Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 228 of 276
Found at i:75849970 original size:46 final size:46
Alignment explanation
Indices: 75849914--75850086 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
75849904 TGGTTGAGCA
*
75849914 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
75849960 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
75850007 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
75850053 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75850087 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:75850070 original size:93 final size:93
Alignment explanation
Indices: 75849911--75850081 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
75849901 GGATGGTTGA
* * *
75849911 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
75849976 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
75850004 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
75850069 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75850082 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75854483 original size:11 final size:11
Alignment explanation
Indices: 75854467--75854505 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
75854457 TGGCTTTTAA
*
75854467 TAAAATTATGT
1 TAAAATTATAT
75854478 TAAAATTATAT
1 TAAAATTATAT
*
75854489 TATAATTATAAT
1 TAAAATTAT-AT
75854501 TAAAA
1 TAAAA
75854506 ATAATAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 18 0.75
12 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (11 bp):
TAAAATTATAT
Found at i:75855703 original size:21 final size:20
Alignment explanation
Indices: 75855677--75855716 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
75855667 GTTAGATTTA
*
75855677 ATTTGAATGAAGTAAATGTTT
1 ATTTG-ATGAAATAAATGTTT
*
75855698 ATTTGATTAAATAAATGTT
1 ATTTGATGAAATAAATGTT
75855717 ATAAATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (20 bp):
ATTTGATGAAATAAATGTTT
Found at i:75864718 original size:29 final size:29
Alignment explanation
Indices: 75864655--75864761 Score: 128
Period size: 29 Copynumber: 3.7 Consensus size: 29
75864645 TTCACATACC
* * *
75864655 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
75864683 T-TCATATAGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
75864712 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
75864741 TTTATATGGCCCGTTAGGCCC
1 TGTATATGGCCCATTAGGCCC
75864762 GGTCACATTC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.24
29 49 0.73
30 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:75864722 original size:57 final size:58
Alignment explanation
Indices: 75864652--75864761 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 58
75864642 AATTTCACAT
* *
75864652 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATAGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCAAATC
* * * *
75864709 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCC
75864762 GGTCACATTC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.26
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCAAATC
Found at i:75866146 original size:16 final size:16
Alignment explanation
Indices: 75866125--75866157 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
75866115 GAAAATTCAA
*
75866125 GATTTCGGGATTTTTG
1 GATTTCGAGATTTTTG
75866141 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
75866157 G
1 G
75866158 GGCGTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:75872377 original size:29 final size:28
Alignment explanation
Indices: 75872292--75872405 Score: 79
Period size: 29 Copynumber: 4.0 Consensus size: 28
75872282 TACCTGTATC
* * * *
75872292 TGGCCCACTAAGCCCAATCATATTCAT-
1 TGGCCCATTAGGCCCAACCACATTCATA
* * * *
75872319 TGGTCCATTAGGCCAAAATCACCTAT-ATA
1 TGGCCCATTAGGCC-CAACCACAT-TCATA
*
75872348 TGGCCTATTAGGCCCAAACCACATTCATA
1 TGGCCCATTAGGCCC-AACCACATTCATA
* **
75872377 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAACCACATTCATA
75872405 T
1 T
75872406 TCATGCTCAT
Statistics
Matches: 67, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
27 11 0.16
28 21 0.31
29 35 0.52
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAACCACATTCATA
Found at i:75872636 original size:16 final size:16
Alignment explanation
Indices: 75872615--75872658 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
75872605 GTAGCCAAAC
*
75872615 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
*
75872631 TTTCAGCTTTTCGACT
1 TTTCAGCTTTTCGACA
*
75872647 TTTCAGCATTTC
1 TTTCAGCTTTTC
75872659 AATTTTTGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.48
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:75873672 original size:20 final size:20
Alignment explanation
Indices: 75873647--75873687 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
75873637 TCCTTTAATA
75873647 ATTAAATTATAATTTCTTCT
1 ATTAAATTATAATTTCTTCT
75873667 ATTAAATTATAATTTCTTCT
1 ATTAAATTATAATTTCTTCT
75873687 A
1 A
75873688 CCCCTTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTAAATTATAATTTCTTCT
Found at i:75873813 original size:16 final size:16
Alignment explanation
Indices: 75873787--75873828 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
75873777 ATAAAGAAAC
75873787 TTTGAGATTTCGGGATT
1 TTTG-GATTTCGGGATT
75873804 TTTGGATTTCGGGATT
1 TTTGGATTTCGGGATT
75873820 TTTGGATTT
1 TTTGGATTT
75873829 TGAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 21 0.84
17 4 0.16
ACGTcount: A:0.14, C:0.05, G:0.29, T:0.52
Consensus pattern (16 bp):
TTTGGATTTCGGGATT
Found at i:75880969 original size:23 final size:23
Alignment explanation
Indices: 75880942--75880986 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
75880932 AGACGAGCTT
*
75880942 AATGAATAAGTATGACCTAGTTA
1 AATGAACAAGTATGACCTAGTTA
*
75880965 AATGAACAAGTATGAGCTAGTT
1 AATGAACAAGTATGACCTAGTT
75880987 GATTTCCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (23 bp):
AATGAACAAGTATGACCTAGTTA
Found at i:75891479 original size:27 final size:28
Alignment explanation
Indices: 75891434--75891491 Score: 109
Period size: 27 Copynumber: 2.1 Consensus size: 28
75891424 TTCATGCAGC
75891434 ATTCCATTTTTTTCTCTTCCTCACAACT
1 ATTCCATTTTTTTCTCTTCCTCACAACT
75891462 ATTCCATTTTTTT-TCTTCCTCACAACT
1 ATTCCATTTTTTTCTCTTCCTCACAACT
75891489 ATT
1 ATT
75891492 AACATGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 17 0.57
28 13 0.43
ACGTcount: A:0.19, C:0.29, G:0.00, T:0.52
Consensus pattern (28 bp):
ATTCCATTTTTTTCTCTTCCTCACAACT
Found at i:75891992 original size:19 final size:17
Alignment explanation
Indices: 75891945--75891992 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
75891935 ATTCAAATGC
*
75891945 ATATAAATTTATATATT
1 ATATAAATATATATATT
75891962 ATATAGACATATATATATT
1 ATATA-A-ATATATATATT
75891981 CATTATAAATAT
1 -A-TATAAATAT
75891993 CACCTAACCG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.19
18 1 0.04
19 14 0.54
20 2 0.08
21 4 0.15
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (17 bp):
ATATAAATATATATATT
Found at i:75892482 original size:43 final size:43
Alignment explanation
Indices: 75892416--75892501 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
75892406 AAATCGTACA
** *
75892416 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACGTCCCAGACAAGGTCTTAC-TCGTAAACACATATCG
75892459 ATGCC-ACTGTCCCAGACAAGGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGACAAGGTCTTACTCGTAAACACATATCG
75892502 GAATCACATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.08
43 35 0.92
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAAGGTCTTACTCGTAAACACATATCG
Found at i:75896708 original size:39 final size:40
Alignment explanation
Indices: 75896665--75896834 Score: 252
Period size: 40 Copynumber: 4.3 Consensus size: 40
75896655 TCCTCGTTCA
* * * *
75896665 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
75896704 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
75896744 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
75896784 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
75896824 AATGCCTTCGG
1 AATGCCTTCGG
75896835 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 35 0.29
40 87 0.71
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:75896763 original size:40 final size:39
Alignment explanation
Indices: 75896665--75896887 Score: 250
Period size: 40 Copynumber: 5.6 Consensus size: 39
75896655 TCCTCGTTCA
* * * * *
75896665 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
75896704 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
75896743 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
75896783 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
** * * * *
75896823 AAATGCCTTC-GGATCTTAGTCCGGATGTATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
75896864 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
75896888 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 38 0.23
40 117 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:75896887 original size:120 final size:119
Alignment explanation
Indices: 75896665--75896887 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 119
75896655 TCCTCGTTCA
* * *
75896665 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATG
* *
75896730 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * **
75896784 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AATGCCTTCGGGA-CATAACCCGGA
* * *
75896848 TGTATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TGTAATAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
75896888 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.43
120 45 0.52
121 5 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATG
TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:75896896 original size:41 final size:41
Alignment explanation
Indices: 75896819--75896896 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75896809 TTAGTATCTC
* * *
75896819 GCACAAATGCCTTCGGATCTTAGTCCGGATGTATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGAAGCATTCACTTA
75896860 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGA-AGCATTCA
75896897 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 16 0.50
41 16 0.50
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGAAGCATTCACTTA
Found at i:75908571 original size:6 final size:6
Alignment explanation
Indices: 75908556--75908700 Score: 129
Period size: 6 Copynumber: 23.8 Consensus size: 6
75908546 AACCAAAATG
* * *
75908556 AGAATC AGAATT AGAATC AGTAA-C TGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
75908604 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
75908653 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAAT
75908701 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 14, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
5 7 0.06
6 96 0.85
7 7 0.06
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:75908659 original size:37 final size:37
Alignment explanation
Indices: 75908609--75908700 Score: 175
Period size: 37 Copynumber: 2.5 Consensus size: 37
75908599 ATATTAGTAA
*
75908609 CAGAATCAGAATCAGAATCAGAATTAGGTGACAGAAT
1 CAGAATCAGAATCAGAATCAGAATTACGTGACAGAAT
75908646 CAGAATCAGAATCAGAATCAGAATTACGTGACAGAAT
1 CAGAATCAGAATCAGAATCAGAATTACGTGACAGAAT
75908683 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
75908701 GTGAATGCAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGAATTACGTGACAGAAT
Found at i:75909104 original size:22 final size:22
Alignment explanation
Indices: 75909056--75909114 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
75909046 GTAAATACGT
* *
75909056 TTGGCACGAAGCCATAGTCATG
1 TTGGCACAAAGCCATAGTCAGG
* * *
75909078 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAGG
*
75909100 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
75909115 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAGG
Found at i:75909281 original size:27 final size:26
Alignment explanation
Indices: 75909202--75909284 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
75909192 TCGATCGGTC
* * *
75909202 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
75909228 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
75909255 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
75909282 AAC
1 AAC
75909285 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:75909513 original size:27 final size:27
Alignment explanation
Indices: 75909483--75909678 Score: 214
Period size: 27 Copynumber: 7.3 Consensus size: 27
75909473 GGGGCAAAAT
* * *
75909483 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTATAAGGGTATTTC
*
75909510 GGTAATTCTACCCTA-CAGGAGTATTTC
1 GGTAATTCTACCCTATAAGG-GTATTTC
* * *
75909537 GGTATTTCTACCCTACAAGTGTATTTC
1 GGTAATTCTACCCTATAAGGGTATTTC
* * *
75909564 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTATAAGGGTATTTC
*
75909591 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTATAAGGGTATTTC
* *
75909618 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTATAAGGGTATTTC
** * *
75909645 GAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTATAAGGGTATTTC
*
75909672 AGTAATT
1 GGTAATT
75909679 TCACAATCAA
Statistics
Matches: 140, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 3 0.02
27 135 0.96
28 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTATAAGGGTATTTC
Found at i:75909627 original size:81 final size:81
Alignment explanation
Indices: 75909485--75909678 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 81
75909475 GGCAAAATGG
* * * * * * *
75909485 TAATTTTACCCCATAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTAAAGGAGTATTTCAGTAATTCTACCC
*
75909550 TACAAGTGTATTTCGA
66 TACAAGGGTATTTCGA
* *
75909566 TAATTCTACCCTATAGGGGTATTTTGGTAATTCTATCCTATAAGG-GTATTTCAGTAATTCTACC
1 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTA-AAGGAGTATTTCAGTAATTCTACC
* *
75909630 CTATAGGGGTATTTCGA
65 CTACAAGGGTATTTCGA
* * *
75909647 AAATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTATAGGGGTATTTCGGTAATT
75909679 TCACAATCAA
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 93 0.97
82 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTAAAGGAGTATTTCAGTAATTCTACCC
TACAAGGGTATTTCGA
Found at i:75909713 original size:27 final size:27
Alignment explanation
Indices: 75909683--75910254 Score: 643
Period size: 27 Copynumber: 21.2 Consensus size: 27
75909673 GTAATTTCAC
* *
75909683 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
75909710 AATCAAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
75909737 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
75909764 AATCAAGGGTAAAATGGTAA-TCT-TA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
75909789 CGAATCGAGGGTAAAACGGTAATTCTATA
1 --AATCGAGGGTAAAACGGTAATTCTGTA
**
75909818 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
75909845 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * *
75909872 AATGGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
75909899 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
75909926 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
75909953 AATCGATGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
75909980 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
75910007 AA-CTAAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
75910034 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
75910061 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * **
75910088 AATCGATGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
75910115 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
75910142 AA-CTGAGGGTAAAACGTTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
75910169 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
75910196 AATAGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
75910223 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
75910250 AATCG
1 AATCG
75910255 GGAGTACTTT
Statistics
Matches: 458, Mismatches: 75, Indels: 24
0.82 0.13 0.04
Matches are distributed among these distances:
25 2 0.00
26 6 0.01
27 442 0.97
28 6 0.01
29 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:75913138 original size:28 final size:28
Alignment explanation
Indices: 75913107--75913195 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 28
75913097 AACTATCAGA
75913107 AAACGAAATAGGGGTGAATTTAAAGAAT
1 AAACGAAATAGGGGTGAATTTAAAGAAT
* * * *
75913135 AAACTGTAAGAGGGGTTGGAACTGT-CAG-A-
1 AAAC-GAAATAGGGG-T-GAA-TTTAAAGAAT
75913164 AAACGAAATAGGGGTGAATTTAAAGAAT
1 AAACGAAATAGGGGTGAATTTAAAGAAT
75913192 AAAC
1 AAAC
75913196 TGTACTTATT
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
25 2 0.04
26 5 0.11
27 2 0.04
28 16 0.35
29 12 0.26
30 2 0.04
31 5 0.11
32 2 0.04
ACGTcount: A:0.46, C:0.07, G:0.27, T:0.20
Consensus pattern (28 bp):
AAACGAAATAGGGGTGAATTTAAAGAAT
Found at i:75913154 original size:57 final size:57
Alignment explanation
Indices: 75913085--75913199 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
75913075 ATTGTTAGTG
75913085 AAGAGGGGTTGGAACTATCAGAAAACGAAATAGGGGTGAATTTAAAGAATAAACTGT
1 AAGAGGGGTTGGAACTATCAGAAAACGAAATAGGGGTGAATTTAAAGAATAAACTGT
*
75913142 AAGAGGGGTTGGAACTGTCAGAAAACGAAATAGGGGTGAATTTAAAGAATAAACTGT
1 AAGAGGGGTTGGAACTATCAGAAAACGAAATAGGGGTGAATTTAAAGAATAAACTGT
75913199 A
1 A
75913200 CTTATTGGCT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21
Consensus pattern (57 bp):
AAGAGGGGTTGGAACTATCAGAAAACGAAATAGGGGTGAATTTAAAGAATAAACTGT
Found at i:75919319 original size:33 final size:33
Alignment explanation
Indices: 75919255--75919323 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
75919245 TTTTGAGTAC
75919255 TTAGATTAATAAAATGATTAAATTCGTGAATTT
1 TTAGATTAATAAAATGATTAAATTCGTGAATTT
*
75919288 TTAGATTAATAAAATTATTAAATTCGTGAATTT
1 TTAGATTAATAAAATGATTAAATTCGTGAATTT
75919321 TTA
1 TTA
75919324 TCATTACAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (33 bp):
TTAGATTAATAAAATGATTAAATTCGTGAATTT
Found at i:75919672 original size:47 final size:47
Alignment explanation
Indices: 75919602--75919868 Score: 207
Period size: 47 Copynumber: 5.7 Consensus size: 47
75919592 TTTGTGTGCT
75919602 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCAAATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCAAATTATGAGAGTC
*
75919648 AATGTAAGACCATGTCTGGGACATGACATCGG-C--ATTGA-GACAAGAG-C
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGCCAAATT-ATG---AGAGTC
* * * * * *
75919695 TAGT-TCAGA-CATGACTGGGACATGCATCGGCTACATGAT-A-TGTC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCCAAATTATGAGAGTC
*
75919739 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-TACGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CAAATTA--TGAGAGTC
* * ** * *
75919789 AGTGTAAGACCATGTCTGGGACAAGGCATCGACTTAA-CATGAGAGCC
1 AGTGTAAGACCATGTCTGGGAC-ATGCATCGGCCAAATTATGAGAGTC
*
75919836 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
75919869 ATTATACCCT
Statistics
Matches: 176, Mismatches: 23, Indels: 43
0.73 0.10 0.18
Matches are distributed among these distances:
43 4 0.02
44 6 0.03
45 23 0.13
46 33 0.19
47 59 0.34
48 15 0.09
49 3 0.02
50 32 0.18
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCAAATTATGAGAGTC
Found at i:75919769 original size:91 final size:92
Alignment explanation
Indices: 75919599--75919871 Score: 291
Period size: 91 Copynumber: 2.9 Consensus size: 92
75919589 ATATTTGTGT
* * * *
75919599 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAAATTATGAGAGTCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-TA-CATGATAGTCAGTGTAAGACCATGTC
*
75919664 TGGGACATGACATCGGCATTGAGAC-AAGA
63 TGGGACATGGCATCGGCATTGAGACGAAGA
* *
75919693 GCTAGT-TCAGACATGACTGGGACATGCATCGGCTACATGATATGTCAGTGTAAGACCATGTCTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGATA-GTCAGTGTAAGACCATGTCTG
** * *
75919757 GGACATGGCATCGGCACAGATACGTGAGA
65 GGACATGGCATCGGCATTGAGACG-AAGA
* * * *
75919786 G-TCAGTGTAAGACCATGTCTGGGACAAGGCATCGACTTAACATGAGAGCCAGTGTAAGACCATG
1 GCT-AGTGTAAGA-CATGTCTGGGAC-ATGCATCGGC-T-ACATGATAGTCAGTGTAAGACCATG
*
75919850 TCTAGGACATGGCATCGGCATT
61 TCTGGGACATGGCATCGGCATT
75919872 ATACCCTATG
Statistics
Matches: 150, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
90 5 0.03
91 40 0.27
92 2 0.01
93 31 0.21
94 10 0.07
95 11 0.07
96 8 0.05
97 36 0.24
98 7 0.05
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGATAGTCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATTGAGACGAAGA
Found at i:75920874 original size:30 final size:27
Alignment explanation
Indices: 75920830--75920885 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 27
75920820 CAAGGTTTTT
75920830 AGACACGGGTGTGTCATGGCCATGTGAG
1 AGACACGGGTGTGTCA-GGCCATGTGAG
*
75920858 AGACACGGGCGTGTGTCAGGCCGTGTGA
1 AGACAC-GG-GTGTGTCAGGCCATGTGA
75920886 AAACCTGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 6 0.24
29 11 0.44
30 8 0.32
ACGTcount: A:0.20, C:0.20, G:0.41, T:0.20
Consensus pattern (27 bp):
AGACACGGGTGTGTCAGGCCATGTGAG
Found at i:75921034 original size:21 final size:20
Alignment explanation
Indices: 75921005--75921043 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
75920995 TCATAATGAA
*
75921005 CACACGGGCGTGTTGCCCTTT
1 CACACGGGCATG-TGCCCTTT
*
75921026 CACATGGGCATGTGCCCT
1 CACACGGGCATGTGCCCT
75921044 GTGGTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.33, G:0.28, T:0.26
Consensus pattern (20 bp):
CACACGGGCATGTGCCCTTT
Found at i:75922172 original size:21 final size:19
Alignment explanation
Indices: 75922132--75922172 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
75922122 TTCTTACCTT
*
75922132 ATTTTCAAAAATTTATTTG
1 ATTTTCAAAAATTTAGTTG
75922151 ATTTTCAAAAAATTATAGTTG
1 ATTTTC-AAAAATT-TAGTTG
75922172 A
1 A
75922173 AAATAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 7 0.37
21 6 0.32
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (19 bp):
ATTTTCAAAAATTTAGTTG
Found at i:75925689 original size:75 final size:75
Alignment explanation
Indices: 75925606--75925755 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
75925596 CCTTTGTTAA
75925606 GAGAAAAATGAATGTTTGGTTTAAAAATCCAGAAAACCTACAAGTTGAACTATGGTAAAATCAAT
1 GAGAAAAATGAATGTTTGGTTTAAAAATCCAGAAAACCTACAAGTTGAACTATGGTAAAATCAAT
75925671 GGTGTTTTTG
66 GGTGTTTTTG
75925681 GAGAAAAATGAATGTTTGGTTTAAAAATCCAGAAAACCTACAAGTTGAACTATGGTAAAATCAAT
1 GAGAAAAATGAATGTTTGGTTTAAAAATCCAGAAAACCTACAAGTTGAACTATGGTAAAATCAAT
75925746 GGTGTTTTTG
66 GGTGTTTTTG
75925756 AAGCTTTTTA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (75 bp):
GAGAAAAATGAATGTTTGGTTTAAAAATCCAGAAAACCTACAAGTTGAACTATGGTAAAATCAAT
GGTGTTTTTG
Found at i:75931833 original size:36 final size:34
Alignment explanation
Indices: 75931726--75931836 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 34
75931716 CTCTCTATTT
* *
75931726 TGGTGTGTTTCAATTGGACTAGCTCTTCAGAGCCAT-
1 TGGTGTGTTTTAA-TGGATTAGCTCTT-AGAG-CATC
75931762 TGGTGTGTTTTAGATGGATTAGCTCTTACGAGCATC
1 TGGTGTGTTTTA-ATGGATTAGCTCTTA-GAGCATC
75931798 TGGTGTGTTTTGAATGGATTAGCTCTTATGAGCATC
1 TGGTGTGTTTT-AATGGATTAGCTCTTA-GAGCATC
75931834 TGG
1 TGG
75931837 AGTTTGTTTG
Statistics
Matches: 68, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
35 4 0.06
36 62 0.91
37 2 0.03
ACGTcount: A:0.19, C:0.14, G:0.28, T:0.39
Consensus pattern (34 bp):
TGGTGTGTTTTAATGGATTAGCTCTTAGAGCATC
Found at i:75937203 original size:21 final size:22
Alignment explanation
Indices: 75937165--75937205 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
75937155 AATGCAATCC
*
75937165 AAAAAGAACATAATCAAAGAAG
1 AAAAAGAACATAAACAAAGAAG
*
75937187 AAAAAGAAGA-AAACAAAGA
1 AAAAAGAACATAAACAAAGA
75937206 TAAGGTAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.73, C:0.07, G:0.15, T:0.05
Consensus pattern (22 bp):
AAAAAGAACATAAACAAAGAAG
Found at i:75938543 original size:19 final size:19
Alignment explanation
Indices: 75938519--75938557 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
75938509 AAATTTTACC
75938519 TTTGACTAGACTTTTATCA
1 TTTGACTAGACTTTTATCA
75938538 TTTGACTAGACTTTTATCA
1 TTTGACTAGACTTTTATCA
75938557 T
1 T
75938558 ATTAATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (19 bp):
TTTGACTAGACTTTTATCA
Found at i:75946961 original size:36 final size:36
Alignment explanation
Indices: 75946914--75947174 Score: 153
Period size: 36 Copynumber: 7.4 Consensus size: 36
75946904 ATATCTTTGG
* * * *
75946914 TTTATCCGACTAGCGCTGGGCGCAATTCTTTATCGA
1 TTTATTCGACTAGCGCTGGGCACAAATCTTTGTCGA
* * **
75946950 TTTATTTGACTAGTG-TAGGGCAC-AATGATTGTC-A
1 TTTATTCGACTAGCGCT-GGGCACAAATCTTTGTCGA
* * *
75946984 ATTATCCGACTAGCGCTGGGCGCAAATCTTTGTCGA
1 TTTATTCGACTAGCGCTGGGCACAAATCTTTGTCGA
* * *
75947020 TCTATTCGACTAGTG-TAGG-ACACAAT-TATTGTCGA
1 TTTATTCGACTAGCGCTGGGCACA-AATCT-TTGTCGA
* * * *
75947055 TTTATCCGACTAGCACTGGGCTCAAATCTTTTTCGA
1 TTTATTCGACTAGCGCTGGGCACAAATCTTTGTCGA
* * *
75947091 TCTATTCGACTAGTG-TAGG-ACACAAT-TATTGTCGA
1 TTTATTCGACTAGCGCTGGGCACA-AATCT-TTGTCGA
* * * * * *
75947126 TTTATCCGACTAGCACTGGGCGCAAAACATTGTCGG
1 TTTATTCGACTAGCGCTGGGCACAAATCTTTGTCGA
* *
75947162 CTTATCCGACTAG
1 TTTATTCGACTAG
75947175 TACAAGGCAC
Statistics
Matches: 166, Mismatches: 45, Indels: 28
0.69 0.19 0.12
Matches are distributed among these distances:
34 23 0.14
35 63 0.38
36 75 0.45
37 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (36 bp):
TTTATTCGACTAGCGCTGGGCACAAATCTTTGTCGA
Found at i:75947054 original size:35 final size:35
Alignment explanation
Indices: 75946914--75947138 Score: 156
Period size: 35 Copynumber: 6.4 Consensus size: 35
75946904 ATATCTTTGG
* * * *
75946914 TTTATCCGACTAGCGCT-GGGCGCAATTCTTTATCGA
1 TTTATCCGACTAGTG-TAGGGCACAATT-ATTGTCGA
** *
75946950 TTTATTTGACTAGTGTAGGGCACAATGATTGTC-A
1 TTTATCCGACTAGTGTAGGGCACAATTATTGTCGA
* * *
75946984 ATTATCCGACTAGCGCT-GGGCGCAAATCT-TTGTCGA
1 TTTATCCGACTAGTG-TAGGGCAC-AAT-TATTGTCGA
* * *
75947020 TCTATTCGACTAGTGTAGGACACAATTATTGTCGA
1 TTTATCCGACTAGTGTAGGGCACAATTATTGTCGA
** * *
75947055 TTTATCCGACTAGCACT-GGGCTCAAATCT-TTTTCGA
1 TTTATCCGACTAG-TGTAGGGCAC-AAT-TATTGTCGA
* * *
75947091 TCTATTCGACTAGTGTAGGACACAATTATTGTCGA
1 TTTATCCGACTAGTGTAGGGCACAATTATTGTCGA
75947126 TTTATCCGACTAG
1 TTTATCCGACTAG
75947139 CACTGGGCGC
Statistics
Matches: 142, Mismatches: 35, Indels: 25
0.70 0.17 0.12
Matches are distributed among these distances:
34 19 0.13
35 61 0.43
36 61 0.43
37 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (35 bp):
TTTATCCGACTAGTGTAGGGCACAATTATTGTCGA
Found at i:75947210 original size:71 final size:71
Alignment explanation
Indices: 75946914--75947160 Score: 370
Period size: 71 Copynumber: 3.5 Consensus size: 71
75946904 ATATCTTTGG
* * * * * * *
75946914 TTTATCCGACTAGCGCTGGGCGCAATTCTTTATCGATTTATTTGACTAGTGTAGGGCACAATGAT
1 TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
75946979 TGTC-A
66 TGTCGA
* *
75946984 ATTATCCGACTAGCGCTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
1 TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
75947049 TGTCGA
66 TGTCGA
* *
75947055 TTTATCCGACTAGCACTGGGCTCAAATCTTTTTCGATCTATTCGACTAGTGTAGGACACAATTAT
1 TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
75947120 TGTCGA
66 TGTCGA
* *
75947126 TTTATCCGACTAGCACTGGGCGCAAAACATTGTCG
1 TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCG
75947161 GCTTATCCGA
Statistics
Matches: 161, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
70 62 0.39
71 99 0.61
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (71 bp):
TTTATCCGACTAGCACTGGGCGCAAATCTTTGTCGATCTATTCGACTAGTGTAGGACACAATTAT
TGTCGA
Found at i:75949067 original size:12 final size:12
Alignment explanation
Indices: 75949050--75949075 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75949040 CCCCACATGC
75949050 CCGTGTGCTAGG
1 CCGTGTGCTAGG
75949062 CCGTGTGCTAGG
1 CCGTGTGCTAGG
75949074 CC
1 CC
75949076 TTGTAACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:75949675 original size:19 final size:19
Alignment explanation
Indices: 75949651--75949688 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
75949641 ACTTAGATGG
*
75949651 ATAGTGTGAGCTGGTTGCT
1 ATAGTGTGAGCTAGTTGCT
75949670 ATAGTGTGAGCTAGTTGCT
1 ATAGTGTGAGCTAGTTGCT
75949689 TGATCCTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.11, G:0.34, T:0.37
Consensus pattern (19 bp):
ATAGTGTGAGCTAGTTGCT
Found at i:75949911 original size:40 final size:40
Alignment explanation
Indices: 75949825--75949985 Score: 173
Period size: 40 Copynumber: 4.0 Consensus size: 40
75949815 TATATGGTTT
* * * *
75949825 AGGGTTACCAAAGTAAAAATA-GGGCACATACGTGCATTCA
1 AGGG-TACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
* * *
75949865 GGGGTACCAAAGTACAAATAGGGGAACTTATGTGCATTCA
1 AGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
** *
75949905 AGGGTACTGAAGTACAAACAGGGGCACCTATGTGCATTCA
1 AGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
* * *
75949945 AAGGTACCGAAGTACAAACAGGGGCA-TGCATGTGCATTCA
1 AGGGTACCAAAGTACAAACAGGGGCACT-TATGTGCATTCA
75949985 A
1 A
75949986 CAATAATTAT
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 15 0.14
40 89 0.86
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (40 bp):
AGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
Found at i:75951909 original size:12 final size:12
Alignment explanation
Indices: 75951892--75951916 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75951882 TACCCTACAC
75951892 GCCCATGTGCTA
1 GCCCATGTGCTA
75951904 GCCCATGTGCTA
1 GCCCATGTGCTA
75951916 G
1 G
75951917 GCTGTGTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.28, T:0.24
Consensus pattern (12 bp):
GCCCATGTGCTA
Found at i:75952721 original size:40 final size:40
Alignment explanation
Indices: 75952677--75952789 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
75952667 TAGCGTTAAG
* *
75952677 AAAGTACAAACAGGGGCACGTATGTGCATTTAGGGGTACC
1 AAAGTACAAACAGGGGCACGTATGTGCATTCAAGGGTACC
*
75952717 AAAGTACAAACAGGGGTACGTATGTGCATTCAAGGGTACC
1 AAAGTACAAACAGGGGCACGTATGTGCATTCAAGGGTACC
* * * *
75952757 GAAGTATAAATAGGGGCACATATGTGCATTCAA
1 AAAGTACAAACAGGGGCACGTATGTGCATTCAA
75952790 CAATTATTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.21
Consensus pattern (40 bp):
AAAGTACAAACAGGGGCACGTATGTGCATTCAAGGGTACC
Found at i:75959151 original size:48 final size:48
Alignment explanation
Indices: 75959026--75959357 Score: 402
Period size: 48 Copynumber: 6.9 Consensus size: 48
75959016 GGTAAGATGT
* * * *
75959026 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTATATC-AGTG-
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCAC--ATATCGAG-GC
* * * *
75959075 CGACGCCATGTTCCAAACATGGTATTACACTAGCACACCTATCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
* * * *
75959123 CGATGCCATG-TCCTAGACACGGTCTTACACTAGCCCACCTATCGAGGC
1 CGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACATATCGAGGC
* * *
75959171 TGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATATCGAGGC
1 CGATGCCATGTTCC-AAACATGGTCTTACACTAG--CTCACATATCGAGGC
75959221 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
* * *
75959269 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
*
75959317 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
75959358 ACTCTAGTAT
Statistics
Matches: 251, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
47 8 0.03
48 170 0.68
49 31 0.12
50 39 0.16
51 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
Found at i:75959293 original size:146 final size:144
Alignment explanation
Indices: 75959026--75959357 Score: 452
Period size: 146 Copynumber: 2.3 Consensus size: 144
75959016 GGTAAGATGT
*
75959026 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTATATCAGTGCGACGCCATGTTCCAA
1 CGATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCATATATCAGTGCGACGCCATGTTCCAA
* *
75959091 ACATGGTATTACACTAGCACACCTATCGAGGCCGATGCCATGTCCTAGACACGGTCTTACACTAG
65 ACATGGTATTACACTAGCACACATATCGAGGCCGATGCCATGTCCTAAACACGGTCTTACACTAG
* *
75959156 CCCACCTATCGAGGC
130 CCCACATATCAAGGC
* * *
75959171 TGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATATCGAG-GCCGATGCCATGTTCC
1 CGATGCCATGTCC-AGACATGGTCTTACACTGGCTCTCATATATC-AGTG-CGACGCCATGTTCC
* * *
75959235 AAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTTCC-AAACATGGTCTTACAC
63 AAACATGGTATTACACTAGCACACATATCGAGGCCGATGCCATG-TCCTAAACACGGTCTTACAC
* * *
75959299 TAGCTCTCATATCAATGC
127 TAGCCCACATATCAAGGC
* *
75959317 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATG-TCCAGACATGGTCTTACACTGGCTCTCATA
75959358 ACTCTAGTAT
Statistics
Matches: 164, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
144 2 0.01
145 40 0.24
146 116 0.71
147 6 0.04
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (144 bp):
CGATGCCATGTCCAGACATGGTCTTACACTGGCTCTCATATATCAGTGCGACGCCATGTTCCAAA
CATGGTATTACACTAGCACACATATCGAGGCCGATGCCATGTCCTAAACACGGTCTTACACTAGC
CCACATATCAAGGC
Found at i:75979997 original size:30 final size:30
Alignment explanation
Indices: 75979963--75980030 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 30
75979953 ATCCTTTCCC
75979963 TTGGTA-CAACGACACAAGGGTGTTCCACCA
1 TTGGTAGCAA-GACACAAGGGTGTTCCACCA
*
75979993 TTGGTAGGCTAGACACAAGGGTGTTCCACCA
1 TTGGTA-GCAAGACACAAGGGTGTTCCACCA
75980024 TTGGTAG
1 TTGGTAG
75980031 GCTAAGTCTC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
30 7 0.20
31 26 0.74
32 2 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (30 bp):
TTGGTAGCAAGACACAAGGGTGTTCCACCA
Found at i:75980009 original size:31 final size:31
Alignment explanation
Indices: 75979973--75980034 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
75979963 TTGGTACAAC
75979973 GACACAAGGGTGTTCCACCATTGGTAGGCTA
1 GACACAAGGGTGTTCCACCATTGGTAGGCTA
75980004 GACACAAGGGTGTTCCACCATTGGTAGGCTA
1 GACACAAGGGTGTTCCACCATTGGTAGGCTA
75980035 AGTCTCGCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.23
Consensus pattern (31 bp):
GACACAAGGGTGTTCCACCATTGGTAGGCTA
Found at i:75981554 original size:47 final size:48
Alignment explanation
Indices: 75981488--75981590 Score: 154
Period size: 47 Copynumber: 2.2 Consensus size: 48
75981478 TATCAGTATT
* *
75981488 GATGCCATGTTCCAAACATGGTCTTACACT-AGCTACCTATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
* * *
75981535 GATGCCATGTCCCAGACATGGTCTTACACTAACCTTCCTATCGAGGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
75981583 GATGCCAT
1 GATGCCAT
75981591 ATCCTTACAC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 28 0.56
48 22 0.44
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
Found at i:75981672 original size:48 final size:48
Alignment explanation
Indices: 75981606--75981757 Score: 207
Period size: 48 Copynumber: 3.2 Consensus size: 48
75981596 TACACTAGCT
*
75981606 CTCATATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
1 CTCACATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
* * * *
75981654 CTCACATATCAAGGCTGATGCCATGTTTCAAACATAGTTTTACACT-A
1 CTCACATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
* * * *
75981701 GCTCTCATATCAATCCCGATGCCATATTCCAAACATGGTCTTACACTGA
1 -CTCACATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
75981750 CTCACATA
1 CTCACATA
75981758 ACCCTAGTAT
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 86 0.98
49 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (48 bp):
CTCACATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
Found at i:75981674 original size:87 final size:88
Alignment explanation
Indices: 75981533--75981757 Score: 219
Period size: 96 Copynumber: 2.5 Consensus size: 88
75981523 CCTATCGAGG
* * * *
75981533 CCGATGCCATGTCCCAGACATGGTCTTACACTAACCTTC-C-TATCGAGGTCGATGCCA-TATC-
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGA-C-TCACATATCAAGGTCGATGCCAGTATCA
*
75981594 C-TTACACTAGCTCTCATATATCAATG
64 CTTTACACTAGCTCTC--ATATCAATC
* *
75981620 CTGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCAAGG-CTGATGCCATGTTTCA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCAAGGTC-GATGCCA-GTATC-
75981684 AACATAGTTTTACACTAGCTCTCATATCAATC
63 -AC-----TTTACACTAGCTCTCATATCAATC
*
75981716 CCGATGCCATATTCCAAACATGGTCTTACACTGACTCACATA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATA
75981758 ACCCTAGTAT
Statistics
Matches: 115, Mismatches: 9, Indels: 19
0.80 0.06 0.13
Matches are distributed among these distances:
85 2 0.02
86 3 0.03
87 44 0.38
89 3 0.03
92 1 0.01
96 48 0.42
98 14 0.12
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (88 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCAAGGTCGATGCCAGTATCACT
TTACACTAGCTCTCATATCAATC
Found at i:75985717 original size:28 final size:28
Alignment explanation
Indices: 75985653--75985804 Score: 198
Period size: 28 Copynumber: 5.4 Consensus size: 28
75985643 TATAATAAGT
* *
75985653 TCGCACACTCATTGCTATATAATC-AAC
1 TCGCACACTTAGTGCTATATAATCAAAC
75985680 TCGCACACTTAGTGCTATATAATCAAAC
1 TCGCACACTTAGTGCTATATAATCAAAC
* *
75985708 TCGCACACTTAGTGCTACATAATCAAGC
1 TCGCACACTTAGTGCTATATAATCAAAC
* *
75985736 TCGCACACTTAGTGCTACATAATCAAGC
1 TCGCACACTTAGTGCTATATAATCAAAC
* * *
75985764 TCGCACACTTAGTGCTGTACAATTTAAAC
1 TCGCACACTTAGTGCTATATAA-TCAAAC
*
75985793 CCGCACACTTAG
1 TCGCACACTTAG
75985805 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 22 0.19
28 76 0.67
29 15 0.13
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATATAATCAAAC
Found at i:75989217 original size:25 final size:26
Alignment explanation
Indices: 75989189--75989241 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
75989179 CCCAACTCTC
75989189 CATCGCCG-GACCCGACCATCTATTG
1 CATCGCCGCGACCCGACCATCTATTG
* *
75989214 CATCGCCGTCGACTCGACCATCTGTTG
1 CATCGCCG-CGACCCGACCATCTATTG
75989241 C
1 C
75989242 GTCACTGTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
27 16 0.67
ACGTcount: A:0.17, C:0.40, G:0.21, T:0.23
Consensus pattern (26 bp):
CATCGCCGCGACCCGACCATCTATTG
Found at i:75989251 original size:27 final size:28
Alignment explanation
Indices: 75989201--75989256 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
75989191 TCGCCGGACC
*
75989201 CGACCATCTATTGCATCGCCGTCG-ACT
1 CGACCATCTATTGCATCACCGTCGCACT
* * *
75989228 CGACCATCTGTTGCGTCACTGTCGCACT
1 CGACCATCTATTGCATCACCGTCGCACT
75989256 C
1 C
75989257 CTCTGCTGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.16, C:0.38, G:0.20, T:0.27
Consensus pattern (28 bp):
CGACCATCTATTGCATCACCGTCGCACT
Found at i:75990375 original size:20 final size:19
Alignment explanation
Indices: 75990352--75990390 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
75990342 CCAAACAAAT
75990352 AAAAAATAATATAATAACCC
1 AAAAAATAATATAA-AACCC
* *
75990372 AAAACATTATATAAAACCC
1 AAAAAATAATATAAAACCC
75990391 TTTTAGGTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.62, C:0.18, G:0.00, T:0.21
Consensus pattern (19 bp):
AAAAAATAATATAAAACCC
Found at i:75991664 original size:24 final size:24
Alignment explanation
Indices: 75991636--75991682 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
75991626 TTAATATATT
*
75991636 AAATATTCTCATACGTTTTATCAC
1 AAATATTATCATACGTTTTATCAC
* *
75991660 AAATATTATCGTTCGTTTTATCA
1 AAATATTATCATACGTTTTATCA
75991683 TTTAAGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.17, G:0.06, T:0.45
Consensus pattern (24 bp):
AAATATTATCATACGTTTTATCAC
Found at i:75991835 original size:23 final size:22
Alignment explanation
Indices: 75991804--75991850 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
75991794 TGGATTAATA
75991804 AAAGCAAAAGACATGTCTATATT
1 AAAGCAAAAGACATGT-TATATT
* *
75991827 AAAGGAAAAGACATGTTATTTT
1 AAAGCAAAAGACATGTTATATT
75991849 AA
1 AA
75991851 TTAATATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.49, C:0.09, G:0.15, T:0.28
Consensus pattern (22 bp):
AAAGCAAAAGACATGTTATATT
Found at i:75991868 original size:15 final size:14
Alignment explanation
Indices: 75991846--75991901 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
75991836 GACATGTTAT
75991846 TTTAATTAATATAA
1 TTTAATTAATATAA
*
75991860 TTTAGATTAAT-TTA
1 TTTA-ATTAATATAA
*
75991874 TTT-A--AATATTA
1 TTTAATTAATATAA
75991885 TTTAATTAATATAA
1 TTTAATTAATATAA
75991899 TTT
1 TTT
75991902 GGATTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
10 3 0.09
11 6 0.17
12 2 0.06
14 18 0.51
15 6 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TTTAATTAATATAA
Found at i:75991871 original size:19 final size:19
Alignment explanation
Indices: 75991847--75991910 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
75991837 ACATGTTATT
75991847 TTAATTAATATAATTTAGA
1 TTAATTAATATAATTTAGA
* * *
75991866 TTAATTTATTTAAATATTA-T
1 TTAATTAATAT-AAT-TTAGA
*
75991886 TTAATTAATATAATTTGGA
1 TTAATTAATATAATTTAGA
75991905 TTAATT
1 TTAATT
75991911 TATTTAAATA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 2 0.06
19 18 0.51
20 12 0.34
21 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
TTAATTAATATAATTTAGA
Found at i:75991878 original size:24 final size:24
Alignment explanation
Indices: 75991846--75991900 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
75991836 GACATGTTAT
75991846 TTTAATT-AATATAATTTAGATTAA
1 TTTAATTAAATATAATTTA-ATTAA
* *
75991870 TTTATTTAAATATTATTTAATTAA
1 TTTAATTAAATATAATTTAATTAA
*
75991894 TATAATT
1 TTTAATT
75991901 TGGATTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTAATTAAATATAATTTAATTAA
Found at i:75991890 original size:39 final size:39
Alignment explanation
Indices: 75991846--75991921 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
75991836 GACATGTTAT
75991846 TTTAATTAATATAATTTAGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTAGATTAATTTATTTAAATATTA
*
75991885 TTTAATTAATATAATTTGGATTAATTTATTTAAATAT
1 TTTAATTAATATAATTTAGATTAATTTATTTAAATAT
75991922 ATAAGAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (39 bp):
TTTAATTAATATAATTTAGATTAATTTATTTAAATATTA
Found at i:75991901 original size:25 final size:25
Alignment explanation
Indices: 75991853--75991901 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
75991843 TATTTTAATT
*
75991853 AATATAATTTAGATTAATTTATTTA
1 AATATAATTTAGATTAATTAATTTA
*
75991878 AATATTATTTA-ATTAATATAATTT
1 AATATAATTTAGATTAAT-TAATTT
75991902 GGATTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
AATATAATTTAGATTAATTAATTTA
Found at i:75992052 original size:9 final size:9
Alignment explanation
Indices: 75992022--75992196 Score: 187
Period size: 9 Copynumber: 19.7 Consensus size: 9
75992012 TATATACTTG
*
75992022 AACTTACAC
1 AACTTACAT
*
75992031 AACTCACGA-
1 AACTTAC-AT
75992040 AACTTACAT
1 AACTTACAT
*
75992049 AACTTATAT
1 AACTTACAT
* *
75992058 AGCTCACAT
1 AACTTACAT
75992067 AACTTACAT
1 AACTTACAT
75992076 AACTTACAT
1 AACTTACAT
75992085 AACTTACAT
1 AACTTACAT
*
75992094 AACTCACAT
1 AACTTACAT
75992103 AACTTACAT
1 AACTTACAT
*
75992112 AACTTATAT
1 AACTTACAT
75992121 AACTTACAT
1 AACTTACAT
*
75992130 AACTCACAT
1 AACTTACAT
75992139 AACTTACAT
1 AACTTACAT
*
75992148 AATTTACAT
1 AACTTACAT
75992157 AA--TACAT
1 AACTTACAT
* *
75992164 AA-GTAGAT
1 AACTTACAT
* *
75992172 ATCATATCAT
1 AACTTA-CAT
75992182 AACTTACAT
1 AACTTACAT
75992191 AACTTA
1 AACTTA
75992197 ATTATACTTA
Statistics
Matches: 140, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
7 7 0.05
8 6 0.04
9 120 0.86
10 7 0.05
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:75992087 original size:36 final size:36
Alignment explanation
Indices: 75992040--75992196 Score: 212
Period size: 36 Copynumber: 4.4 Consensus size: 36
75992030 CAACTCACGA
* *
75992040 AACTTACATAACTTATATAGCTCACATAACTTACAT
1 AACTTACATAACTTACATAACTCACATAACTTACAT
75992076 AACTTACATAACTTACATAACTCACATAACTTACAT
1 AACTTACATAACTTACATAACTCACATAACTTACAT
*
75992112 AACTTATATAACTTACATAACTCACATAACTTACAT
1 AACTTACATAACTTACATAACTCACATAACTTACAT
* * * * *
75992148 AATTTACATAA--TACATAAGT-AGATATCATATCAT
1 AACTTACATAACTTACATAACTCACATAACTTA-CAT
75992182 AACTTACATAACTTA
1 AACTTACATAACTTA
75992197 ATTATACTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
33 7 0.06
34 21 0.19
36 80 0.74
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.33
Consensus pattern (36 bp):
AACTTACATAACTTACATAACTCACATAACTTACAT
Found at i:75997274 original size:13 final size:14
Alignment explanation
Indices: 75997258--75997286 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75997248 TTATTAATAT
75997258 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
75997271 TTATAATGGTTTAA
1 TTATAATGGTTTAA
75997285 TT
1 TT
75997287 TGTCTTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:75997738 original size:27 final size:27
Alignment explanation
Indices: 75997700--75997751 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
75997690 AGAACAGAGG
75997700 CAGCAGAGAGGGAGGCAGAGGCAGCGA
1 CAGCAGAGAGGGAGGCAGAGGCAGCGA
* *
75997727 CAGCAGTGAGGGAGGCAGCGGCAGC
1 CAGCAGAGAGGGAGGCAGAGGCAGC
75997752 AGCGATGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.21, G:0.48, T:0.02
Consensus pattern (27 bp):
CAGCAGAGAGGGAGGCAGAGGCAGCGA
Found at i:75998051 original size:31 final size:31
Alignment explanation
Indices: 75998016--75998074 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
75998006 TTTATACTAC
*
75998016 ATTTGCTATTTTTGGTTGGATTTCATGCTAT
1 ATTTGCTATTTTTGGTTGGATTTAATGCTAT
*
75998047 ATTTGCTGTTTTTGGTTGGATTTAATGC
1 ATTTGCTATTTTTGGTTGGATTTAATGC
75998075 AGGAAGGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.15, C:0.08, G:0.22, T:0.54
Consensus pattern (31 bp):
ATTTGCTATTTTTGGTTGGATTTAATGCTAT
Found at i:75998610 original size:21 final size:21
Alignment explanation
Indices: 75998580--75998619 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
75998570 TAACGGGATT
*
75998580 GCTGACGTGGTAAGTTAACCA
1 GCTGACGTGGCAAGTTAACCA
*
75998601 GCTGATGTGGCAAGTTAAC
1 GCTGACGTGGCAAGTTAAC
75998620 TTGCCACGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (21 bp):
GCTGACGTGGCAAGTTAACCA
Found at i:76001745 original size:13 final size:13
Alignment explanation
Indices: 76001727--76001751 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76001717 GTATCAAGTT
76001727 TTTTTAATTAATG
1 TTTTTAATTAATG
76001740 TTTTTAATTAAT
1 TTTTTAATTAAT
76001752 AAATATATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:76003019 original size:12 final size:13
Alignment explanation
Indices: 76002996--76003025 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
76002986 AGTTAGAGGG
76002996 GAAGAGAGAAAGA
1 GAAGAGAGAAAGA
76003009 GAAGA-AGAAAGA
1 GAAGAGAGAAAGA
76003021 GAAGA
1 GAAGA
76003026 TTGAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAGAGAAAGA
Found at i:76007642 original size:9 final size:9
Alignment explanation
Indices: 76007624--76007656 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
76007614 TTAAGTTTAA
76007624 GTTT-AAAT
1 GTTTGAAAT
76007632 GTTTGAAAT
1 GTTTGAAAT
76007641 GTTTGAAAT
1 GTTTGAAAT
76007650 GTTTGAA
1 GTTTGAA
76007657 TGGATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.17
9 20 0.83
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
GTTTGAAAT
Found at i:76008464 original size:27 final size:25
Alignment explanation
Indices: 76008434--76008490 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 25
76008424 ACATGTAAAC
*
76008434 GAAATACCTATATGAAGCGGTTATAT
1 GAAATAACTATATGAAG-GGTTATAT
* *
76008460 GGAAATAATTATATGAAGTGTTATAT
1 -GAAATAACTATATGAAGGGTTATAT
76008486 GAAAT
1 GAAAT
76008491 GTTTATATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 5 0.19
26 7 0.26
27 15 0.56
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.33
Consensus pattern (25 bp):
GAAATAACTATATGAAGGGTTATAT
Found at i:76025008 original size:79 final size:79
Alignment explanation
Indices: 76024859--76025017 Score: 214
Period size: 79 Copynumber: 2.0 Consensus size: 79
76024849 TGAAATTGTA
* * * *
76024859 TTCTATTTGTAAATAGAAATCAATTGAACAATTCTGTTTTAGGATTCTATTCCTGTCGTTCAACA
1 TTCTATTTCTAAATAGAAATCAATTGAACAATTCTATTTCAAGATTCTATTCCTGTCGTTCAACA
* *
76024924 GAATTTGTTCAATT
66 AAATTTATTCAATT
*
76024938 TTCTATTTCTAAATAGAAATCAATTGAACAATTCTATTTCAAGATTCTATT-CT-TACTGTTTAA
1 TTCTATTTCTAAATAGAAATCAATTGAACAATTCTATTTCAAGATTCTATTCCTGT-C-GTTCAA
*
76025001 CAAAATTTATTCGATT
64 CAAAATTTATTCAATT
76025017 T
1 T
76025018 CTGTTGTTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 1 0.01
78 3 0.04
79 66 0.94
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (79 bp):
TTCTATTTCTAAATAGAAATCAATTGAACAATTCTATTTCAAGATTCTATTCCTGTCGTTCAACA
AAATTTATTCAATT
Found at i:76036076 original size:15 final size:16
Alignment explanation
Indices: 76036056--76036085 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76036046 TTTCAAATTA
76036056 TTTTTAAA-AAATAAC
1 TTTTTAAATAAATAAC
76036071 TTTTTAAATAAATAA
1 TTTTTAAATAAATAA
76036086 AAAAATCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTTTAAATAAATAAC
Found at i:76037525 original size:27 final size:27
Alignment explanation
Indices: 76037483--76037537 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
76037473 ATTAATTATA
**
76037483 AAATATTATTATTTTAAGTAAAATATT
1 AAATATTATTATTTTAACAAAAATATT
76037510 AAATAATTATTA-TTTAACAAAAATATT
1 AAAT-ATTATTATTTTAACAAAAATATT
76037537 A
1 A
76037538 TTCAAAAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
AAATATTATTATTTTAACAAAAATATT
Found at i:76046479 original size:16 final size:16
Alignment explanation
Indices: 76046441--76046482 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
76046431 TGTTTTAATG
76046441 AATTTAATA-TTTATT
1 AATTTAATATTTTATT
* **
76046456 TAGATAATATTTTATT
1 AATTTAATATTTTATT
76046472 AATTTAATATT
1 AATTTAATATT
76046483 AATATGATTA
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
AATTTAATATTTTATT
Found at i:76055257 original size:22 final size:21
Alignment explanation
Indices: 76055214--76055257 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
76055204 GTCTTTTAAG
*
76055214 AAAATGATAAATAAAGACAAA
1 AAAATGATAAATAAAAACAAA
* *
76055235 AAAATGCTAAAATAAAAATAAA
1 AAAATGAT-AAATAAAAACAAA
76055257 A
1 A
76055258 TGAAAAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.73, C:0.05, G:0.07, T:0.16
Consensus pattern (21 bp):
AAAATGATAAATAAAAACAAA
Found at i:76055263 original size:17 final size:17
Alignment explanation
Indices: 76055243--76055281 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
76055233 AAAAAATGCT
76055243 AAAATAAAAATAAAATG
1 AAAATAAAAATAAAATG
* *
76055260 AAAAGAAAAATAAATTG
1 AAAATAAAAATAAAATG
76055277 AAAAT
1 AAAAT
76055282 TAAATGGACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (17 bp):
AAAATAAAAATAAAATG
Found at i:76057476 original size:151 final size:151
Alignment explanation
Indices: 76057178--76057469 Score: 548
Period size: 151 Copynumber: 1.9 Consensus size: 151
76057168 GAACTCATTT
76057178 TAAAATTTTGAGGCAAAGACGAAAAGAGTTACCGAATACCGAGAAGTCGTCCATAAATATCTCTA
1 TAAAATTTTGAGGCAAAGACGAAAAGAGTTACCGAATACCGAGAAGTCGTCCATAAATATCTCTA
76057243 TAATGTCTTCCACGAGTTCATAAAAAATGACTAACATGCATCGCTGAAAAGTAGCAGGAGCATTA
66 TAATGTCTTCCACGAGTTCATAAAAAATGACTAACATGCATCGCTGAAAAGTAGCAGGAGCATTA
76057308 CATAATCCAAAGAGCATTACA
131 CATAATCCAAAGAGCATTACA
* *
76057329 TAAATTTTTGAGGCAAAGATGAAAAGAGTTACCGAATACCGAGAAGTCGTCCATAAATATCTCTA
1 TAAAATTTTGAGGCAAAGACGAAAAGAGTTACCGAATACCGAGAAGTCGTCCATAAATATCTCTA
*
76057394 TAATGTCTTCCACGAGTTCATAAAAAATGGCTAACATGCATCGCTGAAAAGTAGCAGGAGCATTA
66 TAATGTCTTCCACGAGTTCATAAAAAATGACTAACATGCATCGCTGAAAAGTAGCAGGAGCATTA
*
76057459 CGTAATCCAAA
131 CATAATCCAAA
76057470 AGGCATTCGT
Statistics
Matches: 137, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 137 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (151 bp):
TAAAATTTTGAGGCAAAGACGAAAAGAGTTACCGAATACCGAGAAGTCGTCCATAAATATCTCTA
TAATGTCTTCCACGAGTTCATAAAAAATGACTAACATGCATCGCTGAAAAGTAGCAGGAGCATTA
CATAATCCAAAGAGCATTACA
Found at i:76062302 original size:69 final size:69
Alignment explanation
Indices: 76062182--76062335 Score: 236
Period size: 69 Copynumber: 2.2 Consensus size: 69
76062172 GTACCATTAG
* * *
76062182 CTCAATAATTTGATAATTTCTAAAAATCATTACTTAATATAGCTTTATAATTAACTACCAAAAAC
1 CTCAATAATTTGATAATTCCTAAAAATCATTACTCAATATAACTTTATAATTAACTACCAAAAAC
76062247 ATAA
66 ATAA
* ** * *
76062251 CTCAATAATTTAATAATTCCTGGAAATCATTACTCAATATAACTTTTTAATTAACTACCTAAAAC
1 CTCAATAATTTGATAATTCCTAAAAATCATTACTCAATATAACTTTATAATTAACTACCAAAAAC
76062316 ATAA
66 ATAA
76062320 CTCAATAATTTGATAA
1 CTCAATAATTTGATAA
76062336 CTAAAATTGT
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 76 1.00
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.36
Consensus pattern (69 bp):
CTCAATAATTTGATAATTCCTAAAAATCATTACTCAATATAACTTTATAATTAACTACCAAAAAC
ATAA
Found at i:76062323 original size:37 final size:37
Alignment explanation
Indices: 76062217--76062326 Score: 99
Period size: 37 Copynumber: 3.1 Consensus size: 37
76062207 ATCATTACTT
* * *
76062217 AATATAGCTTTATAATTAACTACCAAAAACATAACTC
1 AATATAACTTTTTAATTAACTACCTAAAACATAACTC
* * *
76062254 -A-ATAA---TTTAA-TAA-TTCCTGGAAATCATTACTC
1 AATATAACTTTTTAATTAACTACCT--AAAACATAACTC
76062286 AATATAACTTTTTAATTAACTACCTAAAACATAACTC
1 AATATAACTTTTTAATTAACTACCTAAAACATAACTC
76062323 AATA
1 AATA
76062327 ATTTGATAAC
Statistics
Matches: 55, Mismatches: 9, Indels: 18
0.67 0.11 0.22
Matches are distributed among these distances:
30 3 0.05
31 3 0.05
32 14 0.25
33 1 0.02
34 4 0.07
35 3 0.05
36 1 0.02
37 19 0.35
38 3 0.05
39 4 0.07
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (37 bp):
AATATAACTTTTTAATTAACTACCTAAAACATAACTC
Found at i:76065881 original size:43 final size:43
Alignment explanation
Indices: 76065785--76065925 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 43
76065775 CGCCGCCAAA
* * * *
76065785 TTTT-GCGGCGTTTATCTGAAAAAAACGCCAC-AAAAGATCAAGAC
1 TTTTAGCGGCGTTTA--TGAAAAAAGCGCCGCTAAAAG-TCATGGC
*
76065829 TTTTAGCGGCGTTTATGATAAAAGCGCCGCTAAAAGTCATGGC
1 TTTTAGCGGCGTTTATGAAAAAAGCGCCGCTAAAAGTCATGGC
* * ***
76065872 TTTTAGCGGCATTTGTTG-GGGAAGCGCCGCTAAAAGTCATGGC
1 TTTTAGCGGCGTTT-ATGAAAAAAGCGCCGCTAAAAGTCATGGC
*
76065915 TTTTAGTGGCG
1 TTTTAGCGGCG
76065926 CTTTTTTCAC
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
43 61 0.74
44 11 0.13
45 10 0.12
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
TTTTAGCGGCGTTTATGAAAAAAGCGCCGCTAAAAGTCATGGC
Found at i:76065943 original size:43 final size:43
Alignment explanation
Indices: 76065853--76065947 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
76065843 ATGATAAAAG
*** *
76065853 CGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTTGGGGAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTTGCACAAA
* * *
76065896 CGCCGCTAAAAGTCATGGCTTTTAGTGGCGCTTT-TTTCACAAA
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGC-ATTTGTTGCACAAA
76065939 CGCCGCTAA
1 CGCCGCTAA
76065948 TTTTGGCAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 41 0.93
44 3 0.07
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTTGCACAAA
Found at i:76066037 original size:31 final size:31
Alignment explanation
Indices: 76065997--76066062 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
76065987 AACCCTTCCT
* *
76065997 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATGAAATCCAACCAAAAACAACAAATATA
76066028 GCATGAAATCCAACCAAAAACAACAAATATA
1 GCATGAAATCCAACCAAAAACAACAAATATA
76066059 GCAT
1 GCAT
76066063 AAAAAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.55, C:0.23, G:0.08, T:0.15
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAACAAATATA
Found at i:76066340 original size:21 final size:21
Alignment explanation
Indices: 76066293--76066340 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
76066283 TTCTGCTTTG
76066293 CTCTGCCTCCCTCGCTGCTAC
1 CTCTGCCTCCCTCGCTGCTAC
* * *
76066314 CGCTGCCTCCCTCTCTGCTGC
1 CTCTGCCTCCCTCGCTGCTAC
76066335 CTCTGC
1 CTCTGC
76066341 TCTAAGTTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.02, C:0.52, G:0.17, T:0.29
Consensus pattern (21 bp):
CTCTGCCTCCCTCGCTGCTAC
Found at i:76071962 original size:6 final size:6
Alignment explanation
Indices: 76071951--76071975 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
76071941 ATGTTGATGG
76071951 GATTGT GATTGT GATTGT GATTGT G
1 GATTGT GATTGT GATTGT GATTGT G
76071976 TTGATGGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (6 bp):
GATTGT
Found at i:76072315 original size:106 final size:106
Alignment explanation
Indices: 76072026--76072663 Score: 1098
Period size: 106 Copynumber: 6.0 Consensus size: 106
76072016 GATTAAAAGT
* * * * * **
76072026 AAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAATAAAATAAAATAACATATTCGAA
1 AAAATAAAAGAAGAGAAAATATTTTCCGTGATT-AAAT----TAAAATCAAATAAAATATTAAAA
*
76072091 ATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAT
61 ATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
* * * * * *
76072137 AAAATAAAAGTAGACAAAATATTTT-AGTGATTAAAATAAAATAAAATAAAATATTTAAAATAAA
1 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
76072201 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
66 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
76072242 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
1 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
76072307 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
66 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
76072348 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
1 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
76072413 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
66 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
76072454 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
1 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
76072519 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
66 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
76072560 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
1 AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
76072625 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAA
66 ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAA
76072664 TTAAATAAAA
Statistics
Matches: 514, Mismatches: 12, Indels: 7
0.96 0.02 0.01
Matches are distributed among these distances:
105 88 0.17
106 392 0.76
109 3 0.01
110 6 0.01
111 25 0.05
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (106 bp):
AAAATAAAAGAAGAGAAAATATTTTCCGTGATTAAATTAAAATCAAATAAAATATTAAAAATAAA
ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAAAC
Found at i:76075811 original size:21 final size:21
Alignment explanation
Indices: 76075787--76075839 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
76075777 CCCATAACTT
*
76075787 TAAACTCTAAACTATATCCCC
1 TAAACCCTAAACTATATCCCC
76075808 TAAACCCTAAACTATATCCCC
1 TAAACCCTAAACTATATCCCC
*
76075829 T-AACCATAAAC
1 TAAACCCTAAAC
76075840 CACAAAACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 9 0.30
21 21 0.70
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAACCCTAAACTATATCCCC
Found at i:76075818 original size:28 final size:28
Alignment explanation
Indices: 76075766--76075820 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
76075756 CTTAAACCAT
**
76075766 TAAACTATATCCCCATAACTTTAAACTC
1 TAAACTATATCCCCATAACCCTAAACTC
76075794 TAAACTATATCCCC-TAAACCCTAAACT
1 TAAACTATATCCCCAT-AACCCTAAACT
76075821 ATATCCCCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 23 0.96
ACGTcount: A:0.40, C:0.31, G:0.00, T:0.29
Consensus pattern (28 bp):
TAAACTATATCCCCATAACCCTAAACTC
Found at i:76075847 original size:28 final size:28
Alignment explanation
Indices: 76075806--76075874 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
76075796 AACTATATCC
* * *
76075806 CCTAAACC-CTAAACTATATCCCCTAA-
1 CCTAAACCACAAAACAATAACCCCTAAG
76075832 CCATAAACCACAAAACAATAACCCCTAAG
1 CC-TAAACCACAAAACAATAACCCCTAAG
*
76075861 CCTTAACCACAAAA
1 CCTAAACCACAAAA
76075875 TGTATGAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.06
27 6 0.17
28 26 0.72
29 2 0.06
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.16
Consensus pattern (28 bp):
CCTAAACCACAAAACAATAACCCCTAAG
Found at i:76076053 original size:7 final size:7
Alignment explanation
Indices: 76076032--76076127 Score: 54
Period size: 7 Copynumber: 13.4 Consensus size: 7
76076022 CACAAAATAA
*
76076032 TAACCAT
1 TAACCCT
*
76076039 TAAGCCT
1 TAACCCT
76076046 TAACCCT
1 TAACCCT
*
76076053 TAAACCAT
1 T-AACCCT
*
76076061 TAACCCA
1 TAACCCT
76076068 TAACCCAT
1 TAACCC-T
* *
76076076 AAACCCC
1 TAACCCT
76076083 TAACCAC-
1 TAACC-CT
76076090 TAACCAC-
1 TAACC-CT
*
76076097 TAACCCA
1 TAACCCT
76076104 TAACCCT
1 TAACCCT
76076111 TAAACCC-
1 T-AACCCT
*
76076118 CAACCCT
1 TAACCCT
76076125 TAA
1 TAA
76076128 ACCATAAGCC
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
6 6 0.09
7 47 0.67
8 17 0.24
ACGTcount: A:0.40, C:0.40, G:0.01, T:0.20
Consensus pattern (7 bp):
TAACCCT
Found at i:76076061 original size:22 final size:22
Alignment explanation
Indices: 76076033--76076080 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
76076023 ACAAAATAAT
* * *
76076033 AACCATTAAGCCTTAACCCTTA
1 AACCATTAACCCATAACCCATA
76076055 AACCATTAACCCATAACCCATA
1 AACCATTAACCCATAACCCATA
76076077 AACC
1 AACC
76076081 CCTAACCACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.35, G:0.02, T:0.21
Consensus pattern (22 bp):
AACCATTAACCCATAACCCATA
Found at i:76076065 original size:29 final size:28
Alignment explanation
Indices: 76076032--76076116 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 28
76076022 CACAAAATAA
* *
76076032 TAACCATTAAGCCTTAACCCTTAAACCAT
1 TAACCA-TAACCCTTAACCCTTAAACCAC
* *
76076061 TAACCCATAACCCATAAACCCCT-AACCAC
1 TAA-CCATAACCC-TTAACCCTTAAACCAC
*
76076090 TAACCACTAACCCATAACCCTTAAACC
1 TAACCA-TAACCCTTAACCCTTAAACC
76076117 CCAACCCTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
28 9 0.20
29 26 0.58
30 10 0.22
ACGTcount: A:0.40, C:0.39, G:0.01, T:0.20
Consensus pattern (28 bp):
TAACCATAACCCTTAACCCTTAAACCAC
Found at i:76076071 original size:36 final size:35
Alignment explanation
Indices: 76076031--76076169 Score: 115
Period size: 35 Copynumber: 3.9 Consensus size: 35
76076021 CCACAAAATA
* *
76076031 ATAACCATTAAGCCTTAACCCTTAAACCATTAACCC
1 ATAACCATTAAACCCTAACCCTTAAACCA-TAACCC
76076067 ATAACCCA-TAAACCCCTAACCAC-T-AACCACTAACCC
1 ATAA-CCATTAAA-CCCTAACC-CTTAAACCA-TAACCC
* * *
76076103 ATAACCCTTAAACCCCAACCCTTAAACCATAAGCC
1 ATAACCATTAAACCCTAACCCTTAAACCATAACCC
* * * *
76076138 ATAAACA-TAATCCCTAAACCCATAATCCATAA
1 ATAACCATTAAACCCT-AACCCTTAAACCATAA
76076170 ACCTTTAAAT
Statistics
Matches: 84, Mismatches: 12, Indels: 15
0.76 0.11 0.14
Matches are distributed among these distances:
34 7 0.08
35 34 0.40
36 31 0.37
37 11 0.13
38 1 0.01
ACGTcount: A:0.42, C:0.37, G:0.01, T:0.19
Consensus pattern (35 bp):
ATAACCATTAAACCCTAACCCTTAAACCATAACCC
Found at i:76076094 original size:22 final size:22
Alignment explanation
Indices: 76076046--76076087 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
76076036 CATTAAGCCT
* *
76076046 TAACCCTTAAACCATTAACCCA
1 TAACCCATAAACCACTAACCCA
*
76076068 TAACCCATAAACCCCTAACC
1 TAACCCATAAACCACTAACC
76076088 ACTAACCACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.19
Consensus pattern (22 bp):
TAACCCATAAACCACTAACCCA
Found at i:76079506 original size:20 final size:20
Alignment explanation
Indices: 76079481--76079523 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
76079471 ACATAAACAC
*
76079481 TATATTAT-TTTTTAATATTT
1 TATATTATATATTTAAT-TTT
76079501 TATATTATATATTTAATTTT
1 TATATTATATATTTAATTTT
76079521 TAT
1 TAT
76079524 GTGATATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TATATTATATATTTAATTTT
Found at i:76079530 original size:20 final size:21
Alignment explanation
Indices: 76079491--76079531 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
76079481 TATATTATTT
*
76079491 TTTAATATTTTATATTATATA
1 TTTAATATTTTATATGATATA
*
76079512 TTTAAT-TTTTATGTGATATA
1 TTTAATATTTTATATGATATA
76079532 AATTATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (21 bp):
TTTAATATTTTATATGATATA
Found at i:76082146 original size:40 final size:40
Alignment explanation
Indices: 76082088--76082187 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
76082078 TTTATGTTAC
* *
76082088 ATAAAAA-ATTATATTAATAATTTATAAAAATTAAATTAA
1 ATAAAAATTTTATATTAATAATTTATAAAAATTAAATGAA
* * **
76082127 ATACAAATTTTATATTAATAATTTATAATAATTGGATGAA
1 ATAAAAATTTTATATTAATAATTTATAAAAATTAAATGAA
76082167 ATAAAAATTTTATATATAATA
1 ATAAAAATTTTATAT-TAATA
76082188 CTGCATATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
39 6 0.12
40 41 0.79
41 5 0.10
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (40 bp):
ATAAAAATTTTATATTAATAATTTATAAAAATTAAATGAA
Found at i:76082667 original size:276 final size:274
Alignment explanation
Indices: 76082354--76082865 Score: 988
Period size: 276 Copynumber: 1.9 Consensus size: 274
76082344 ACAACCAGTT
76082354 TTTTACAAATATATATATATGATGTAATTTAATTTCAGAAAAGAAAAGTTTGTTTTGGGCTCCAT
1 TTTTACAAATATATATATATGATGTAATTTAATTTCAGAAAAGAAAAGTTTGTTTTGGGCTCCAT
76082419 GTATTCAAATTATGAATTATTCCCATATTTAATATAATTTGAAATCTAATTGAATTGGATGGTAC
66 GTATTCAAATTATGAATTATTCCCATATTTAATATAATTTGAAATCTAATTGAATTGGATGGTAC
*
76082484 ACTAACGACTCCACCTTCATCAAGCTAGAGAGATATAATGCTTCTCCAAGCCTCTCCTTAAGTTC
131 ACTAACGACTCCACCTTCATCAAGCTAGAGAGATATAATGCTTCTCCAAGCCTCTACTTAAGTTC
76082549 AAGTAGATTTATTTATGAGTTAAGTGATTTATCTGATTTGAGCCACAAATGTAATCATCTATATC
196 AAGTAGATTTATTTATGAGTTAAGTGATTTATCTGATTTGAGCCACAAATGTAATCATCTATATC
76082614 TTCCATATCTTCAA
261 TTCCATATCTTCAA
*
76082628 TTTTACAAATATATATATATATGATGTAATTTAATTTCAGAAAATAAAAGTTTGTTTTGGGCTCC
1 TTTTAC-AA-ATATATATATATGATGTAATTTAATTTCAGAAAAGAAAAGTTTGTTTTGGGCTCC
76082693 ATGTATTCAAATTATGAATTATTCCCATATTTAATATAATTTGAAATCTAATTGAATTGGATGGT
64 ATGTATTCAAATTATGAATTATTCCCATATTTAATATAATTTGAAATCTAATTGAATTGGATGGT
76082758 ACACTAACGACTCCACCTTCATCAAGCTAGAGAGATATAATGCTTCTCCAAGCCTCTACTTAAGT
129 ACACTAACGACTCCACCTTCATCAAGCTAGAGAGATATAATGCTTCTCCAAGCCTCTACTTAAGT
76082823 TCAAGTAGATTTATTTATGAGTTAAGTGATTTATCTGATTTGA
194 TCAAGTAGATTTATTTATGAGTTAAGTGATTTATCTGATTTGA
76082866 CCGATTTGAA
Statistics
Matches: 234, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
274 6 0.03
275 2 0.01
276 226 0.97
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.38
Consensus pattern (274 bp):
TTTTACAAATATATATATATGATGTAATTTAATTTCAGAAAAGAAAAGTTTGTTTTGGGCTCCAT
GTATTCAAATTATGAATTATTCCCATATTTAATATAATTTGAAATCTAATTGAATTGGATGGTAC
ACTAACGACTCCACCTTCATCAAGCTAGAGAGATATAATGCTTCTCCAAGCCTCTACTTAAGTTC
AAGTAGATTTATTTATGAGTTAAGTGATTTATCTGATTTGAGCCACAAATGTAATCATCTATATC
TTCCATATCTTCAA
Found at i:76092428 original size:29 final size:28
Alignment explanation
Indices: 76092392--76092463 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
76092382 TCATGAGATT
*
76092392 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
76092422 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
76092449 TGGCACTAAGTGTGC
1 -GGCACTAAGTGTGC
76092464 ATGGTTGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:76092687 original size:174 final size:174
Alignment explanation
Indices: 76092422--76092749 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
76092412 AAATTGTACA
*
76092422 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCATGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATG
* *
76092487 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
76092552 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
76092596 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATG
*
76092661 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
76092726 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
76092750 ACCTTGAGTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:76099966 original size:43 final size:43
Alignment explanation
Indices: 76099918--76100101 Score: 199
Period size: 43 Copynumber: 4.3 Consensus size: 43
76099908 TTTTAGAAAT
* * *
76099918 AAACGCCGCTATAGATCAGGATCTTTAGCGGCGCTTTTCTAAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCTAAC
* *** * *
76099961 AAACGCCGCTATAGCTTGGGATCTTTAGCGGCGCTTTTCTAAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCTAAC
* * *
76100004 AAACGCCACTATAGCTCAAGACCTTTAGCGACGCTTTTAC-CAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTT-CTAAC
* ** *
76100047 AAACGCCACTATAGATCAAAGACCTTTAGCGACGCTTTGATTAC
1 AAACGCCGCTATAGATC-AAGACCTTTAGCGACGCTTTTCTAAC
76100091 AAACGCCGCTA
1 AAACGCCGCTA
76100102 AAAACACCAT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
43 90 0.73
44 33 0.27
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCTAAC
Found at i:76100194 original size:16 final size:16
Alignment explanation
Indices: 76100173--76100206 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76100163 AAATATTAAA
*
76100173 TATTAAAATAAAACAT
1 TATTAAAATAAAAAAT
*
76100189 TATTAATATAAAAAAT
1 TATTAAAATAAAAAAT
76100205 TA
1 TA
76100207 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATAAAAAAT
Found at i:76100460 original size:15 final size:15
Alignment explanation
Indices: 76100440--76100469 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76100430 TGGATCATCT
76100440 TCATCTTCATCTTCA
1 TCATCTTCATCTTCA
*
76100455 TCATCTTCTTCTTCA
1 TCATCTTCATCTTCA
76100470 CTTTCAACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (15 bp):
TCATCTTCATCTTCA
Found at i:76101653 original size:14 final size:14
Alignment explanation
Indices: 76101634--76101663 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
76101624 CAGATTAGGT
76101634 GTGGGAAAAGGTTA
1 GTGGGAAAAGGTTA
76101648 GTGGGAAAAGGTTA
1 GTGGGAAAAGGTTA
76101662 GT
1 GT
76101664 TGCTTTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.43, T:0.23
Consensus pattern (14 bp):
GTGGGAAAAGGTTA
Found at i:76104832 original size:47 final size:46
Alignment explanation
Indices: 76104778--76104878 Score: 157
Period size: 47 Copynumber: 2.2 Consensus size: 46
76104768 ATACATAGGT
* * *
76104778 TTTTTTAAGTTATATTTATAAAAATTAGATAAATTTAAAAATTTTAG
1 TTTTTTAAGTAATATTTATAAAAATTAGATAAAATT-AAAAGTTTAG
76104825 TTTTTTAAGTAATATTTATAAAAATTAGATAAAATTAAAAGTTTAG
1 TTTTTTAAGTAATATTTATAAAAATTAGATAAAATTAAAAGTTTAG
76104871 TGTTTTTA
1 T-TTTTTA
76104879 TTTCATTATT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
46 10 0.20
47 40 0.80
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.49
Consensus pattern (46 bp):
TTTTTTAAGTAATATTTATAAAAATTAGATAAAATTAAAAGTTTAG
Found at i:76105398 original size:14 final size:15
Alignment explanation
Indices: 76105375--76105412 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
76105365 GTCCCTTAAT
76105375 TAAA-CCATAATACC
1 TAAATCCATAATACC
*
76105389 T-AATCCATAATCCC
1 TAAATCCATAATACC
76105403 TAAATCCATA
1 TAAATCCATA
76105413 TATGTAGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATACC
Found at i:76105719 original size:17 final size:17
Alignment explanation
Indices: 76105693--76105736 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
76105683 CCAACCCTTA
*
76105693 ATTAAACCATAATCCCT
1 ATTAATCCATAATCCCT
76105710 ATTAATCCATAATCCCT
1 ATTAATCCATAATCCCT
76105727 A--AATCCATAA
1 ATTAATCCATAA
76105737 ATACTCCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 9 0.35
17 17 0.65
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.30
Consensus pattern (17 bp):
ATTAATCCATAATCCCT
Found at i:76105757 original size:323 final size:312
Alignment explanation
Indices: 76105204--76105794 Score: 717
Period size: 323 Copynumber: 1.8 Consensus size: 312
76105194 TAAATTATAC
* * *
76105204 ATCTTTTACAATTACATAATAACATATTTAAAATATAAATAAAAATCTAAACCCAAAACCCTAAC
1 ATCTTTTACAACTACATAATAACATATTTAAAATATAAATAAAAACCAAAACCCAAAACCCTAAC
* * *
76105269 CCGACCCCTAAAACTCTAAACCCTAAATCCCTAACTCTTAACCACTAACGTCTAACCCCTAAACT
66 CCGACCCATAAAACTCTAAACCCTAAATCCCTAACTCTTAACCACTAACATCTAACCCCTAAACC
*
76105334 CTTAACCCCTAAACCTTAAATCTCGACCAACGTCCCTTAATTAAACCATAATACCTAATCCATAA
131 CCTAACCCCTAAACCTTAAA-CTC-ACCAAC--CCCTTAATTAAACCATAATACCTAATCCATAA
* * * ** * *
76105399 TCCCTAAATCCATATATGTAGTAGTCCCTAAACCTTTAAATATGAACCCCTAAACCGGCCTTAAA
192 TCCCTAAATCCATATATATACTACTAACTAAACCTTAAAATATGAACCCCTAAACCGACCTTAAA
76105464 TATTAAATTTATCATATACTCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
257 TATTAAATTTATCATATACTCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
*
76105520 ATCTTTTACAACTACATAATAACATATTTTAAATATAATAATAATCTAAACCCAAAACCCAAAAC
1 ATCTTTTACAACTACATAATAACATATTTAAAATAT-A-AATAA---AAA-CCAAAACCCAAAAC
* * *
76105585 CCTAACCTGACCCATGAAAC-CTTAAGCCCCTAAATCCCTAACTCTTAACCCTTAGCTAACATCT
60 CCTAACCCGACCCATAAAACTC-TAA-ACCCTAAATCCCTAACTCTTAA-CC--A-CTAACATCT
* * *
76105649 AACTCCTAAACCCCTAACCCCTAAGCCTTAAA-TC-CCAA-CCCTTAATTAAACCATAATCCCTA
119 AACCCCTAAACCCCTAACCCCTAAACCTTAAACTCACCAACCCCTTAATTAAACCATAATACC--
* * * *
76105711 TTAATCCATAATCCCTAAATCCATA-A-ATACTCCCTAACTAAAACCTTAAAATATGATCTCTTA
182 -TAATCCATAATCCCTAAATCCATATATATACT-ACTAACT-AAACCTTAAAATATGAACCCCTA
*
76105774 AACCGACCTTAAATCTTAAAT
244 AACCGACCTTAAATATTAAAT
76105795 AAAATTATAT
Statistics
Matches: 232, Mismatches: 26, Indels: 27
0.81 0.09 0.09
Matches are distributed among these distances:
316 34 0.15
317 1 0.00
318 5 0.02
320 21 0.09
321 7 0.03
322 36 0.16
323 87 0.38
324 2 0.01
325 2 0.01
326 1 0.00
327 36 0.16
ACGTcount: A:0.41, C:0.28, G:0.03, T:0.28
Consensus pattern (312 bp):
ATCTTTTACAACTACATAATAACATATTTAAAATATAAATAAAAACCAAAACCCAAAACCCTAAC
CCGACCCATAAAACTCTAAACCCTAAATCCCTAACTCTTAACCACTAACATCTAACCCCTAAACC
CCTAACCCCTAAACCTTAAACTCACCAACCCCTTAATTAAACCATAATACCTAATCCATAATCCC
TAAATCCATATATATACTACTAACTAAACCTTAAAATATGAACCCCTAAACCGACCTTAAATATT
AAATTTATCATATACTCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
Found at i:76106214 original size:73 final size:73
Alignment explanation
Indices: 76106090--76106248 Score: 237
Period size: 73 Copynumber: 2.2 Consensus size: 73
76106080 TAAATCAATT
* * *
76106090 AAACACCGCTAAATCCCCGAAAGCGCAAAAAAAGGTGTAGTTTTGGCTTAGGTTTTTTGCGGCGC
1 AAACGCCGCTAAATCCCCGAAAGCGCAAAAAAAGGCGTAGTTTTGGATTAGGTTTTTTGCGGCGC
*
76106155 TTTCTAAA
66 TTTCCAAA
* * * *
76106163 AAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTTGGATTAGGTTTTTTGCGGCGC
1 AAACGCCGCTAAATCCCCGAAAGCGCAAAAAAAGGCGTAGTTTTGGATTAGGTTTTTTGCGGCGC
*
76106228 TTTCCCAA
66 TTTCCAAA
76106236 AAACGCCGCTAAA
1 AAACGCCGCTAAA
76106249 GCCCTGAGCA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (73 bp):
AAACGCCGCTAAATCCCCGAAAGCGCAAAAAAAGGCGTAGTTTTGGATTAGGTTTTTTGCGGCGC
TTTCCAAA
Found at i:76106627 original size:113 final size:113
Alignment explanation
Indices: 76106148--76106701 Score: 910
Period size: 113 Copynumber: 4.9 Consensus size: 113
76106138 TAGGTTTTTT
* * * *
76106148 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTTGGATTA
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCAC-AAAGCTCACAAAACTGCGTCGTTTTGGATTA
*
76106213 GGTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
65 GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * **
76106262 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAAACTGCGTCGTTTTACATT
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCAC-AAAGCTCAC-AAAACTGCGTCGTTTTGGATT
* *
76106327 AGGTTTTTTGCGGCGCTATCTCAAAAACGCCGCTAAAGCCGTGAGCATTA
64 AGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
*
76106377 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCATCGTTTTGGATTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGGATTAG
76106442 GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
66 G-TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* *
76106491 GCGGCGCTTCCTTAAAAATGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGGATTAT
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGGATTAG
*
76106556 GTTTTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
*
76106604 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTTGTTTTGGATTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGGATTAG
* *
76106669 GTTTTTTGCGGCGCTTTTTAAAAAACGCCGCTA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTA
76106702 TTGCTTATTG
Statistics
Matches: 414, Mismatches: 24, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
113 159 0.38
114 159 0.38
115 96 0.23
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (113 bp):
GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGGATTAG
GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:76106635 original size:227 final size:228
Alignment explanation
Indices: 76106148--76106701 Score: 914
Period size: 227 Copynumber: 2.4 Consensus size: 228
76106138 TAGGTTTTTT
* * * *
76106148 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTTGGATTA
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCAC-AAAGCTCACAAAACTGCGTCGTTTTGGATTA
* *
76106213 GGTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
65 GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAA
*
76106278 AACGCCGCTAAATCCCCGAAAGCTCACAAAAACTGCGTCGTTTTACATTAGGTTTTTTGCGGCGC
130 AACGCCGCTAAATCCACGAAAGCTCACAAAAACTGCGTCGTTTTACATTAGGTTTTTTGCGGCGC
*
76106343 TATCTCAAAAACGCCGCTAAAGCCGTGAGCATTA
195 TATCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
*
76106377 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCATCGTTTTGGATTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGGATTAG
76106442 GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAA
66 G-TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAA
* ** *
76106507 AATGCCGCTAAATCCAC-AAAGCTCAC-AAAACTGCGTCGTTTTGGATTATGTTTTTTGCGGCGC
130 AACGCCGCTAAATCCACGAAAGCTCACAAAAACTGCGTCGTTTTACATTAGGTTTTTTGCGGCGC
* *
76106570 TTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTA
195 TATCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
*
76106604 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTTGTTTTGGATTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGGATTAG
* *
76106669 GTTTTTTGCGGCGCTTTTTAAAAAACGCCGCTA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTA
76106702 TTGCTTATTG
Statistics
Matches: 305, Mismatches: 19, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
226 30 0.10
227 129 0.42
228 40 0.13
229 106 0.35
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (228 bp):
GCGGCGCTTCCTTAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGGATTAG
GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAA
ACGCCGCTAAATCCACGAAAGCTCACAAAAACTGCGTCGTTTTACATTAGGTTTTTTGCGGCGCT
ATCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:76109640 original size:33 final size:33
Alignment explanation
Indices: 76109603--76109673 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
76109593 TTGTTCCACT
* *
76109603 AGACTAT-TTCTGTTTTGTGTTTACTATCCCAAC
1 AGACTATCTT-TGTTCTGCGTTTACTATCCCAAC
* *
76109636 AGACTATCTTTGTTCTGCGTTTACTGTCCCAAG
1 AGACTATCTTTGTTCTGCGTTTACTATCCCAAC
76109669 AGACT
1 AGACT
76109674 GTCGTTTTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (33 bp):
AGACTATCTTTGTTCTGCGTTTACTATCCCAAC
Found at i:76114316 original size:45 final size:45
Alignment explanation
Indices: 76114253--76114350 Score: 180
Period size: 45 Copynumber: 2.2 Consensus size: 45
76114243 ATATTTCAAT
76114253 AACCTAAG-GCAAAGTAAAATGTCATGCACATCGAACAAACCCAA
1 AACCTAAGTGCAAAGTAAAATGTCATGCACATCGAACAAACCCAA
76114297 AACCTAAGTGCAAAGTAAAATGTCATGCACATCGAACAAACCCAA
1 AACCTAAGTGCAAAGTAAAATGTCATGCACATCGAACAAACCCAA
*
76114342 GACCTAAGT
1 AACCTAAGT
76114351 CCCATGCCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 8 0.15
45 44 0.85
ACGTcount: A:0.46, C:0.24, G:0.14, T:0.15
Consensus pattern (45 bp):
AACCTAAGTGCAAAGTAAAATGTCATGCACATCGAACAAACCCAA
Found at i:76114552 original size:41 final size:41
Alignment explanation
Indices: 76114445--76114611 Score: 264
Period size: 41 Copynumber: 4.1 Consensus size: 41
76114435 CAAAAATTGT
* * * *
76114445 AAAACACAAAGCAATAGAGGCGTTTTTGGTAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
76114487 AAAACC-GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* *
76114527 AAAACCAGAGCATTAGCGGCACTTTTGGTAAAACACCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
76114568 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
76114609 AAA
1 AAA
76114612 GTCATATAAC
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
40 36 0.31
41 75 0.65
42 5 0.04
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
Found at i:76115252 original size:24 final size:24
Alignment explanation
Indices: 76115225--76115273 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
76115215 CGTATATTTG
76115225 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
76115249 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
76115273 T
1 T
76115274 ATTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:76120816 original size:25 final size:27
Alignment explanation
Indices: 76120779--76120831 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
76120769 TCAAACATGC
76120779 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
76120805 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
76120831 A
1 A
76120832 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:76124088 original size:43 final size:43
Alignment explanation
Indices: 76123989--76124130 Score: 164
Period size: 43 Copynumber: 3.3 Consensus size: 43
76123979 GTTTATATTT
* * *
76123989 TTTAGCGGCGTTTGT-AA-AAAAGGCGTCGCTAAAGGT-TTGTTA
1 TTTAGCGGCGTTT-TCAAGAAAA-GCGTCGCTAAAGGTCATGGTC
* *
76124031 TATAGTGGCGTTTTCAAGAAAAGCGTCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTTCAAGAAAAGCGTCGCTAAAGGTCATGGTC
* * *
76124074 TTTAGCGGTGTTTTCGAGAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTTCAAGAAAAGCGTCGCTAAAGGTCATGGTC
*
76124117 TTTAGTGGCGTTTT
1 TTTAGCGGCGTTTT
76124131 TTTAAATAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 27 0.32
43 57 0.67
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTTCAAGAAAAGCGTCGCTAAAGGTCATGGTC
Done.