Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 231 of 276
Found at i:76646977 original size:16 final size:17
Alignment explanation
Indices: 76646956--76646992 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
76646946 GTATTAACCT
*
76646956 AAATAATTTATAAA-TA
1 AAATAATATATAAATTA
76646972 AAATAATATATAAATTA
1 AAATAATATATAAATTA
76646989 AAAT
1 AAAT
76646993 TTGAATAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAATAATATATAAATTA
Found at i:76647093 original size:22 final size:20
Alignment explanation
Indices: 76647068--76647131 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
76647058 CAGAATAAAA
76647068 AATAAATTTATAATTAAATACT
1 AATAAATTT-TAATTAAATA-T
*
76647090 AAT-AATTTTATTTAAATAT
1 AATAAATTTTAATTAAATAT
* * *
76647109 ATTAAATATTAATTAATTAT
1 AATAAATTTTAATTAAATAT
76647129 AAT
1 AAT
76647132 TATTATATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.09
20 24 0.69
21 5 0.14
22 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
AATAAATTTTAATTAAATAT
Found at i:76647112 original size:29 final size:28
Alignment explanation
Indices: 76647072--76647153 Score: 76
Period size: 29 Copynumber: 2.9 Consensus size: 28
76647062 ATAAAAAATA
* *
76647072 AATTTATA-ATTAAATACTAATAATTTT
1 AATTAATATATTAAATACTAATAATTAT
* *
76647099 ATTTAAATATATTAAATATTAATTAATTAT
1 AATT-AATATATTAAATACTAA-TAATTAT
* *
76647129 AATTATTATATATAATTACTAATAA
1 AATTAATATAT-TAAATACTAATAA
76647154 CTCTCATGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
27 3 0.07
28 3 0.07
29 20 0.47
30 17 0.40
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
AATTAATATATTAAATACTAATAATTAT
Found at i:76653802 original size:28 final size:30
Alignment explanation
Indices: 76653753--76653815 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 30
76653743 GCATCATTAT
* * *
76653753 AATTTTTCCAAATTTGAGGGCGTTA-CTGC
1 AATTTTACCAAAATTGAGGGCGTCACCTGC
76653782 AATTTTACCAAAATTG-GGGCGTCACCTGC
1 AATTTTACCAAAATTGAGGGCGTCACCTGC
76653811 AATTT
1 AATTT
76653816 CCTTACGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 7 0.23
29 23 0.77
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (30 bp):
AATTTTACCAAAATTGAGGGCGTCACCTGC
Found at i:76658082 original size:46 final size:46
Alignment explanation
Indices: 76658022--76658295 Score: 451
Period size: 46 Copynumber: 6.0 Consensus size: 46
76658012 TTTGACATGA
* * * * * *
76658022 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** *
76658068 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76658114 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76658160 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76658206 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76658252 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
76658296 AGAGCACACT
Statistics
Matches: 218, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 4 0.02
46 214 0.98
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:76660441 original size:11 final size:11
Alignment explanation
Indices: 76660425--76660472 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
76660415 CTTTATATAC
76660425 TAATAAAATAA
1 TAATAAAATAA
76660436 TAATAAAATATA
1 TAATAAAATA-A
* *
76660448 TTATTAAAATAT
1 -TAATAAAATAA
76660460 TAATAAAATAA
1 TAATAAAATAA
76660471 TA
1 TA
76660473 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 21 0.68
12 1 0.03
13 9 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:76660455 original size:24 final size:24
Alignment explanation
Indices: 76660419--76660474 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
76660409 TTCTTTCTTT
*
76660419 ATATACTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* *
76660443 ATATATTATTAAAATATTAATAAA
1 ATATATTAATAAAATAATAATAAA
76660467 ATAATATT
1 AT-ATATT
76660475 TATCTAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:76663796 original size:49 final size:49
Alignment explanation
Indices: 76663727--76663983 Score: 184
Period size: 49 Copynumber: 5.1 Consensus size: 49
76663717 AAGAATGTAT
*
76663727 TATGATGCATGAACAATAGTACTTAGTTTAATGTATGGCACGTATGATG
1 TATGATGCATGAACAATAGTACTTAGTTTAATGTATGGCATGTATGATG
* * *
76663776 TATGATGCATGAACAGTAGTATTTAG-TTAAAGTAT-GCATG---GCATG
1 TATGATGCATGAACAATAGTACTTAGTTTAATGTATGGCATGTATG-ATG
* ** * * ***
76663821 GATGATGCAAAAAGAACGTA-TAATTCATGGACAATAGTACTTGGCTTAATGTATGGCATG
1 TATGATGCATGAACAA--TAGTACTT-A-GTTTAAT-GTA--TGGC---ATGTAT-G-ATG
* * *
76663881 TATGATTCATGAACAATAGTACTTAGTTTAATGTATGCCATGCATGATG
1 TATGATGCATGAACAATAGTACTTAGTTTAATGTATGGCATGTATGATG
* * *
76663930 TATGATACATGAACAATAGTACTCAGTTTAATGTATGGCATGTCTGATG
1 TATGATGCATGAACAATAGTACTTAGTTTAATGTATGGCATGTATGATG
*
76663979 CATGA
1 TATGA
76663984 ACGATAGTAC
Statistics
Matches: 160, Mismatches: 30, Indels: 36
0.71 0.13 0.16
Matches are distributed among these distances:
44 1 0.01
45 14 0.09
46 4 0.03
47 7 0.04
48 9 0.06
49 77 0.48
50 4 0.03
51 5 0.03
52 1 0.01
53 2 0.01
54 3 0.02
56 6 0.04
57 4 0.03
58 3 0.02
59 4 0.03
60 16 0.10
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (49 bp):
TATGATGCATGAACAATAGTACTTAGTTTAATGTATGGCATGTATGATG
Found at i:76663902 original size:42 final size:42
Alignment explanation
Indices: 76663838--76663998 Score: 178
Period size: 42 Copynumber: 3.7 Consensus size: 42
76663828 CAAAAAGAAC
* * * *
76663838 GTATAATTCATGGACAATAGTACTTGGCTTAATGTATGGCAT
1 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
76663880 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGCCATGCATGAT
1 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATG----GC---AT
* *
76663929 GTATGATACATGAACAATAGTACTCAGTTTAATGTATGGCAT
1 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
* * *
76663971 GTCTGATGCATGAACGATAGTACTTAGT
1 GTATGATTCATGAACAATAGTACTTAGT
76663999 AAAAAGCATG
Statistics
Matches: 102, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
42 60 0.59
45 2 0.02
46 2 0.02
49 38 0.37
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.35
Consensus pattern (42 bp):
GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
Found at i:76671128 original size:18 final size:18
Alignment explanation
Indices: 76671105--76671197 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
76671095 CCCAACTACT
*
76671105 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
76671123 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
76671141 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
76671159 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
76671177 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
76671195 GTA
1 GTA
76671198 AACGGTCGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:76671157 original size:36 final size:36
Alignment explanation
Indices: 76671105--76671197 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
76671095 CCCAACTACT
*
76671105 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
76671141 GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
76671177 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
76671198 AACGGTCGTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:76671758 original size:11 final size:11
Alignment explanation
Indices: 76671731--76671773 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
76671721 TGACCTTTCC
76671731 AAGGTATGGG-
1 AAGGTATGGGA
*
76671741 TAGGTATGGGA
1 AAGGTATGGGA
*
76671752 AAGGTATGGGC
1 AAGGTATGGGA
76671763 AAGGTATGGGA
1 AAGGTATGGGA
76671774 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:76671770 original size:22 final size:21
Alignment explanation
Indices: 76671731--76671773 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
76671721 TGACCTTTCC
*
76671731 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
76671752 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
76671774 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:76676930 original size:16 final size:19
Alignment explanation
Indices: 76676911--76676949 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
76676901 GCAAAAAATA
76676911 TTTTTAA-A-ATA-TTAAT
1 TTTTTAATATATATTTAAT
76676927 TTTTTAATATATATTTAAT
1 TTTTTAATATATATTTAAT
76676946 TTTT
1 TTTT
76676950 AAATTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 1 0.05
18 3 0.15
19 9 0.45
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTTAATATATATTTAAT
Found at i:76676948 original size:18 final size:15
Alignment explanation
Indices: 76676910--76676952 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 15
76676900 TGCAAAAAAT
76676910 ATTTTTAAAATATTA
1 ATTTTTAAAATATTA
76676925 ATTTTTTAATATATATTTA
1 A-TTTTTAA-A-ATA-TTA
76676944 ATTTTTAAA
1 ATTTTTAAA
76676953 TTCTTTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 1 0.04
16 7 0.29
17 2 0.08
18 10 0.42
19 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTTAAAATATTA
Found at i:76680189 original size:3 final size:3
Alignment explanation
Indices: 76680181--76680263 Score: 66
Period size: 3 Copynumber: 27.3 Consensus size: 3
76680171 GAGGGCATAT
*
76680181 ATA ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATG ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -ATA AT-A ATA ATA
* *
76680228 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
76680264 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
2 8 0.12
3 46 0.71
4 11 0.17
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:76680192 original size:8 final size:8
Alignment explanation
Indices: 76680179--76680263 Score: 61
Period size: 8 Copynumber: 10.1 Consensus size: 8
76680169 GAGAGGGCAT
76680179 ATATAATA
1 ATATAATA
76680187 ATATAATA
1 ATATAATA
76680195 ATATAAATA
1 ATAT-AATA
76680204 ATAATATATA
1 AT-ATA-ATA
76680214 CATGAT-A-A
1 -AT-ATAATA
76680222 ATAATAATA
1 AT-ATAATA
76680231 ATATAAATA
1 ATAT-AATA
76680240 ATAGTAA-A
1 ATA-TAATA
76680248 A-ATAATA
1 ATATAATA
*
76680255 AAATAATA
1 ATATAATA
76680263 A
1 A
76680264 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 2, Indels: 20
0.75 0.02 0.23
Matches are distributed among these distances:
6 3 0.05
7 7 0.11
8 25 0.38
9 20 0.31
10 6 0.09
11 4 0.06
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (8 bp):
ATATAATA
Found at i:76680251 original size:24 final size:23
Alignment explanation
Indices: 76680181--76680260 Score: 85
Period size: 22 Copynumber: 3.5 Consensus size: 23
76680171 GAGGGCATAT
76680181 ATAATAATAT-AATAATATAAATA
1 ATAATAATATAAATAATATAAA-A
* * *
76680204 ATAAT-ATATACATGATA-AATA
1 ATAATAATATAAATAATATAAAA
76680225 ATAATAATATAAATAATAGTAAAA
1 ATAATAATATAAATAATA-TAAAA
*
76680249 ATAATAAAATAA
1 ATAATAATATAA
76680261 TAAAACAAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
21 6 0.13
22 16 0.35
23 10 0.22
24 14 0.30
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (23 bp):
ATAATAATATAAATAATATAAAA
Found at i:76680682 original size:13 final size:13
Alignment explanation
Indices: 76680664--76680743 Score: 98
Period size: 13 Copynumber: 6.5 Consensus size: 13
76680654 ACTGGTTGGG
76680664 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
76680677 GTGGTTTAGTAGG-
1 GTGGTTTAGT-GGA
76680690 GTGG-TT-G-GG-
1 GTGGTTTAGTGGA
*
76680699 GTGGTTTAGTAGA
1 GTGGTTTAGTGGA
*
76680712 GTGGTTTAGTGTA
1 GTGGTTTAGTGGA
76680725 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
76680738 GTGGTT
1 GTGGTT
76680744 AGAGTGGTTG
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
9 6 0.10
10 2 0.03
11 2 0.03
12 3 0.05
13 43 0.74
14 2 0.03
ACGTcount: A:0.14, C:0.00, G:0.46, T:0.40
Consensus pattern (13 bp):
GTGGTTTAGTGGA
Found at i:76680716 original size:48 final size:44
Alignment explanation
Indices: 76680656--76680774 Score: 141
Period size: 48 Copynumber: 2.6 Consensus size: 44
76680646 GCAAATGGAC
* * *
76680656 TGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTAGG-GTGGTTGGGG
1 TGGTTGGAGTGGTTTAGTGGAGTGGTTTAGT-GGAGTGGTTAGAG
*
76680700 TGGTTTAGTAGAGTGGTTTAGTGTAGTGGTTTAGTGGAGTGGTTAGAG
1 TGG-TT-G--GAGTGGTTTAGTGGAGTGGTTTAGTGGAGTGGTTAGAG
*
76680748 TGGTTGGAGTAGTTTAGTGGAGTGGTT
1 TGGTTGGAGTGGTTTAGTGGAGTGGTT
76680775 GGAGTGGTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
44 22 0.34
45 2 0.03
46 2 0.03
47 4 0.06
48 34 0.53
ACGTcount: A:0.14, C:0.00, G:0.47, T:0.39
Consensus pattern (44 bp):
TGGTTGGAGTGGTTTAGTGGAGTGGTTTAGTGGAGTGGTTAGAG
Found at i:76680729 original size:35 final size:35
Alignment explanation
Indices: 76680656--76680730 Score: 116
Period size: 35 Copynumber: 2.1 Consensus size: 35
76680646 GCAAATGGAC
* *
76680656 TGGTTGGGGTGGTTTAGTGGAGTGGTTTAGTAGGG
1 TGGTTGGGGTGGTTTAGTAGAGTGGTTTAGTAGAG
76680691 TGGTTGGGGTGGTTTAGTAGAGTGGTTTAGT-GTAG
1 TGGTTGGGGTGGTTTAGTAGAGTGGTTTAGTAG-AG
76680726 TGGTT
1 TGGTT
76680731 TAGTGGAGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 1 0.03
35 36 0.97
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (35 bp):
TGGTTGGGGTGGTTTAGTAGAGTGGTTTAGTAGAG
Found at i:76680770 original size:22 final size:22
Alignment explanation
Indices: 76680745--76680788 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
76680735 GGAGTGGTTA
76680745 GAGTGGTTGGAGTAGTTTAGTG
1 GAGTGGTTGGAGTAGTTTAGTG
*
76680767 GAGTGGTTGGAGTGGTTTAGTG
1 GAGTGGTTGGAGTAGTTTAGTG
76680789 AAGTAAAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (22 bp):
GAGTGGTTGGAGTAGTTTAGTG
Found at i:76681297 original size:132 final size:132
Alignment explanation
Indices: 76681048--76681396 Score: 610
Period size: 132 Copynumber: 2.7 Consensus size: 132
76681038 TTGAGTTCTT
* * * *
76681048 GATCTGCT-TCTTCGATCTGTTCCCCATAAACACAAAGATGCCAAATCTGCTGTCTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAAGGATGCCAAATCTGCTGTTTTCAACTTGT
*
76681112 TCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGT
76681177 CA
131 CA
*
76681179 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACATGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAAGGATGCCAAATCTGCTGTTTTCAACTTGT
* *
76681244 TCCCTATAAGCACAGGGATGCCGTGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGT
76681309 CA
131 CA
*
76681311 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAAGGATGCCAAATCTGCTGTTTTCAACTTGT
76681376 TCCCTATAAGCACAGGGATGC
66 TCCCTATAAGCACAGGGATGC
76681397 TGCAACACCC
Statistics
Matches: 208, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
131 8 0.04
132 200 0.96
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (132 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAAGGATGCCAAATCTGCTGTTTTCAACTTGT
TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGT
CA
Found at i:76681395 original size:44 final size:44
Alignment explanation
Indices: 76681049--76681396 Score: 309
Period size: 44 Copynumber: 7.9 Consensus size: 44
76681039 TGAGTTCTTG
* * **
76681049 ATCTGCT-TCTTCGATCTGTTCCCCATAAACACAAAGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
76681092 ATCTGCTGTCTTC-AACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * *
76681134 ATGCTGAAATCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
*
76681180 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACATGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
76681224 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * * *
76681266 GTGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
76681312 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
76681356 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGC
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGC
76681397 TGCAACACCC
Statistics
Matches: 243, Mismatches: 46, Indels: 31
0.76 0.14 0.10
Matches are distributed among these distances:
42 3 0.01
43 34 0.14
44 171 0.70
45 32 0.13
46 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:76684022 original size:44 final size:44
Alignment explanation
Indices: 76683931--76684295 Score: 312
Period size: 44 Copynumber: 8.3 Consensus size: 44
76683921 NCATGCTGAA
* * * * * * *
76683931 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCT
1 ATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACT
76683976 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACT
1 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACT
* * * **
76684020 ATCTT-TAACTTGTTCCCTATAAGCACAGGGATACC--ATGCTAAA
1 ATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CTACT
** * * * *
76684063 ATCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTACT
1 ATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACT
*
76684108 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
1 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACT
* * * *
76684152 GTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGA-A
1 ATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CT-ACT
* * * * *
76684195 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACT
1 ATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACT
* * * *
76684240 ATCGTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCA
1 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACT
*
76684284 ATCTTCAATCTG
1 ATCTTCGATCTG
76684296 CTCTCCGCCG
Statistics
Matches: 253, Mismatches: 53, Indels: 29
0.76 0.16 0.09
Matches are distributed among these distances:
42 4 0.02
43 22 0.09
44 183 0.72
45 40 0.16
46 4 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACT
Found at i:76684291 original size:132 final size:132
Alignment explanation
Indices: 76683922--76684291 Score: 632
Period size: 132 Copynumber: 2.8 Consensus size: 132
76683912 NNNNNNNNNN
* *
76683922 CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTATCTTCGATCT
1 CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCT
* *
76683987 GTTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTTAACTTGTTCCCTATAAGCACAGGGAT
66 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGAT
76684052 AC
131 AC
* *
76684054 CATGCTAAAATCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCT
1 CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCT
* *
76684119 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
66 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGAT
*
76684184 GC
131 AC
*
76684186 CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCGTCGATCT
1 CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCT
* *
76684251 GTTCCCTATAAACACAGGGATGCCAAATCTGCAATCTTCAA
66 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAA
76684292 TCTGCTCTCC
Statistics
Matches: 222, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 222 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCT
GTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGAT
AC
Found at i:76684638 original size:205 final size:205
Alignment explanation
Indices: 76684310--76684795 Score: 774
Period size: 205 Copynumber: 2.4 Consensus size: 205
76684300 CCGCCGCTAT
* * *
76684310 AGAGACGCCAAATTATCTTGGATTTGCTTTAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
* * *
76684375 TCGATTTGCTCCTTGTAAGCACAAGGATGGCAAACCATCTTGGATCTGCTTCAGTATAAACATTT
66 TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
*
76684440 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
131 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTATTCT
76684505 CTGACAATAC
196 CTGACAATAC
* *
76684515 AGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCATGTGAAAGCCAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
* * *
76684580 TTGATTTTCTCCTTGTAAGCATAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
66 TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
* * * * *
76684645 GAAGGTTGGATCTGCTATGTGTCTGCCTTCCGTCGAAGTGGAGATGCTAGACTTCGATTTATTCT
131 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTATTCT
76684710 CTGACAATAC
196 CTGACAATAC
* * *
76684720 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTAAAAGCTAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
* *
76684785 TCAATCTGCTC
66 TCGATTTGCTC
76684796 TCCGCCTGAT
Statistics
Matches: 255, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
205 255 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (205 bp):
AGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTATTCT
CTGACAATAC
Found at i:76686198 original size:21 final size:20
Alignment explanation
Indices: 76686174--76686223 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
76686164 TTTTTTTCCC
*
76686174 TTTTTTTTTAGAATTTTTTG
1 TTTTTTTTTTGAATTTTTTG
**
76686194 TTTTTTGTTTTGTTTTTTTTG
1 TTTTTT-TTTTGAATTTTTTG
76686215 TGTTTTTTT
1 T-TTTTTTT
76686224 AGGGTTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 6 0.24
21 14 0.56
22 5 0.20
ACGTcount: A:0.06, C:0.00, G:0.12, T:0.82
Consensus pattern (20 bp):
TTTTTTTTTTGAATTTTTTG
Found at i:76686204 original size:12 final size:11
Alignment explanation
Indices: 76686187--76686223 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
76686177 TTTTTTAGAA
76686187 TTTTTTGTTTT
1 TTTTTTGTTTT
76686198 TTGTTTTGTTTT
1 TT-TTTTGTTTT
*
76686210 TTTTGTGTTTT
1 TTTTTTGTTTT
76686221 TTT
1 TTT
76686224 AGGGTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:76692320 original size:22 final size:22
Alignment explanation
Indices: 76692290--76692341 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
76692280 CAGGCAAATG
*
76692290 GAGTGGTTTAGTAGG-GTGGTTG
1 GAGTGGTTTAGT-GGAGTGGTTA
*
76692312 GGGTGGTTTAGTGGAGTGGTTA
1 GAGTGGTTTAGTGGAGTGGTTA
76692334 GAGTGGTT
1 GAGTGGTT
76692342 GGAGTAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 2 0.08
22 24 0.92
ACGTcount: A:0.13, C:0.00, G:0.50, T:0.37
Consensus pattern (22 bp):
GAGTGGTTTAGTGGAGTGGTTA
Found at i:76692343 original size:31 final size:31
Alignment explanation
Indices: 76692305--76692372 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
76692295 GTTTAGTAGG
* *
76692305 GTGGTTGGGGTGGTTTAGTGGAGTGGTTAGA
1 GTGGTTGGAGTAGTTTAGTGGAGTGGTTAGA
*
76692336 GTGGTTGGAGTAGTTTAGTGGAGTGGTTGGA
1 GTGGTTGGAGTAGTTTAGTGGAGTGGTTAGA
76692367 GTGGTT
1 GTGGTT
76692373 TAGTGGAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.13, C:0.00, G:0.50, T:0.37
Consensus pattern (31 bp):
GTGGTTGGAGTAGTTTAGTGGAGTGGTTAGA
Found at i:76692359 original size:22 final size:22
Alignment explanation
Indices: 76692334--76692381 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
76692324 GGAGTGGTTA
76692334 GAGTGGTTGGAGTAGTTTAGTG
1 GAGTGGTTGGAGTAGTTTAGTG
*
76692356 GAGTGGTTGGAGTGGTTTAGTG
1 GAGTGGTTGGAGTAGTTTAGTG
76692378 GAGT
1 GAGT
76692382 AAAGATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.48, T:0.35
Consensus pattern (22 bp):
GAGTGGTTGGAGTAGTTTAGTG
Found at i:76695259 original size:101 final size:101
Alignment explanation
Indices: 76695083--76695268 Score: 237
Period size: 101 Copynumber: 1.8 Consensus size: 101
76695073 ATAAGACTAC
* * * * * *
76695083 GGTTGGACCATGACAATGTTTATATGTAAGACCATAGCCAGGTTATGACATTTTAATGAAAAAAC
1 GGTTGGACCATGACAATATTTATAAGGAAGACCATAGCCAGGCTATGACATTCTAACGAAAAAAC
76695148 CATAACTGGGTTATGACACTCTGAACGCAAAACCAT
66 CATAACTGGGTTATGACACTCTGAACGCAAAACCAT
* * ** * * *
76695184 GGTTGGACCATGATAGTATTTATAAGGAAGACCATAGCTGGGCTATGGCATTCTAACGATAAGAC
1 GGTTGGACCATGACAATATTTATAAGGAAGACCATAGCCAGGCTATGACATTCTAACGAAAAAAC
* *
76695249 CATAATTGGGTTATGGCACT
66 CATAACTGGGTTATGACACT
76695269 ACGAATGTAA
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (101 bp):
GGTTGGACCATGACAATATTTATAAGGAAGACCATAGCCAGGCTATGACATTCTAACGAAAAAAC
CATAACTGGGTTATGACACTCTGAACGCAAAACCAT
Found at i:76695284 original size:101 final size:101
Alignment explanation
Indices: 76695074--76695287 Score: 232
Period size: 101 Copynumber: 2.1 Consensus size: 101
76695064 AATTGATAGA
* * * * * * *
76695074 TAAGACTACGGTTGGACCATGACAATGTTTATATGTAAGACCATAGCCAGGTTATGACATTTTAA
1 TAAGACCATGGTTGGACCATGACAATATTTATAAGGAAGACCATAGCCAGGCTATGACATTCTAA
*
76695139 TGAAAAAACCATAACTGGGTTATGACACTCTGAACG
66 CGAAAAAACCATAACTGGGTTATGACACTCTGAACG
* * * * ** *
76695175 CAAAACCATGGTTGGACCATGATAGTATTTATAAGGAAGACCATAGCTGGGCTATGGCATTCTAA
1 TAAGACCATGGTTGGACCATGACAATATTTATAAGGAAGACCATAGCCAGGCTATGACATTCTAA
* * * * *
76695240 CGATAAGACCATAATTGGGTTATGGCACTAC-GAATG
66 CGAAAAAACCATAACTGGGTTATGACACT-CTGAACG
76695276 TAAGACCATGGT
1 TAAGACCATGGT
76695288 CGGGCCTTGG
Statistics
Matches: 90, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
101 89 0.99
102 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGACAATATTTATAAGGAAGACCATAGCCAGGCTATGACATTCTAA
CGAAAAAACCATAACTGGGTTATGACACTCTGAACG
Found at i:76696757 original size:37 final size:37
Alignment explanation
Indices: 76696706--76696786 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
76696696 TTGAGAGAAT
*
76696706 TTTGTCAGAAAATCTTTACTGTTCATCTCCATCTCATC
1 TTTGT-AGAAAATCTTTACTATTCATCTCCATCTCATC
* **
76696744 TTTGTAGAAAATCTTTACTATTCATCTTCATCTTTTC
1 TTTGTAGAAAATCTTTACTATTCATCTCCATCTCATC
76696781 TTTGTA
1 TTTGTA
76696787 AGAATCACTC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 34 0.87
38 5 0.13
ACGTcount: A:0.23, C:0.21, G:0.07, T:0.48
Consensus pattern (37 bp):
TTTGTAGAAAATCTTTACTATTCATCTCCATCTCATC
Found at i:76711778 original size:24 final size:25
Alignment explanation
Indices: 76711738--76711786 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
76711728 GAGAATGGAT
76711738 ATTCTGCTAAAATAATTTT-TCTCA
1 ATTCTGCTAAAATAATTTTGTCTCA
*
76711762 ATTCTGTCTACAA-AATTTTGTCTCA
1 ATTCTG-CTAAAATAATTTTGTCTCA
76711787 TTTGCATTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.31, C:0.18, G:0.06, T:0.45
Consensus pattern (25 bp):
ATTCTGCTAAAATAATTTTGTCTCA
Found at i:76713048 original size:22 final size:24
Alignment explanation
Indices: 76712986--76713049 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 24
76712976 ATAGTATTTG
76712986 AAATATATACATAA-AATAGTAAA
1 AAATATATACATAATAATAGTAAA
* *
76713009 AAATATATA-ACTAGTAAT-GT-TA
1 AAATATATACA-TAATAATAGTAAA
76713031 AAATATATACATAATAATA
1 AAATATATACATAATAATA
76713050 TATATAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
22 17 0.50
23 14 0.41
24 3 0.09
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (24 bp):
AAATATATACATAATAATAGTAAA
Found at i:76713109 original size:24 final size:24
Alignment explanation
Indices: 76713082--76713136 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
76713072 AAAATGTATG
76713082 TACATAACATA-TATGAAAAATATA
1 TACATAACATAGTA-GAAAAATATA
* * *
76713106 TACATAATATAGTAGTAAAATATT
1 TACATAACATAGTAGAAAAATATA
76713130 TACATAA
1 TACATAA
76713137 TGTATACATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (24 bp):
TACATAACATAGTAGAAAAATATA
Found at i:76714492 original size:21 final size:22
Alignment explanation
Indices: 76714468--76714518 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
76714458 ATGAGTAAAT
76714468 TAAAATAAACATAT-AACA-ATC
1 TAAAATAAACATATGAA-AGATC
*
76714489 TAAAAT-AACATATGAAAGGTC
1 TAAAATAAACATATGAAAGATC
76714510 TAAAATAAA
1 TAAAATAAA
76714519 TAACAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 8 0.31
21 16 0.62
22 2 0.08
ACGTcount: A:0.61, C:0.10, G:0.06, T:0.24
Consensus pattern (22 bp):
TAAAATAAACATATGAAAGATC
Found at i:76714673 original size:25 final size:25
Alignment explanation
Indices: 76714645--76714695 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
76714635 AATAAATGAA
*
76714645 TCAAAGT-ATATGGGTATAAAATAGT
1 TCAAAGTAATATGGGT-TAAAACAGT
* *
76714670 TCAAGGTAATATGTGTTAAAACAGT
1 TCAAAGTAATATGGGTTAAAACAGT
76714695 T
1 T
76714696 TAAAATGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (25 bp):
TCAAAGTAATATGGGTTAAAACAGT
Found at i:76714937 original size:12 final size:12
Alignment explanation
Indices: 76714922--76714948 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76714912 GTAATTTGAA
76714922 ATATATATATGT
1 ATATATATATGT
76714934 ATATATATATGT
1 ATATATATATGT
76714946 ATA
1 ATA
76714949 AAAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (12 bp):
ATATATATATGT
Found at i:76720370 original size:25 final size:25
Alignment explanation
Indices: 76720342--76720406 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 25
76720332 TTAAATGATA
76720342 TATATACGTAATATATA-TAAAAATG
1 TATATAC-TAATATATATTAAAAATG
76720367 TATATA-TAATATAATATTAAAAATG
1 TATATACTAATAT-ATATTAAAAATG
76720392 T-T-TACATAATATATA
1 TATATAC-TAATATATA
76720407 CATATTAGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
23 8 0.22
24 7 0.19
25 21 0.58
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.40
Consensus pattern (25 bp):
TATATACTAATATATATTAAAAATG
Found at i:76720739 original size:23 final size:24
Alignment explanation
Indices: 76720669--76720749 Score: 80
Period size: 23 Copynumber: 3.4 Consensus size: 24
76720659 AAACAATTAT
*
76720669 TAATA-ATATTACATAAATATATACA
1 TAATATATATTA-A-AAGTATATACA
*
76720694 T-ATATATATT-AAAGATAAATACA
1 TAATATATATTAAAAG-TATATACA
*
76720717 TAATA-ATATTAAAAGTATGTACA
1 TAATATATATTAAAAGTATATACA
76720740 TAATATATAT
1 TAATATATAT
76720750 ACATAATATA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
22 2 0.04
23 25 0.53
24 14 0.30
25 6 0.13
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (24 bp):
TAATATATATTAAAAGTATATACA
Found at i:76720754 original size:13 final size:13
Alignment explanation
Indices: 76720669--76720760 Score: 58
Period size: 13 Copynumber: 7.6 Consensus size: 13
76720659 AAACAATTAT
76720669 TAATA-ATATTACA
1 TAATATATA-TACA
76720682 TAA-ATATATACA
1 TAATATATATACA
*
76720694 T-ATATATAT-TA
1 TAATATATATACA
* *
76720705 -AAGATAAATACA
1 TAATATATATACA
76720717 TAATA-ATATTA-A
1 TAATATATA-TACA
* *
76720729 -AA-GTATGTACA
1 TAATATATATACA
76720740 TAATATATATACA
1 TAATATATATACA
76720753 TAATATAT
1 TAATATAT
76720761 TAAAGATATA
Statistics
Matches: 59, Mismatches: 10, Indels: 20
0.66 0.11 0.22
Matches are distributed among these distances:
10 2 0.03
11 13 0.22
12 18 0.31
13 26 0.44
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.37
Consensus pattern (13 bp):
TAATATATATACA
Found at i:76720778 original size:15 final size:16
Alignment explanation
Indices: 76720752--76720790 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
76720742 ATATATATAC
* *
76720752 ATAATATATTAAAGAT
1 ATAATATATTAAAAAA
76720768 ATAATAT-TTAAAAAA
1 ATAATATATTAAAAAA
76720783 ATAATATA
1 ATAATATA
76720791 CATAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATAATATATTAAAAAA
Found at i:76720970 original size:12 final size:12
Alignment explanation
Indices: 76720955--76721081 Score: 70
Period size: 12 Copynumber: 10.7 Consensus size: 12
76720945 TAATAGTGAA
76720955 AATAATAAATAT
1 AATAATAAATAT
76720967 AATAATAAATAT
1 AATAATAAATAT
* *
76720979 AGTAATAGAA-AC
1 AATAATA-AATAT
* *
76720991 GATAATACTATAT
1 AATAATA-AATAT
*
76721004 AA-AATATATAT
1 AATAATAAATAT
*
76721015 -AT-ATACATAT
1 AATAATAAATAT
76721025 -ATAATAAA-AT
1 AATAATAAATAT
*
76721035 ATATACT-AATATT
1 A-ATAATAAATA-T
*
76721048 AATAATGAATAT
1 AATAATAAATAT
*
76721060 AATATTATAATACT
1 AATAATA-AATA-T
76721074 AATAATAA
1 AATAATAA
76721082 CAATATGAAA
Statistics
Matches: 89, Mismatches: 15, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
10 12 0.13
11 11 0.12
12 44 0.49
13 15 0.17
14 7 0.08
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:76721034 original size:26 final size:25
Alignment explanation
Indices: 76721002--76721087 Score: 81
Period size: 28 Copynumber: 3.4 Consensus size: 25
76720992 ATAATACTAT
76721002 ATAAAATATATATATATACATATATA
1 ATAAAATATATATATATACATA-ATA
76721028 ATAAAATATATACTAATATTA-ATAATGA
1 ATAAAATATATA-T-ATA-TACATAAT-A
*
76721056 ATATAATAT-TATA-ATAC-TAATA
1 ATAAAATATATATATATACATAATA
76721078 ATAACAATAT
1 ATAA-AATAT
76721088 GAAATTAAAG
Statistics
Matches: 52, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
22 4 0.08
23 11 0.21
24 1 0.02
25 1 0.02
26 13 0.25
27 5 0.10
28 15 0.29
29 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.37
Consensus pattern (25 bp):
ATAAAATATATATATATACATAATA
Found at i:76721046 original size:20 final size:21
Alignment explanation
Indices: 76721013--76721052 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
76721003 TAAAATATAT
76721013 ATATATACATATA-TAATAAA
1 ATATATACATATATTAATAAA
76721033 ATATATAC-TAATATTAATAA
1 ATATATACAT-ATATTAATAA
76721053 TGAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATACATATATTAATAAA
Found at i:76721196 original size:18 final size:17
Alignment explanation
Indices: 76721173--76721215 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
76721163 TATATAAAAA
* *
76721173 AATAATATTGATAATATT
1 AATAATATAGA-AATAGT
76721191 AATAATAATAGAAATAGT
1 AATAAT-ATAGAAATAGT
76721209 AATAATA
1 AATAATA
76721216 ATATTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 17 0.77
19 4 0.18
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (17 bp):
AATAATATAGAAATAGT
Found at i:76723132 original size:90 final size:86
Alignment explanation
Indices: 76722948--76723185 Score: 275
Period size: 90 Copynumber: 2.7 Consensus size: 86
76722938 ACGTGAGCCA
* * * *
76722948 AGGCTCAACTCACCTCTCGCGATATCAGTTGATTTTTGAAACTGAATTTGAAAAATAGATTCTAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTGAAATTGAAAAATAGAATCTAA
76723013 AAATACCTCGAAATATGACCCG
66 AAATACCTC-AAATATGACCCG
*
76723035 AGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAT-AAATTGAAAAAATAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAAC-TGAAATTG-AAAAATAG-AA
* *
76723099 T-TAAAAATACCTC-AGTGTGTAACCCG
61 TCTAAAAATACCTCAAATATG--ACCCG
*
76723125 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTGAAAAATA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGA--AACTGAAATTGAAAAATA
76723186 CCTCAACGTG
Statistics
Matches: 130, Mismatches: 9, Indels: 20
0.82 0.06 0.13
Matches are distributed among these distances:
87 35 0.27
88 4 0.03
89 9 0.07
90 58 0.45
91 9 0.07
92 15 0.12
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTGAAATTGAAAAATAGAATCTAA
AAATACCTCAAATATGACCCG
Found at i:76723221 original size:76 final size:76
Alignment explanation
Indices: 76723124--76723389 Score: 523
Period size: 76 Copynumber: 3.5 Consensus size: 76
76723114 TGTGTAACCC
76723124 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTGAAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTGAAAAATACCT
76723189 CAACGTGTCTT
66 CAACGTGTCTT
76723200 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTGAAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTGAAAAATACCT
76723265 CAACGTGTCTT
66 CAACGTGTCTT
76723276 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTGAAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTGAAAAATACCT
76723341 CAACGTGTCTT
66 CAACGTGTCTT
*
76723352 GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
76723390 GAAAACAAAA
Statistics
Matches: 189, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 189 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (76 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTGAAAAATACCT
CAACGTGTCTT
Found at i:76731738 original size:22 final size:22
Alignment explanation
Indices: 76731707--76731751 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
76731697 AGTGAATGAA
*
76731707 TGAATGAATGACAAATGAATGT
1 TGAATAAATGACAAATGAATGT
*
76731729 TGAATAAATGACGAATGAATGT
1 TGAATAAATGACAAATGAATGT
76731751 T
1 T
76731752 AGTCATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATGT
Found at i:76732262 original size:21 final size:21
Alignment explanation
Indices: 76732238--76732299 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
76732228 ACAGTTTCAT
76732238 ACTCAGCATTCTTCTTTCTTA
1 ACTCAGCATTCTTCTTTCTTA
* * *
76732259 ACTC--TA-TCAT-TTTCAT-
1 ACTCAGCATTCTTCTTTCTTA
76732275 ACTCAGCATTCTTCTTTCTTA
1 ACTCAGCATTCTTCTTTCTTA
76732296 ACTC
1 ACTC
76732300 TATCATAGCA
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
16 4 0.13
17 5 0.17
18 4 0.13
19 4 0.13
20 5 0.17
21 8 0.27
ACGTcount: A:0.21, C:0.29, G:0.03, T:0.47
Consensus pattern (21 bp):
ACTCAGCATTCTTCTTTCTTA
Found at i:76732273 original size:37 final size:37
Alignment explanation
Indices: 76732232--76732305 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
76732222 GCAGTCACAG
76732232 TTTCATACTCAGCATTCTTCTTTCTTAACTCTATCAT
1 TTTCATACTCAGCATTCTTCTTTCTTAACTCTATCAT
76732269 TTTCATACTCAGCATTCTTCTTTCTTAACTCTATCAT
1 TTTCATACTCAGCATTCTTCTTTCTTAACTCTATCAT
76732306 AGCACACGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.27, G:0.03, T:0.49
Consensus pattern (37 bp):
TTTCATACTCAGCATTCTTCTTTCTTAACTCTATCAT
Found at i:76735665 original size:26 final size:25
Alignment explanation
Indices: 76735590--76735674 Score: 63
Period size: 26 Copynumber: 3.5 Consensus size: 25
76735580 ATAGTATTTG
76735590 AAATATATACA-AA-AA-ATATTAA
1 AAATATATACATAATAATATATTAA
* * *
76735612 AAA-ATATATATAACTAGTA-ATGTTA
1 AAATATATACATAA-TAATATAT-TAA
76735637 AAATATATACATAATAATATATATAA
1 AAATATATACATAATAATATAT-TAA
* *
76735663 AAAAATAAACAT
1 AAATATATACAT
76735675 TGAAAAATGT
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
21 6 0.13
22 5 0.11
24 3 0.06
25 10 0.21
26 23 0.49
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (25 bp):
AAATATATACATAATAATATATTAA
Found at i:76736073 original size:26 final size:25
Alignment explanation
Indices: 76736044--76736105 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
76736034 TAATAATAAC
*
76736044 ATATACATAATACGGTATTTAAAAAA
1 ATATACATAATACAGTA-TTAAAAAA
* *
76736070 ATATATATAATATAGTATTAAAAAA
1 ATATACATAATACAGTATTAAAAAA
76736095 ATGTATACATA
1 A--TATACATA
76736106 GTATATATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 9 0.30
26 14 0.47
27 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (25 bp):
ATATACATAATACAGTATTAAAAAA
Found at i:76736096 original size:25 final size:26
Alignment explanation
Indices: 76736044--76736101 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
76736034 TAATAATAAC
* *
76736044 ATATACATAATACGGTATTTAAAAAA
1 ATATATATAATACAGTATTTAAAAAA
*
76736070 ATATATATAATATAGTA-TTAAAAAA
1 ATATATATAATACAGTATTTAAAAAA
*
76736095 ATGTATA
1 ATATATA
76736102 CATAGTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.34
Consensus pattern (26 bp):
ATATATATAATACAGTATTTAAAAAA
Found at i:76736320 original size:27 final size:25
Alignment explanation
Indices: 76736290--76736367 Score: 83
Period size: 25 Copynumber: 3.1 Consensus size: 25
76736280 TAAAAATACA
76736290 ATATTAAAAGATATATATACGTAATAT
1 ATATTAAAA-ATATATATAC-TAATAT
*
76736317 ATA-TAAAAATGTATATA-TAATAT
1 ATATTAAAAATATATATACTAATAT
76736340 AATATTAAAAATAT-T-TACATAATAT
1 -ATATTAAAAATATATATAC-TAATAT
76736365 ATA
1 ATA
76736368 CATATTAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
23 8 0.18
24 7 0.16
25 22 0.49
26 5 0.11
27 3 0.07
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (25 bp):
ATATTAAAAATATATATACTAATAT
Found at i:76736701 original size:23 final size:24
Alignment explanation
Indices: 76736631--76736711 Score: 80
Period size: 23 Copynumber: 3.4 Consensus size: 24
76736621 AAACAATTAT
*
76736631 TAATA-ATATTACATAAATATATACA
1 TAATATATATTA-A-AAGTATATACA
*
76736656 T-ATATATATT-AAAGATAAATACA
1 TAATATATATTAAAAG-TATATACA
*
76736679 TAATA-ATATTAAAAGTATGTACA
1 TAATATATATTAAAAGTATATACA
76736702 TAATATATAT
1 TAATATATAT
76736712 ATATACATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
22 2 0.04
23 25 0.53
24 14 0.30
25 6 0.13
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (24 bp):
TAATATATATTAAAAGTATATACA
Found at i:76736744 original size:15 final size:16
Alignment explanation
Indices: 76736718--76736756 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
76736708 ATATATATAC
* *
76736718 ATAATATATTAAAGAT
1 ATAATATATTAAAAAA
76736734 ATAATAT-TTAAAAAA
1 ATAATATATTAAAAAA
76736749 ATAATATA
1 ATAATATA
76736757 CATAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATAATATATTAAAAAA
Found at i:76736936 original size:12 final size:12
Alignment explanation
Indices: 76736921--76737047 Score: 70
Period size: 12 Copynumber: 10.7 Consensus size: 12
76736911 TAATAGTGAA
76736921 AATAATAAATAT
1 AATAATAAATAT
76736933 AATAATAAATAT
1 AATAATAAATAT
* *
76736945 AGTAATAGAA-AC
1 AATAATA-AATAT
* *
76736957 GATAAT-ACTAT
1 AATAATAAATAT
*
76736968 -ATAAAAAATAT
1 AATAATAAATAT
*
76736979 -ATATATACATAT
1 AATA-ATAAATAT
76736991 -ATAATAAA-AT
1 AATAATAAATAT
*
76737001 ATATACT-AATATT
1 A-ATAATAAATA-T
*
76737014 AATAATGAATAT
1 AATAATAAATAT
*
76737026 AATATTATAATACT
1 AATAATA-AATA-T
76737040 AATAATAA
1 AATAATAA
76737048 CAATACGAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 21
0.70 0.13 0.17
Matches are distributed among these distances:
10 7 0.08
11 14 0.16
12 47 0.53
13 13 0.15
14 7 0.08
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:76737012 original size:20 final size:21
Alignment explanation
Indices: 76736979--76737018 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
76736969 TAAAAAATAT
76736979 ATATATACATATA-TAATAAA
1 ATATATACATATATTAATAAA
76736999 ATATATAC-TAATATTAATAA
1 ATATATACAT-ATATTAATAA
76737019 TGAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATACATATATTAATAAA
Found at i:76737052 original size:23 final size:23
Alignment explanation
Indices: 76736958--76737052 Score: 79
Period size: 23 Copynumber: 3.9 Consensus size: 23
76736948 AATAGAAACG
76736958 ATAATACTATATAA-AAAATA-T
1 ATAATACTATATAATAAAATATT
76736979 ATATATACATATATAATAAAATATAT
1 ATA-ATAC-TATATAATAAAATAT-T
* *
76737005 ACTAATATTAATAATGAATATAATATT
1 A-TAATACT-AT-AT-AATAAAATATT
76737032 ATAATACTA-ATAATAACAATA
1 ATAATACTATATAATAA-AATA
76737053 CGAAATTAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
21 3 0.05
22 8 0.13
23 13 0.22
24 6 0.10
25 2 0.03
26 13 0.22
27 6 0.10
28 9 0.15
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (23 bp):
ATAATACTATATAATAAAATATT
Found at i:76737157 original size:9 final size:9
Alignment explanation
Indices: 76737138--76737186 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
76737128 ATATATAAAA
*
76737138 AATAATAAT
1 AATATTAAT
*
76737147 AATATTGAT
1 AATATTAAT
76737156 AATATTAAT
1 AATATTAAT
76737165 AATATTAGA-
1 AATATTA-AT
*
76737174 AATAGTAAT
1 AATATTAAT
76737183 AATA
1 AATA
76737187 ATATTTAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 1 0.03
9 32 0.94
10 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (9 bp):
AATATTAAT
Found at i:76737159 original size:18 final size:18
Alignment explanation
Indices: 76737137--76737186 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
76737127 AATATATAAA
76737137 AAATAATAATAATATT-G
1 AAATAATAATAATATTAG
*
76737154 ATAATATTAATAATATTAG
1 A-AATAATAATAATATTAG
*
76737173 AAATAGTAATAATA
1 AAATAATAATAATA
76737187 ATATTTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 1 0.03
18 26 0.90
19 2 0.07
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (18 bp):
AAATAATAATAATATTAG
Found at i:76737384 original size:6 final size:6
Alignment explanation
Indices: 76737373--76737398 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
76737363 GACCAAAATG
76737373 AAACAA AAACAA AAACAA AAACAA AA
1 AAACAA AAACAA AAACAA AAACAA AA
76737399 TTTCTGGGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACAA
Found at i:76740179 original size:25 final size:25
Alignment explanation
Indices: 76740131--76740180 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
76740121 TTTGGGTTGA
*
76740131 CATTTACTAAGCAATATCAGATATT
1 CATTTACTAAGCAATATCAAATATT
* * *
76740156 CATTTATTAGGCAATATTAAATATT
1 CATTTACTAAGCAATATCAAATATT
76740181 TAAATTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:76745588 original size:25 final size:23
Alignment explanation
Indices: 76745558--76745622 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
76745548 TCGAGCCATA
76745558 TAACGGGAAGCTCATGTGAGTCATG
1 TAACGGGAAGCTCATGTGA-TC-TG
* *
76745583 TAACGGGAAACTCATTTGATCTG
1 TAACGGGAAGCTCATGTGATCTG
*
76745606 TATAGCAGGAAGCTCAT
1 TA-A-CGGGAAGCTCAT
76745623 AAGAGCCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 4 0.12
24 3 0.09
25 27 0.79
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (23 bp):
TAACGGGAAGCTCATGTGATCTG
Found at i:76746783 original size:21 final size:20
Alignment explanation
Indices: 76746737--76746784 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
76746727 GATGATATTT
76746737 TTTTATTTTATTATTTATCA
1 TTTTATTTTATTATTTATCA
*
76746757 TCTTTATTTTTTTACTTT-TCAA
1 T-TTTATTTTATTA-TTTATC-A
76746779 TTTTAT
1 TTTTAT
76746785 CCTTTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 18 0.75
22 5 0.21
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTATTTTATTATTTATCA
Found at i:76749058 original size:37 final size:36
Alignment explanation
Indices: 76749007--76749137 Score: 127
Period size: 37 Copynumber: 3.5 Consensus size: 36
76748997 AGATTCCCTA
* * *
76749007 AAAAAAAGACAGAGATGAATATAAGTGATTCTCTGC
1 AAAAAAAGATAGAGATGAACATAAGTGGTTCTCTGC
* * *
76749043 AAATAAAAGATAGAGATAAACATGAGTGGTTCTTTGC
1 AAA-AAAAGATAGAGATGAACATAAGTGGTTCTCTGC
* * * * *
76749080 AAAAAAAAAAAGACAGATGAACAGATGTGGTTCTCTGT
1 AAAAAAAGATAG--AGATGAACATAAGTGGTTCTCTGC
76749118 AAAGAAAAGATAGAGATGAA
1 AAA-AAAAGATAGAGATGAA
76749138 TAGTAAAGAT
Statistics
Matches: 75, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
36 10 0.13
37 37 0.49
38 21 0.28
39 7 0.09
ACGTcount: A:0.49, C:0.08, G:0.21, T:0.21
Consensus pattern (36 bp):
AAAAAAAGATAGAGATGAACATAAGTGGTTCTCTGC
Found at i:76749461 original size:15 final size:16
Alignment explanation
Indices: 76749431--76749468 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
76749421 TTTTGTTTAC
76749431 AAATTTAAATTTTCAA
1 AAATTTAAATTTTCAA
*
76749447 AAATTTAGA-TTTCAA
1 AAATTTAAATTTTCAA
*
76749462 AATTTTA
1 AAATTTA
76749469 CTTCCATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (16 bp):
AAATTTAAATTTTCAA
Found at i:76763836 original size:24 final size:23
Alignment explanation
Indices: 76763791--76763836 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
76763781 TTTTTCCTAA
*
76763791 AAAATCGATGTACGGTATAAATT
1 AAAATCGATGTACGGTACAAATT
76763814 AAAATC-AGTGTACGGTGACAAAT
1 AAAATCGA-TGTACGGT-ACAAAT
76763837 GCATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 14 0.70
24 5 0.25
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (23 bp):
AAAATCGATGTACGGTACAAATT
Found at i:76772014 original size:27 final size:27
Alignment explanation
Indices: 76771958--76772017 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
76771948 TTTTAAGAAT
* **
76771958 TTAAAAAATTTATAATTTTTTAAAAAA
1 TTAAAAAATTTATAAATCATTAAAAAA
*
76771985 TTAAAAAATTTA-AAATCATTAAAATTA
1 TTAAAAAATTTATAAATCATTAAAA-AA
76772012 TTAAAA
1 TTAAAA
76772018 CTATAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
TTAAAAAATTTATAAATCATTAAAAAA
Found at i:76772032 original size:26 final size:26
Alignment explanation
Indices: 76772003--76772052 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
76771993 TTTAAAATCA
76772003 TTAAAATTA-TTAAAACTATAAAAATT
1 TTAAAATTATTTAAAA-TATAAAAATT
* *
76772029 TTAATATTATTTAAAATTTAAAAA
1 TTAAAATTATTTAAAATATAAAAA
76772053 ATTAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
TTAAAATTATTTAAAATATAAAAATT
Found at i:76774428 original size:35 final size:35
Alignment explanation
Indices: 76774382--76774451 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
76774372 ATTTTAACTC
76774382 AGTTTACTAAGCATCTTTGACTGAATCTGCAAAAA
1 AGTTTACTAAGCATCTTTGACTGAATCTGCAAAAA
76774417 AGTTTACTAAGCATCTTTGACTGAATCTGCAAAAA
1 AGTTTACTAAGCATCTTTGACTGAATCTGCAAAAA
76774452 CCCAATGGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (35 bp):
AGTTTACTAAGCATCTTTGACTGAATCTGCAAAAA
Found at i:76776160 original size:29 final size:29
Alignment explanation
Indices: 76776127--76776183 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
76776117 TACAATCTGT
76776127 ACAAGACTACATATACATACAGACAAAGC
1 ACAAGACTACATATACATACAGACAAAGC
76776156 ACAAGACTACATATACATACAGACAAAG
1 ACAAGACTACATATACATACAGACAAAG
76776184 ACTGATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.23, G:0.11, T:0.14
Consensus pattern (29 bp):
ACAAGACTACATATACATACAGACAAAGC
Found at i:76776732 original size:36 final size:40
Alignment explanation
Indices: 76776692--76776769 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 40
76776682 TTTGTTTACT
* * *
76776692 TTTTTTTAACTTTT-TC-CTATTCTT-TTTATTTT-TTTA
1 TTTTTTAAAATTTTGTCTCTATCCTTATTTATTTTATTTA
*
76776728 TTTTTTAAAATTTTGTCTTTATCCTTATTTATTTTATTTA
1 TTTTTTAAAATTTTGTCTCTATCCTTATTTATTTTATTTA
76776768 TT
1 TT
76776770 ATTAATTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
36 12 0.35
37 2 0.06
38 6 0.18
39 8 0.24
40 6 0.18
ACGTcount: A:0.18, C:0.09, G:0.01, T:0.72
Consensus pattern (40 bp):
TTTTTTAAAATTTTGTCTCTATCCTTATTTATTTTATTTA
Found at i:76776855 original size:21 final size:19
Alignment explanation
Indices: 76776818--76776853 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
76776808 CTTATAATAT
*
76776818 ATATATTTTTGAATATTAA
1 ATATATATTTGAATATTAA
76776837 ATATATATTTGAA-ATTA
1 ATATATATTTGAATATTA
76776854 TTTTGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (19 bp):
ATATATATTTGAATATTAA
Found at i:76776883 original size:14 final size:14
Alignment explanation
Indices: 76776864--76776923 Score: 55
Period size: 14 Copynumber: 4.9 Consensus size: 14
76776854 TTTTGTTAAA
76776864 TTTTAAATATTATT
1 TTTTAAATATTATT
76776878 TTTT-AA-ATTATT
1 TTTTAAATATTATT
76776890 TTTT-AA-A--A--
1 TTTTAAATATTATT
76776898 TTTTAAATATTATT
1 TTTTAAATATTATT
*
76776912 TTTAAAATATTA
1 TTTTAAATATTA
76776924 AATATATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
8 4 0.10
9 2 0.05
10 2 0.05
12 14 0.36
13 2 0.05
14 15 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTAAATATTATT
Found at i:76776887 original size:12 final size:12
Alignment explanation
Indices: 76776872--76776896 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76776862 AATTTTAAAT
76776872 ATTATTTTTTAA
1 ATTATTTTTTAA
76776884 ATTATTTTTTAA
1 ATTATTTTTTAA
76776896 A
1 A
76776897 ATTTTAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTATTTTTTAA
Found at i:76776889 original size:34 final size:34
Alignment explanation
Indices: 76776833--76776919 Score: 124
Period size: 34 Copynumber: 2.6 Consensus size: 34
76776823 TTTTTGAATA
* *
76776833 TTAAATA-TATATTTGAAATTATTTTGTT-AAATT
1 TTAAATATTATTTTTAAAATTATTTT-TTAAAATT
*
76776866 TTAAATATTATTTTTTAAATTATTTTTTAAAATT
1 TTAAATATTATTTTTAAAATTATTTTTTAAAATT
76776900 TTAAATATTATTTTTAAAAT
1 TTAAATATTATTTTTAAAAT
76776920 ATTAAATATA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
33 9 0.18
34 40 0.82
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (34 bp):
TTAAATATTATTTTTAAAATTATTTTTTAAAATT
Found at i:76776942 original size:22 final size:21
Alignment explanation
Indices: 76776880--76776943 Score: 87
Period size: 21 Copynumber: 3.0 Consensus size: 21
76776870 ATATTATTTT
*
76776880 TTAAAT-TATTTTTTAAAATT
1 TTAAATATATTTTTTAAAATA
76776900 TTAAATAT-TATTTTTAAAATA
1 TTAAATATAT-TTTTTAAAATA
76776921 TTAAATATATTTTTTAATAATA
1 TTAAATATATTTTTTAA-AATA
76776943 T
1 T
76776944 AAAACATTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
20 7 0.18
21 26 0.67
22 6 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTAAATATATTTTTTAAAATA
Found at i:76776952 original size:20 final size:21
Alignment explanation
Indices: 76776887--76776952 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
76776877 TTTTTAAATT
*
76776887 ATTTTTTAAAATTTTAAATA-
1 ATTTTTTAAAATATTAAATAC
* *
76776907 TTATTTTTAAAATATTAAATAT
1 AT-TTTTTAAAATATTAAATAC
76776929 ATTTTTTAATAATA-TAAA-AC
1 ATTTTTTAA-AATATTAAATAC
76776949 ATTT
1 ATTT
76776953 AAATATTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 6 0.15
21 28 0.72
22 5 0.13
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTTTTTAAAATATTAAATAC
Found at i:76777100 original size:20 final size:23
Alignment explanation
Indices: 76777074--76777127 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 23
76777064 AATTAATAAT
76777074 TTATAAAAAT-TATATTT-AATA
1 TTATAAAAATATATATTTAAATA
76777095 TT-T-AAAATATATATTTAAAATA
1 TTATAAAAATATATATTT-AAATA
76777117 TTATAAAAATA
1 TTATAAAAATA
76777128 ATAATAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
19 5 0.18
20 8 0.29
21 2 0.07
22 6 0.21
23 1 0.04
24 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TTATAAAAATATATATTTAAATA
Found at i:76777117 original size:11 final size:13
Alignment explanation
Indices: 76777092--76777200 Score: 57
Period size: 13 Copynumber: 8.0 Consensus size: 13
76777082 ATTATATTTA
76777092 ATATTTAAAATAT
1 ATATTTAAAATAT
76777105 ATATTTAAAATAT
1 ATATTTAAAATAT
*
76777118 -TA-TAAAAATAAT
1 ATATTTAAAAT-AT
76777130 AATAAATTTAAAAGGTCAT
1 -AT--ATTTAAAA--T-AT
*
76777149 ATCTTTAAAAATAAT
1 ATATTT-AAAAT-AT
*
76777164 ATATTTTAAATA-
1 ATATTTAAAATAT
*
76777176 AT-TTAAAAATCAT
1 ATATTTAAAAT-AT
76777189 A-ATTTAAAATAT
1 ATATTTAAAATAT
76777201 TATAAAACAA
Statistics
Matches: 74, Mismatches: 10, Indels: 25
0.68 0.09 0.23
Matches are distributed among these distances:
11 12 0.16
12 9 0.12
13 22 0.30
14 5 0.07
15 8 0.11
16 4 0.05
17 9 0.12
18 2 0.03
19 3 0.04
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (13 bp):
ATATTTAAAATAT
Found at i:76777181 original size:25 final size:23
Alignment explanation
Indices: 76777152--76777207 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
76777142 AGGTCATATC
*
76777152 TTTAAAAATAATATATTTTAAATAA
1 TTTAAAAATAATA-ATTTAAAAT-A
*
76777177 TTTAAAAATCATAATTTAAAATA
1 TTTAAAAATAATAATTTAAAATA
76777200 TTATAAAA
1 TT-TAAAA
76777208 CAAATTAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 3 0.11
24 13 0.46
25 12 0.43
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
TTTAAAAATAATAATTTAAAATA
Found at i:76777193 original size:24 final size:24
Alignment explanation
Indices: 76777152--76777263 Score: 72
Period size: 25 Copynumber: 4.5 Consensus size: 24
76777142 AGGTCATATC
*
76777152 TTTAAAAATAATATATTTTAAATAA
1 TTTAAAAATAATATATTTAAAAT-A
*
76777177 TTTAAAAATCATA-ATTTAAAATA
1 TTTAAAAATAATATATTTAAAATA
*
76777200 TTATAAAACAAATTAGAAATATTT-AAA-A
1 TT-T--AA-AAA-TA-ATATATTTAAAATA
*
76777228 TTT-AAAAT-ATACATTTAAAATA
1 TTTAAAAATAATATATTTAAAATA
*
76777250 TTATAAAACTAATA
1 TT-TAAAAATAATA
76777264 ATAAATTTGA
Statistics
Matches: 68, Mismatches: 7, Indels: 24
0.69 0.07 0.24
Matches are distributed among these distances:
20 6 0.09
21 3 0.04
22 4 0.06
23 7 0.10
24 14 0.21
25 15 0.22
26 2 0.03
27 4 0.06
28 4 0.06
29 5 0.07
30 4 0.06
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (24 bp):
TTTAAAAATAATATATTTAAAATA
Found at i:76777326 original size:22 final size:21
Alignment explanation
Indices: 76777299--76777346 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
76777289 AATTATTTAA
* *
76777299 ATATTTTATATTATTAAAAAAT
1 ATATTTAATATT-TAAAAAAAT
76777321 ATATTTAATATTTAAAAAAAT
1 ATATTTAATATTTAAAAAAAT
76777342 A-ATTT
1 ATATTT
76777347 CAAAAATACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 4 0.17
21 9 0.38
22 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATATTTAATATTTAAAAAAAT
Found at i:76777327 original size:133 final size:133
Alignment explanation
Indices: 76777085--76777328 Score: 359
Period size: 133 Copynumber: 1.8 Consensus size: 133
76777075 TATAAAAATT
* *
76777085 ATATTTAATATTTAAAATATATATTTAAAATATTATAAAAATAATAATAAATTTAAAAGGTCATA
1 ATATTTAAAATTTAAAATATACATTTAAAATATTATAAAAATAATAATAAATTTAAAAGGTCATA
*
76777150 TCTTTAAAAATAATATATTTTAAATAATTTAAAAATCATAATTTAAAATATTATAAAACAAATTA
66 TCTTTAAAAATAATATATTTTAAATAATTAAAAAATCATAATTTAAAATATTATAAAACAAATTA
76777215 GAA
131 GAA
* * *
76777218 ATATTTAAAATTTAAAATATACATTTAAAATATTATAAAACTAATAATAAATTTGAAAGGTTATA
1 ATATTTAAAATTTAAAATATACATTTAAAATATTATAAAAATAATAATAAATTTAAAAGGTCATA
* * *
76777283 TCTTTAAATTATTTAA-ATATTTTATATTATTAAAAAAT-AT-ATTTAA
66 TCTTTAAA--A-ATAATATATTTTAAATAATTAAAAAATCATAATTTAA
76777329 TATTTAAAAA
Statistics
Matches: 99, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
133 74 0.75
134 2 0.02
135 20 0.20
136 3 0.03
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.41
Consensus pattern (133 bp):
ATATTTAAAATTTAAAATATACATTTAAAATATTATAAAAATAATAATAAATTTAAAAGGTCATA
TCTTTAAAAATAATATATTTTAAATAATTAAAAAATCATAATTTAAAATATTATAAAACAAATTA
GAA
Found at i:76777337 original size:19 final size:20
Alignment explanation
Indices: 76777297--76777342 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
76777287 TAAATTATTT
76777297 AAATATTTTATATTATTAAA
1 AAATATTTTATATTATTAAA
*
76777317 AAATATATTTAATATT-TAAAA
1 AAATAT-TTT-ATATTATTAAA
76777338 AAATA
1 AAATA
76777343 ATTTCAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
21 12 0.52
22 5 0.22
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATATTTTATATTATTAAA
Found at i:76778102 original size:16 final size:17
Alignment explanation
Indices: 76778083--76778116 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
76778073 GTTAAAGTGT
*
76778083 AATTTTATTAATT-TAA
1 AATTTTATAAATTATAA
76778099 AATTTTATAAATTATAA
1 AATTTTATAAATTATAA
76778116 A
1 A
76778117 GAGACTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTTTATAAATTATAA
Found at i:76778765 original size:20 final size:20
Alignment explanation
Indices: 76778737--76778794 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
76778727 AGATAGGGGC
* *
76778737 ACACACCCGTGTGGCCTGGG
1 ACACGCCCGTGTGGCCTGGA
76778757 ACACGCCCGTGTGGCCTGGA
1 ACACGCCCGTGTGGCCTGGA
*
76778777 ACATGCCCGTGTGGCCTG
1 ACACGCCCGTGTGGCCTG
76778795 CCCATGGGCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.17
Consensus pattern (20 bp):
ACACGCCCGTGTGGCCTGGA
Found at i:76779977 original size:27 final size:26
Alignment explanation
Indices: 76779940--76780051 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
76779930 AGCATGGCTG
* *
76779940 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
76779966 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
76779994 CCAGAACAGATATATGTGGCGGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
76780021 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
76780048 CCAG
1 CCAG
76780052 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.07
27 54 0.71
28 17 0.22
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:76779999 original size:54 final size:54
Alignment explanation
Indices: 76779940--76780051 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
76779930 AGCATGGCTG
*
76779940 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
76779994 CCAGAACAGATATATGTGGCGGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
76780048 CCAG
1 CCAG
76780052 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:76781665 original size:26 final size:26
Alignment explanation
Indices: 76781634--76781741 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
76781624 TGAAATGCCC
*
76781634 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
76781660 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
76781686 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
76781712 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76781738 ATCA
1 ATCA
76781742 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76786419 original size:27 final size:25
Alignment explanation
Indices: 76786382--76786502 Score: 107
Period size: 27 Copynumber: 4.5 Consensus size: 25
76786372 AGCATGGCTG
*
76786382 CCAGAACAGATAATATGACAGAGTCA
1 CCAGAACAGATAATATG-CAGAGCCA
76786408 CCAGATACAGATAATCATCGCAGAGCCA
1 CCAGA-ACAGATAAT-AT-GCAGAGCCA
*
76786436 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATAT-GCAGAGCCA
** * *
76786463 CCAGATTAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-ATAT-GCAGAGCCA
76786490 CCAGAAACAGATA
1 CCAG-AACAGATA
76786503 TTTGTGGCAT
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.06
27 54 0.66
28 22 0.27
29 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (25 bp):
CCAGAACAGATAATATGCAGAGCCA
Found at i:76786467 original size:55 final size:54
Alignment explanation
Indices: 76786382--76786522 Score: 167
Period size: 55 Copynumber: 2.6 Consensus size: 54
76786372 AGCATGGCTG
* * *
76786382 CCAGAACAGATA-ATATGACAGAGTCACCAGATACAGATAATCATCGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCATCGCAGAGCCA
* * ** *
76786436 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCATCGCAGAGCCA
* *
76786490 CCAGAAACAGATATTTGTGGCATAGCCACCAGA
1 CCAG-AACAGATATATGTGGCAGAGCCACCAGA
76786523 ACGCTTCCTC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
54 32 0.43
55 43 0.57
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCATCGCAGAGCCA
Found at i:76786510 original size:28 final size:28
Alignment explanation
Indices: 76786400--76786523 Score: 144
Period size: 27 Copynumber: 4.5 Consensus size: 28
76786390 GATAATATGA
* * * ** *
76786400 CAGAGTCACCAGATACAGATAATCATCG
1 CAGAGCCACCAGAAACAGATATTTGTGG
*
76786428 CAGAGCCACCAG-AACAGATATATGTGG
1 CAGAGCCACCAGAAACAGATATTTGTGG
**
76786455 CAGAGCCACCAG-ATTAGATATTTGTGG
1 CAGAGCCACCAGAAACAGATATTTGTGG
76786482 CAGAGCCACCAGAAACAGATATTTGTGG
1 CAGAGCCACCAGAAACAGATATTTGTGG
*
76786510 CATAGCCACCAGAA
1 CAGAGCCACCAGAA
76786524 CGCTTCCTCC
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 45 0.55
28 37 0.45
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (28 bp):
CAGAGCCACCAGAAACAGATATTTGTGG
Found at i:76786895 original size:8 final size:8
Alignment explanation
Indices: 76786879--76786908 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
76786869 CTCAAAATAC
76786879 CGGCTTTT
1 CGGCTTTT
*
76786887 CGGCATTT
1 CGGCTTTT
76786895 CGGCTTTT
1 CGGCTTTT
76786903 CGGCTT
1 CGGCTT
76786909 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:76788192 original size:26 final size:26
Alignment explanation
Indices: 76788085--76788184 Score: 173
Period size: 26 Copynumber: 3.8 Consensus size: 26
76788075 TGAAATTCCC
76788085 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76788111 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
76788137 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76788163 ATCATGGAACATTTATCTAACC
1 ATCATGGAACATTTACCTAACC
76788185 TATAATCAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76788739 original size:13 final size:13
Alignment explanation
Indices: 76788721--76788757 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
76788711 AGATAATTAG
76788721 CAAATCATACATA
1 CAAATCATACATA
76788734 CAAATCATACATA
1 CAAATCATACATA
*
76788747 TAAATTCATAC
1 CAAA-TCATAC
76788758 CAAACTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:76790128 original size:14 final size:14
Alignment explanation
Indices: 76790109--76790138 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76790099 TAACCTTCAA
76790109 TTTTCCCTTTTTCT
1 TTTTCCCTTTTTCT
*
76790123 TTTTCCTTTTTTCT
1 TTTTCCCTTTTTCT
76790137 TT
1 TT
76790139 CTTTCTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTCCCTTTTTCT
Found at i:76790360 original size:3 final size:3
Alignment explanation
Indices: 76790346--76790376 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
76790336 TTATCTCCAT
76790346 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
76790377 ATATCTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:76791281 original size:26 final size:27
Alignment explanation
Indices: 76791239--76791290 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
76791229 TTGCATTCAA
*
76791239 ATTCTATTATCTCAATTTTCTCAATTC
1 ATTCTATTATCTCAATTCTCTCAATTC
* *
76791266 ATTC-ATTCTCTCAATTCTCTTAATT
1 ATTCTATTATCTCAATTCTCTCAATT
76791291 ATTTAGTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.23, G:0.00, T:0.52
Consensus pattern (27 bp):
ATTCTATTATCTCAATTCTCTCAATTC
Found at i:76793796 original size:47 final size:46
Alignment explanation
Indices: 76793692--76793811 Score: 125
Period size: 47 Copynumber: 2.5 Consensus size: 46
76793682 TCATGGCAAT
*
76793692 ATGTGATATGTGATTTCCGTATAAGACCATATCTAGGATATGACATCA
1 ATGTGATATGTG--TTCCGTGTAAGACCATATCTAGGATATGACATCA
* ** * **
76793740 GTGACATATGTGCTTCTGTGTAAGACCATATCT-GGAATATGGTATCA
1 ATGTGATATGTG-TTCCGTGTAAGACCATATCTAGG-ATATGACATCA
*
76793787 ATGTGATATGTGATCCGTGTAAGAC
1 ATGTGATATGTGTTCCGTGTAAGAC
76793812 TATGGCTGGG
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
46 13 0.22
47 36 0.62
48 9 0.16
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (46 bp):
ATGTGATATGTGTTCCGTGTAAGACCATATCTAGGATATGACATCA
Found at i:76796276 original size:20 final size:20
Alignment explanation
Indices: 76796251--76796290 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76796241 TATTCTTTTA
76796251 AATGATAATTTTGGCTAACT
1 AATGATAATTTTGGCTAACT
76796271 AATGATAATTTTGGCTAACT
1 AATGATAATTTTGGCTAACT
76796291 CAAAGTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (20 bp):
AATGATAATTTTGGCTAACT
Found at i:76801481 original size:3 final size:3
Alignment explanation
Indices: 76801473--76801506 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
76801463 GAAAAGAATG
76801473 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
76801507 GATATATTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:76807331 original size:21 final size:21
Alignment explanation
Indices: 76807305--76807345 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76807295 AGACGAGCAA
* *
76807305 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
76807326 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
76807346 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:76809284 original size:16 final size:16
Alignment explanation
Indices: 76809251--76809284 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76809241 GGAGATTGTT
* *
76809251 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
76809267 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
76809283 AA
1 AA
76809285 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:76812145 original size:18 final size:18
Alignment explanation
Indices: 76812122--76812161 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
76812112 TGGTCGACTT
*
76812122 TTATTTTAATAT-TTTTTA
1 TTATTTTAA-ATGTATTTA
76812140 TTATTTTAAATGTATTTA
1 TTATTTTAAATGTATTTA
76812158 TTAT
1 TTAT
76812162 ATCTTATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTATTTTAAATGTATTTA
Found at i:76812588 original size:16 final size:16
Alignment explanation
Indices: 76812569--76812611 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
76812559 AACAGGTTAA
* *
76812569 AATCATTTCTAATTTT
1 AATCATTTCAAATTTG
*
76812585 AATCACTTCAAATTTG
1 AATCATTTCAAATTTG
76812601 AATCATTTCAA
1 AATCATTTCAA
76812612 GATCGAAGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.37, C:0.16, G:0.02, T:0.44
Consensus pattern (16 bp):
AATCATTTCAAATTTG
Found at i:76813333 original size:29 final size:28
Alignment explanation
Indices: 76813292--76813353 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 28
76813282 CAAATTGAAA
* *
76813292 AAAAAAACCTAAAATCAACTATTAAAAATC
1 AAAAAAA-CTAAAAAC-ACTAGTAAAAATC
76813322 TAAAAAAA-TAAAAACACTAGTAAAAATC
1 -AAAAAAACTAAAAACACTAGTAAAAATC
76813350 AAAA
1 AAAA
76813354 TTTGGAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.14
28 12 0.41
29 6 0.21
31 7 0.24
ACGTcount: A:0.68, C:0.13, G:0.02, T:0.18
Consensus pattern (28 bp):
AAAAAAACTAAAAACACTAGTAAAAATC
Found at i:76813447 original size:33 final size:34
Alignment explanation
Indices: 76813400--76813472 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 34
76813390 TTGAAATTTG
** *
76813400 ATTAAAAATTTTAAAAAAA-TTATCTGCCTAAAA
1 ATTAAAAAAATTAAAAAAATTTATCTGCATAAAA
*
76813433 ATTAAAAAAATTAAAAAAATTTATTTGCATAAAA
1 ATTAAAAAAATTAAAAAAATTTATCTGCATAAAA
76813467 A-TAAAA
1 ATTAAAA
76813473 CCTGATTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 22 0.63
34 13 0.37
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (34 bp):
ATTAAAAAAATTAAAAAAATTTATCTGCATAAAA
Found at i:76813448 original size:8 final size:9
Alignment explanation
Indices: 76813429--76813453 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
76813419 TTATCTGCCT
76813429 AAAAATTAA
1 AAAAATTAA
76813438 AAAAATTAA
1 AAAAATTAA
76813447 AAAAATT
1 AAAAATT
76813454 TATTTGCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAAATTAA
Found at i:76813450 original size:34 final size:33
Alignment explanation
Indices: 76813403--76813472 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 33
76813393 AAATTTGATT
* * *
76813403 AAAAATTTTAAAAAAATTATCTGCCTAAAAATTA
1 AAAAAATTAAAAAAAATTATCTGCATAAAAA-TA
* *
76813437 AAAAAATTAAAAAAATTTATTTGCATAAAAATA
1 AAAAAATTAAAAAAAATTATCTGCATAAAAATA
76813470 AAA
1 AAA
76813473 CCTGATTTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
33 5 0.16
34 26 0.84
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (33 bp):
AAAAAATTAAAAAAAATTATCTGCATAAAAATA
Found at i:76816879 original size:13 final size:14
Alignment explanation
Indices: 76816854--76816883 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
76816844 AAATATTTAT
76816854 ATAATTCTTAAATA
1 ATAATTCTTAAATA
76816868 ATAATT-TTAAATA
1 ATAATTCTTAAATA
76816881 ATA
1 ATA
76816884 TTATAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (14 bp):
ATAATTCTTAAATA
Found at i:76820888 original size:33 final size:33
Alignment explanation
Indices: 76820851--76820986 Score: 114
Period size: 33 Copynumber: 4.1 Consensus size: 33
76820841 GCTCAGTCAA
76820851 GGTCTTACATTCATAGTGCCATAACCCAGTTAT
1 GGTCTTACATTCATAGTGCCATAACCCAGTTAT
* ** *
76820884 GGTCTTATCA-TCAGAGTGTTATAGCCCAGTTAT
1 GGTCTTA-CATTCATAGTGCCATAACCCAGTTAT
* * * *** **
76820917 GGTCTTACATATAAACATTGCCATGGTCCA-CCAT
1 GGTCTTACAT-T-CATAGTGCCATAACCCAGTTAT
*
76820951 GGTCTTACATTCATAGTGCCATAACCCAATTAT
1 GGTCTTACATTCATAGTGCCATAACCCAGTTAT
76820984 GGT
1 GGT
76820987 TTTATCCGTC
Statistics
Matches: 77, Mismatches: 21, Indels: 10
0.71 0.19 0.09
Matches are distributed among these distances:
32 13 0.17
33 39 0.51
34 15 0.19
35 10 0.13
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (33 bp):
GGTCTTACATTCATAGTGCCATAACCCAGTTAT
Found at i:76820984 original size:100 final size:99
Alignment explanation
Indices: 76820805--76820992 Score: 281
Period size: 100 Copynumber: 1.9 Consensus size: 99
76820795 TCTTTGTGCC
* *
76820805 ATAGTCCAGTTATGGTCTTACATATACATTACCATGGCTCAGTCAAGGTCTTACATTCATAGTGC
1 ATAGCCCAGTTATGGTCTTACATATACATTACCATGGCTCAGCCAAGGTCTTACATTCATAGTGC
*
76820870 CATAACCCAGTTATGGTCTTATCATCAGAGTGTT
66 CATAACCCAATTATGGTCTTATCATCAGAGTGTT
* *
76820904 ATAGCCCAGTTATGGTCTTACATATAAACATTGCCATGG-TCCA-CCATGGTCTTACATTCATAG
1 ATAGCCCAGTTATGGTCTTACATAT--ACATTACCATGGCT-CAGCCAAGGTCTTACATTCATAG
*
76820967 TGCCATAACCCAATTATGGTTTTATC
63 TGCCATAACCCAATTATGGTCTTATC
76820993 CGTCAATTCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
99 24 0.30
100 43 0.54
101 13 0.16
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (99 bp):
ATAGCCCAGTTATGGTCTTACATATACATTACCATGGCTCAGCCAAGGTCTTACATTCATAGTGC
CATAACCCAATTATGGTCTTATCATCAGAGTGTT
Found at i:76821041 original size:30 final size:30
Alignment explanation
Indices: 76821019--76821077 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
76821009 ACATTATTGC
76821019 CATAGCCCAGCTATGGTCTTACATATAAAT
1 CATAGCCCAGCTATGGTCTTACATATAAAT
*
76821049 CATAGCCCAGCTATGGTCTTATATATAAA
1 CATAGCCCAGCTATGGTCTTACATATAAA
76821078 CATTGTCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (30 bp):
CATAGCCCAGCTATGGTCTTACATATAAAT
Found at i:76822280 original size:47 final size:47
Alignment explanation
Indices: 76822147--76822317 Score: 175
Period size: 47 Copynumber: 3.6 Consensus size: 47
76822137 ATAGTAAAAC
* * *
76822147 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAACCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGAGGCCATATCCCAGA
* * * * *
76822196 CATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGAGGCCATATCCCAGA
* *
76822242 TATGGTCTTATACAGTAGCACATATCACACCGAGGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGAGGCCATATCCCAGA
* * * *
76822289 TATGGTATTATACGGAAGCACATATCACA
1 TATGGTCTTACACAGTAGCACATATCACA
76822318 TTTCTCCGAA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 26 0.25
47 54 0.53
48 10 0.10
49 12 0.12
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGAGGCCATATCCCAGA
Done.