Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 229 of 276
Found at i:76128169 original size:15 final size:15
Alignment explanation
Indices: 76128149--76128182 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76128139 GGTGTAAAGG
76128149 AAAAAGAGAGA-AAAT
1 AAAAAGAGA-ATAAAT
76128164 AAAAAGAGAATAAAT
1 AAAAAGAGAATAAAT
76128179 AAAA
1 AAAA
76128183 GGATAAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (15 bp):
AAAAAGAGAATAAAT
Found at i:76129350 original size:13 final size:13
Alignment explanation
Indices: 76129332--76129363 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
76129322 GTAATTGTAG
76129332 TAAAATATTTTAA
1 TAAAATATTTTAA
*
76129345 TAAAATATTTTTA
1 TAAAATATTTTAA
76129358 TAAAAT
1 TAAAAT
76129364 CGAGAGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAAAATATTTTAA
Found at i:76130884 original size:21 final size:21
Alignment explanation
Indices: 76130858--76130899 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
76130848 CAAATGAAAG
*
76130858 ATTGATTTATAATAAGAGTTC
1 ATTGATTCATAATAAGAGTTC
*
76130879 ATTGATTCATATTAAGAGTTC
1 ATTGATTCATAATAAGAGTTC
76130900 TATTTAGGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (21 bp):
ATTGATTCATAATAAGAGTTC
Found at i:76135123 original size:22 final size:23
Alignment explanation
Indices: 76135098--76135143 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
76135088 CAACCAAATC
76135098 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
76135120 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
76135143 A
1 A
76135144 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:76135149 original size:23 final size:23
Alignment explanation
Indices: 76135105--76135149 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
76135095 ATCAATTCAA
*
76135105 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
76135128 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
76135150 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:76142825 original size:22 final size:23
Alignment explanation
Indices: 76142800--76142845 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
76142790 CAACCAAATC
76142800 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
76142822 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
76142845 A
1 A
76142846 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:76142851 original size:23 final size:23
Alignment explanation
Indices: 76142807--76142851 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
76142797 ATCAATTCAA
*
76142807 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
76142830 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
76142852 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:76150233 original size:40 final size:40
Alignment explanation
Indices: 76150129--76150358 Score: 183
Period size: 41 Copynumber: 5.9 Consensus size: 40
76150119 CGTTTGTCCG
* * * * * **
76150129 AAACGCCACTAAAAGCTAAACTATAGTGGCGTTTTTGCCAA
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATC-A
*
76150170 AAACGCCACTAAAAACTGGTCAATAGCGGCGTTTTTATCA
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCA
* * *
76150210 AAACGCCACTAAAAGCTGATCAATAGCGGCGTTTTAATCTC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATC-A
* * *
76150251 AAACGCCA-T------T-A--AATTGCGGCGTTTTTGTCCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAT-CA
* * * *
76150282 AAACGCCACAAAAAACTGATCAATTGTGACGTTTTTATCCA
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAT-CA
*
76150323 AAACGCCACTAAAAACTGATTAATAGCGGCGTTTTT
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTT
76150359 GGTCCAAACG
Statistics
Matches: 152, Mismatches: 25, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
31 23 0.15
32 1 0.01
33 1 0.01
34 1 0.01
38 1 0.01
39 1 0.01
40 38 0.25
41 86 0.57
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.27
Consensus pattern (40 bp):
AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCA
Found at i:76150315 original size:72 final size:71
Alignment explanation
Indices: 76150195--76150335 Score: 176
Period size: 72 Copynumber: 2.0 Consensus size: 71
76150185 CTGGTCAATA
* * *
76150195 GCGGCGTTTTTATCAAAACGCCACTAAAAGCTGATCAATAGCGGCGTTTTAATCTC-AAACGCCA
1 GCGGCGTTTTTATCAAAACGCCACAAAAAACTGATCAATAGCGACGTTTTAATC-CAAAACGCCA
*
76150259 TTAAATT
65 CTAAATT
* * * * *
76150266 GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAATTGTGACGTTTTTATCCAAAACGCCA
1 GCGGCGTTTTTAT-CAAAACGCCACAAAAAACTGATCAATAGCGACGTTTTAATCCAAAACGCCA
76150331 CTAAA
65 CTAAA
76150336 AACTGATTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
71 13 0.22
72 46 0.78
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (71 bp):
GCGGCGTTTTTATCAAAACGCCACAAAAAACTGATCAATAGCGACGTTTTAATCCAAAACGCCAC
TAAATT
Found at i:76150368 original size:41 final size:40
Alignment explanation
Indices: 76150266--76150377 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 40
76150256 CCATTAAATT
*
76150266 GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAATT
1 GCGGCGTTTTTGT-CCAAACGCCACAAAAAACTGATCAATA
* * * * *
76150307 GTGACGTTTTTATCCAAAACGCCACTAAAAACTGATTAATA
1 GCGGCGTTTTTGTCC-AAACGCCACAAAAAACTGATCAATA
*
76150348 GCGGCGTTTTTGGTCCAAACGCCGCAAAAA
1 GCGGCGTTTTT-GTCCAAACGCCACAAAAA
76150378 GTTTAGCAGG
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
40 2 0.03
41 53 0.91
42 3 0.05
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (40 bp):
GCGGCGTTTTTGTCCAAACGCCACAAAAAACTGATCAATA
Found at i:76152702 original size:14 final size:15
Alignment explanation
Indices: 76152683--76152712 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
76152673 TGTGTTTATA
76152683 TAAATACAT-AATTC
1 TAAATACATAAATTC
76152697 TAAATACATAAATTC
1 TAAATACATAAATTC
76152712 T
1 T
76152713 GAAGTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATACATAAATTC
Found at i:76156825 original size:373 final size:373
Alignment explanation
Indices: 76156140--76156860 Score: 1424
Period size: 373 Copynumber: 1.9 Consensus size: 373
76156130 CTTGTCCATT
*
76156140 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
76156205 ATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
76156270 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
76156335 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
76156400 CGATTCTTTTTTGATATTATTATATTCAAAGTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAAGTACTATTTTTTTATATTAATAATGTTTTATTTTA
76156465 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
76156513 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
76156578 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
76156643 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
76156708 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
76156773 CGATTCTTTTTTGATATTATTATATTCAAAGTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAAGTACTATTTTTTTATATTAATAATGTTTTATTTTA
76156838 ATATTTAATATTTTTAAATTTCT
326 ATATTTAATATTTTTAAATTTCT
76156861 CCGTTTTATT
Statistics
Matches: 346, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
373 346 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (373 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAAGTACTATTTTTTTATATTAATAATGTTTTATTTTA
ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
Found at i:76157128 original size:15 final size:15
Alignment explanation
Indices: 76157069--76157128 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
76157059 AACGACATGT
*
76157069 ATATTATTTAATTAA
1 ATATAATTTAATTAA
*
76157084 A-ATAATTT-TTATAA
1 ATATAATTTAAT-TAA
76157098 ATATATATTTAATTAA
1 ATATA-ATTTAATTAA
*
76157114 ATATAATTTACTTAA
1 ATATAATTTAATTAA
76157129 CTTACATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
13 1 0.03
14 10 0.27
15 13 0.35
16 12 0.32
17 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATAATTTAATTAA
Found at i:76162732 original size:21 final size:21
Alignment explanation
Indices: 76162699--76162749 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
76162689 ACAACTTAGA
*
76162699 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
76162720 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
76162741 GCAGAGGCA
1 GCAGAGGCA
76162750 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:76163050 original size:31 final size:31
Alignment explanation
Indices: 76163004--76163070 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
76162994 TGGTTGTATT
* *
76163004 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
76163035 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
76163066 TTTTA
1 TTTTA
76163071 ATACAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:76163168 original size:42 final size:41
Alignment explanation
Indices: 76163122--76163214 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 41
76163112 ATCTGCCAAA
76163122 TTTAGCGGCG-TTTGT-AAAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTT-TCAAAAAA-CGCCGCTAAAAG-CTTGACC
* *
76163164 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCTTGACC
1 TTTAGCGGCGCTTTT-CAAAAAACGCCGCTAAAAGCTTGACC
76163206 TTTAGCGGC
1 TTTAGCGGC
76163215 ATTTTTTTCC
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
42 27 0.59
43 15 0.33
44 4 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (41 bp):
TTTAGCGGCGCTTTTCAAAAAACGCCGCTAAAAGCTTGACC
Found at i:76164583 original size:27 final size:27
Alignment explanation
Indices: 76164553--76164604 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
76164543 ACTACCTTAC
*
76164553 TTGTTAGACCTACTTTTTCAAATATCA
1 TTGTCAGACCTACTTTTTCAAATATCA
76164580 TTGTCAGACCTACTTTTTCAAATAT
1 TTGTCAGACCTACTTTTTCAAATAT
76164605 TATGATATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (27 bp):
TTGTCAGACCTACTTTTTCAAATATCA
Found at i:76169543 original size:26 final size:26
Alignment explanation
Indices: 76169509--76169561 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
76169499 GTTGGCAAAG
76169509 TATAAATGAGATATTTTGACCTATTA
1 TATAAATGAGATATTTTGACCTATTA
76169535 TATAAATGAGATATTTTGACCTATTA
1 TATAAATGAGATATTTTGACCTATTA
76169561 T
1 T
76169562 GGGCAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (26 bp):
TATAAATGAGATATTTTGACCTATTA
Found at i:76172480 original size:20 final size:19
Alignment explanation
Indices: 76172444--76172485 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
76172434 AATATATGTA
76172444 TTATATTTTATATTATTTAC
1 TTATATTTTATATTA-TTAC
76172464 TTATATTTTAT-TATATTAC
1 TTATATTTTATAT-TATTAC
76172483 TTA
1 TTA
76172486 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATTTTATATTATTAC
Found at i:76172500 original size:23 final size:18
Alignment explanation
Indices: 76172444--76172485 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
76172434 AATATATGTA
76172444 TTATATTTTATATTATTTAC
1 TTATA-TTT-TATTATTTAC
76172464 TTATATTTTATTATATTAC
1 TTATATTTTATTAT-TTAC
76172483 TTA
1 TTA
76172486 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTATTATTTAC
Found at i:76172612 original size:16 final size:15
Alignment explanation
Indices: 76172593--76172661 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 15
76172583 ATTAACCATA
76172593 TATTATTTCATATTAT
1 TATTATTT-ATATTAT
76172609 TATTA-TT-TATTAT
1 TATTATTTATATTAT
*
76172622 ATATT-TTTAAATTAT
1 -TATTATTTATATTAT
*
76172637 TATTATTT-TA-CAT
1 TATTATTTATATTAT
76172650 TATTATTTATAT
1 TATTATTTATAT
76172662 ATTTTTACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
13 16 0.36
14 13 0.30
15 10 0.23
16 5 0.11
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATTTATATTAT
Found at i:76172636 original size:38 final size:38
Alignment explanation
Indices: 76172594--76172702 Score: 91
Period size: 38 Copynumber: 2.9 Consensus size: 38
76172584 TTAACCATAT
*
76172594 ATTATT-TCATATTATTATTATT-TATTATATATTTTTAA
1 ATTATTATCATATTA-CATTATTAT-TTATATATTTTTAA
* * *
76172632 ATTATTATTATTTTACATTATTATTTATATATTTTTAC
1 ATTATTATCATATTACATTATTATTTATATATTTTTAA
* * *
76172670 TTGTATTAT-ATCTT-TATTAATTATTTATATATT
1 AT-TATTATCATATTACATT-ATTATTTATATATT
76172703 ATACATTATT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
37 3 0.05
38 44 0.73
39 13 0.22
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (38 bp):
ATTATTATCATATTACATTATTATTTATATATTTTTAA
Found at i:76172654 original size:57 final size:61
Alignment explanation
Indices: 76172593--76172759 Score: 157
Period size: 57 Copynumber: 2.9 Consensus size: 61
76172583 ATTAACCATA
*
76172593 TATTATTTCATATTATTATTA-TT-TATTATATATTT-TTAAATTA-TTAT-TATTTTACAT
1 TATTATTTCATATTATTATTACTTGTATTATATATTTATT-AATTATTTATATATTATACAT
* *
76172650 TATTATTT-ATA-TATTTTTACTTGTATTATATCTTTATTAATTATTTATATATTATACAT
1 TATTATTTCATATTATTATTACTTGTATTATATATTTATTAATTATTTATATATTATACAT
**
76172709 TATT-TTTACATA-TA-TACTT--TCATATTATATA-TTA-TAATTATTT-TATATTAT
1 TATTATTT-CATATTATTA-TTACTTGTATTATATATTTATTAATTATTTATATATTAT
76172760 GTCATTTTTN
Statistics
Matches: 95, Mismatches: 7, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
55 15 0.16
56 14 0.15
57 27 0.28
58 18 0.19
59 14 0.15
60 7 0.07
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.61
Consensus pattern (61 bp):
TATTATTTCATATTATTATTACTTGTATTATATATTTATTAATTATTTATATATTATACAT
Found at i:76172680 original size:19 final size:18
Alignment explanation
Indices: 76172613--76172702 Score: 69
Period size: 19 Copynumber: 4.8 Consensus size: 18
76172603 TATTATTATT
76172613 ATTTATTATATATTTTTA
1 ATTTATTATATATTTTTA
*
76172631 AATTATTAT-TA-TTTTA
1 ATTTATTATATATTTTTA
76172647 CATTATTATTTATATATTTTTA
1 -A-T-TTA-TTATATATTTTTA
* *
76172669 CTTGTATTATATCTTTATTA
1 ATT-TATTATATATTT-TTA
76172689 A-TTATTTATATATT
1 ATTTA-TTATATATT
76172703 ATACATTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 17
0.71 0.08 0.21
Matches are distributed among these distances:
16 5 0.09
17 3 0.05
18 10 0.18
19 22 0.39
20 10 0.18
21 2 0.04
22 5 0.09
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (18 bp):
ATTTATTATATATTTTTA
Found at i:76183452 original size:17 final size:17
Alignment explanation
Indices: 76183430--76183463 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
76183420 CTTCATGGAG
*
76183430 ATTTATCAATTGAAAAC
1 ATTTATCAACTGAAAAC
76183447 ATTTATCAACTGAAAAC
1 ATTTATCAACTGAAAAC
76183464 CATGGTAGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (17 bp):
ATTTATCAACTGAAAAC
Found at i:76184625 original size:20 final size:20
Alignment explanation
Indices: 76184600--76184648 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
76184590 TTACACTTTG
**
76184600 GTGCCCCTGAATGCACATTT
1 GTGCCCCTGAACACACATTT
*
76184620 GTGCCCCTGAACACAGATTT
1 GTGCCCCTGAACACACATTT
76184640 GTGCCCCTG
1 GTGCCCCTG
76184649 TTTGCACTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (20 bp):
GTGCCCCTGAACACACATTT
Found at i:76184702 original size:20 final size:20
Alignment explanation
Indices: 76184640--76184704 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
76184630 ACACAGATTT
* *
76184640 GTGCCCCTGTTTGCACTTCG
1 GTGCCCTTGTTTGCACTTCA
* * *
76184660 GTGTCCTT-TTTGCACGTCT
1 GTGCCCTTGTTTGCACTTCA
*
76184679 GTGCCCTTGTTCGCACTTCA
1 GTGCCCTTGTTTGCACTTCA
76184699 GTGCCC
1 GTGCCC
76184705 CTAACTGGAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
19 16 0.44
20 20 0.56
ACGTcount: A:0.06, C:0.34, G:0.23, T:0.37
Consensus pattern (20 bp):
GTGCCCTTGTTTGCACTTCA
Found at i:76185678 original size:32 final size:32
Alignment explanation
Indices: 76185637--76185702 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
76185627 TGTAATAAGG
76185637 TTTTAAGTGTTGATTTGGTGATTGGTTTGTTT
1 TTTTAAGTGTTGATTTGGTGATTGGTTTGTTT
76185669 TTTTAAGTGTTGATTTGGTGATTGGTTTGTTT
1 TTTTAAGTGTTGATTTGGTGATTGGTTTGTTT
76185701 TT
1 TT
76185703 GAATGGTGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.12, C:0.00, G:0.27, T:0.61
Consensus pattern (32 bp):
TTTTAAGTGTTGATTTGGTGATTGGTTTGTTT
Found at i:76186549 original size:20 final size:20
Alignment explanation
Indices: 76186520--76186576 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
76186510 AAAGTATATT
76186520 TTGT-AAAAGTATAGATA-C
1 TTGTGAAAAGTATAGATACC
76186538 TTGGTGAAAAGTATAGATACC
1 TT-GTGAAAAGTATAGATACC
*
76186559 TTGTGTAAAGTATAGATA
1 TTGTGAAAAGTATAGATA
76186577 TCAAATTGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 2 0.06
19 2 0.06
20 28 0.80
21 3 0.09
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.33
Consensus pattern (20 bp):
TTGTGAAAAGTATAGATACC
Found at i:76188509 original size:72 final size:73
Alignment explanation
Indices: 76188375--76188511 Score: 163
Period size: 72 Copynumber: 1.9 Consensus size: 73
76188365 TCTTTGTGAA
* * * *
76188375 CTTCCTAATTAATGGCTCTCCAGAGCTTCCCGATATGGCTCGCTTGAACTTCCCAATATATGGCT
1 CTTCCTAATTAATGGCTCTCCAAAGCTACCCGATATGGCTCACATGAACTTCCCAATATATGGCT
76188440 ATTCGGAG
66 ATTCGGAG
* * * *
76188448 CTTCCT-ATTAATGGCTCTTCAAAGCTACCC-ATTATTGGCTCACATGAGCTTTCCGAT-TATGG
1 CTTCCTAATTAATGGCTCTCCAAAGCTACCCGA-TA-TGGCTCACATGAACTTCCCAATATATGG
76188510 CT
64 CT
76188512 CTTATGAGTT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
71 1 0.02
72 30 0.56
73 23 0.43
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.34
Consensus pattern (73 bp):
CTTCCTAATTAATGGCTCTCCAAAGCTACCCGATATGGCTCACATGAACTTCCCAATATATGGCT
ATTCGGAG
Found at i:76188510 original size:24 final size:23
Alignment explanation
Indices: 76188475--76188531 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
76188465 TTCAAAGCTA
76188475 CCCATTATTGGCTCACATGAGCTTT
1 CCCATTA-TGGCTCACATGAG-TTT
* **
76188500 CCGATTATGGCTCTTATGAGTTT
1 CCCATTATGGCTCACATGAGTTT
76188523 CCCATTATG
1 CCCATTATG
76188532 CAGCCCGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 11 0.39
24 11 0.39
25 6 0.21
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.39
Consensus pattern (23 bp):
CCCATTATGGCTCACATGAGTTT
Found at i:76188529 original size:23 final size:24
Alignment explanation
Indices: 76188475--76188572 Score: 74
Period size: 25 Copynumber: 4.0 Consensus size: 24
76188465 TTCAAAGCTA
76188475 CCCATTATTGGCTCACATGAGCTTT
1 CCCATTA-TGGCTCACATGAGCTTT
* **
76188500 CCGATTATGGCTCTTATGAG-TTT
1 CCCATTATGGCTCACATGAGCTTT
* ** *
76188523 CCCATTATGCAGCCCGGATAAGC-TT
1 CCCATTATG--GCTCACATGAGCTTT
76188548 CCCATTGCATGGCTCACATGAGCTT
1 CCCATT--ATGGCTCACATGAGCTT
76188573 CCTGTTATAT
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
23 11 0.20
24 11 0.20
25 29 0.53
26 1 0.02
27 3 0.05
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (24 bp):
CCCATTATGGCTCACATGAGCTTT
Found at i:76193854 original size:27 final size:27
Alignment explanation
Indices: 76193819--76193887 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
76193809 TAGATAGTCG
76193819 TGGCAGAGCCACCAGAACAGA-AATATA
1 TGGCAGAGCCACCAGAACAGATAAT-TA
* *
76193846 TGGCAGAGCCACCAGATCAGATAATTG
1 TGGCAGAGCCACCAGAACAGATAATTA
*
76193873 TGGCATAGCCACCAG
1 TGGCAGAGCCACCAG
76193888 GACGCTTCCT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 35 0.92
28 3 0.08
ACGTcount: A:0.36, C:0.25, G:0.25, T:0.14
Consensus pattern (27 bp):
TGGCAGAGCCACCAGAACAGATAATTA
Found at i:76199148 original size:30 final size:28
Alignment explanation
Indices: 76199112--76199187 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 28
76199102 ATTTGTGGGC
**
76199112 TTAGTCCCTATACTTTAATTTTTTTCAATT
1 TTAGTCCCTATACTTTAA-TTTGGTCAA-T
*
76199142 TTAGTCCCTGTACTTTTTAATTTGGTCAAT
1 TTAGTCCCTATAC--TTTAATTTGGTCAAT
*
76199172 TTAATCCCTATACTTT
1 TTAGTCCCTATACTTT
76199188 TTAAATTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 3 0.08
30 24 0.62
31 7 0.18
32 5 0.13
ACGTcount: A:0.22, C:0.18, G:0.07, T:0.53
Consensus pattern (28 bp):
TTAGTCCCTATACTTTAATTTGGTCAAT
Found at i:76201828 original size:87 final size:87
Alignment explanation
Indices: 76201682--76201855 Score: 330
Period size: 87 Copynumber: 2.0 Consensus size: 87
76201672 AACAACGAGT
* *
76201682 AAGTCCCGCATTTCTTTTCGCAAAAAACTTCATTCCCGATCATAAAAACCTTATTCTCTGTTTGA
1 AAGTCCCACATTTCTTTTCGCAAAAAACTTCATTCCCGATCATAAAAACCTTATACTCTGTTTGA
76201747 GATATACGTATGTAAGGTAATG
66 GATATACGTATGTAAGGTAATG
76201769 AAGTCCCACATTTCTTTTCGCAAAAAACTTCATTCCCGATCATAAAAACCTTATACTCTGTTTGA
1 AAGTCCCACATTTCTTTTCGCAAAAAACTTCATTCCCGATCATAAAAACCTTATACTCTGTTTGA
76201834 GATATACGTATGTAAGGTAATG
66 GATATACGTATGTAAGGTAATG
76201856 CGCTTTACGT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (87 bp):
AAGTCCCACATTTCTTTTCGCAAAAAACTTCATTCCCGATCATAAAAACCTTATACTCTGTTTGA
GATATACGTATGTAAGGTAATG
Found at i:76202243 original size:181 final size:182
Alignment explanation
Indices: 76201841--76202269 Score: 479
Period size: 181 Copynumber: 2.4 Consensus size: 182
76201831 TGAGATATAC
* * * * *
76201841 GTATGTAAGGTAATGCGCTTTACGTGTTCAACCATTTGACACAATGGGTGCGTTCTCTTTTTTCA
1 GTATGTAAAGCAATGCGCTTTACGTGTTCGACCATTTGACTCAATGGGTGCGTGCTC--TTTTCA
** * *
76201906 AAAACTTCACCATTCTTTTTCTAGAGCACGTCTATGACAAAGAAAAGTAAGCTCCACGTTTCTTT
64 AAAACTTCACCATTCTTGATCTAGAGCACGTCTATGACAAAGAAAAGTAAGCTCCACATTCCTTT
* * * * * * *
76201971 CACAAAAGATTCACTGCCAATCGTAGAATTCTTGTTCTAAGGTTGCTATACATT
129 CACAAAAGATTCACTGCCAAACATAAAAATATTGTTCTAAGGCTGATATACATT
* * * * *
76202025 -TATGCAAAGCAATGCACTTTACGTGTTCGAGCATTTG-CTCAATGGTTGCGTGCTCTGTTCAAA
1 GTATGTAAAGCAATGCGCTTTACGTGTTCGACCATTTGACTCAATGGGTGCGTGCTCTTTTCAAA
* * ** *
76202088 AACTTCACTATTCTTGATCTAGAGCACGTCTATGATAAAGAACAAGTAATTTCTACATTCCTTTC
66 AACTTCACCATTCTTGATCTAGAGCACGTCTATGACAAAGAA-AAGTAAGCTCCACATTCCTTTC
* * ** * *
76202153 ACAAAA-ACTTCACTTCCAAACATAAAAATATTTTTCTGTGGCTGATGTA-TTT
130 ACAAAAGA-TTCACTGCCAAACATAAAAATATTGTTCTAAGGCTGATATACATT
** *
76202205 GTATGTAAAGCAATGCGCTTTATATGTTCGACCATTTGCCTCAATGGGTGCGTGCTCTTTTCAAA
1 GTATGTAAAGCAATGCGCTTTACGTGTTCGACCATTTGACTCAATGGGTGCGTGCTCTTTTCAAA
76202270 GAATCAGATT
Statistics
Matches: 202, Mismatches: 39, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
180 48 0.24
181 84 0.42
182 39 0.19
183 31 0.15
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (182 bp):
GTATGTAAAGCAATGCGCTTTACGTGTTCGACCATTTGACTCAATGGGTGCGTGCTCTTTTCAAA
AACTTCACCATTCTTGATCTAGAGCACGTCTATGACAAAGAAAAGTAAGCTCCACATTCCTTTCA
CAAAAGATTCACTGCCAAACATAAAAATATTGTTCTAAGGCTGATATACATT
Found at i:76202628 original size:17 final size:17
Alignment explanation
Indices: 76202584--76202620 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
76202574 AATATTTTGC
* *
76202584 TTAAAATATTAGTATTT
1 TTAAAATTTTAGAATTT
76202601 TTAAAATTTTAGAATTT
1 TTAAAATTTTAGAATTT
76202618 TTA
1 TTA
76202621 TACTTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (17 bp):
TTAAAATTTTAGAATTT
Found at i:76204140 original size:29 final size:29
Alignment explanation
Indices: 76204072--76204140 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
76204062 GTTGGTGATT
* * *
76204072 TATAAAAATTAAATCAAATTAGAATTTTA
1 TATATAAATTAAATAAAATTAGAAGTTTA
* *
76204101 TTTATAAATTAAATAAAATTA-TAGTTTA
1 TATATAAATTAAATAAAATTAGAAGTTTA
76204129 TATATAATATTA
1 TATATAA-ATTA
76204141 CACATTAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 11 0.33
29 22 0.67
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.43
Consensus pattern (29 bp):
TATATAAATTAAATAAAATTAGAAGTTTA
Found at i:76206263 original size:5 final size:5
Alignment explanation
Indices: 76206239--76206277 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
76206229 ACGTTAGAAC
* *
76206239 TTTAA TTTTA TGTTAT TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA T-TTAA TTTAA TTTAA TTTAA TTTAA TTT
76206278 TTATAAACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 26 0.90
6 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (5 bp):
TTTAA
Found at i:76209889 original size:48 final size:48
Alignment explanation
Indices: 76209836--76209927 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
76209826 TGTCTCATAT
* *
76209836 CGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACGTGA
1 CGATGCCAATGCCATGTCCTAAACATGGTCTTACATGGAATCACGTGA
76209884 CGATGCCAATGCCATGTCCTAAACATGGTCTTACATGGAATCAC
1 CGATGCCAATGCCATGTCCTAAACATGGTCTTACATGGAATCAC
76209928 TTATAACCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (48 bp):
CGATGCCAATGCCATGTCCTAAACATGGTCTTACATGGAATCACGTGA
Found at i:76210839 original size:5 final size:5
Alignment explanation
Indices: 76210808--76210838 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
76210798 TTGACTTTTC
76210808 TTCTT TTCTT TTCTT TTCTT TTCTT TT-TT TT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TT
76210839 TACACTCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (5 bp):
TTCTT
Found at i:76210839 original size:15 final size:15
Alignment explanation
Indices: 76210803--76210839 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
76210793 CAACTTTGAC
*
76210803 TTTTCTTCTTTTCTT
1 TTTTTTTCTTTTCTT
*
76210818 TTCTTTTCTTTTCTT
1 TTTTTTTCTTTTCTT
76210833 TTTTTTT
1 TTTTTTT
76210840 ACACTCCATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTCTTTTCTT
Found at i:76212306 original size:68 final size:68
Alignment explanation
Indices: 76212078--76212350 Score: 266
Period size: 68 Copynumber: 4.1 Consensus size: 68
76212068 TCAAAATTCC
* * * *
76212078 GCCAAGACAATAAACATAAGATCATATTGTGTAAGACCTTAGCTGGGCTATGTCAATATATGAAG
1 GCCAAGACAATAAACATAAGATCATATTGTGTAAGACCATAGCTGGGCTATGACAACATATGGAG
76212143 TCCT
66 T-CT
* * * ** * * * *
76212147 -CCAGGATAGTAAACATGGGATCATATTGTGTAAGACCAT---TAGGTTATGGCAACATATAGAG
1 GCCAAGACAATAAACATAAGATCATATTGTGTAAGACCATAGCTGGGCTATGACAACATATGGAG
*
76212208 TCC
66 TCT
* * ** *
76212211 GCTAGGACAATAAACATGGGATCATATTGTGTAAGACCATAGCTGGGCTATGAAAACATATGGAG
1 GCCAAGACAATAAACATAAGATCATATTGTGTAAGACCATAGCTGGGCTATGACAACATATGGAG
76212276 TCT
66 TCT
* * * * * * *
76212279 GCCAAGACAGTAAACATAAGATCATATTGTGTAAGACCATGGATAGGCTATGGCAACAAATGAAG
1 GCCAAGACAATAAACATAAGATCATATTGTGTAAGACCATAGCTGGGCTATGACAACATATGGAG
*
76212344 TTT
66 TCT
76212347 GCCA
1 GCCA
76212351 GGATGGTGAA
Statistics
Matches: 165, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
64 1 0.01
65 53 0.32
68 111 0.67
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (68 bp):
GCCAAGACAATAAACATAAGATCATATTGTGTAAGACCATAGCTGGGCTATGACAACATATGGAG
TCT
Found at i:76212313 original size:133 final size:134
Alignment explanation
Indices: 76212083--76212336 Score: 359
Period size: 133 Copynumber: 1.9 Consensus size: 134
76212073 ATTCCGCCAA
* ** *
76212083 GACAATAAACATAAGATCATATTGTGTAAGACCTTAGCTGGGCTATGTCAATATATGAAGTCCTC
1 GACAATAAACATAAGATCATATTGTGTAAGACCATAGCTGGGCTATGAAAACATATGAAGTCCTC
* * ** *
76212148 CAGGATAGTAAACATGGGATCATATTGTGTAAGACCAT-TAGGTTATGGCAACATATAGAGTCCG
66 CAAGACAGTAAACATAAGATCATATTGTGTAAGACCATGTAGGCTATGGCAACATATAGAGTCCG
76212212 CTAG
131 CTAG
** *
76212216 GACAATAAACATGGGATCATATTGTGTAAGACCATAGCTGGGCTATGAAAACATATGGAGT-CTG
1 GACAATAAACATAAGATCATATTGTGTAAGACCATAGCTGGGCTATGAAAACATATGAAGTCCT-
76212280 CCAAGACAGTAAACATAAGATCATATTGTGTAAGACCATGGATAGGCTATGGCAACA
65 CCAAGACAGTAAACATAAGATCATATTGTGTAAGACCAT-G-TAGGCTATGGCAACA
76212337 AATGAAGTTT
Statistics
Matches: 105, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
132 2 0.02
133 89 0.85
136 14 0.13
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (134 bp):
GACAATAAACATAAGATCATATTGTGTAAGACCATAGCTGGGCTATGAAAACATATGAAGTCCTC
CAAGACAGTAAACATAAGATCATATTGTGTAAGACCATGTAGGCTATGGCAACATATAGAGTCCG
CTAG
Found at i:76215515 original size:14 final size:14
Alignment explanation
Indices: 76215496--76215522 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76215486 TCCCCAACAG
76215496 AAGAAAAAGAAAAA
1 AAGAAAAAGAAAAA
76215510 AAGAAAAAGAAAA
1 AAGAAAAAGAAAA
76215523 GCAAAAACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAAAAA
Found at i:76219144 original size:14 final size:13
Alignment explanation
Indices: 76219126--76219175 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
76219116 CTTCTTTAGA
*
76219126 TTTTATTAGTTTT
1 TTTTATTAGTTAT
76219139 TATTTATTTAGTTAT
1 T-TTTA-TTAGTTAT
*
76219154 TTTTATTCATTTAT
1 TTTTATT-AGTTAT
76219168 TTTTATTA
1 TTTTATTA
76219176 ATCTTATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 4 0.12
14 20 0.62
15 8 0.25
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTTATTAGTTAT
Found at i:76223125 original size:27 final size:26
Alignment explanation
Indices: 76223092--76223269 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
76223082 TAAATTGTAC
76223092 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * * *
76223119 TGTACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
76223145 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
76223173 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
76223201 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
76223228 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
76223255 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76223270 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:76223210 original size:82 final size:81
Alignment explanation
Indices: 76223093--76223248 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
76223083 AAATTGTACA
* * * *
76223093 GCACTAAGTGTGCGATTCGACTATGTTGTACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
76223157 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76223174 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
76223239 TGCGAGTTGA
65 TGCGAATTGA
76223249 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 47 0.72
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76223260 original size:82 final size:81
Alignment explanation
Indices: 76223089--76223269 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
76223079 GATTAAATTG
* * * *
76223089 TACAGCACTAAGTGTGCGATTCGACTATGTTGTACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
76223154 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76223170 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
76223234 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76223252 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76223270 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76223280 original size:27 final size:27
Alignment explanation
Indices: 76223174--76223280 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
76223164 TGACCATGCG
* * *
76223174 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
76223202 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
76223229 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
76223256 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
76223281 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:76225958 original size:13 final size:13
Alignment explanation
Indices: 76225940--76225967 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
76225930 CTCTAATCTG
76225940 GTAGATTTATGTT
1 GTAGATTTATGTT
76225953 GTAGATTTATGTT
1 GTAGATTTATGTT
76225966 GT
1 GT
76225968 CCAATTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (13 bp):
GTAGATTTATGTT
Found at i:76227967 original size:22 final size:22
Alignment explanation
Indices: 76227939--76227984 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
76227929 ACTCAAGGTC
76227939 TTTTTCCCACTTAAAACCCTAG
1 TTTTTCCCACTTAAAACCCTAG
*
76227961 TTTTTCCCACTTAAAACCTTAG
1 TTTTTCCCACTTAAAACCCTAG
76227983 TT
1 TT
76227985 GTTGTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.04, T:0.41
Consensus pattern (22 bp):
TTTTTCCCACTTAAAACCCTAG
Found at i:76237285 original size:62 final size:62
Alignment explanation
Indices: 76237183--76237308 Score: 225
Period size: 62 Copynumber: 2.0 Consensus size: 62
76237173 GCAGAAAATC
*
76237183 CTTGTTTGCATTAAGGGCCATGGATGCTCATTTGAAATTGCTTGATGATGGTTCAGTCTTGG
1 CTTGTTTGCATTAAGGGCCATGGATCCTCATTTGAAATTGCTTGATGATGGTTCAGTCTTGG
* *
76237245 CTTGTTTGCATTAAGGGCCATGGATCCTCGTTTGACATTGCTTGATGATGGTTCAGTCTTGG
1 CTTGTTTGCATTAAGGGCCATGGATCCTCATTTGAAATTGCTTGATGATGGTTCAGTCTTGG
76237307 CT
1 CT
76237309 GGGCTAGAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.17, C:0.17, G:0.27, T:0.39
Consensus pattern (62 bp):
CTTGTTTGCATTAAGGGCCATGGATCCTCATTTGAAATTGCTTGATGATGGTTCAGTCTTGG
Found at i:76241886 original size:17 final size:17
Alignment explanation
Indices: 76241847--76241902 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
76241837 CAATTGGACT
*
76241847 GTGTGGGCCACACGGGCC
1 GTGTGGGCCACACGAG-C
76241865 GTGTGGGCCACACGAGC
1 GTGTGGGCCACACGAGC
* *
76241882 GTGTGGACTACACGAGC
1 GTGTGGGCCACACGAGC
76241899 GTGT
1 GTGT
76241903 AGGAATTTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
17 20 0.57
18 15 0.43
ACGTcount: A:0.16, C:0.27, G:0.41, T:0.16
Consensus pattern (17 bp):
GTGTGGGCCACACGAGC
Found at i:76252628 original size:10 final size:10
Alignment explanation
Indices: 76252601--76252659 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
76252591 TTAAATTTCA
76252601 AAAGATAAAT
1 AAAGATAAAT
*
76252611 ACAA-ATAATT
1 A-AAGATAAAT
*
76252621 AAAGATAATT
1 AAAGATAAAT
76252631 AAAGATAAAT
1 AAAGATAAAT
76252641 AAAGATAAAT
1 AAAGATAAAT
76252651 AAAGATAAA
1 AAAGATAAA
76252660 AGCTAGAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
9 2 0.04
10 41 0.91
11 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:76252673 original size:22 final size:22
Alignment explanation
Indices: 76252640--76252695 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
76252630 TAAAGATAAA
*
76252640 TAAAGATAAATAAAGATAAAAGC
1 TAAA-ATAAATAAAAATAAAAGC
*
76252663 TAGAATAAATAAAAATAAAAGC
1 TAAAATAAATAAAAATAAAAGC
76252685 TAAAATTAAAT
1 TAAAA-TAAAT
76252696 CTAAATAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.66, C:0.04, G:0.09, T:0.21
Consensus pattern (22 bp):
TAAAATAAATAAAAATAAAAGC
Found at i:76253327 original size:18 final size:17
Alignment explanation
Indices: 76253299--76253336 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
76253289 TACATCATTT
76253299 TTTCTTCTTTTTTTTTC
1 TTTCTTCTTTTTTTTTC
76253316 TTTCTCTCTTTTTTTTTC
1 TTTCT-TCTTTTTTTTTC
76253334 TTT
1 TTT
76253337 TACTGTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTCTTCTTTTTTTTTC
Found at i:76253346 original size:3 final size:3
Alignment explanation
Indices: 76253340--76253392 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
76253330 TTTCTTTTAC
*
76253340 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TAT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
76253388 TGT TG
1 TGT TG
76253393 CTGCTGCTGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.02, C:0.00, G:0.32, T:0.66
Consensus pattern (3 bp):
TGT
Found at i:76254314 original size:17 final size:17
Alignment explanation
Indices: 76254289--76254324 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
76254279 AAAATAAAGT
76254289 AATAAATAATAAAATAA
1 AATAAATAATAAAATAA
*
76254306 AATAGATAATAAAATAA
1 AATAAATAATAAAATAA
76254323 AA
1 AA
76254325 ATTAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
AATAAATAATAAAATAA
Found at i:76258051 original size:10 final size:10
Alignment explanation
Indices: 76258024--76258082 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
76258014 TTAAATTCCA
76258024 AAAGATAAAT
1 AAAGATAAAT
76258034 ACAA-ATAAAT
1 A-AAGATAAAT
*
76258044 AAAGATAATT
1 AAAGATAAAT
76258054 AAAGATAAAT
1 AAAGATAAAT
*
76258064 AAGGATAAAT
1 AAAGATAAAT
76258074 AAAGATAAA
1 AAAGATAAA
76258083 AGCTAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:76259542 original size:30 final size:30
Alignment explanation
Indices: 76259508--76259568 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
76259498 ATTTTATTGC
*
76259508 TAATTTTGTTATTATTTTAAAGGCATTTGT
1 TAATTTTATTATTATTTTAAAGGCATTTGT
76259538 TAATTTTATTATTATTTTAAAGGCATTTGT
1 TAATTTTATTATTATTTTAAAGGCATTTGT
76259568 T
1 T
76259569 TGTTAAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.57
Consensus pattern (30 bp):
TAATTTTATTATTATTTTAAAGGCATTTGT
Found at i:76260449 original size:30 final size:30
Alignment explanation
Indices: 76260415--76260476 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
76260405 CTTAACAAGT
76260415 AAATGCCTCTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
* *
76260445 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
76260475 AA
1 AA
76260477 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:76260550 original size:22 final size:22
Alignment explanation
Indices: 76260503--76260564 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
76260493 TAATTACAAC
* *
76260503 AAAATAGTAACAACATAATAGT
1 AAAATAGTAACAAAATAAGAGT
*
76260525 AAAATGGTAACAAAATAGAGAG-
1 AAAATAGTAACAAAATA-AGAGT
* *
76260547 AAAATAATAAGAAAATAA
1 AAAATAGTAACAAAATAA
76260565 CATAAAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.03
22 29 0.88
23 3 0.09
ACGTcount: A:0.65, C:0.05, G:0.13, T:0.18
Consensus pattern (22 bp):
AAAATAGTAACAAAATAAGAGT
Found at i:76262758 original size:46 final size:45
Alignment explanation
Indices: 76262686--76262778 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 45
76262676 TGGAGGGATG
76262686 TTTGATTGGTGGGATGAGATTGATAAATCCCAGGAATGCCAAAGA
1 TTTGATTGGTGGGATGAGATTGATAAATCCCAGGAATGCCAAAGA
*
76262731 TNTTGATTGGTGGGATGAGATTTATAAATCCCAGGAATGCCAAAGA
1 T-TTGATTGGTGGGATGAGATTGATAAATCCCAGGAATGCCAAAGA
76262777 TT
1 TT
76262779 CATTTTCCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 2 0.04
46 44 0.96
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (45 bp):
TTTGATTGGTGGGATGAGATTGATAAATCCCAGGAATGCCAAAGA
Found at i:76272737 original size:23 final size:23
Alignment explanation
Indices: 76272707--76272752 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
76272697 AAAGTTTAAG
76272707 TTCATGTCAATATGTCTGGTTGT
1 TTCATGTCAATATGTCTGGTTGT
76272730 TTCATGTCAATATGTCTGGTTGT
1 TTCATGTCAATATGTCTGGTTGT
76272753 GAACAAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TTCATGTCAATATGTCTGGTTGT
Found at i:76298870 original size:59 final size:58
Alignment explanation
Indices: 76298804--76298921 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 58
76298794 TTTAATAACT
76298804 AAACATTCATAATATTAATCCAAATTAACTAAAAACTTCATTCATTTTTTTTTCATTCC
1 AAACATTCATAATATTAATCCAAATTAACTAAAAACTTCATTCA-TTTTTTTTCATTCC
*
76298863 AAACATTCATAATATTAATCCAAATTAACTAATAACTTCATTCATTTTTTTTCATTCC
1 AAACATTCATAATATTAATCCAAATTAACTAAAAACTTCATTCATTTTTTTTCATTCC
76298921 A
1 A
76298922 GCTTATACCA
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
58 15 0.26
59 43 0.74
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (58 bp):
AAACATTCATAATATTAATCCAAATTAACTAAAAACTTCATTCATTTTTTTTCATTCC
Found at i:76299670 original size:23 final size:23
Alignment explanation
Indices: 76299588--76299674 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
76299578 CCTGATCAGT
*
76299588 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
76299610 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
76299630 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
76299653 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
76299675 TCNNNNNNNN
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:76302803 original size:16 final size:17
Alignment explanation
Indices: 76302768--76302803 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
76302758 CCTAATTCTC
76302768 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
76302784 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
76302799 CCTTC
1 CCTTC
76302804 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:76303406 original size:39 final size:39
Alignment explanation
Indices: 76303360--76303531 Score: 122
Period size: 50 Copynumber: 4.2 Consensus size: 39
76303350 AATTTAATAC
76303360 TTATCTTAATAGGATTT-TATTAATTTAATATTAAAGTGT
1 TTATCTTAATA-GATTTATATTAATTTAATATTAAAGTGT
*
76303399 TTATCTTAATATTTAATACTTATCTTAATATTAATTTAATATTAAAGTGT
1 TTATC-------TTAATA--GAT-TT-ATATTAATTTAATATTAAAGTGT
* **
76303449 TTATCTTAATAG-TTTAATATGAAATTTAAT-TT-AA-TAC
1 TTATCTTAATAGATTT-ATAT-TAATTTAATATTAAAGTGT
*
76303486 TTATCTTAATA-ATATTTTATTAATTTAATATTAAAGTGT
1 TTATCTTAATAGAT-TTATATTAATTTAATATTAAAGTGT
76303525 TTATCTT
1 TTATCTT
76303532 GATATTAAAT
Statistics
Matches: 106, Mismatches: 10, Indels: 34
0.71 0.07 0.23
Matches are distributed among these distances:
36 8 0.08
37 18 0.17
38 6 0.06
39 22 0.21
40 9 0.08
43 6 0.06
46 6 0.06
47 2 0.02
48 2 0.02
50 27 0.25
ACGTcount: A:0.37, C:0.05, G:0.06, T:0.52
Consensus pattern (39 bp):
TTATCTTAATAGATTTATATTAATTTAATATTAAAGTGT
Found at i:76303522 original size:126 final size:128
Alignment explanation
Indices: 76303321--76303652 Score: 440
Period size: 126 Copynumber: 2.6 Consensus size: 128
76303311 CCAAAAATAA
**
76303321 TATTATTTTAATAGTTTAATATAAAATTTAATTTAATACTTATCTTAATAGGATTTTATTAATTT
1 TATTATTTTAATAGTTTAATATAAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTT
*
76303386 AATATTAAAGTGTTTATCTTAATATTTAATACTT-ATCTTAATATTAAT-TT-AATATTAA-AGT
66 AATATTAAAGTGTTTATCTTAATA-TTAA-ACTTAAT-TTAATATTAATCTTGAATATAAACAGT
*
76303447 G
128 C
* *
76303448 T-TTATCTTAATAGTTTAATATGAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTT
1 TATTATTTTAATAGTTTAATATAAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTT
* * * * *
76303512 AATATTAAAGTGTTTATCTTGATATTAAATTTAATTTAATATTTATCTTGCATATAAACATTC
66 AATATTAAAGTGTTTATCTTAATATTAAACTTAATTTAATATTAATCTTGAATATAAACAGTC
* * * *
76303575 TATTATTTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAA
1 TATTATTTTAAT-AG-TTTAATATAAAATTTAATTTAATACTTATCTTAATA-ATATTTTATTAA
76303640 TTTAATATTAAAG
63 TTTAATATTAAAG
76303653 CGATTAAGCT
Statistics
Matches: 181, Mismatches: 16, Indels: 12
0.87 0.08 0.06
Matches are distributed among these distances:
124 13 0.07
125 8 0.04
126 88 0.49
127 4 0.02
128 9 0.05
129 2 0.01
130 33 0.18
131 24 0.13
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (128 bp):
TATTATTTTAATAGTTTAATATAAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTT
AATATTAAAGTGTTTATCTTAATATTAAACTTAATTTAATATTAATCTTGAATATAAACAGTC
Found at i:76303542 original size:68 final size:63
Alignment explanation
Indices: 76303335--76303657 Score: 222
Period size: 68 Copynumber: 5.0 Consensus size: 63
76303325 ATTTTAATAG
* * ** *
76303335 TTTAATATAAAATTTAATTTAATACTTATCTTAATAGGATTTTATTAATTTAATATTAAAGTG-
1 TTTAATATTAAATTTAATTTAATATTTATCTTAATAATATTATATTAATTTAATATTAAAG-GA
* * * * *
76303398 TTT-ATCTT-AA--T-ATTTAATACTTATCTTAATATTAATTTAATATTAAAGTGTTTATCTTAA
1 TTTAATATTAAATTTAATTTAATATTTATCTTAATAAT-A-TT-ATATT-AA-T-TTAATATTAA
76303458 TA-G-
60 -AGGA
* * *
76303461 TTTAATATGAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTTAATATTAAAGTGTT
1 TTTAATATTAAATTTAATTTAATATTTATCTTAATAATATTATATTAATTTAATATTAAAG-G--
76303526 TA
63 -A
* * * *
76303528 TCTTGATATTAAATTTAATTTAATATTTATCTTGCATATAAACATTCTATT-ATTT--TAAT-AA
1 T-TTAATATTAAATTTAATTTAATATTTATCTT--A-AT-AATATTATATTAATTTAATATTAAA
76303589 -GA
61 GGA
*
76303591 TTTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAATTTAATATTAAAGCGA
1 TTTAATATTAAATTTAATTTAATATTTATCTTAATA-ATATTATATTAATTTAATATTAAAG-GA
76303656 TT
1 TT
76303658 AAGCTTAATC
Statistics
Matches: 206, Mismatches: 24, Indels: 58
0.72 0.08 0.20
Matches are distributed among these distances:
58 21 0.10
59 12 0.06
60 7 0.03
61 7 0.03
62 45 0.22
63 14 0.07
64 13 0.06
65 11 0.05
66 3 0.01
67 3 0.01
68 51 0.25
69 3 0.01
70 1 0.00
71 6 0.03
72 9 0.04
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (63 bp):
TTTAATATTAAATTTAATTTAATATTTATCTTAATAATATTATATTAATTTAATATTAAAGGA
Found at i:76303550 original size:37 final size:37
Alignment explanation
Indices: 76303429--76303554 Score: 114
Period size: 37 Copynumber: 3.4 Consensus size: 37
76303419 TATCTTAATA
76303429 TTAATTTAATATTAAAGTGTTTATCTTAATAGTTTAATAT
1 TTAATTTAATATTAAAGTGTTTATCTTAATA--TTAA-AT
** ** * **
76303469 GAAATTTAAT-TT-AA-TACTTATCTTAATAATATTTT
1 TTAATTTAATATTAAAGTGTTTATCTTAATATTA-AAT
*
76303504 ATTAATTTAATATTAAAGTGTTTATCTTGATATTAAAT
1 -TTAATTTAATATTAAAGTGTTTATCTTAATATTAAAT
76303542 TTAATTTAATATT
1 TTAATTTAATATT
76303555 TATCTTGCAT
Statistics
Matches: 66, Mismatches: 15, Indels: 13
0.70 0.16 0.14
Matches are distributed among these distances:
35 3 0.05
36 8 0.12
37 27 0.41
38 5 0.08
39 15 0.23
40 8 0.12
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (37 bp):
TTAATTTAATATTAAAGTGTTTATCTTAATATTAAAT
Found at i:76307513 original size:21 final size:22
Alignment explanation
Indices: 76307467--76307514 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
76307457 ATGCAAAAAG
*
76307467 ATAATAAGTTATAATAACGAAA
1 ATAATAAGTTATAATAAAGAAA
* *
76307489 ATAATAAG-TATAATAAATAAT
1 ATAATAAGTTATAATAAAGAAA
76307510 ATAAT
1 ATAAT
76307515 GATATATGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (22 bp):
ATAATAAGTTATAATAAAGAAA
Found at i:76307880 original size:21 final size:23
Alignment explanation
Indices: 76307837--76307880 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
76307827 AACACTACAT
*
76307837 AAATATGTACATGGGACAATATA
1 AAATATATACATGGGACAATATA
76307860 AAATATATACAT-GGA-AATATA
1 AAATATATACATGGGACAATATA
76307881 TAAGTAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 3 0.15
23 11 0.55
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.27
Consensus pattern (23 bp):
AAATATATACATGGGACAATATA
Found at i:76307881 original size:23 final size:23
Alignment explanation
Indices: 76307837--76307919 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
76307827 AACACTACAT
* *
76307837 AAATATGTACATGGGACA-ATATA
1 AAATATATACAT-GGAAATATATA
76307860 AAATATATACATGGAAATATATA
1 AAATATATACATGGAAATATATA
* * *
76307883 AGTAATATATA-ACTAGTAATAT-CA
1 A--AATATATACA-TGGAAATATATA
76307907 AAATATATACATG
1 AAATATATACATG
76307920 ATAGTATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
22 13 0.27
23 18 0.37
24 3 0.06
25 15 0.31
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.30
Consensus pattern (23 bp):
AAATATATACATGGAAATATATA
Found at i:76307957 original size:27 final size:23
Alignment explanation
Indices: 76307887--76308013 Score: 89
Period size: 22 Copynumber: 5.3 Consensus size: 23
76307877 TATATAAGTA
*
76307887 ATATATAACTAGTAATATCAAAATAT
1 ATATATAA-TA-TAATATGAAAA-AT
* *
76307913 ATACATGATAGTATATATGAAAAAT
1 ATATATAATA-TA-ATATGAAAAAT
76307938 ACATGTATATAATATAATATG-AAAAT
1 --A--TATATAATATAATATGAAAAAT
*
76307964 ATATATAATATAATAT-TAAAAT
1 ATATATAATATAATATGAAAAAT
* * *
76307986 ATA-ATAATACAACATTAAAAAT
1 ATATATAATATAATATGAAAAAT
76308008 ATATAT
1 ATATAT
76308014 GATACATATA
Statistics
Matches: 85, Mismatches: 8, Indels: 19
0.76 0.07 0.17
Matches are distributed among these distances:
21 10 0.12
22 31 0.36
23 2 0.02
24 1 0.01
25 7 0.08
26 19 0.22
27 6 0.07
28 2 0.02
29 7 0.08
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (23 bp):
ATATATAATATAATATGAAAAAT
Found at i:76307964 original size:13 final size:12
Alignment explanation
Indices: 76307943--76307991 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
76307933 AAAATACATG
*
76307943 TATATAATATAA
1 TATAAAATATAA
76307955 TATGAAAATAT-A
1 TAT-AAAATATAA
76307967 TAT--AATATAA
1 TATAAAATATAA
76307977 TATTAAAATATAA
1 TA-TAAAATATAA
76307990 TA
1 TA
76307992 ATACAACATT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
9 5 0.16
10 3 0.10
11 1 0.03
12 7 0.23
13 15 0.48
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (12 bp):
TATAAAATATAA
Found at i:76307968 original size:22 final size:22
Alignment explanation
Indices: 76307943--76308028 Score: 99
Period size: 22 Copynumber: 4.0 Consensus size: 22
76307933 AAAATACATG
*
76307943 TATATAATATAATATGAAAATA
1 TATATAATATAATATTAAAATA
76307965 TATATAATATAATATTAAAATA
1 TATATAATATAATATTAAAATA
* *
76307987 TA-ATAATACAACATTAAAA-A
1 TATATAATATAATATTAAAATA
76308007 TATAT-ATGATACATA-TAAAATA
1 TATATAAT-ATA-ATATTAAAATA
76308029 CAACATTAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
20 5 0.09
21 24 0.44
22 26 0.47
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.35
Consensus pattern (22 bp):
TATATAATATAATATTAAAATA
Found at i:76308053 original size:32 final size:32
Alignment explanation
Indices: 76307970--76308058 Score: 115
Period size: 34 Copynumber: 2.6 Consensus size: 32
76307960 AAATATATAT
*
76307970 AATATAATATTAAAATATAATAATACAACATTAAA
1 AATAT-ATA-TAACATATAA-AATACAACATTAAA
76308005 AATATATATGATACATATAAAATACAACATTAAA
1 AATATATAT-A-ACATATAAAATACAACATTAAA
*
76308039 AGTATATATAACATATAAAA
1 AATATATATAACATATAAAA
76308059 ATGTATATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
32 10 0.20
33 2 0.04
34 26 0.52
35 12 0.24
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (32 bp):
AATATATATAACATATAAAATACAACATTAAA
Found at i:76308064 original size:21 final size:18
Alignment explanation
Indices: 76308036--76308075 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 18
76308026 ATACAACATT
76308036 AAAAGTATATATAACATATA
1 AAAAGTATATA-AA-ATATA
76308056 AAAATGTATATAAAATATA
1 AAAA-GTATATAAAATATA
76308075 A
1 A
76308076 TACCTAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 7 0.37
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (18 bp):
AAAAGTATATAAAATATA
Found at i:76308065 original size:19 final size:19
Alignment explanation
Indices: 76307954--76308075 Score: 60
Period size: 19 Copynumber: 6.3 Consensus size: 19
76307944 ATATAATATA
* *
76307954 ATATGAAAATATATATAAT
1 ATATAAAAATATATATAAC
76307973 ATAATATTAAAATATAATAATACAAC
1 AT-ATA--AAAATAT-AT-AT--AAC
76307999 AT-TAAAAATATATATGATAC
1 ATATAAAAATATATAT-A-AC
*
76308019 ATAT---AA-A-ATACAAC
1 ATATAAAAATATATATAAC
*
76308033 AT-TAAAAGTATATATAAC
1 ATATAAAAATATATATAAC
* *
76308051 ATATAAAAATGTATATAAA
1 ATATAAAAATATATATAAC
76308070 ATATAA
1 ATATAA
76308076 TACCTAAGTA
Statistics
Matches: 79, Mismatches: 9, Indels: 30
0.67 0.08 0.25
Matches are distributed among these distances:
13 1 0.01
14 4 0.05
15 1 0.01
16 4 0.05
17 2 0.03
18 10 0.13
19 22 0.28
20 8 0.10
21 3 0.04
22 14 0.18
23 2 0.03
24 4 0.05
26 4 0.05
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
ATATAAAAATATATATAAC
Found at i:76308222 original size:69 final size:69
Alignment explanation
Indices: 76308149--76308286 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
76308139 AATAAAATAA
76308149 TTATATAGATTATAATTTATAATAATACATAATAAAAAATAATAACAAAATAGTTTGAAAATAAA
1 TTATATAGATTATAATTTATAATAATACATAATAAAAAATAATAACAAAATAGTTTGAAAATAAA
76308214 CAAT
66 CAAT
76308218 TTATATAGATTATAATTTATAATAATACATAATAAAAAATAATAACAAAATAGTTTGAAAATAAA
1 TTATATAGATTATAATTTATAATAATACATAATAAAAAATAATAACAAAATAGTTTGAAAATAAA
76308283 CAAT
66 CAAT
76308287 ACACTAACAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (69 bp):
TTATATAGATTATAATTTATAATAATACATAATAAAAAATAATAACAAAATAGTTTGAAAATAAA
CAAT
Found at i:76311527 original size:9 final size:9
Alignment explanation
Indices: 76311513--76311553 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
76311503 ATAAGTATAA
76311513 AATTAACCG
1 AATTAACCG
*
76311522 AATTAATCG
1 AATTAACCG
*
76311531 AATTACCCG
1 AATTAACCG
*
76311540 AACTAACCG
1 AATTAACCG
76311549 AATTA
1 AATTA
76311554 TTTGTATAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:76311586 original size:5 final size:6
Alignment explanation
Indices: 76311571--76311611 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
76311561 AAAATTATAT
*
76311571 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
76311612 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:76311652 original size:13 final size:13
Alignment explanation
Indices: 76311636--76311660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76311626 AATTTTTATG
76311636 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
76311649 ATTGGGTTGGGT
1 ATTGGGTTGGGT
76311661 TGGGTATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:76311660 original size:18 final size:18
Alignment explanation
Indices: 76311637--76311674 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
76311627 ATTTTTATGA
76311637 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
76311655 TTGGGTTGGGTATTTGGG
1 TTGGGTTGGGTAATTGGG
76311673 TT
1 TT
76311675 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.00, G:0.47, T:0.45
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:76313418 original size:33 final size:33
Alignment explanation
Indices: 76313370--76313432 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
76313360 TCCAATCTTA
*
76313370 TTTGTTTTCAGATTTGGGAA-GAAAACAGTCCT
1 TTTGTTTTCAGATTTGAGAATGAAAACAGTCCT
* *
76313402 TTTGTTTTTCATATTTGAGAATTAAAACAGT
1 TTTG-TTTTCAGATTTGAGAATGAAAACAGT
76313433 GATAATTGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 4 0.15
33 14 0.54
34 8 0.31
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (33 bp):
TTTGTTTTCAGATTTGAGAATGAAAACAGTCCT
Found at i:76315025 original size:32 final size:34
Alignment explanation
Indices: 76314989--76315053 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
76314979 TAACAGTGGT
*
76314989 ACTGGACCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAATAA
* **
76315021 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAATA
76315054 TGGCCCATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 9 0.33
33 5 0.19
34 13 0.48
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (34 bp):
ACTGGACCAGAGCCCCTTATTCAGATAACAATAA
Found at i:76315350 original size:22 final size:21
Alignment explanation
Indices: 76315310--76315350 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
76315300 CCAATCCCAT
76315310 GCATCAGATAAAAACAACATG
1 GCATCAGATAAAAACAACATG
76315331 GCATGCAG-TAAATAACAACA
1 GCAT-CAGATAAA-AACAACA
76315351 GTCAAACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.51, C:0.20, G:0.15, T:0.15
Consensus pattern (21 bp):
GCATCAGATAAAAACAACATG
Found at i:76316938 original size:26 final size:26
Alignment explanation
Indices: 76316902--76316957 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
76316892 TGAAATTCCA
76316902 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76316928 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76316954 ATCA
1 ATCA
76316958 ATTTGTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76320060 original size:39 final size:40
Alignment explanation
Indices: 76320015--76320170 Score: 140
Period size: 40 Copynumber: 3.9 Consensus size: 40
76320005 TAAAACACAT
*
76320015 AGCAATAGCGGCG-TTTTACCAAAAACGCCACTAAAACAG
1 AGCAATAGCGGCGCTTTTACCAAAAACGCCGCTAAAACAG
* ** * *
76320054 AGCAATAGCAGCG-TTTTAGTAAAAAACGCTGCAAAAACAG
1 AGCAATAGCGGCGCTTTTA-CCAAAAACGCCGCTAAAACAG
* **
76320094 AGCATTAGCGGCGCTTTTTGC-AAAACGCCGCTAAAAACCAG
1 AGCAATAGCGGCGCTTTTACCAAAAACGCCGCT-AAAA-CAG
* ***
76320135 AGCATTAGCGGCGCTTTT-GGTAAAACGCCGCTAAAA
1 AGCAATAGCGGCGCTTTTACCAAAAACGCCGCTAAAA
76320171 GTCATATAAC
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
39 26 0.27
40 36 0.37
41 36 0.37
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (40 bp):
AGCAATAGCGGCGCTTTTACCAAAAACGCCGCTAAAACAG
Found at i:76320138 original size:41 final size:40
Alignment explanation
Indices: 76320005--76320170 Score: 151
Period size: 41 Copynumber: 4.1 Consensus size: 40
76319995 GCAAAAATTG
* * ** *
76320005 TAAAACACATAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTTGGC-AAAACGCCGC
* * ** *
76320046 T-AAAACAGAGCAATAGCAGCG-TTTTAGTAAAAAACGCTGC
1 TAAAAACAGAGCATTAGCGGCGCTTTT-G-GCAAAACGCCGC
*
76320086 -AAAAACAGAGCATTAGCGGCGCTTTTTGCAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGC
*
76320125 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGC
76320166 TAAAA
1 TAAAA
76320171 GTCATATAAC
Statistics
Matches: 104, Mismatches: 15, Indels: 12
0.79 0.11 0.09
Matches are distributed among these distances:
39 28 0.27
40 34 0.33
41 42 0.40
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.19
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGC
Found at i:76320332 original size:7 final size:7
Alignment explanation
Indices: 76320317--76320370 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
76320307 TTAATTATCA
*
76320317 TTATAGT
1 TTATGGT
76320324 TTATGGT
1 TTATGGT
76320331 TTATGGT
1 TTATGGT
* *
76320338 TTAAGAT
1 TTATGGT
*
76320345 ATATGGT
1 TTATGGT
*
76320352 TTAGGGT
1 TTATGGT
*
76320359 TTAAGGT
1 TTATGGT
76320366 TTATG
1 TTATG
76320371 AGTTAACTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:76320349 original size:21 final size:21
Alignment explanation
Indices: 76320325--76320409 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
76320315 CATTATAGTT
*
76320325 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
76320346 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
**
76320367 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
76320392 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
76320410 GTTTAGGAGT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:76320388 original size:46 final size:46
Alignment explanation
Indices: 76320336--76320425 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
76320326 ATGGTTTATG
*
76320336 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
76320382 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
76320426 GTATTTGAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.42
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
Found at i:76320479 original size:7 final size:7
Alignment explanation
Indices: 76320469--76320581 Score: 52
Period size: 7 Copynumber: 15.7 Consensus size: 7
76320459 TGGATTATGA
76320469 TTTAGGG
1 TTTAGGG
76320476 TTTATGGG
1 TTTA-GGG
* *
76320484 GTTAGTG
1 TTTAGGG
76320491 -TT-GGAG
1 TTTAGG-G
*
76320497 TTTAAGG
1 TTTAGGG
*
76320504 TGTAAGGG
1 T-TTAGGG
*
76320512 TTTGGGG
1 TTTAGGG
*
76320519 TTAAGGG
1 TTTAGGG
*
76320526 TTAAGGG
1 TTTAGGG
*
76320533 TTTAGAG
1 TTTAGGG
*
76320540 TTTAGTG
1 TTTAGGG
76320547 TTTATGGG
1 TTTA-GGG
*
76320555 -ATAGGGG
1 TTTA-GGG
*
76320562 TTAAGAGG
1 TTTAG-GG
76320570 TTTAGGG
1 TTTAGGG
76320577 TTTAG
1 TTTAG
76320582 ATTAATTAGT
Statistics
Matches: 79, Mismatches: 19, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
5 1 0.01
6 3 0.04
7 54 0.68
8 21 0.27
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
TTTAGGG
Found at i:76323124 original size:12 final size:12
Alignment explanation
Indices: 76323107--76323156 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
76323097 AGTTGCTGGA
76323107 AATTGAGATGTT
1 AATTGAGATGTT
*
76323119 AATTGAGGTGTAT
1 AATTGAGATGT-T
* *
76323132 AAAT--GTTGTT
1 AATTGAGATGTT
76323142 AATTGAGATGTT
1 AATTGAGATGTT
76323154 AAT
1 AAT
76323157 ATGTGTGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 4 0.13
11 4 0.13
12 18 0.60
13 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (12 bp):
AATTGAGATGTT
Found at i:76323160 original size:23 final size:23
Alignment explanation
Indices: 76323115--76323160 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
76323105 GAAATTGAGA
*
76323115 TGTTAATTGAGGTGTATAAATGT
1 TGTTAATTGAGATGTATAAATGT
76323138 TGTTAATTGAGATGT-TAATATGT
1 TGTTAATTGAGATGTATAA-ATGT
76323161 GTGTGTGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (23 bp):
TGTTAATTGAGATGTATAAATGT
Found at i:76323165 original size:2 final size:2
Alignment explanation
Indices: 76323158--76323186 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
76323148 GATGTTAATA
76323158 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
76323187 CCCTTCTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:76323566 original size:23 final size:23
Alignment explanation
Indices: 76323547--76324062 Score: 432
Period size: 23 Copynumber: 22.4 Consensus size: 23
76323537 AAATGTTGTT
* *
76323547 AATTG-AGATGTTAAAGTGTTGCA
1 AATTGAAG-TGTTAAAGTGCTGTA
76323570 AATTGAAGTGTTTAAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
76323593 AATTGAACTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
76323616 AATTGAAGTGTTAGAGTGCTGTA
1 AATTGAAGTGTTAAAGTGCTGTA
* * * *
76323639 AATTGGAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
* *
76323662 AATTGAAGTGTT-TAGTTGCTGGA
1 AATTGAAGTGTTAAAG-TGCTGTA
* *
76323685 AATTG-AGATGTTTAAA-TGTTGTT
1 AATTGAAG-TG-TTAAAGTGCTGTA
* *
76323708 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
* *
76323731 AATTGAAGTGTT-TAGTTGCTGGA
1 AATTGAAGTGTTAAAG-TGCTGTA
* *
76323754 AATTG-AGATGTTTAAA-TGTTGTT
1 AATTGAAG-TG-TTAAAGTGCTGTA
* *
76323777 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
76323800 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
*
76323823 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
* *
76323846 AATTGAAGTGTTTAAA-TGTTGTT
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
76323869 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
76323892 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
76323915 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGTA
** *
76323938 AATTGAAGTGCTATAAA-TATTGTT
1 AATTGAAGTG-T-TAAAGTGCTGTA
* *
76323962 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
76323985 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
76324008 AATTGAAGTATTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
76324031 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
76324054 AATTGAAGT
1 AATTGAAGT
76324063 TATGGATTAT
Statistics
Matches: 397, Mismatches: 71, Indels: 50
0.77 0.14 0.10
Matches are distributed among these distances:
22 40 0.10
23 304 0.77
24 51 0.13
25 2 0.01
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTGCTGTA
Found at i:76323605 original size:46 final size:46
Alignment explanation
Indices: 76323526--76324062 Score: 604
Period size: 46 Copynumber: 11.7 Consensus size: 46
76323516 TTCGCTGTAC
* * * * *
76323526 TTGAGGTGTATAAATGTTGTTAATTG-AGATGTTAAAGTGTTGCAAA
1 TTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTTAAAGTGCTGCAAA
*
76323572 TTGAAGTGTTTAAATGCTGTAAATTGAACTGTTAAAGTGCTGCAAA
1 TTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
* * * *
76323618 TTGAAGTG-TTAGAGTGCTGTAAATTGGAGTGTTTAAGTACTGCAAA
1 TTGAAGTGTTTA-AATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
** * * **
76323664 TTGAAGTGTTTAGTTGCTGGAAATTG-AGATGTTTAAA-TGTTGTTAA
1 TTGAAGTGTTTAAATGCTGTAAATTGAAG-TG-TTAAAGTGCTGCAAA
* * * *
76323710 TTGAAATG-TTAAAGTGCTGCAAATTGAAGTGTT-TAGTTGCTGGAAA
1 TTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGTTAAAG-TGCTGCAAA
* * *
76323756 TTG-AGATGTTTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAA
1 TTGAAG-TGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
*
76323802 TTGAAGTGTTTTAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
1 TTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
* * *
76323848 TTGAAGTGTTTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAA
1 TTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
* *
76323894 TTGAAGTGTTTGAATGCTGTAAATTGAAGTGCTTAAA-TGTTGCAAA
1 TTGAAGTGTTTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAA
* ** * *
76323940 TTGAAGTGCTATAAATATTGTTAATTGAAATGTTAAAGTGCTGCAAA
1 TTGAAGTG-TTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
* *
76323987 TTGAAGTGTTTTAATGCTGTAAATTGAAGTATTAAAGTGCTGCAAA
1 TTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
*
76324033 TTGAAGTGTTTGAATGCTGTAAATTGAAGT
1 TTGAAGTGTTTAAATGCTGTAAATTGAAGT
76324063 TATGGATTAT
Statistics
Matches: 413, Mismatches: 62, Indels: 32
0.81 0.12 0.06
Matches are distributed among these distances:
44 1 0.00
45 11 0.03
46 344 0.83
47 57 0.14
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (46 bp):
TTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAA
Found at i:76325964 original size:19 final size:19
Alignment explanation
Indices: 76325941--76325987 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
76325931 ATTTAATCTA
*
76325941 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
76325959 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
76325979 ATTTTTATT
1 ATTTTTATT
76325988 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:76326535 original size:31 final size:34
Alignment explanation
Indices: 76326484--76326556 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 34
76326474 AGAAAACTAT
* *
76326484 TACA-ATATTATATAAATATATACCTATA-CATA
1 TACATATATTATATAAATATATACATATATAATA
76326516 TACATATATTA-A-AAATATATACATATATAATA
1 TACATATATTATATAAATATATACATATATAATA
76326548 TGACATATA
1 T-ACATATA
76326557 CCAAGATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 14 0.39
32 9 0.25
33 13 0.36
ACGTcount: A:0.52, C:0.10, G:0.01, T:0.37
Consensus pattern (34 bp):
TACATATATTATATAAATATATACATATATAATA
Found at i:76326566 original size:39 final size:39
Alignment explanation
Indices: 76326492--76326575 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 39
76326482 ATTACAATAT
* *
76326492 TATATAAATATATACCTATACATATACATATATTAAAAA
1 TATATAAATATATACATATACATATACATAGATTAAAAA
* *
76326531 TATATACATATATA-ATATGACATATACCA-AGATTAATAA
1 TATATAAATATATACATAT-ACATATA-CATAGATTAAAAA
76326570 TA-ATAA
1 TATATAA
76326576 TAAGGATAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
38 6 0.16
39 30 0.79
40 2 0.05
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.35
Consensus pattern (39 bp):
TATATAAATATATACATATACATATACATAGATTAAAAA
Found at i:76328114 original size:40 final size:40
Alignment explanation
Indices: 76328069--76328207 Score: 113
Period size: 40 Copynumber: 3.2 Consensus size: 40
76328059 GGGTTGTAAT
76328069 GGGTTTGGGCTTTTGTTGGGTTAGTTTAGATGGGTATTTG
1 GGGTTTGGGCTTTTGTTGGGTTAGTTTAGATGGGTATTTG
* * *
76328109 GGGTTTGGGCTGGTGATAT-TTGGGCTTAATGGGTTA-AT-GCTTTTATAAG
1 GGGTTTGGGCT--T--T-TGTTGGG-TT-A--GTTTAGATGGGTATT-T--G
*
76328158 GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTG
1 GGGTTTGGGCTTTTGTTGGGTTAGTTTAGATGGGTATTTG
76328198 GGGTTTGGGC
1 GGGTTTGGGC
76328208 AAGGGTTGAC
Statistics
Matches: 77, Mismatches: 7, Indels: 30
0.68 0.06 0.26
Matches are distributed among these distances:
40 22 0.29
41 4 0.05
42 4 0.05
43 5 0.06
44 9 0.12
45 8 0.10
46 5 0.06
47 4 0.05
48 4 0.05
49 12 0.16
ACGTcount: A:0.12, C:0.05, G:0.40, T:0.43
Consensus pattern (40 bp):
GGGTTTGGGCTTTTGTTGGGTTAGTTTAGATGGGTATTTG
Found at i:76330423 original size:18 final size:19
Alignment explanation
Indices: 76330400--76330456 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
76330390 CTTAGAAGAA
76330400 AATATATATACACAA-AAT
1 AATATATATACACAATAAT
76330418 AATATA-A-A-ATCAATAAT
1 AATATATATACA-CAATAAT
*
76330435 -ATATATATACATAATAAT
1 AATATATATACACAATAAT
76330453 AATA
1 AATA
76330457 ATAAATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
15 1 0.03
16 9 0.28
17 5 0.16
18 13 0.41
19 4 0.12
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (19 bp):
AATATATATACACAATAAT
Found at i:76330438 original size:32 final size:31
Alignment explanation
Indices: 76330400--76330497 Score: 89
Period size: 32 Copynumber: 3.3 Consensus size: 31
76330390 CTTAGAAGAA
76330400 AATATATATACACAAAATAATATAAAATCAAT
1 AATATATATACACAAAATAATA-AAAATCAAT
* *
76330432 AATATATATATAC---ATAATAATAAT-AAT
1 AATATATATACACAAAATAATAAAAATCAAT
* * *
76330459 AA-ATATTTACATAAAATAATAGGAAATCAAT
1 AATATATATACACAAAATAATA-AAAATCAAT
*
76330490 AATGTATA
1 AATATATA
76330498 CTTAGAATAA
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
26 7 0.14
27 5 0.10
28 4 0.08
29 12 0.24
30 3 0.06
31 5 0.10
32 15 0.29
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (31 bp):
AATATATATACACAAAATAATAAAAATCAAT
Found at i:76330456 original size:24 final size:23
Alignment explanation
Indices: 76330421--76330479 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 23
76330411 ACAAAATAAT
*
76330421 ATAAAATCAATAATATATATATAC
1 ATAAAAT-AATAATAAATATATAC
*
76330445 ATAATAATAATAATAAATATTTAC
1 ATAA-AATAATAATAAATATATAC
76330469 ATAAAATAATA
1 ATAAAATAATA
76330480 GGAAATCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 7 0.22
24 22 0.69
25 3 0.09
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (23 bp):
ATAAAATAATAATAAATATATAC
Found at i:76333590 original size:19 final size:19
Alignment explanation
Indices: 76333566--76333615 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
76333556 TTGTATTCTT
76333566 TCATACTTTTGA-AATTTAA
1 TCATACTTTT-ATAATTTAA
*
76333585 TCATACTTCTATAATTTAA
1 TCATACTTTTATAATTTAA
76333604 TCATACTTTTAT
1 TCATACTTTTAT
76333616 GTTTAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 1 0.04
19 27 0.96
ACGTcount: A:0.34, C:0.14, G:0.02, T:0.50
Consensus pattern (19 bp):
TCATACTTTTATAATTTAA
Found at i:76336688 original size:46 final size:46
Alignment explanation
Indices: 76336638--76336729 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
76336628 GTGCATCTTG
* * *
76336638 GGATGGAAACAATGGGCTGGACCAATTTTAAGTGGTTTTAAGCTTA
1 GGATGGAAACAATGGGCTGGACCAAGTTTAAATGGTTTTAAACTTA
* *
76336684 GGATGGAAACAATGGGCTGGATCTAGTTTAAATGGTTTTAAACTTA
1 GGATGGAAACAATGGGCTGGACCAAGTTTAAATGGTTTTAAACTTA
76336730 AAGATAATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.32
Consensus pattern (46 bp):
GGATGGAAACAATGGGCTGGACCAAGTTTAAATGGTTTTAAACTTA
Found at i:76339545 original size:5 final size:5
Alignment explanation
Indices: 76339535--76339601 Score: 73
Period size: 5 Copynumber: 13.4 Consensus size: 5
76339525 AAGAAAATAT
* * *
76339535 TATTA TATTA TATTA TATTA TATTA TATTA CATTA TATGTA AAATA TA-TA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT-TA TATTA TATTA
* *
76339585 TCTTA TATTA TAATA TA
1 TATTA TATTA TATTA TA
76339602 ATAAAAATAA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
4 3 0.06
5 46 0.88
6 3 0.06
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.52
Consensus pattern (5 bp):
TATTA
Found at i:76339689 original size:13 final size:14
Alignment explanation
Indices: 76339673--76339707 Score: 63
Period size: 13 Copynumber: 2.6 Consensus size: 14
76339663 AAAATAGGGG
76339673 AAAGAAAGAAA-AA
1 AAAGAAAGAAACAA
76339686 AAAGAAAGAAACAA
1 AAAGAAAGAAACAA
76339700 AAAGAAAG
1 AAAGAAAG
76339708 GAGAAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAGAAAGAAACAA
Found at i:76339694 original size:17 final size:18
Alignment explanation
Indices: 76339672--76339707 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
76339662 CAAAATAGGG
*
76339672 GAAAGAAAGAAAAA-AAA
1 GAAAGAAACAAAAAGAAA
76339689 GAAAGAAACAAAAAGAAA
1 GAAAGAAACAAAAAGAAA
76339707 G
1 G
76339708 GAGAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (18 bp):
GAAAGAAACAAAAAGAAA
Found at i:76339847 original size:18 final size:18
Alignment explanation
Indices: 76339821--76339855 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
76339811 TGATTTATAT
76339821 TGAAATTTTAGAAGTTGG
1 TGAAATTTTAGAAGTTGG
*
76339839 TGAATTTTTAGAAGTTG
1 TGAAATTTTAGAAGTTG
76339856 ATCATGATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (18 bp):
TGAAATTTTAGAAGTTGG
Found at i:76341945 original size:22 final size:21
Alignment explanation
Indices: 76341915--76341980 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
76341905 TACAAATTAA
76341915 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
76341937 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
76341958 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
76341977 ATCT
1 ATCT
76341981 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:76341967 original size:19 final size:19
Alignment explanation
Indices: 76341932--76342029 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
76341922 AGATTACAAG
76341932 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
76341953 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76341972 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
76341989 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76342008 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76342027 ATC
1 ATC
76342030 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:76341996 original size:36 final size:37
Alignment explanation
Indices: 76341932--76342029 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
76341922 AGATTACAAG
76341932 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
76341972 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
76342008 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
76342030 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:76342868 original size:176 final size:175
Alignment explanation
Indices: 76342472--76342977 Score: 737
Period size: 176 Copynumber: 2.9 Consensus size: 175
76342462 CGTAAACACG
* * * * * *
76342472 TGAAAGCCAAATCTGCTGTGTCTTCAATTTGCTCATTGTGAACACAAGGATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
76342537 GATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTC-AAAATGG
66 GATCTGCTTCAGTAAAA-CATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
* *
76342601 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
130 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* * *
76342647 CGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGCAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
76342712 GATCTGATTCAGTATAAACATCTGAAGGTTAGATCTACTATGTGTCTGCTCTCCGTCGAATATGG
66 GATCTGCTTCAGTA-AAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
* *
76342777 AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATT
130 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
*
76342823 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
76342888 GATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTTCGTCGAA
66 GATCTGCTTCAGT-AAAACATCTGAAGGTTAGATCTGCTATG---T-G-TCTGCTCTCCGTCGAA
*
76342953 TATGGAGATGCCAAATCTGTT-TCTT
125 TATGGAGATGCCAGATCTGTTATCTT
76342978 CAATTTGTTC
Statistics
Matches: 296, Mismatches: 27, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
175 106 0.36
176 150 0.51
177 1 0.00
179 1 0.00
180 5 0.02
181 33 0.11
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (175 bp):
TGAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGA
GATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
Found at i:76343274 original size:84 final size:84
Alignment explanation
Indices: 76343109--76343691 Score: 853
Period size: 84 Copynumber: 7.0 Consensus size: 84
76343099 ATCATCTTAA
* * * * *
76343109 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTATTGCTTA-AG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
*
76343172 AGATCTTCAAATTTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * *
76343194 ACCCTAGTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
76343259 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
76343278 ACCCTACTGCTTAGGGGATTAAGGCGAGT-TGTCGACGATCTGCTCCGCTACTGCTTAGGGAGAT
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCT-T---CGATCTGCTCCACTACTGCTTAGGGAGAT
* *
76343342 AAAATCTGC-----GAACCTGTT
62 AAGATCTGCAAATTTAACCTGTT
76343360 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
76343425 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
76343444 ACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
76343509 TTTGCAAATTTAACCTGCT
66 TCTGCAAATTTAACCTGTT
76343528 ACCCTACTGC-TAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
76343592 TCTGCAAATTTAACCCGTT
66 TCTGCAAATTTAACCTGTT
* *
76343611 ACCCTACTGCTTAGGGGATTAATGCGAGTCTTCGATCTGCTCTACT-CTTGCTTAGGGAGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTAC-TGCTTAGGGAGATAAG
76343675 ATCTGCAAATTTAACCT
65 ATCTGCAAATTTAACCT
76343692 TAAAATGATA
Statistics
Matches: 454, Mismatches: 30, Indels: 29
0.88 0.06 0.06
Matches are distributed among these distances:
79 36 0.08
82 62 0.14
83 82 0.18
84 216 0.48
85 23 0.05
87 35 0.08
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:76343614 original size:167 final size:168
Alignment explanation
Indices: 76343109--76343691 Score: 853
Period size: 167 Copynumber: 3.5 Consensus size: 168
76343099 ATCATCTTAA
* * * * *
76343109 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTATTGCTTA-AG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* * * *
76343172 AGATCTTCAAATTTAACCTGTTACCCTAGTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCC
63 AGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCC
76343237 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
128 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
*
76343278 ACCCTACTGCTTAGGGGATTAAGGCGAGT-TGTCGACGATCTGCTCCGCTACTGCTTAGGGAGAT
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCT-T---CGATCTGCTCCACTACTGCTTAGGGAGAT
* *
76343342 AAAATCTGC-----GAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTC
62 AAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTC
76343402 CACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
127 CACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
* *
76343444 ACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
76343509 TTTGCAAATTTAACCTGCTACCCTACTGC-TAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACT
66 TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACT
*
76343573 ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCCGTT
131 ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
* *
76343611 ACCCTACTGCTTAGGGGATTAATGCGAGTCTTCGATCTGCTCTACT-CTTGCTTAGGGAGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTAC-TGCTTAGGGAGATAAG
76343675 ATCTGCAAATTTAACCT
65 ATCTGCAAATTTAACCT
76343692 TAAAATGATA
Statistics
Matches: 380, Mismatches: 21, Indels: 28
0.89 0.05 0.07
Matches are distributed among these distances:
163 34 0.09
165 1 0.00
166 122 0.32
167 149 0.39
168 18 0.05
169 45 0.12
170 1 0.00
171 10 0.03
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (168 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACT
ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
Done.