAGTGTACCAAATGGATAAG
* ** * * ** *
75790744 TCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGTATGTATAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAACGTTAAGTCACATGTGTAGTAC
75790809 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
75790825 TACGTACCAG
Statistics
Matches: 222, Mismatches: 54, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
99 2 0.01
100 60 0.27
101 150 0.68
102 10 0.05
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAACGTTAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTAAGTGTACCAAATGGATAAG
Found at i:75790832 original size:50 final size:50
Alignment explanation
Indices: 75790451--75790835 Score: 308
Period size: 50 Copynumber: 7.7 Consensus size: 50
75790441 ATCACGTGTA
* * *
75790451 TAGTACTAAGTGCAGGCTACTACGTGTACTAAATTGATAGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
* * * * * * * * *
75790501 TAATACTAAGTGAAGGCTACTACACGTACCCG-TTAACTTCGATCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA--TAGGTCGCATGTG
* * ** * * *
75790552 TAGTACTATGTGCAGGCTACTACATGTATCAGAAGGTTAAGTCACATGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
*
75790602 TAGTACTAAGTGCAGGCTACTA-AGTGTACCAAATTGATAGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACA-TGTACCAGATTGATAGGTCGCATGTG
* *** * * * * * *
75790652 TAGTACTAAGTGTAGGCTACTATGCGTACCCG-TTAACTTTGATCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA--TAGGTCGCATGTG
* ** * * * * *
75790703 TAGTACTAAGTGCAGGCTACTACGTGTGTCAGATGGGTAAGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
* * * *
75790753 CAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGTATGTA
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
* *
75790803 TAGTACTAAGTGCAGGCTACTATACGTACCAGA
1 TAGTACTAAGTGCAGGCTACTACATGTACCAGA
75790836 CAGCTTCGGT
Statistics
Matches: 257, Mismatches: 70, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
49 7 0.03
50 179 0.70
51 70 0.27
52 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTG
Found at i:75790915 original size:31 final size:31
Alignment explanation
Indices: 75790877--75790938 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
75790867 GGCCACCGGT
75790877 TATCTATTATTATTTCGATGAGTTCAACGGG
1 TATCTATTATTATTTCGATGAGTTCAACGGG
75790908 TATCTATTATTATTTCGATGAGTTCAACGGG
1 TATCTATTATTATTTCGATGAGTTCAACGGG
75790939 AAATTTACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (31 bp):
TATCTATTATTATTTCGATGAGTTCAACGGG
Found at i:75794055 original size:54 final size:52
Alignment explanation
Indices: 75793921--75794176 Score: 212
Period size: 54 Copynumber: 4.8 Consensus size: 52
75793911 GTAGGCTAGT
* ** * * * * *
75793921 ATTACTAAAATACCAATAGTTTACAAAATTA-CTAAATACCCTCGATTAGCAAA
1 ATTACCAAAATACCCCTAATTTATAAAATTACCAAAATACCCT-GATTTG-GAA
* * ** *
75793974 ATTA-CTAAATACCCTTTGTTTGTAAAATTACCAAAATACCTCTGATTTGTGAA
1 ATTACCAAAATACCCCTAATTTATAAAATTACCAAAATACC-CTGATTTG-GAA
* * * * *
75794027 ATTACCGAAATACCCCCAATTTTTAAAATTACCAAAATACCCCTAATTTGAAA
1 ATTACCAAAATACCCCTAATTTATAAAATTACCAAAATA-CCCTGATTTGGAA
*
75794080 ATTTACCAAAATAACCCTAATTTGA-AAAATTACCAAAATACCCTTGATTTGGAA
1 A-TTACCAAAATACCCCTAATTT-ATAAAATTACCAAAATACCC-TGATTTGGAA
* * * *
75794134 ATTACAAAAATACCCCTAATTTACAAATTTACAAAAATACCCT
1 ATTACCAAAATACCCCTAATTTATAAAATTACCAAAATACCCT
75794177 TAACTTTCAA
Statistics
Matches: 166, Mismatches: 29, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
52 21 0.13
53 64 0.39
54 79 0.48
55 2 0.01
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.30
Consensus pattern (52 bp):
ATTACCAAAATACCCCTAATTTATAAAATTACCAAAATACCCTGATTTGGAA
Found at i:75794234 original size:27 final size:27
Alignment explanation
Indices: 75793945--75794260 Score: 189
Period size: 27 Copynumber: 11.8 Consensus size: 27
75793935 AATAGTTTAC
* ** * *
75793945 AAAATTA-CTAAATACCCTCGATTAGC
1 AAAATTACCAAAATACCCTTAATTTGT
* **
75793971 AAAATTA-CTAAATACCCTTTGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
*
75793997 AAAATTACCAAAATA-CCTCTGATTTGT
1 AAAATTACCAAAATACCCT-TAATTTGT
* * ** *
75794024 GAAATTACCGAAATACCCCCAATTTTT
1 AAAATTACCAAAATACCCTTAATTTGT
*
75794051 AAAATTACCAAAATACCCCTAATTTG-
1 AAAATTACCAAAATACCCTTAATTTGT
*
75794077 AAAATTTACCAAAATAACCC-TAATTTGA
1 AAAA-TTACCAAAAT-ACCCTTAATTTGT
*
75794105 AAAATTACCAAAATACCCTTGATTTG-
1 AAAATTACCAAAATACCCTTAATTTGT
* * * **
75794131 GAAATTACAAAAATACCCCTAATTTAC
1 AAAATTACCAAAATACCCTTAATTTGT
* * *
75794158 AAATTTACAAAAATACCCTTAACTTT-C
1 AAAATTACCAAAATACCCTTAA-TTTGT
* * **
75794185 AAAATTTA-TAGAAATACCATTGGTTTGT
1 AAAA-TTACCA-AAATACCCTTAATTTGT
** **
75794213 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* * * *
75794240 AGATTTGCCAAAACACCCTTA
1 AAAATTACCAAAATACCCTTA
75794261 TAGGGTGAAA
Statistics
Matches: 235, Mismatches: 42, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
26 60 0.26
27 145 0.62
28 30 0.13
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAATTTGT
Found at i:75794559 original size:41 final size:41
Alignment explanation
Indices: 75794497--75794603 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 41
75794487 CGGAGGAAGA
* * * *
75794497 AATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACC
1 AATTGAGAATCGCATGATTGCTTGACAACCGTGGATCCACC
*
75794538 AATTGAGAATCGTATGATTGCTTGACAACCGTGGATCCACC
1 AATTGAGAATCGCATGATTGCTTGACAACCGTGGATCCACC
* * *
75794579 GATT-AAAGATCGCATGGTTGCTTGA
1 AATTGAGA-ATCGCATGATTGCTTGA
75794604 TGACTGTGGA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 2 0.04
41 54 0.96
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (41 bp):
AATTGAGAATCGCATGATTGCTTGACAACCGTGGATCCACC
Found at i:75794613 original size:41 final size:40
Alignment explanation
Indices: 75794504--75794618 Score: 124
Period size: 41 Copynumber: 2.8 Consensus size: 40
75794494 AGAAATTGAG
*
75794504 GATCGCATGGTTGCTTGACGA-TCGTGGATCCACCAATTGA
1 GATCGCATGGTTGCTTGACGACT-GTGGATCCACCAATTAA
* * * * *
75794544 GAATCGTATGATTGCTTGACAACCGTGGATCCACCGATTAAA
1 G-ATCGCATGGTTGCTTGACGACTGTGGATCCACCAATT-AA
* *
75794586 GATCGCATGGTTGCTTGATGACTGTGGACCCAC
1 GATCGCATGGTTGCTTGACGACTGTGGATCCAC
75794619 TAGTGGCTTT
Statistics
Matches: 60, Mismatches: 12, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
40 1 0.02
41 57 0.95
42 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
GATCGCATGGTTGCTTGACGACTGTGGATCCACCAATTAA
Found at i:75794837 original size:25 final size:25
Alignment explanation
Indices: 75794761--75794846 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 25
75794751 AGCTAATTAT
75794761 TCTGTTATCGATGGCTTTGTGCCGA
1 TCTGTTATCGATGGCTTTGTGCCGA
* * * * *
75794786 TATGATATTGATGGCTATGTGTCGA
1 TCTGTTATCGATGGCTTTGTGCCGA
*
75794811 TCTGTTATCGATGGCTTTGTACCGA
1 TCTGTTATCGATGGCTTTGTGCCGA
*
75794836 TCGTATTATCG
1 TC-TGTTATCG
75794847 TAATAATGGC
Statistics
Matches: 48, Mismatches: 12, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
25 41 0.85
26 7 0.15
ACGTcount: A:0.17, C:0.16, G:0.26, T:0.41
Consensus pattern (25 bp):
TCTGTTATCGATGGCTTTGTGCCGA
Found at i:75808320 original size:56 final size:56
Alignment explanation
Indices: 75808234--75808344 Score: 195
Period size: 56 Copynumber: 2.0 Consensus size: 56
75808224 GACTGAGTTT
* * *
75808234 GTATCACGAGTCAACCGGTTACCAATTCAATTAGAGAAATTATGAAAATGTCATTG
1 GTATCACGAGTCAACCGGTCACCAATTCAATTAAAGAAATTACGAAAATGTCATTG
75808290 GTATCACGAGTCAACCGGTCACCAATTCAATTAAAGAAATTACGAAAATGTCATT
1 GTATCACGAGTCAACCGGTCACCAATTCAATTAAAGAAATTACGAAAATGTCATT
75808345 CTATAATTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (56 bp):
GTATCACGAGTCAACCGGTCACCAATTCAATTAAAGAAATTACGAAAATGTCATTG
Found at i:75809016 original size:11 final size:10
Alignment explanation
Indices: 75808994--75809023 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
75808984 CTTTTCAATT
75808994 TTTATTTGTA
1 TTTATTTGTA
75809004 TTTATTATGTA
1 TTTATT-TGTA
75809015 TTTATTTGT
1 TTTATTTGT
75809024 TGGCTTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (10 bp):
TTTATTTGTA
Found at i:75809355 original size:56 final size:56
Alignment explanation
Indices: 75809269--75809379 Score: 195
Period size: 56 Copynumber: 2.0 Consensus size: 56
75809259 TTAATTATAG
* * *
75809269 AATGACATTTTCGTAATTTCTTTAATTGAATTGGTGACCGGTTGACTCGTGATACC
1 AATGACATTTTCATAATTTCTCTAATTGAATTGGTAACCGGTTGACTCGTGATACC
75809325 AATGACATTTTCATAATTTCTCTAATTGAATTGGTAACCGGTTGACTCGTGATAC
1 AATGACATTTTCATAATTTCTCTAATTGAATTGGTAACCGGTTGACTCGTGATAC
75809380 AAACTCAGTC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (56 bp):
AATGACATTTTCATAATTTCTCTAATTGAATTGGTAACCGGTTGACTCGTGATACC
Found at i:75814031 original size:18 final size:18
Alignment explanation
Indices: 75814008--75814046 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
75813998 AACAAAATTT
75814008 TGCATGAAGATACATTCC
1 TGCATGAAGATACATTCC
75814026 TGCATGAAGATACATTCC
1 TGCATGAAGATACATTCC
75814044 TGC
1 TGC
75814047 TCCTGGCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (18 bp):
TGCATGAAGATACATTCC
Found at i:75819946 original size:20 final size:20
Alignment explanation
Indices: 75819917--75819968 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
75819907 TTTACTAAAA
75819917 TTCT-TTTAATATAAAATTC
1 TTCTATTTAATATAAAATTC
* ***
75819936 TTTTATTTAATATTTTATTC
1 TTCTATTTAATATAAAATTC
75819956 TTCTATTTAATAT
1 TTCTATTTAATAT
75819969 TTTTTTATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (20 bp):
TTCTATTTAATATAAAATTC
Found at i:75819977 original size:23 final size:20
Alignment explanation
Indices: 75819932--75819971 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
75819922 TTAATATAAA
*
75819932 ATTCTTTTATTTAATATTTT
1 ATTCTTCTATTTAATATTTT
75819952 ATTCTTCTATTTAATATTTT
1 ATTCTTCTATTTAATATTTT
75819972 TTTATTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTCTTCTATTTAATATTTT
Found at i:75823654 original size:42 final size:42
Alignment explanation
Indices: 75823535--75823654 Score: 118
Period size: 42 Copynumber: 2.9 Consensus size: 42
75823525 AGCTCGTACA
* * *
75823535 ATGCCAAC-ATCCTAGACGTGGTGTTACATGTAATAAAAAACG
1 ATGCC-ACTATCCTAGACATGGTCTTACATGTAATCAAAAACG
* * * * *
75823577 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATACG
1 ATGCCACTATCCTAGACATGGTCTTACATGTAATCAAAAACG
* *
75823619 ATGCCGA-TATCCTAGACATAGTCTTACACGTAATCA
1 ATGCC-ACTATCCTAGACATGGTCTTACATGTAATCA
75823655 TAAGTCGATG
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
41 2 0.03
42 59 0.95
43 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCACTATCCTAGACATGGTCTTACATGTAATCAAAAACG
Found at i:75825094 original size:47 final size:47
Alignment explanation
Indices: 75825041--75825262 Score: 207
Period size: 47 Copynumber: 4.6 Consensus size: 47
75825031 CGAATAATAC
* * *
75825041 CTTGATTTGGCTACGGGCAATGATATAGGTA-TTATGAGAGGATTTAT
1 CTTGATTTGGCTACGGGCCATGGTATAGGTACTT-TGAGAGAATTTAT
* * *
75825088 CTTGATTTGGTTACGGGCCATGGTATAGGTACTTTGGGATAAGTTAATAAT
1 CTTGATTTGGCTACGGGCCATGGTATAGGTACTTTGAGAGAA-TT--T-AT
* * *
75825139 ACCTTGATTTGGCTACGGGCAATGATATAGGTA-TTATGAGAGGATTTA-
1 --CTTGATTTGGCTACGGGCCATGGTATAGGTACTT-TGAGAGAATTTAT
* * * * * *
75825187 CTTTGATTTGGTTACAGGCCATGGTATAGGTACTTTGGGATAAGTTAC
1 C-TTGATTTGGCTACGGGCCATGGTATAGGTACTTTGAGAGAATTTAT
75825235 CTTGATTTGGCTACGGGCCATGGTATAG
1 CTTGATTTGGCTACGGGCCATGGTATAG
75825263 TTGCTTATCG
Statistics
Matches: 142, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
46 1 0.01
47 92 0.65
48 7 0.05
49 1 0.01
50 2 0.01
51 2 0.01
52 4 0.03
53 33 0.23
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.36
Consensus pattern (47 bp):
CTTGATTTGGCTACGGGCCATGGTATAGGTACTTTGAGAGAATTTAT
Found at i:75825148 original size:100 final size:100
Alignment explanation
Indices: 75825033--75825233 Score: 377
Period size: 100 Copynumber: 2.0 Consensus size: 100
75825023 TTCGTGTGCG
75825033 AATAATACCTTGATTTGGCTACGGGCAATGATATAGGTATTATGAGAGGATTTA-TCTTGATTTG
1 AATAATACCTTGATTTGGCTACGGGCAATGATATAGGTATTATGAGAGGATTTACT-TTGATTTG
*
75825097 GTTACGGGCCATGGTATAGGTACTTTGGGATAAGTT
65 GTTACAGGCCATGGTATAGGTACTTTGGGATAAGTT
75825133 AATAATACCTTGATTTGGCTACGGGCAATGATATAGGTATTATGAGAGGATTTACTTTGATTTGG
1 AATAATACCTTGATTTGGCTACGGGCAATGATATAGGTATTATGAGAGGATTTACTTTGATTTGG
75825198 TTACAGGCCATGGTATAGGTACTTTGGGATAAGTT
66 TTACAGGCCATGGTATAGGTACTTTGGGATAAGTT
75825233 A
1 A
75825234 CCTTGATTTG
Statistics
Matches: 99, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
100 98 0.99
101 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (100 bp):
AATAATACCTTGATTTGGCTACGGGCAATGATATAGGTATTATGAGAGGATTTACTTTGATTTGG
TTACAGGCCATGGTATAGGTACTTTGGGATAAGTT
Found at i:75832431 original size:19 final size:19
Alignment explanation
Indices: 75832409--75832468 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
75832399 AGTCTGAAGG
75832409 AAGTACACGAGTCATTCTC
1 AAGTACACGAGTCATTCTC
* * * *
75832428 AAGTA-AAG-GACCTGT-TG
1 AAGTACACGAGTCAT-TCTC
75832445 AAGTACACGAGTCATTCTC
1 AAGTACACGAGTCATTCTC
75832464 AAGTA
1 AAGTA
75832469 AAGGACCTGT
Statistics
Matches: 29, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
17 9 0.31
18 6 0.21
19 14 0.48
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (19 bp):
AAGTACACGAGTCATTCTC
Found at i:75832454 original size:36 final size:36
Alignment explanation
Indices: 75832408--75832479 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
75832398 AAGTCTGAAG
75832408 GAAGTACACGAGTCATTCTCAAGTAAAGGACCTGTT
1 GAAGTACACGAGTCATTCTCAAGTAAAGGACCTGTT
75832444 GAAGTACACGAGTCATTCTCAAGTAAAGGACCTGTT
1 GAAGTACACGAGTCATTCTCAAGTAAAGGACCTGTT
75832480 CATAAAGATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (36 bp):
GAAGTACACGAGTCATTCTCAAGTAAAGGACCTGTT
Found at i:75833214 original size:55 final size:55
Alignment explanation
Indices: 75833109--75833235 Score: 141
Period size: 55 Copynumber: 2.3 Consensus size: 55
75833099 CGAGTATGCC
* *
75833109 AAAACAACACGGGCGTGCGACACTCCCGTGTGGAAGAACCATGGGTGAACC-GTTT
1 AAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACCATGGGTGAACCTG-TT
* * * * *
75833164 AAAACAACACGGGTGTGCTATACGCCCGTGTGGAACACCCGT-GGTCGAACCTGTT
1 AAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACCATGGGT-GAACCTGTT
**
75833219 AAATTAACACGGGCGTG
1 AAAACAACACGGGCGTG
75833236 GAGCTTGCAT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 3 0.05
55 56 0.93
56 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.18
Consensus pattern (55 bp):
AAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACCATGGGTGAACCTGTT
Found at i:75842227 original size:11 final size:11
Alignment explanation
Indices: 75842206--75842230 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
75842196 TTCATTTTCC
75842206 TTTAATTTTAG
1 TTTAATTTTAG
75842217 TTTAATTTTAG
1 TTTAATTTTAG
75842228 TTT
1 TTT
75842231 TTACAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTAATTTTAG
Found at i:75845976 original size:12 final size:12
Alignment explanation
Indices: 75845959--75845984 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75845949 ATAAACACCA
75845959 AAAATATTTTTT
1 AAAATATTTTTT
75845971 AAAATATTTTTT
1 AAAATATTTTTT
75845983 AA
1 AA
75845985 CTCGGATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
AAAATATTTTTT
Found at i:75848039 original size:13 final size:13
Alignment explanation
Indices: 75848021--75848047 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75848011 TACATCCACT
75848021 AGACTAGGAGTAC
1 AGACTAGGAGTAC
75848034 AGACTAGGAGTAC
1 AGACTAGGAGTAC
75848047 A
1 A
75848048 TGAACCAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.30, T:0.15
Consensus pattern (13 bp):
AGACTAGGAGTAC
Done.